Query 047607
Match_columns 352
No_of_seqs 229 out of 2152
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 12:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.3E-44 1.8E-48 361.3 28.4 326 12-346 6-350 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.7E-30 5.8E-35 235.8 14.9 186 159-346 1-190 (287)
3 PLN03210 Resistant to P. syrin 99.9 4.1E-23 8.8E-28 219.7 20.7 184 153-346 183-383 (1153)
4 PRK00411 cdc6 cell division co 99.4 7E-12 1.5E-16 119.6 17.5 174 152-326 28-220 (394)
5 TIGR02928 orc1/cdc6 family rep 99.3 1.4E-10 2.9E-15 109.6 17.5 174 153-327 14-213 (365)
6 PF05729 NACHT: NACHT domain 99.3 4.8E-11 1.1E-15 99.3 12.5 142 176-326 1-163 (166)
7 PF01637 Arch_ATPase: Archaeal 99.2 1.2E-10 2.6E-15 102.4 8.8 166 156-327 1-205 (234)
8 TIGR03015 pepcterm_ATPase puta 99.1 8.7E-09 1.9E-13 93.0 19.9 148 173-328 41-207 (269)
9 PRK06893 DNA replication initi 99.1 7.4E-10 1.6E-14 97.5 9.4 127 174-330 38-178 (229)
10 COG1474 CDC6 Cdc6-related prot 99.0 2.3E-08 5E-13 93.5 19.1 171 153-326 16-203 (366)
11 COG2256 MGS1 ATPase related to 99.0 2.4E-09 5.3E-14 98.0 9.7 142 154-326 24-176 (436)
12 PF13173 AAA_14: AAA domain 98.9 2.1E-09 4.5E-14 85.8 6.7 120 175-318 2-127 (128)
13 PTZ00112 origin recognition co 98.9 1.9E-08 4.2E-13 100.7 14.2 190 153-346 754-970 (1164)
14 PRK13342 recombination factor 98.9 1.3E-08 2.9E-13 97.5 11.0 143 154-327 12-165 (413)
15 cd00009 AAA The AAA+ (ATPases 98.9 1.9E-08 4.1E-13 81.3 9.8 124 157-297 1-131 (151)
16 PRK04841 transcriptional regul 98.8 3.6E-08 7.7E-13 104.0 14.2 169 149-328 9-201 (903)
17 TIGR00635 ruvB Holliday juncti 98.8 2E-08 4.3E-13 92.4 10.7 161 154-329 4-175 (305)
18 KOG2028 ATPase related to the 98.8 2.4E-08 5.3E-13 90.2 10.7 146 155-326 139-294 (554)
19 PF13401 AAA_22: AAA domain; P 98.8 8.5E-09 1.8E-13 82.4 6.4 117 174-295 3-125 (131)
20 TIGR03420 DnaA_homol_Hda DnaA 98.8 2.4E-08 5.2E-13 87.7 9.0 138 159-326 22-172 (226)
21 PRK07003 DNA polymerase III su 98.8 8.5E-08 1.8E-12 95.5 13.1 166 154-330 16-195 (830)
22 TIGR02903 spore_lon_C ATP-depe 98.8 2.5E-06 5.4E-11 85.5 23.6 172 154-328 154-368 (615)
23 PF13191 AAA_16: AAA ATPase do 98.8 2.6E-08 5.5E-13 84.4 8.0 45 156-200 2-49 (185)
24 PRK12402 replication factor C 98.8 7.5E-08 1.6E-12 89.8 11.9 169 154-329 15-200 (337)
25 PRK08727 hypothetical protein; 98.7 1.1E-07 2.3E-12 84.0 11.3 145 155-329 20-178 (233)
26 PRK00080 ruvB Holliday junctio 98.7 2.4E-07 5.3E-12 86.1 13.1 162 154-330 25-197 (328)
27 PRK14949 DNA polymerase III su 98.7 1.7E-07 3.6E-12 95.1 12.1 166 154-328 16-193 (944)
28 PRK14960 DNA polymerase III su 98.7 2.3E-07 5E-12 91.4 12.7 168 154-330 15-194 (702)
29 PTZ00202 tuzin; Provisional 98.7 5.2E-07 1.1E-11 84.5 14.3 161 151-326 259-434 (550)
30 TIGR01242 26Sp45 26S proteasom 98.7 2.4E-07 5.2E-12 87.4 12.3 165 154-343 122-323 (364)
31 PRK14961 DNA polymerase III su 98.7 4.4E-07 9.5E-12 85.5 14.0 165 154-328 16-193 (363)
32 PLN03025 replication factor C 98.7 3E-07 6.5E-12 85.2 12.2 157 154-330 13-175 (319)
33 PRK00440 rfc replication facto 98.7 4E-07 8.7E-12 84.2 13.0 157 154-330 17-178 (319)
34 PRK14963 DNA polymerase III su 98.6 3.8E-07 8.2E-12 89.0 13.2 166 154-330 14-192 (504)
35 PRK13341 recombination factor 98.6 1.5E-07 3.2E-12 95.3 10.6 143 154-327 28-182 (725)
36 cd01128 rho_factor Transcripti 98.6 6.2E-08 1.3E-12 85.9 7.0 93 174-268 15-114 (249)
37 PRK08084 DNA replication initi 98.6 2.9E-07 6.2E-12 81.4 11.2 144 156-329 25-183 (235)
38 PRK04195 replication factor C 98.6 2.7E-07 5.8E-12 90.3 11.5 151 154-330 14-177 (482)
39 PRK12323 DNA polymerase III su 98.6 3.3E-07 7.1E-12 90.2 11.8 169 154-329 16-199 (700)
40 PRK14957 DNA polymerase III su 98.6 4.5E-07 9.8E-12 88.8 12.5 153 154-327 16-192 (546)
41 PRK14962 DNA polymerase III su 98.6 5.6E-07 1.2E-11 87.1 12.8 165 154-328 14-191 (472)
42 PRK06645 DNA polymerase III su 98.6 6.7E-07 1.5E-11 87.0 13.3 171 154-330 21-204 (507)
43 PRK14951 DNA polymerase III su 98.6 6.1E-07 1.3E-11 89.1 13.0 172 154-330 16-200 (618)
44 PRK14964 DNA polymerase III su 98.6 7.7E-07 1.7E-11 86.0 12.4 168 154-330 13-192 (491)
45 PRK14956 DNA polymerase III su 98.6 3.4E-07 7.3E-12 87.7 9.7 168 154-330 18-197 (484)
46 PRK14958 DNA polymerase III su 98.5 1E-06 2.2E-11 86.1 12.3 166 154-328 16-193 (509)
47 PRK05564 DNA polymerase III su 98.5 1.8E-06 3.8E-11 79.8 13.2 153 154-326 4-165 (313)
48 PRK09087 hypothetical protein; 98.5 7.9E-07 1.7E-11 78.0 10.3 117 174-329 43-169 (226)
49 PRK03992 proteasome-activating 98.5 2.5E-06 5.5E-11 81.0 14.6 166 154-343 131-332 (389)
50 TIGR02881 spore_V_K stage V sp 98.5 1.3E-06 2.8E-11 78.6 11.8 155 155-329 7-194 (261)
51 PRK09376 rho transcription ter 98.5 3.8E-07 8.3E-12 84.7 8.4 99 166-268 159-267 (416)
52 COG2909 MalT ATP-dependent tra 98.5 3.1E-06 6.7E-11 84.6 14.8 164 153-328 18-209 (894)
53 PRK07994 DNA polymerase III su 98.5 8.4E-07 1.8E-11 88.3 10.7 165 154-327 16-192 (647)
54 PRK08691 DNA polymerase III su 98.5 1.3E-06 2.9E-11 86.8 11.6 166 154-330 16-195 (709)
55 PRK05642 DNA replication initi 98.5 9.9E-07 2.1E-11 77.9 9.4 125 175-329 45-182 (234)
56 TIGR02397 dnaX_nterm DNA polym 98.4 4.3E-06 9.2E-11 78.6 14.2 153 154-328 14-191 (355)
57 PRK14969 DNA polymerase III su 98.4 2.6E-06 5.7E-11 83.8 12.9 166 154-328 16-193 (527)
58 PRK07764 DNA polymerase III su 98.4 1.9E-06 4.2E-11 88.4 12.4 163 154-326 15-192 (824)
59 TIGR00767 rho transcription te 98.4 1.2E-06 2.5E-11 81.9 9.6 93 174-268 167-266 (415)
60 TIGR03345 VI_ClpV1 type VI sec 98.4 2.5E-06 5.4E-11 88.5 12.9 153 154-325 187-362 (852)
61 PRK14952 DNA polymerase III su 98.4 3.2E-06 7E-11 83.6 13.1 166 154-328 13-192 (584)
62 PRK14955 DNA polymerase III su 98.4 1.5E-06 3.2E-11 82.9 9.8 170 154-326 16-199 (397)
