Query 047604
Match_columns 382
No_of_seqs 125 out of 152
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 22:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jx3_A Protein DEK; alpha heli 30.8 18 0.00061 31.1 1.5 31 186-220 6-36 (131)
2 1whz_A Hypothetical protein; a 28.4 32 0.0011 25.5 2.4 24 192-215 46-69 (70)
3 3vou_A ION transport 2 domain 20.1 1.8E+02 0.0061 24.2 5.7 17 86-103 54-70 (148)
4 1fcq_A Hyaluronoglucosaminidas 20.0 22 0.00076 35.4 0.0 21 112-132 323-343 (350)
5 2oar_A Large-conductance mecha 16.6 1.3E+02 0.0045 27.2 4.2 30 326-355 90-120 (174)
6 4h33_A LMO2059 protein; bilaye 16.3 1.5E+02 0.005 24.7 4.3 31 64-103 31-61 (137)
7 2q67_A Potassium channel prote 14.0 2.5E+02 0.0085 22.5 5.0 17 86-103 51-67 (114)
8 1oqw_A Fimbrial protein; type 13.9 3.9E+02 0.013 21.9 6.3 35 335-369 3-37 (144)
9 3aqe_A Receptor activity-modif 13.0 52 0.0018 26.9 0.5 8 226-233 62-69 (91)
10 1vry_A Glycine receptor alpha- 12.9 1.5E+02 0.0053 23.1 3.2 35 332-366 31-65 (76)
No 1
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=30.82 E-value=18 Score=31.07 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=24.1
Q ss_pred hhhhhccCCChHHHHHHHHhcCCCcchhhhhhhcc
Q 047604 186 GVGTALGELPPYFISRAASISGSRLDAMDEFDDSS 220 (382)
Q Consensus 186 G~GTAiGELPPYf~araArlsG~~~~e~ee~~~~~ 220 (382)
|-||++||+|. =++.++..+.|++..|+...
T Consensus 6 G~Gt~L~dIp~----V~~~i~k~k~d~Lk~LH~il 36 (131)
T 2jx3_A 6 GKGQKLCEIER----IHFFLSKKKTDELRNLHKLL 36 (131)
T ss_dssp SCTTCTTTCHH----HHHHHHTCCHHHHHHHHHHT
T ss_pred CCCccccccHH----HHHHHcccCHHHHHHHHHHH
Confidence 78999999995 34567777888888777643
No 2
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=28.39 E-value=32 Score=25.49 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.2
Q ss_pred cCCChHHHHHHHHhcCCCcchhhh
Q 047604 192 GELPPYFISRAASISGSRLDAMDE 215 (382)
Q Consensus 192 GELPPYf~araArlsG~~~~e~ee 215 (382)
||+|+|.+-.-.+.+|.+.||+.+
T Consensus 46 ~ei~~g~lk~Ilkqagl~~eef~~ 69 (70)
T 1whz_A 46 GELPKGTFKRILRDAGLTEEEFHN 69 (70)
T ss_dssp SSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCCHHHHhh
Confidence 399999999999999988777654
No 3
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=20.09 E-value=1.8e+02 Score=24.18 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhhccCC
Q 047604 86 RFGLWWVALGVASSIGLG 103 (382)
Q Consensus 86 ~~~~wWvgLGVLSSVGLG 103 (382)
..++||. .-.++.||.|
T Consensus 54 ~~a~y~~-~~t~tTvGyG 70 (148)
T 3vou_A 54 LDALYFS-VVTLTTVGDG 70 (148)
T ss_dssp HHHHHHH-HHHHTTCCCS
T ss_pred HHHHHHH-HHHHHccCCC
Confidence 3466664 5688888866
No 4
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Probab=20.01 E-value=22 Score=35.36 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=7.4
Q ss_pred hhchhhHHHhHhhhhcCCCCC
Q 047604 112 YLGPHIALFTIKAMQCGRVDL 132 (382)
Q Consensus 112 yLgPHIa~vtlaA~eC~sl~F 132 (382)
-|||.|..||.||.-|+++--
T Consensus 323 ~LgPyi~nVt~aa~~~~~~~~ 343 (350)
T 1fcq_A 323 ELGPAVKRIALNNNANDRLTV 343 (350)
T ss_dssp THHHHHHC-------------
T ss_pred cchHHHHHHHHHHHhhcceee
Confidence 589999999999999998755
No 5
