Query 047604
Match_columns 382
No_of_seqs 125 out of 152
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 22:45:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047604.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047604hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ob1c2 g.3.11.4 (C:46-96) Mer 31.1 6.1 0.00044 27.5 0.5 14 226-241 36-49 (51)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 17.5 27 0.0019 22.7 1.6 19 232-254 3-21 (37)
3 d2nmza1 b.50.1.1 (A:1-99) Huma 17.0 5.6 0.00041 31.2 -2.2 12 17-28 2-13 (99)
4 d1r3jc_ f.14.1.1 (C:) Potassiu 15.0 1.4E+02 0.01 21.6 5.6 35 332-366 66-100 (103)
5 d3ecga1 b.50.1.1 (A:1-99) Huma 14.8 6.9 0.00051 30.6 -2.2 11 17-27 2-12 (99)
6 d3b60a2 f.37.1.1 (A:10-328) Mu 10.9 1.7E+02 0.012 22.9 5.3 13 39-51 4-16 (319)
7 d1whza_ d.50.3.2 (A:) Hypothet 9.8 76 0.0055 22.2 2.4 25 192-216 46-70 (70)
8 d2ejna1 a.101.1.1 (A:1-72) All 9.4 54 0.004 23.9 1.4 16 69-84 13-28 (72)
9 d1osda_ d.58.17.1 (A:) Mercuri 9.4 28 0.0021 24.1 -0.2 11 232-242 7-17 (72)
10 d1cpza_ d.58.17.1 (A:) Copper 8.0 31 0.0022 23.6 -0.5 10 232-241 4-13 (68)
No 1
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=31.09 E-value=6.1 Score=27.55 Aligned_cols=14 Identities=50% Similarity=1.020 Sum_probs=11.4
Q ss_pred CCCChhhhhhhhhccc
Q 047604 226 VVPNPLFDLAGIMCGQ 241 (382)
Q Consensus 226 s~PNplFDLaGi~CGh 241 (382)
-=|||+|| ||.|-|
T Consensus 36 p~~~~~~~--GVFCS~ 49 (51)
T d1ob1c2 36 PDSYPLFD--GIFCSH 49 (51)
T ss_dssp TTCCEEGG--GTEECC
T ss_pred CCCCcccc--eEEeec
Confidence 34999997 888876
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=17.51 E-value=27 Score=22.71 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=13.6
Q ss_pred hhhhhhhccccchhHHHHHHHHH
Q 047604 232 FDLAGIMCGQFGVPFWKFFLATL 254 (382)
Q Consensus 232 FDLaGi~CGhFlvPFWtFFgATl 254 (382)
+|+|-++ +.-||.||-+..
T Consensus 3 ~D~Aql~----ly~Fw~FFagLi 21 (37)
T d1eysh2 3 IDAAQIT----IWAFWLFFFGLI 21 (37)
T ss_dssp CCHHHHH----HHHHHHHHHHHH
T ss_pred ccHHHHH----HHHHHHHHHHHH
Confidence 5777765 567999987654
No 3
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=16.96 E-value=5.6 Score=31.17 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=6.9
Q ss_pred cCcccccchHHH
Q 047604 17 NLTLTTQPFKTI 28 (382)
Q Consensus 17 ~l~Lwr~Pi~TL 28 (382)
+++||+||+.|.