63 TIGR02639 ClpA ATP-dependent C 98.4 2E-06 4.4E-11 88.2 11.4 155 154-326 182-358 (731)
64 PRK14970 DNA polymerase III su 98.4 5.4E-06 1.2E-10 78.4 13.0 157 154-330 17-184 (367)
65 PRK05896 DNA polymerase III su 98.4 3.1E-06 6.6E-11 83.3 11.2 166 154-328 16-193 (605)
66 TIGR02880 cbbX_cfxQ probable R 98.4 7.2E-06 1.6E-10 74.5 13.0 154 155-328 23-210 (284)
67 PRK14959 DNA polymerase III su 98.4 4E-06 8.7E-11 82.9 11.9 166 154-329 16-194 (624)
68 PRK07940 DNA polymerase III su 98.3 6.3E-06 1.4E-10 78.0 12.6 161 154-325 5-188 (394)
69 PHA02544 44 clamp loader, smal 98.3 5.6E-06 1.2E-10 76.5 12.0 143 154-324 21-171 (316)
70 TIGR03689 pup_AAA proteasome A 98.3 5.1E-06 1.1E-10 80.7 11.9 162 154-327 182-379 (512)
71 TIGR00678 holB DNA polymerase 98.3 1.5E-05 3.2E-10 68.0 13.0 137 165-325 3-167 (188)
72 PRK11331 5-methylcytosine-spec 98.3 6.4E-06 1.4E-10 78.2 11.5 69 154-225 175-243 (459)
73 KOG2227 Pre-initiation complex 98.3 3.3E-05 7.3E-10 72.5 15.9 190 153-350 149-363 (529)
74 CHL00181 cbbX CbbX; Provisiona 98.3 1.6E-05 3.5E-10 72.2 13.8 155 155-329 24-212 (287)
75 PRK09111 DNA polymerase III su 98.3 7.1E-06 1.5E-10 81.6 12.2 171 154-329 24-207 (598)
76 PF00308 Bac_DnaA: Bacterial d 98.3 2E-06 4.4E-11 75.1 7.4 157 155-330 10-183 (219)
77 PTZ00454 26S protease regulato 98.3 2.5E-05 5.5E-10 74.1 15.2 167 154-343 145-346 (398)
78 PRK14954 DNA polymerase III su 98.3 1.3E-05 2.7E-10 80.0 13.6 171 154-326 16-199 (620)
79 PF05496 RuvB_N: Holliday junc 98.3 3.9E-06 8.4E-11 72.2 8.3 144 154-328 24-194 (233)
80 PRK09112 DNA polymerase III su 98.3 6.6E-06 1.4E-10 76.8 10.4 168 154-326 23-213 (351)
81 TIGR00763 lon ATP-dependent pr 98.3 0.00018 3.8E-09 74.6 21.8 159 153-326 319-505 (775)
82 KOG2543 Origin recognition com 98.2 1.1E-05 2.4E-10 73.8 10.6 164 153-325 5-192 (438)
83 PRK14971 DNA polymerase III su 98.2 2.2E-05 4.7E-10 78.6 13.4 150 154-328 17-195 (614)
84 PRK10865 protein disaggregatio 98.2 1.7E-05 3.6E-10 82.6 13.0 153 154-326 178-354 (857)
85 CHL00095 clpC Clp protease ATP 98.2 9.1E-06 2E-10 84.5 11.1 154 154-325 179-353 (821)
86 PRK06305 DNA polymerase III su 98.2 2.4E-05 5.2E-10 75.7 13.0 163 154-327 17-194 (451)
87 PRK07471 DNA polymerase III su 98.2 4.2E-05 9.2E-10 71.8 14.3 170 154-326 19-213 (365)
88 PRK14953 DNA polymerase III su 98.2 3.7E-05 8E-10 74.9 14.2 150 154-328 16-193 (486)
89 TIGR03346 chaperone_ClpB ATP-d 98.2 1.6E-05 3.5E-10 82.9 12.3 154 155-326 174-349 (852)
90 TIGR00362 DnaA chromosomal rep 98.2 9.2E-06 2E-10 77.8 9.8 137 175-330 136-285 (405)
91 PRK12422 chromosomal replicati 98.2 8.8E-06 1.9E-10 78.4 9.5 134 175-329 141-287 (445)
92 PRK14950 DNA polymerase III su 98.2 3.2E-05 7E-10 77.4 13.9 167 154-329 16-195 (585)
93 PRK14088 dnaA chromosomal repl 98.2 9.4E-06 2E-10 78.3 9.7 136 175-329 130-279 (440)
94 PRK14965 DNA polymerase III su 98.2 1.7E-05 3.7E-10 79.0 11.7 164 154-327 16-192 (576)
95 PRK07133 DNA polymerase III su 98.2 2.6E-05 5.6E-10 78.4 12.8 160 154-327 18-191 (725)
96 PRK00149 dnaA chromosomal repl 98.1 9.8E-06 2.1E-10 78.7 9.3 135 175-328 148-295 (450)
97 KOG0989 Replication factor C, 98.1 1.1E-05 2.4E-10 71.8 8.6 167 153-334 35-209 (346)
98 PRK08903 DnaA regulatory inact 98.1 9.5E-06 2.1E-10 71.3 8.3 138 155-326 19-170 (227)
99 PRK08451 DNA polymerase III su 98.1 5.2E-05 1.1E-09 74.2 13.9 167 154-329 14-192 (535)
100 PTZ00361 26 proteosome regulat 98.1 1.5E-05 3.3E-10 76.2 10.0 164 155-342 184-383 (438)
101 TIGR01241 FtsH_fam ATP-depende 98.1 8.6E-05 1.9E-09 73.0 15.5 166 154-343 55-255 (495)
102 PRK11034 clpA ATP-dependent Cl 98.1 1.9E-05 4.1E-10 80.6 11.1 155 155-326 187-362 (758)
103 smart00382 AAA ATPases associa 98.1 1.2E-05 2.5E-10 64.2 7.5 90 175-271 2-92 (148)
104 PRK14087 dnaA chromosomal repl 98.1 1.2E-05 2.7E-10 77.6 8.9 137 175-328 141-290 (450)
105 PF00004 AAA: ATPase family as 98.1 1.3E-05 2.7E-10 63.8 7.3 69 178-269 1-70 (132)
106 PRK06647 DNA polymerase III su 98.1 6.7E-05 1.4E-09 74.4 13.7 166 154-328 16-193 (563)
107 PRK14948 DNA polymerase III su 98.1 7.3E-05 1.6E-09 74.9 14.0 168 154-328 16-195 (620)
108 PRK06620 hypothetical protein; 98.1 5.7E-06 1.2E-10 71.9 5.4 109 176-328 45-162 (214)
109 COG0466 Lon ATP-dependent Lon 98.1 0.00051 1.1E-08 68.0 19.0 161 153-328 322-510 (782)
110 KOG2004 Mitochondrial ATP-depe 98.0 0.00084 1.8E-08 66.4 19.9 160 153-327 410-597 (906)
111 PRK05563 DNA polymerase III su 98.0 9.5E-05 2E-09 73.5 13.9 165 154-328 16-193 (559)
112 PF05621 TniB: Bacterial TniB 98.0 7.2E-05 1.6E-09 67.3 11.5 113 154-268 34-156 (302)
113 CHL00176 ftsH cell division pr 98.0 6.1E-05 1.3E-09 75.6 12.3 152 154-328 183-368 (638)
114 PRK10787 DNA-binding ATP-depen 98.0 0.00046 1E-08 71.1 19.0 159 153-327 321-507 (784)
115 COG1373 Predicted ATPase (AAA+ 98.0 6E-05 1.3E-09 71.8 11.3 134 159-320 22-161 (398)
116 PF04665 Pox_A32: Poxvirus A32 98.0 2.4E-05 5.1E-10 68.6 7.6 36 176-214 14-49 (241)
117 KOG0733 Nuclear AAA ATPase (VC 98.0 0.00011 2.5E-09 71.1 12.5 91 155-268 191-293 (802)
118 PRK14086 dnaA chromosomal repl 98.0 4.6E-05 9.9E-10 75.3 10.1 137 175-330 314-463 (617)
119 PRK07399 DNA polymerase III su 98.0 0.00018 3.8E-09 66.3 13.3 172 154-327 4-196 (314)
120 PRK08116 hypothetical protein; 97.9 1.5E-05 3.3E-10 71.7 5.7 103 176-296 115-221 (268)
121 PF13177 DNA_pol3_delta2: DNA 97.9 0.00012 2.5E-09 60.8 10.2 135 158-314 1-162 (162)
122 COG0593 DnaA ATPase involved i 97.9 4.4E-05 9.5E-10 71.8 7.8 142 174-335 112-266 (408)
123 COG0542 clpA ATP-binding subun 97.8 0.00073 1.6E-08 68.4 16.4 105 154-269 491-605 (786)
124 PRK08118 topology modulation p 97.8 9.5E-06 2.1E-10 67.7 2.7 35 177-211 3-37 (167)
125 PF05673 DUF815: Protein of un 97.8 0.00021 4.5E-09 62.5 10.8 150 153-330 26-211 (249)