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=16.64 E-value=1.3e+02 Score=27.20 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=23.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHH-HHHHHhhH
Q 047604 326 KKWDFSFASVWNTIVWLMLMNF-FVKIVTDT 355 (382)
Q Consensus 326 ~~~~~~ls~~~~~~V~~mi~yF-~iSiVns~ 355 (382)
-+++..++.+.|-+++..++|| ++..+|.+
T Consensus 90 i~yG~Fi~avInFlIIA~vIYFliVk~iNkl 120 (174)
T 2oar_A 90 IDLNVLLSAAINFFLIAFAVYFLVVLPYNTL 120 (174)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556668999999999999954 67778887
No 6
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=16.28 E-value=1.5e+02 Score=24.66 Aligned_cols=31 Identities=26% Similarity=0.565 Sum_probs=19.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 047604 64 GILLVTIDGPHEKHLEELSEYFRFGLWWVALGVASSIGLG 103 (382)
Q Consensus 64 ~~~l~~i~GpH~~~v~~~~~~~~~~~wWvgLGVLSSVGLG 103 (382)
....++.+++...|. .++||. .--++.||.|
T Consensus 31 ~~~~~~~e~~~~~~~--------~a~y~~-~~T~tTvGyG 61 (137)
T 4h33_A 31 PVPMVFIEPEINNYP--------DALWWA-IVTATTVGYG 61 (137)
T ss_dssp HHHHHHHCSSCCSHH--------HHHHHH-HHHHTTCCCS
T ss_pred HHHHHHHHcCCCCHH--------HHHHHH-HHHHHcccCC
Confidence 344556666655544 366775 4557889876
No 7
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=14.00 E-value=2.5e+02 Score=22.55 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhhccCC
Q 047604 86 RFGLWWVALGVASSIGLG 103 (382)
Q Consensus 86 ~~~~wWvgLGVLSSVGLG 103 (382)
..++||. .-.++.||.|
T Consensus 51 ~~a~y~~-~~T~tTvGyG 67 (114)
T 2q67_A 51 IDALYFS-VVTLTTVGAG 67 (114)
T ss_dssp HHHHHHH-HHHHTSCCCS
T ss_pred HHHHHHH-HHHhcceeCC
Confidence 3466766 4578888876
No 8
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=13.89 E-value=3.9e+02 Score=21.86 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 047604 335 VWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDKEIA 369 (382)
Q Consensus 335 ~~~~~V~~mi~yF~iSiVns~AQ~y~k~~~~~~~~ 369 (382)
+.|.+|+++|+-.+.+|.--.-|+|..|.+.++..
T Consensus 3 LiEllivi~Ii~il~~ia~p~~~~~~~~~~~~~~~ 37 (144)
T 1oqw_A 3 LIELMIVVAIIGILAAIAIPQYQNYVARSEGASAL 37 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777776677777776655443
No 9
>3aqe_A Receptor activity-modifying protein 2; transmembrane, GPCR, adrenomedullin, trafficking, CLR, CGRP, endoplasmic reticulum, disease; 2.00A {Homo sapiens} PDB: 3aqf_A 2xvt_A
Probab=13.04 E-value=52 Score=26.92 Aligned_cols=8 Identities=50% Similarity=0.841 Sum_probs=7.3
Q ss_pred CCCChhhh
Q 047604 226 VVPNPLFD 233 (382)
Q Consensus 226 s~PNplFD 233 (382)
-||||++|
T Consensus 62 ~wPNplve 69 (91)
T 3aqe_A 62 GFPNPLAE 69 (91)
T ss_dssp CSSCHHHH
T ss_pred CCCcHHHH
Confidence 79999988
No 10
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=12.93 E-value=1.5e+02 Score=23.15 Aligned_cols=35 Identities=11% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q 047604 332 FASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDK 366 (382)
Q Consensus 332 ls~~~~~~V~~mi~yF~iSiVns~AQ~y~k~~~~~ 366 (382)
.....|..+++-.+|-+.+.++-.+-+|..|++++
T Consensus 31 YikAiDvw~~~C~~FVF~aLlEya~V~y~~r~~~~ 65 (76)
T 1vry_A 31 YVKAIDIWLAVCLLFVFSALLEYAAVNFVSRKKKK 65 (76)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 55677888888888888999999999998877664
Done!