T Consensus 2 qitLwqRP~vtv 13 (99)
T d2nmza1 2 QITLWKRPLVTI 13 (99)
T ss_dssp EECSSSCCEEEE
T ss_pred cccccCCCeEEE
Confidence 356666666553
No 4
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=14.99 E-value=1.4e+02 Score=21.58 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q 047604 332 FASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDK 366 (382)
Q Consensus 332 ls~~~~~~V~~mi~yF~iSiVns~AQ~y~k~~~~~ 366 (382)
.+.++-.+++++=+.++..++..++..+.+|++||
T Consensus 66 ~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~r 100 (103)
T d1r3jc_ 66 WGRCVAVVVMVAGITSFGLVTAALATWFVGREQER 100 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666555555444444455566666666665554
No 5
>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=14.76 E-value=6.9 Score=30.64 Aligned_cols=11 Identities=27% Similarity=0.450 Sum_probs=6.5
Q ss_pred cCcccccchHH
Q 047604 17 NLTLTTQPFKT 27 (382)
Q Consensus 17 ~l~Lwr~Pi~T 27 (382)
+++||+||+.|
T Consensus 2 qitLwqRP~vt 12 (99)
T d3ecga1 2 QFSLWKRPVVT 12 (99)
T ss_dssp EECSSSCCEEE
T ss_pred cccccCCCeEE
Confidence 35666666654
No 6
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=10.94 E-value=1.7e+02 Score=22.94 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhcc
Q 047604 39 LKRSVLYLLAKGG 51 (382)
Q Consensus 39 l~~~~~~l~~~~~ 51 (382)
+|+...|+-.+++
T Consensus 4 ~krl~~~~~~~k~ 16 (319)
T d3b60a2 4 FRRLWPTIAPFKA 16 (319)
T ss_dssp HHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555433443
No 7
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}
Probab=9.83 E-value=76 Score=22.19 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=20.2
Q ss_pred cCCChHHHHHHHHhcCCCcchhhhh
Q 047604 192 GELPPYFISRAASISGSRLDAMDEF 216 (382)
Q Consensus 192 GELPPYf~araArlsG~~~~e~ee~ 216 (382)
+||||.-+-.--+-+|.+.||+.+|
T Consensus 46 kei~~gtl~~Ilkqagl~~eef~~L 70 (70)
T d1whza_ 46 GELPKGTFKRILRDAGLTEEEFHNL 70 (70)
T ss_dssp SSCCHHHHHHHHHHTTCCHHHHHHC
T ss_pred CccCHHHHHHHHHHhCCCHHHHHhC
Confidence 6888888888888899888877653
No 8
>d2ejna1 a.101.1.1 (A:1-72) Allergen Fel d I-A chain {Cat (Felis catus) [TaxId: 9685]}
Probab=9.44 E-value=54 Score=23.93 Aligned_cols=16 Identities=19% Similarity=0.571 Sum_probs=13.7
Q ss_pred hcCCcchHHHHHHHHH
Q 047604 69 TIDGPHEKHLEELSEY 84 (382)
Q Consensus 69 ~i~GpH~~~v~~~~~~ 84 (382)
++.|.+++|++++++|
T Consensus 13 Fl~GT~eeYveyvkqY 28 (72)
T d2ejna1 13 FLTGTPDEYVEQVAQY 28 (72)
T ss_dssp HHHSCHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHh
Confidence 4678999999999886
No 9
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}
Probab=9.35 E-value=28 Score=24.08 Aligned_cols=11 Identities=18% Similarity=0.727 Sum_probs=8.9
Q ss_pred hhhhhhhcccc
Q 047604 232 FDLAGIMCGQF 242 (382)
Q Consensus 232 FDLaGi~CGhF 242 (382)
|++-||+|+|-
T Consensus 7 l~V~Gm~C~~C 17 (72)
T d1osda_ 7 LSVPGMTCSAC 17 (72)
T ss_dssp EECTTCCSTTH
T ss_pred EEECCcccHHH
Confidence 67788999885
No 10
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}
Probab=8.02 E-value=31 Score=23.60 Aligned_cols=10 Identities=30% Similarity=0.989 Sum_probs=0.0
Q ss_pred hhhhhhhccc
Q 047604 232 FDLAGIMCGQ 241 (382)
Q Consensus 232 FDLaGi~CGh 241 (382)
|++-||+|+|
T Consensus 4 l~V~GM~C~~ 13 (68)
T d1cpza_ 4 FSVKGMSCNH 13 (68)
T ss_dssp EEESCCCSSS
T ss_pred EEECCeEcHH
Done!