126 TIGR01243 CDC48 AAA family ATP 97.8 0.00045 9.9E-09 71.2 15.1 166 155-343 454-652 (733)
127 TIGR02639 ClpA ATP-dependent C 97.8 0.00021 4.5E-09 73.6 11.9 160 153-326 453-662 (731)
128 PRK12608 transcription termina 97.8 0.00016 3.5E-09 67.2 10.0 104 163-268 120-231 (380)
129 TIGR01243 CDC48 AAA family ATP 97.8 0.0002 4.3E-09 73.8 11.7 150 154-326 178-359 (733)
130 COG1222 RPT1 ATP-dependent 26S 97.8 0.00094 2E-08 61.0 14.3 162 156-343 153-352 (406)
131 TIGR03346 chaperone_ClpB ATP-d 97.8 0.0004 8.6E-09 72.7 13.6 61 153-216 564-633 (852)
132 COG3899 Predicted ATPase [Gene 97.8 0.00022 4.7E-09 74.2 11.5 45 156-200 2-49 (849)
133 PRK10536 hypothetical protein; 97.7 0.00027 5.8E-09 62.4 10.2 54 155-211 56-109 (262)
134 TIGR00602 rad24 checkpoint pro 97.7 0.00013 2.8E-09 72.9 9.0 46 154-199 84-134 (637)
135 PRK12377 putative replication 97.7 0.00018 3.9E-09 63.8 8.8 102 174-295 100-205 (248)
136 PRK08058 DNA polymerase III su 97.7 0.00045 9.7E-09 64.2 11.8 162 155-325 6-181 (329)
137 KOG0741 AAA+-type ATPase [Post 97.7 0.00063 1.4E-08 65.0 12.7 126 174-325 537-685 (744)
138 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00041 8.8E-09 67.6 11.5 166 154-343 228-424 (489)
139 PRK10865 protein disaggregatio 97.7 0.00054 1.2E-08 71.6 12.9 61 153-216 567-636 (857)
140 PRK08181 transposase; Validate 97.7 5.8E-05 1.3E-09 67.8 5.0 104 168-295 101-208 (269)
141 PRK07261 topology modulation p 97.6 0.00015 3.3E-09 60.8 6.9 35 177-211 2-36 (171)
142 COG2812 DnaX DNA polymerase II 97.6 0.00022 4.8E-09 69.1 8.8 178 154-341 16-207 (515)
143 TIGR02640 gas_vesic_GvpN gas v 97.6 0.00082 1.8E-08 60.4 11.8 55 162-224 10-64 (262)
144 KOG0744 AAA+-type ATPase [Post 97.6 0.00058 1.2E-08 61.5 10.3 139 175-326 177-340 (423)
145 CHL00095 clpC Clp protease ATP 97.6 0.00018 3.8E-09 75.0 8.0 106 153-269 508-623 (821)
146 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00015 3.3E-09 75.4 7.5 47 153-199 565-620 (852)
147 PRK09361 radB DNA repair and r 97.6 0.00043 9.4E-09 60.7 9.1 89 174-267 22-117 (225)
148 smart00763 AAA_PrkA PrkA AAA d 97.6 0.00011 2.4E-09 68.0 5.3 45 155-199 52-102 (361)
149 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0011 2.4E-08 64.4 12.0 149 174-345 544-713 (802)
150 PRK06835 DNA replication prote 97.5 0.0048 1E-07 57.1 15.8 37 175-214 183-219 (329)
151 PF10443 RNA12: RNA12 protein; 97.5 0.002 4.3E-08 60.8 13.2 159 159-329 1-232 (431)
152 PRK06526 transposase; Provisio 97.5 0.0001 2.2E-09 65.8 4.3 26 174-199 97-122 (254)
153 KOG0991 Replication factor C, 97.5 0.00031 6.8E-09 60.4 6.9 46 154-199 27-72 (333)
154 PF13207 AAA_17: AAA domain; P 97.5 9.2E-05 2E-09 58.0 3.6 23 177-199 1-23 (121)
155 KOG1514 Origin recognition com 97.5 0.0023 4.9E-08 63.3 13.6 187 153-346 395-609 (767)
156 PF14516 AAA_35: AAA-like doma 97.5 0.0068 1.5E-07 56.4 16.1 169 153-326 10-214 (331)
157 PRK06921 hypothetical protein; 97.5 0.00011 2.4E-09 66.1 3.9 39 174-214 116-154 (266)
158 cd01393 recA_like RecA is a b 97.5 0.0015 3.3E-08 57.2 11.1 91 174-268 18-125 (226)
159 PRK04296 thymidine kinase; Pro 97.5 0.00021 4.5E-09 61.0 5.3 112 176-296 3-116 (190)
160 TIGR02237 recomb_radB DNA repa 97.4 0.00054 1.2E-08 59.3 8.0 90 174-268 11-108 (209)
161 COG0470 HolB ATPase involved i 97.4 0.001 2.2E-08 61.5 10.2 45 155-199 2-48 (325)
162 PRK12727 flagellar biosynthesi 97.4 0.0076 1.6E-07 58.8 15.9 25 175-199 350-374 (559)
163 PF12061 DUF3542: Protein of u 97.4 0.00026 5.6E-09 63.1 5.2 104 10-126 297-400 (402)
164 TIGR02012 tigrfam_recA protein 97.4 0.0005 1.1E-08 63.2 7.3 87 174-268 54-144 (321)
165 KOG0743 AAA+-type ATPase [Post 97.4 0.02 4.3E-07 54.2 17.8 133 175-342 235-397 (457)
166 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00074 1.6E-08 59.5 8.2 93 174-268 18-126 (235)
167 COG2255 RuvB Holliday junction 97.4 0.00029 6.3E-09 62.3 5.4 46 154-199 26-76 (332)
168 KOG0730 AAA+-type ATPase [Post 97.4 0.0033 7.1E-08 61.8 13.0 146 174-343 467-632 (693)
169 PRK05707 DNA polymerase III su 97.4 0.0033 7.1E-08 58.3 12.7 142 175-326 22-178 (328)
170 PRK08939 primosomal protein Dn 97.4 0.00056 1.2E-08 62.8 7.4 117 158-295 135-260 (306)
171 PF07693 KAP_NTPase: KAP famil 97.4 0.0049 1.1E-07 57.1 13.9 41 160-200 2-45 (325)
172 cd00983 recA RecA is a bacter 97.4 0.00052 1.1E-08 63.1 7.1 87 174-268 54-144 (325)
173 COG1223 Predicted ATPase (AAA+ 97.4 0.0019 4.1E-08 56.6 9.9 165 154-342 121-313 (368)
174 PLN00020 ribulose bisphosphate 97.3 0.00043 9.4E-09 64.0 6.2 26 174-199 147-172 (413)
175 COG0464 SpoVK ATPases of the A 97.3 0.0028 6.1E-08 62.4 12.5 146 174-342 275-441 (494)
176 PF00448 SRP54: SRP54-type pro 97.3 0.00082 1.8E-08 57.6 7.6 57 175-234 1-58 (196)
177 cd01394 radB RadB. The archaea 97.3 0.0022 4.8E-08 55.9 10.4 90 174-268 18-114 (218)
178 PRK09354 recA recombinase A; P 97.3 0.00074 1.6E-08 62.6 7.6 87 174-268 59-149 (349)
179 PRK09183 transposase/IS protei 97.3 0.00044 9.5E-09 62.0 6.0 25 175-199 102-126 (259)
180 PRK10733 hflB ATP-dependent me 97.3 0.0017 3.8E-08 65.8 10.7 151 155-328 153-337 (644)
181 PF08423 Rad51: Rad51; InterP 97.3 0.0017 3.6E-08 58.1 9.2 94 174-268 37-144 (256)
182 KOG2228 Origin recognition com 97.3 0.0059 1.3E-07 55.5 12.4 170 154-326 24-219 (408)
183 cd01120 RecA-like_NTPases RecA 97.3 0.0024 5.2E-08 52.2 9.5 40 177-219 1-40 (165)
184 PRK05541 adenylylsulfate kinas 97.2 0.00072 1.6E-08 56.8 6.3 37 174-213 6-42 (176)
185 PRK06696 uridine kinase; Valid 97.2 0.00051 1.1E-08 60.2 5.5 42 158-199 2-46 (223)
186 PRK11034 clpA ATP-dependent Cl 97.2 0.00089 1.9E-08 68.6 7.9 46 154-199 458-512 (758)
187 TIGR02238 recomb_DMC1 meiotic 97.2 0.0027 5.9E-08 58.4 10.4 94 174-268 95-202 (313)
188 PRK15455 PrkA family serine pr 97.2 0.0004 8.7E-09 67.8 4.9 46 154-199 76-127 (644)
189 COG1484 DnaC DNA replication p 97.2 0.002 4.3E-08 57.6 9.0 75 174-268 104-178 (254)
190 PRK07952 DNA replication prote 97.2 0.0026 5.6E-08 56.3 9.3 115 162-295 84-204 (244)
191 PRK04301 radA DNA repair and r 97.2 0.004 8.7E-08 57.6 11.1 93 174-268 101-209 (317)
192 KOG0728 26S proteasome regulat 97.1 0.015 3.2E-07 50.8 13.1 164 156-345 148-350 (404)
193 cd01131 PilT Pilus retraction 97.1 0.00057 1.2E-08 58.7 4.6 111 176-300 2-113 (198)
194 KOG0735 AAA+-type ATPase [Post 97.1 0.0013 2.8E-08 65.0 7.4 74 174-268 430-505 (952)
195 KOG0736 Peroxisome assembly fa 97.1 0.0074 1.6E-07 60.4 12.6 167 154-343 672-874 (953)
196 COG3903 Predicted ATPase [Gene 97.1 0.00018 3.8E-09 66.9 1.3 141 174-326 13-155 (414)
197 TIGR02239 recomb_RAD51 DNA rep 97.1 0.0041 8.8E-08 57.4 10.2 94 174-268 95-202 (316)
198 KOG0738 AAA+-type ATPase [Post 97.1 0.0043 9.3E-08 57.4 9.9 26 174-199 244-269 (491)
199 KOG1969 DNA replication checkp 97.1 0.0014 3.1E-08 65.0 7.3 73 174-269 325-399 (877)
200 PLN03187 meiotic recombination 97.1 0.004 8.7E-08 57.9 9.8 94 174-268 125-232 (344)
201 PRK06871 DNA polymerase III su 97.1 0.019 4E-07 53.1 14.0 156 161-326 9-179 (325)
202 KOG0734 AAA+-type ATPase conta 97.1 0.0067 1.4E-07 58.3 11.1 45 155-199 305-361 (752)
203 PF01695 IstB_IS21: IstB-like 97.1 0.0022 4.7E-08 54.1 7.2 74 174-268 46-119 (178)
204 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00072 1.6E-08 57.1 4.4 23 177-199 1-23 (183)
205 PRK00771 signal recognition pa 97.0 0.0061 1.3E-07 58.6 11.0 57 174-233 94-151 (437)
206 PF14532 Sigma54_activ_2: Sigm 97.0 0.00042 9.2E-09 55.8 2.7 43 157-199 1-45 (138)
207 PF00485 PRK: Phosphoribulokin 97.0 0.0073 1.6E-07 51.6 10.4 83 177-262 1-88 (194)
208 cd03115 SRP The signal recogni 97.0 0.0032 7E-08 52.6 8.0 23 177-199 2-24 (173)
209 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0034 7.4E-08 56.2 8.4 92 174-268 68-174 (274)
210 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0052 1.1E-07 54.4 9.6 89 174-268 20-137 (237)
211 cd01121 Sms Sms (bacterial rad 97.0 0.0033 7.2E-08 59.2 8.4 86 174-268 81-169 (372)
212 PTZ00088 adenylate kinase 1; P 97.0 0.00075 1.6E-08 59.2 3.9 23 177-199 8-30 (229)
213 PRK06067 flagellar accessory p 97.0 0.0066 1.4E-07 53.5 9.9 88 174-267 24-130 (234)
214 COG0542 clpA ATP-binding subun 97.0 0.0078 1.7E-07 61.1 11.3 152 155-326 171-346 (786)
215 COG0572 Udk Uridine kinase [Nu 96.9 0.0029 6.2E-08 54.5 7.0 26 174-199 7-32 (218)
216 COG2607 Predicted ATPase (AAA+ 96.9 0.0048 1E-07 53.5 8.2 46 154-199 60-109 (287)
217 PF13238 AAA_18: AAA domain; P 96.9 0.00079 1.7E-08 53.0 3.3 22 178-199 1-22 (129)
218 PF13671 AAA_33: AAA domain; P 96.9 0.00086 1.9E-08 54.0 3.5 23 177-199 1-23 (143)
219 PRK14527 adenylate kinase; Pro 96.9 0.0014 3E-08 56.0 4.9 26 174-199 5-30 (191)
220 KOG0652 26S proteasome regulat 96.9 0.063 1.4E-06 47.3 14.9 172 154-352 171-381 (424)
221 PHA00729 NTP-binding motif con 96.9 0.0014 3E-08 56.9 4.9 35 165-199 7-41 (226)
222 PRK06547 hypothetical protein; 96.9 0.0016 3.4E-08 54.6 5.0 34 166-199 6-39 (172)
223 cd03214 ABC_Iron-Siderophores_ 96.9 0.0032 7E-08 53.1 7.0 122 174-300 24-162 (180)
224 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.0039 8.5E-08 51.2 7.2 117 176-297 3-139 (159)
225 cd03238 ABC_UvrA The excision 96.9 0.004 8.6E-08 52.4 7.4 124 174-310 20-161 (176)
226 TIGR02858 spore_III_AA stage I 96.9 0.0075 1.6E-07 54.3 9.5 129 163-300 98-233 (270)
227 KOG0731 AAA+-type ATPase conta 96.9 0.015 3.3E-07 58.7 12.4 162 155-342 312-509 (774)
228 COG0468 RecA RecA/RadA recombi 96.9 0.0068 1.5E-07 54.5 9.1 90 174-268 59-152 (279)
229 PRK06090 DNA polymerase III su 96.9 0.037 7.9E-07 51.0 14.0 154 161-325 10-179 (319)
230 PRK09270 nucleoside triphospha 96.9 0.01 2.2E-07 52.1 10.2 27 173-199 31-57 (229)
231 PF00154 RecA: recA bacterial 96.8 0.0047 1E-07 56.7 8.1 88 174-269 52-143 (322)
232 PLN03186 DNA repair protein RA 96.8 0.013 2.9E-07 54.5 11.0 94 174-268 122-229 (342)
233 PF12775 AAA_7: P-loop contain 96.8 0.0021 4.5E-08 58.0 5.5 56 164-223 23-78 (272)
234 TIGR00554 panK_bact pantothena 96.8 0.01 2.2E-07 53.9 9.9 27 173-199 60-86 (290)
235 cd03216 ABC_Carb_Monos_I This 96.8 0.002 4.4E-08 53.4 5.0 116 174-300 25-146 (163)
236 TIGR00390 hslU ATP-dependent p 96.8 0.0031 6.7E-08 59.7 6.6 46 154-199 12-71 (441)
237 PRK10463 hydrogenase nickel in 96.8 0.0074 1.6E-07 54.5 8.8 33 167-199 96-128 (290)
238 PRK06964 DNA polymerase III su 96.8 0.04 8.8E-07 51.3 13.9 69 256-325 131-203 (342)
239 COG1102 Cmk Cytidylate kinase 96.8 0.0028 6E-08 51.6 5.3 44 177-234 2-45 (179)
240 COG3267 ExeA Type II secretory 96.8 0.036 7.7E-07 48.7 12.5 153 173-330 49-217 (269)
241 COG0563 Adk Adenylate kinase a 96.8 0.0019 4.1E-08 54.4 4.6 23 177-199 2-24 (178)
242 TIGR01817 nifA Nif-specific re 96.8 0.0098 2.1E-07 59.2 10.4 62 153-217 195-258 (534)
243 PRK06762 hypothetical protein; 96.8 0.0013 2.8E-08 54.7 3.5 25 175-199 2-26 (166)
244 PF07728 AAA_5: AAA domain (dy 96.8 0.004 8.8E-08 50.0 6.4 41 178-224 2-42 (139)
245 PRK08233 hypothetical protein; 96.8 0.0013 2.8E-08 55.4 3.5 25 175-199 3-27 (182)
246 COG1618 Predicted nucleotide k 96.8 0.0019 4.1E-08 52.5 4.2 25 176-200 6-30 (179)
247 PTZ00035 Rad51 protein; Provis 96.8 0.02 4.3E-07 53.3 11.6 94 174-268 117-224 (337)
248 PRK05480 uridine/cytidine kina 96.7 0.0015 3.2E-08 56.6 3.8 27 173-199 4-30 (209)
249 TIGR02236 recomb_radA DNA repa 96.7 0.012 2.5E-07 54.3 10.0 94 174-268 94-203 (310)
250 PRK04328 hypothetical protein; 96.7 0.0077 1.7E-07 53.7 8.5 88 174-267 22-138 (249)
251 TIGR02974 phageshock_pspF psp 96.7 0.011 2.5E-07 54.8 9.9 58 156-216 1-60 (329)
252 PRK07667 uridine kinase; Provi 96.7 0.0023 4.9E-08 54.8 4.9 37 163-199 3-41 (193)
253 COG2884 FtsE Predicted ATPase 96.7 0.0083 1.8E-07 50.3 7.9 123 174-302 27-203 (223)
254 PRK14722 flhF flagellar biosyn 96.7 0.0077 1.7E-07 56.6 8.7 58 175-233 137-195 (374)
255 COG4608 AppF ABC-type oligopep 96.7 0.0089 1.9E-07 53.0 8.5 124 174-303 38-177 (268)
256 PRK13531 regulatory ATPase Rav 96.7 0.0025 5.4E-08 61.5 5.4 44 154-199 20-63 (498)
257 PRK08769 DNA polymerase III su 96.7 0.037 8E-07 51.0 13.0 153 160-325 10-184 (319)
258 cd02025 PanK Pantothenate kina 96.7 0.0094 2E-07 52.1 8.7 23 177-199 1-23 (220)
259 cd02019 NK Nucleoside/nucleoti 96.7 0.0013 2.9E-08 46.0 2.7 23 177-199 1-23 (69)
260 cd03247 ABCC_cytochrome_bd The 96.7 0.0081 1.8E-07 50.5 8.0 127 174-310 27-169 (178)
261 TIGR00959 ffh signal recogniti 96.7 0.0098 2.1E-07 57.0 9.3 26 174-199 98-123 (428)
262 PRK14974 cell division protein 96.7 0.019 4.1E-07 53.3 10.9 92 174-268 139-233 (336)
263 COG1066 Sms Predicted ATP-depe 96.7 0.0096 2.1E-07 55.6 8.8 96 163-268 79-179 (456)
264 PRK10867 signal recognition pa 96.7 0.01 2.2E-07 57.0 9.3 26 174-199 99-124 (433)
265 PRK04132 replication factor C 96.7 0.018 4E-07 59.5 11.6 126 183-328 574-704 (846)
266 PTZ00301 uridine kinase; Provi 96.7 0.0017 3.7E-08 56.2 3.6 25 175-199 3-27 (210)
267 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0016 3.6E-08 55.1 3.5 26 174-199 2-27 (188)
268 PRK03839 putative kinase; Prov 96.7 0.0015 3.3E-08 55.0 3.3 23 177-199 2-24 (180)
269 TIGR03499 FlhF flagellar biosy 96.6 0.011 2.4E-07 53.6 9.0 88 174-266 193-281 (282)
270 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.018 3.9E-07 50.5 10.1 113 174-295 19-165 (229)
271 COG1136 SalX ABC-type antimicr 96.6 0.011 2.4E-07 51.4 8.4 129 174-310 30-215 (226)
272 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0094 2E-07 50.1 7.8 26 174-199 24-49 (177)
273 PRK09519 recA DNA recombinatio 96.6 0.007 1.5E-07 61.8 8.1 87 174-268 59-149 (790)
274 TIGR02902 spore_lonB ATP-depen 96.6 0.0035 7.6E-08 62.1 5.8 46 154-199 65-110 (531)
275 PRK13765 ATP-dependent proteas 96.6 0.0045 9.8E-08 62.2 6.6 74 154-232 31-104 (637)
276 PRK05201 hslU ATP-dependent pr 96.6 0.0076 1.6E-07 57.1 7.6 47 153-199 14-74 (443)
277 TIGR00235 udk uridine kinase. 96.6 0.0021 4.5E-08 55.6 3.6 26 174-199 5-30 (207)
278 PRK00279 adk adenylate kinase; 96.6 0.0035 7.5E-08 54.6 5.0 23 177-199 2-24 (215)
279 PF06309 Torsin: Torsin; Inte 96.6 0.0051 1.1E-07 48.2 5.3 46 154-199 25-77 (127)
280 TIGR00764 lon_rel lon-related 96.6 0.0072 1.6E-07 60.7 7.9 75 153-232 17-91 (608)
281 PRK12678 transcription termina 96.6 0.0046 1E-07 60.5 6.1 99 166-268 406-514 (672)
282 cd03246 ABCC_Protease_Secretio 96.6 0.0058 1.2E-07 51.2 6.1 26 174-199 27-52 (173)
283 cd02028 UMPK_like Uridine mono 96.5 0.0056 1.2E-07 51.7 5.9 23 177-199 1-23 (179)
284 PRK15429 formate hydrogenlyase 96.5 0.0054 1.2E-07 62.9 6.9 61 154-217 376-438 (686)
285 PF03205 MobB: Molybdopterin g 96.5 0.0041 8.9E-08 50.2 4.9 39 176-216 1-39 (140)
286 PF05659 RPW8: Arabidopsis bro 96.5 0.012 2.6E-07 47.7 7.6 110 5-130 5-114 (147)
287 PF00158 Sigma54_activat: Sigm 96.5 0.013 2.7E-07 48.9 7.9 59 156-217 1-61 (168)
288 cd03230 ABC_DR_subfamily_A Thi 96.5 0.0038 8.2E-08 52.3 4.9 121 174-301 25-160 (173)
289 PRK08699 DNA polymerase III su 96.5 0.028 6E-07 52.1 10.9 25 175-199 21-45 (325)
290 PRK11823 DNA repair protein Ra 96.5 0.0092 2E-07 57.8 8.0 86 174-268 79-167 (446)
291 KOG1051 Chaperone HSP104 and r 96.5 0.012 2.7E-07 60.6 9.1 102 154-269 562-672 (898)
292 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.0095 2.1E-07 48.3 7.0 105 174-301 25-132 (144)
293 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.0054 1.2E-07 55.0 6.0 40 174-216 35-74 (259)
294 PRK00625 shikimate kinase; Pro 96.5 0.0023 4.9E-08 53.7 3.3 23 177-199 2-24 (173)
295 PRK06002 fliI flagellum-specif 96.5 0.0089 1.9E-07 57.3 7.6 90 174-268 164-265 (450)
296 cd01129 PulE-GspE PulE/GspE Th 96.5 0.0061 1.3E-07 54.8 6.3 125 157-298 62-186 (264)
297 cd03228 ABCC_MRP_Like The MRP 96.5 0.0086 1.9E-07 50.0 6.8 26 174-199 27-52 (171)
298 PRK04040 adenylate kinase; Pro 96.5 0.0026 5.6E-08 54.1 3.7 25 175-199 2-26 (188)
299 cd03281 ABC_MSH5_euk MutS5 hom 96.5 0.003 6.5E-08 54.9 4.0 121 175-302 29-160 (213)
300 cd03283 ABC_MutS-like MutS-lik 96.5 0.0064 1.4E-07 52.2 5.9 24 176-199 26-49 (199)
301 TIGR01351 adk adenylate kinase 96.5 0.0038 8.1E-08 54.1 4.6 22 178-199 2-23 (210)
302 PRK00131 aroK shikimate kinase 96.5 0.0026 5.7E-08 53.0 3.5 26 174-199 3-28 (175)
303 PRK06217 hypothetical protein; 96.5 0.0049 1.1E-07 52.2 5.1 23 177-199 3-25 (183)
304 TIGR01420 pilT_fam pilus retra 96.5 0.0047 1E-07 57.8 5.5 112 174-298 121-232 (343)
305 TIGR00064 ftsY signal recognit 96.4 0.023 5E-07 51.3 9.6 39 174-215 71-109 (272)
306 KOG0739 AAA+-type ATPase [Post 96.4 0.033 7.1E-07 50.0 10.1 91 154-268 133-236 (439)
307 PRK14528 adenylate kinase; Pro 96.4 0.0048 1E-07 52.4 4.9 24 176-199 2-25 (186)
308 COG0488 Uup ATPase components 96.4 0.025 5.5E-07 55.7 10.4 134 174-311 347-510 (530)
309 PRK14529 adenylate kinase; Pro 96.4 0.013 2.9E-07 51.1 7.6 83 178-269 3-88 (223)
310 PF13481 AAA_25: AAA domain; P 96.4 0.017 3.8E-07 49.0 8.3 43 175-217 32-81 (193)
311 KOG0727 26S proteasome regulat 96.4 0.08 1.7E-06 46.4 12.1 44 156-199 157-213 (408)
312 PRK11889 flhF flagellar biosyn 96.4 0.022 4.7E-07 53.7 9.2 26 174-199 240-265 (436)
313 KOG0729 26S proteasome regulat 96.4 0.02 4.3E-07 50.5 8.4 49 156-207 179-240 (435)
314 PF06745 KaiC: KaiC; InterPro 96.4 0.0095 2.1E-07 52.2 6.7 88 174-267 18-125 (226)
315 PF08433 KTI12: Chromatin asso 96.4 0.0063 1.4E-07 54.8 5.6 25 176-200 2-26 (270)
316 PF03308 ArgK: ArgK protein; 96.4 0.0082 1.8E-07 52.9 6.1 62 162-224 14-77 (266)
317 cd02027 APSK Adenosine 5'-phos 96.4 0.013 2.8E-07 47.8 6.9 23 177-199 1-23 (149)
318 PF00910 RNA_helicase: RNA hel 96.4 0.0025 5.5E-08 48.9 2.5 22 178-199 1-22 (107)
319 COG1703 ArgK Putative periplas 96.4 0.0068 1.5E-07 54.3 5.4 62 163-225 37-100 (323)
320 PF13086 AAA_11: AAA domain; P 96.3 0.0098 2.1E-07 51.8 6.6 53 177-229 19-75 (236)
321 PRK14531 adenylate kinase; Pro 96.3 0.0061 1.3E-07 51.6 5.0 24 176-199 3-26 (183)
322 PRK12723 flagellar biosynthesi 96.3 0.026 5.5E-07 53.5 9.6 90 174-267 173-264 (388)
323 PRK07993 DNA polymerase III su 96.3 0.11 2.4E-06 48.4 13.7 155 161-325 9-179 (334)
324 PRK08533 flagellar accessory p 96.3 0.025 5.5E-07 49.7 9.1 49 174-227 23-71 (230)
325 PRK12724 flagellar biosynthesi 96.3 0.019 4E-07 54.6 8.5 25 175-199 223-247 (432)
326 TIGR02322 phosphon_PhnN phosph 96.3 0.0032 7E-08 53.0 3.2 24 176-199 2-25 (179)
327 TIGR01425 SRP54_euk signal rec 96.3 0.02 4.3E-07 54.7 8.8 26 174-199 99-124 (429)
328 PF02562 PhoH: PhoH-like prote 96.3 0.0058 1.3E-07 52.4 4.8 53 158-213 4-56 (205)
329 TIGR00416 sms DNA repair prote 96.3 0.014 3E-07 56.7 7.9 86 174-268 93-181 (454)
330 cd02023 UMPK Uridine monophosp 96.3 0.0027 5.9E-08 54.4 2.7 23 177-199 1-23 (198)
331 TIGR02655 circ_KaiC circadian 96.3 0.03 6.6E-07 54.9 10.2 97 165-267 251-363 (484)
332 PF00625 Guanylate_kin: Guanyl 96.3 0.0061 1.3E-07 51.5 4.8 36 175-213 2-37 (183)
333 PF13245 AAA_19: Part of AAA d 96.3 0.014 3E-07 41.7 5.8 26 174-199 9-34 (76)
334 KOG0737 AAA+-type ATPase [Post 96.3 0.094 2E-06 48.4 12.4 51 155-208 93-157 (386)
335 TIGR00708 cobA cob(I)alamin ad 96.3 0.029 6.3E-07 46.7 8.5 119 175-296 5-140 (173)
336 TIGR02030 BchI-ChlI magnesium 96.3 0.0064 1.4E-07 56.5 5.1 46 154-199 4-49 (337)
337 cd02020 CMPK Cytidine monophos 96.3 0.0032 6.9E-08 50.9 2.8 23 177-199 1-23 (147)
338 PRK13947 shikimate kinase; Pro 96.3 0.0038 8.2E-08 52.1 3.3 23 177-199 3-25 (171)
339 CHL00081 chlI Mg-protoporyphyr 96.3 0.0059 1.3E-07 56.8 4.8 46 154-199 17-62 (350)
340 PRK05439 pantothenate kinase; 96.3 0.042 9E-07 50.4 10.2 27 173-199 84-110 (311)
341 cd02021 GntK Gluconate kinase 96.3 0.0032 6.9E-08 51.3 2.7 23 177-199 1-23 (150)
342 TIGR03575 selen_PSTK_euk L-ser 96.3 0.032 7E-07 51.8 9.6 22 178-199 2-23 (340)
343 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0081 1.7E-07 47.9 4.9 38 162-199 7-46 (133)
344 KOG2170 ATPase of the AAA+ sup 96.2 0.011 2.4E-07 52.9 6.2 46 155-200 83-135 (344)
345 cd00227 CPT Chloramphenicol (C 96.2 0.0041 8.9E-08 52.2 3.3 24 176-199 3-26 (175)
346 cd00267 ABC_ATPase ABC (ATP-bi 96.2 0.0077 1.7E-07 49.5 4.9 126 175-310 25-153 (157)
347 PF00006 ATP-synt_ab: ATP synt 96.2 0.015 3.2E-07 50.5 6.8 89 175-268 15-116 (215)
348 PF01583 APS_kinase: Adenylyls 96.2 0.0059 1.3E-07 50.0 4.1 36 175-213 2-37 (156)
349 PRK10875 recD exonuclease V su 96.2 0.014 3.1E-07 58.5 7.6 56 175-230 167-222 (615)
350 PRK13949 shikimate kinase; Pro 96.2 0.0041 9E-08 51.9 3.3 23 177-199 3-25 (169)
351 smart00534 MUTSac ATPase domai 96.2 0.0018 4E-08 54.9 1.1 118 177-302 1-128 (185)
352 cd01428 ADK Adenylate kinase ( 96.2 0.0053 1.2E-07 52.2 4.0 22 178-199 2-23 (194)
353 PF05970 PIF1: PIF1-like helic 96.2 0.014 3E-07 55.1 7.1 38 162-199 9-46 (364)
354 cd03223 ABCD_peroxisomal_ALDP 96.2 0.024 5.2E-07 47.1 7.8 26 174-199 26-51 (166)
355 PRK05342 clpX ATP-dependent pr 96.2 0.0066 1.4E-07 58.0 4.9 47 153-199 70-132 (412)
356 KOG0735 AAA+-type ATPase [Post 96.2 0.038 8.2E-07 55.1 9.9 164 155-342 668-864 (952)
357 PRK14530 adenylate kinase; Pro 96.2 0.0042 9E-08 54.1 3.2 24 176-199 4-27 (215)
358 COG0714 MoxR-like ATPases [Gen 96.2 0.013 2.8E-07 54.5 6.7 63 155-225 25-87 (329)
359 PF07726 AAA_3: ATPase family 96.2 0.0058 1.2E-07 48.1 3.6 27 178-207 2-28 (131)
360 cd00071 GMPK Guanosine monopho 96.2 0.0043 9.4E-08 49.9 3.0 23 177-199 1-23 (137)
361 PRK13407 bchI magnesium chelat 96.1 0.0064 1.4E-07 56.4 4.4 46 154-199 8-53 (334)
362 COG0467 RAD55 RecA-superfamily 96.1 0.0067 1.4E-07 54.4 4.5 88 174-267 22-134 (260)
363 cd02024 NRK1 Nicotinamide ribo 96.1 0.0039 8.4E-08 52.9 2.7 23 177-199 1-23 (187)
364 PRK12726 flagellar biosynthesi 96.1 0.043 9.3E-07 51.5 9.6 90 174-268 205-296 (407)
365 PRK05973 replicative DNA helic 96.1 0.045 9.7E-07 48.2 9.3 145 174-330 63-228 (237)
366 KOG1532 GTPase XAB1, interacts 96.1 0.0068 1.5E-07 53.5 4.1 61 174-235 18-87 (366)
367 PRK08972 fliI flagellum-specif 96.1 0.011 2.5E-07 56.3 6.0 90 174-268 161-263 (444)
368 PRK15453 phosphoribulokinase; 96.1 0.037 7.9E-07 49.8 8.8 80 174-256 4-89 (290)
369 PRK08149 ATP synthase SpaL; Va 96.1 0.025 5.4E-07 54.1 8.2 90 174-268 150-252 (428)
370 COG0541 Ffh Signal recognition 96.1 0.99 2.2E-05 42.9 18.5 58 174-234 99-157 (451)
371 TIGR03263 guanyl_kin guanylate 96.1 0.0043 9.2E-08 52.2 2.8 24 176-199 2-25 (180)
372 COG0396 sufC Cysteine desulfur 96.1 0.021 4.5E-07 49.4 6.8 61 248-308 153-216 (251)
373 COG0465 HflB ATP-dependent Zn 96.1 0.061 1.3E-06 53.3 11.0 166 154-343 150-350 (596)
374 PRK12597 F0F1 ATP synthase sub 96.1 0.037 8E-07 53.5 9.3 92 174-267 142-247 (461)
375 PRK00889 adenylylsulfate kinas 96.1 0.0065 1.4E-07 50.9 3.8 26 174-199 3-28 (175)
376 PRK10751 molybdopterin-guanine 96.1 0.0062 1.3E-07 50.8 3.6 26 174-199 5-30 (173)
377 PF08298 AAA_PrkA: PrkA AAA do 96.1 0.011 2.3E-07 54.7 5.3 46 154-199 61-112 (358)
378 cd01135 V_A-ATPase_B V/A-type 96.1 0.037 8E-07 49.6 8.6 95 174-268 68-177 (276)
379 PRK14721 flhF flagellar biosyn 96.0 0.051 1.1E-06 52.0 10.0 25 175-199 191-215 (420)
380 cd00464 SK Shikimate kinase (S 96.0 0.0053 1.1E-07 50.1 3.1 22 178-199 2-23 (154)
381 TIGR01313 therm_gnt_kin carboh 96.0 0.0042 9E-08 51.4 2.5 22 178-199 1-22 (163)
382 cd01130 VirB11-like_ATPase Typ 96.0 0.007 1.5E-07 51.4 3.9 105 163-275 14-118 (186)
383 cd01132 F1_ATPase_alpha F1 ATP 96.0 0.031 6.8E-07 50.1 8.0 91 174-269 68-173 (274)
384 PRK06851 hypothetical protein; 96.0 0.22 4.8E-06 46.8 13.9 54 158-217 201-254 (367)
385 TIGR00073 hypB hydrogenase acc 96.0 0.0077 1.7E-07 52.1 4.1 30 170-199 17-46 (207)
386 COG1124 DppF ABC-type dipeptid 96.0 0.0083 1.8E-07 52.2 4.2 26 174-199 32-57 (252)
387 PRK00300 gmk guanylate kinase; 96.0 0.0053 1.2E-07 52.8 3.1 25 175-199 5-29 (205)
388 TIGR03498 FliI_clade3 flagella 96.0 0.034 7.4E-07 53.1 8.7 91 174-268 139-241 (418)
389 PRK09280 F0F1 ATP synthase sub 96.0 0.049 1.1E-06 52.5 9.6 93 174-268 143-249 (463)
390 PF08477 Miro: Miro-like prote 96.0 0.006 1.3E-07 47.3 2.9 22 178-199 2-23 (119)
391 cd01124 KaiC KaiC is a circadi 96.0 0.0083 1.8E-07 50.6 4.1 44 177-225 1-44 (187)
392 KOG3347 Predicted nucleotide k 96.0 0.012 2.6E-07 47.3 4.5 123 175-322 7-129 (176)
393 PF01078 Mg_chelatase: Magnesi 96.0 0.013 2.9E-07 50.1 5.1 44 154-199 3-46 (206)
394 PRK05922 type III secretion sy 96.0 0.031 6.7E-07 53.5 8.2 90 174-268 156-258 (434)
395 cd01136 ATPase_flagellum-secre 96.0 0.038 8.3E-07 51.0 8.5 90 174-268 68-170 (326)
396 PTZ00185 ATPase alpha subunit; 96.0 0.047 1E-06 53.0 9.3 94 174-268 188-300 (574)
397 COG0703 AroK Shikimate kinase 95.9 0.0073 1.6E-07 50.1 3.4 24 176-199 3-26 (172)
398 PRK14526 adenylate kinase; Pro 95.9 0.0091 2E-07 51.7 4.1 22 178-199 3-24 (211)
399 PRK10078 ribose 1,5-bisphospho 95.9 0.006 1.3E-07 51.8 2.9 24 176-199 3-26 (186)
400 cd01122 GP4d_helicase GP4d_hel 95.9 0.072 1.6E-06 47.9 10.2 50 175-228 30-79 (271)
401 PRK13948 shikimate kinase; Pro 95.9 0.0076 1.7E-07 50.9 3.5 26 174-199 9-34 (182)
402 PLN02200 adenylate kinase fami 95.9 0.0078 1.7E-07 53.1 3.6 26 174-199 42-67 (234)
403 PRK08927 fliI flagellum-specif 95.9 0.037 8E-07 53.1 8.4 90 174-268 157-259 (442)
404 PRK13975 thymidylate kinase; P 95.9 0.0074 1.6E-07 51.5 3.4 24 176-199 3-26 (196)
405 PHA02774 E1; Provisional 95.9 0.018 4E-07 56.5 6.4 50 161-215 419-469 (613)
406 PRK05057 aroK shikimate kinase 95.9 0.0073 1.6E-07 50.6 3.2 25 175-199 4-28 (172)
407 PRK12339 2-phosphoglycerate ki 95.9 0.0082 1.8E-07 51.4 3.6 25 175-199 3-27 (197)
408 PRK14737 gmk guanylate kinase; 95.9 0.008 1.7E-07 51.0 3.4 26 174-199 3-28 (186)
409 PRK03846 adenylylsulfate kinas 95.8 0.0092 2E-07 51.2 3.8 27 173-199 22-48 (198)
410 PRK05986 cob(I)alamin adenolsy 95.8 0.031 6.7E-07 47.3 6.8 120 174-296 21-158 (191)
411 PHA02244 ATPase-like protein 95.8 0.021 4.6E-07 53.2 6.3 44 154-199 96-143 (383)
412 TIGR03305 alt_F1F0_F1_bet alte 95.8 0.023 4.9E-07 54.6 6.7 93 174-268 137-243 (449)
413 PRK06995 flhF flagellar biosyn 95.8 0.047 1E-06 53.0 9.0 25 175-199 256-280 (484)
414 PF03266 NTPase_1: NTPase; In 95.8 0.0075 1.6E-07 50.3 3.1 23 178-200 2-24 (168)
415 cd01672 TMPK Thymidine monopho 95.8 0.022 4.7E-07 48.5 6.0 23 177-199 2-24 (200)
416 PF06068 TIP49: TIP49 C-termin 95.8 0.052 1.1E-06 50.4 8.7 47 153-199 23-74 (398)
417 TIGR01069 mutS2 MutS2 family p 95.8 0.09 2E-06 54.4 11.4 25 174-198 321-345 (771)
418 PRK13946 shikimate kinase; Pro 95.8 0.0088 1.9E-07 50.7 3.5 25 175-199 10-34 (184)
419 TIGR00176 mobB molybdopterin-g 95.8 0.011 2.4E-07 48.5 4.0 35 177-213 1-35 (155)
420 COG3854 SpoIIIAA ncharacterize 95.8 0.032 7E-07 48.3 6.8 123 166-302 128-259 (308)
421 COG1224 TIP49 DNA helicase TIP 95.8 0.023 5.1E-07 52.1 6.2 54 153-207 38-96 (450)
422 PF03215 Rad17: Rad17 cell cyc 95.8 0.013 2.7E-07 57.7 4.9 54 155-213 20-78 (519)
423 TIGR01039 atpD ATP synthase, F 95.8 0.04 8.7E-07 53.0 8.0 93 174-268 142-248 (461)
424 PRK14532 adenylate kinase; Pro 95.8 0.0078 1.7E-07 51.1 3.0 22 178-199 3-24 (188)
425 cd00820 PEPCK_HprK Phosphoenol 95.7 0.0094 2E-07 45.5 3.0 22 175-196 15-36 (107)
426 PRK09099 type III secretion sy 95.7 0.043 9.4E-07 52.7 8.2 91 174-268 162-264 (441)
427 PF03029 ATP_bind_1: Conserved 95.7 0.013 2.8E-07 51.8 4.3 32 180-214 1-32 (238)
428 COG3640 CooC CO dehydrogenase 95.7 0.022 4.7E-07 49.4 5.5 23 177-199 2-24 (255)
429 cd00544 CobU Adenosylcobinamid 95.7 0.071 1.5E-06 44.5 8.5 81 177-267 1-83 (169)
430 PRK07721 fliI flagellum-specif 95.7 0.049 1.1E-06 52.5 8.4 91 173-268 156-259 (438)
431 TIGR00382 clpX endopeptidase C 95.7 0.018 4E-07 54.8 5.5 47 153-199 76-140 (413)
432 cd03287 ABC_MSH3_euk MutS3 hom 95.7 0.01 2.2E-07 51.8 3.5 121 174-302 30-160 (222)
433 cd02029 PRK_like Phosphoribulo 95.7 0.043 9.4E-07 48.9 7.4 79 177-258 1-85 (277)
434 PRK04182 cytidylate kinase; Pr 95.7 0.0095 2.1E-07 49.9 3.2 23 177-199 2-24 (180)
435 PRK05703 flhF flagellar biosyn 95.7 0.045 9.8E-07 52.6 8.2 40 175-215 221-260 (424)
436 PF13604 AAA_30: AAA domain; P 95.7 0.02 4.4E-07 49.0 5.3 37 163-199 6-42 (196)
437 COG1428 Deoxynucleoside kinase 95.7 0.0094 2E-07 50.8 3.1 25 175-199 4-28 (216)
438 TIGR01650 PD_CobS cobaltochela 95.7 0.034 7.4E-07 51.1 6.9 62 154-223 45-106 (327)
439 cd00984 DnaB_C DnaB helicase C 95.7 0.087 1.9E-06 46.5 9.5 49 175-227 13-61 (242)
440 PRK10416 signal recognition pa 95.7 0.09 1.9E-06 48.6 9.8 26 174-199 113-138 (318)
441 PRK05800 cobU adenosylcobinami 95.6 0.048 1E-06 45.6 7.2 82 177-266 3-85 (170)
442 PRK07594 type III secretion sy 95.6 0.039 8.5E-07 52.8 7.5 90 174-268 154-256 (433)
443 PRK14738 gmk guanylate kinase; 95.6 0.011 2.4E-07 51.1 3.5 25 174-198 12-36 (206)
444 COG1116 TauB ABC-type nitrate/ 95.6 0.0093 2E-07 52.2 3.0 26 174-199 28-53 (248)
445 COG1936 Predicted nucleotide k 95.6 0.0088 1.9E-07 49.3 2.7 20 177-196 2-21 (180)
446 PLN02165 adenylate isopentenyl 95.6 0.011 2.4E-07 54.4 3.6 31 169-199 37-67 (334)
447 PF13521 AAA_28: AAA domain; P 95.6 0.0098 2.1E-07 49.2 3.0 21 178-198 2-22 (163)
448 PRK07196 fliI flagellum-specif 95.6 0.052 1.1E-06 52.0 8.2 90 174-268 154-256 (434)
449 TIGR00041 DTMP_kinase thymidyl 95.6 0.031 6.7E-07 47.6 6.2 24 176-199 4-27 (195)
450 cd03282 ABC_MSH4_euk MutS4 hom 95.6 0.054 1.2E-06 46.7 7.6 119 175-303 29-158 (204)
451 TIGR03574 selen_PSTK L-seryl-t 95.6 0.0086 1.9E-07 53.3 2.8 23 177-199 1-23 (249)
452 PRK05537 bifunctional sulfate 95.6 0.019 4.2E-07 57.2 5.5 47 153-199 368-416 (568)
453 PF03193 DUF258: Protein of un 95.6 0.015 3.2E-07 47.9 3.9 36 161-199 24-59 (161)
454 PRK06761 hypothetical protein; 95.6 0.024 5.2E-07 51.2 5.5 24 176-199 4-27 (282)
455 PF06414 Zeta_toxin: Zeta toxi 95.6 0.0087 1.9E-07 51.4 2.6 88 173-269 13-104 (199)
456 smart00487 DEXDc DEAD-like hel 95.6 0.041 8.8E-07 46.1 6.7 64 164-231 14-78 (201)
457 PRK08154 anaerobic benzoate ca 95.5 0.021 4.7E-07 52.5 5.2 26 174-199 132-157 (309)
458 PF07724 AAA_2: AAA domain (Cd 95.5 0.028 6.2E-07 47.0 5.4 42 175-219 3-45 (171)
459 PRK14723 flhF flagellar biosyn 95.5 0.13 2.9E-06 52.6 11.0 25 175-199 185-209 (767)
460 TIGR00455 apsK adenylylsulfate 95.5 0.068 1.5E-06 45.1 7.8 27 173-199 16-42 (184)
461 PRK13657 cyclic beta-1,2-gluca 95.5 0.044 9.4E-07 55.3 7.7 26 174-199 360-385 (588)
462 PRK03731 aroL shikimate kinase 95.5 0.012 2.6E-07 49.1 3.1 24 176-199 3-26 (171)
463 PF00406 ADK: Adenylate kinase 95.5 0.011 2.4E-07 48.2 2.9 20 180-199 1-20 (151)
464 COG3598 RepA RecA-family ATPas 95.5 0.071 1.5E-06 48.4 8.0 60 176-235 90-157 (402)
465 PRK05688 fliI flagellum-specif 95.5 0.054 1.2E-06 52.1 7.8 90 174-268 167-269 (451)
466 TIGR03496 FliI_clade1 flagella 95.5 0.054 1.2E-06 51.7 7.7 90 174-268 136-238 (411)
467 PF00005 ABC_tran: ABC transpo 95.5 0.011 2.5E-07 47.1 2.8 25 175-199 11-35 (137)
468 PHA02530 pseT polynucleotide k 95.5 0.013 2.8E-07 53.6 3.5 24 176-199 3-26 (300)
469 cd03284 ABC_MutS1 MutS1 homolo 95.5 0.056 1.2E-06 47.0 7.3 22 176-197 31-52 (216)
470 PRK09435 membrane ATPase/prote 95.5 0.04 8.7E-07 51.0 6.7 36 164-199 43-80 (332)
471 PRK09302 circadian clock prote 95.5 0.097 2.1E-06 51.8 9.8 88 174-267 272-373 (509)
472 PRK07132 DNA polymerase III su 95.4 0.59 1.3E-05 42.8 14.2 144 163-325 5-161 (299)
473 PRK06793 fliI flagellum-specif 95.4 0.056 1.2E-06 51.8 7.8 92 174-269 155-258 (432)
474 TIGR02173 cyt_kin_arch cytidyl 95.4 0.013 2.9E-07 48.6 3.2 23 177-199 2-24 (171)
475 PRK09825 idnK D-gluconate kina 95.4 0.014 2.9E-07 49.2 3.2 24 176-199 4-27 (176)
476 TIGR02546 III_secr_ATP type II 95.4 0.13 2.9E-06 49.4 10.2 90 174-268 144-246 (422)
477 PRK06820 type III secretion sy 95.4 0.045 9.6E-07 52.6 7.0 90 174-268 162-264 (440)
478 PRK13695 putative NTPase; Prov 95.4 0.021 4.5E-07 47.8 4.2 23 177-199 2-24 (174)
479 PRK05917 DNA polymerase III su 95.4 0.55 1.2E-05 42.6 13.5 38 162-199 5-43 (290)
480 PRK01184 hypothetical protein; 95.4 0.013 2.9E-07 49.4 3.1 23 176-199 2-24 (184)
481 PRK08356 hypothetical protein; 95.4 0.014 3.1E-07 49.9 3.2 22 175-196 5-26 (195)
482 COG1419 FlhF Flagellar GTP-bin 95.4 0.17 3.7E-06 47.6 10.4 38 162-199 186-228 (407)
483 COG2274 SunT ABC-type bacterio 95.3 0.082 1.8E-06 54.1 9.0 26 174-199 498-523 (709)
484 COG1126 GlnQ ABC-type polar am 95.3 0.014 2.9E-07 50.1 2.8 125 174-302 27-202 (240)
485 cd03227 ABC_Class2 ABC-type Cl 95.3 0.04 8.7E-07 45.5 5.7 23 176-198 22-44 (162)
486 PRK02496 adk adenylate kinase; 95.3 0.014 3.1E-07 49.3 3.0 23 177-199 3-25 (184)
487 TIGR03375 type_I_sec_LssB type 95.3 0.062 1.3E-06 55.3 8.2 26 174-199 490-515 (694)
488 COG0194 Gmk Guanylate kinase [ 95.3 0.017 3.7E-07 48.3 3.3 25 175-199 4-28 (191)
489 TIGR02788 VirB11 P-type DNA tr 95.3 0.02 4.3E-07 52.8 4.1 111 174-299 143-256 (308)
490 PLN02459 probable adenylate ki 95.3 0.048 1E-06 48.6 6.3 23 177-199 31-53 (261)
491 TIGR01041 ATP_syn_B_arch ATP s 95.3 0.068 1.5E-06 51.6 7.8 94 174-268 140-249 (458)
492 smart00072 GuKc Guanylate kina 95.3 0.02 4.3E-07 48.5 3.8 25 175-199 2-26 (184)
493 cd04159 Arl10_like Arl10-like 95.3 0.047 1E-06 44.0 6.0 22 178-199 2-23 (159)
494 COG0488 Uup ATPase components 95.2 0.075 1.6E-06 52.4 8.2 26 174-199 28-53 (530)
495 TIGR00960 3a0501s02 Type II (G 95.2 0.021 4.6E-07 49.5 3.9 26 174-199 28-53 (216)
496 PRK13808 adenylate kinase; Pro 95.2 0.026 5.7E-07 52.1 4.6 22 178-199 3-24 (333)
497 cd01878 HflX HflX subfamily. 95.2 0.06 1.3E-06 46.1 6.7 27 173-199 39-65 (204)
498 TIGR01663 PNK-3'Pase polynucle 95.2 0.036 7.7E-07 54.6 5.8 27 173-199 367-393 (526)
499 PF03969 AFG1_ATPase: AFG1-lik 95.2 0.013 2.9E-07 54.9 2.7 79 174-269 61-139 (362)
500 PF01926 MMR_HSR1: 50S ribosom 95.2 0.018 3.8E-07 44.6 3.0 21 178-198 2-22 (116)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-44 Score=361.30 Aligned_cols=326 Identities=39% Similarity=0.678 Sum_probs=279.0
Q ss_pred hhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 047607 12 DGTISQCLDCSVRQAGYICYLRDNLKDLRRESQKLIEERNDVRIRVIVAEQQQMKRLERVQGWFSRVQDVLYEVDRLTLE 91 (352)
Q Consensus 12 ~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~a~~~ed~ld~ 91 (352)
+..++++.+++.+++..+.+.+..+..|+++|..|+.++.|+++. +.. ......|.+.++++.|+++|.++.
T Consensus 6 s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-------~~~-~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 6 SFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-------RDD-LERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred EEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-------cch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999999999999999999885433 221 467889999999999999999999
Q ss_pred hhHHhhhh----------------hhCCCccCcchhhchhHHHHHHHHHHHHHHHhcCCcccccc-cCCCCCCCCCCCCC
Q 047607 92 SNREDAKL----------------CLGGLCTKICKSNYKFGRKVFRTLREVQSLSLEGDFKEVAQ-PAPVNPVDERPLPT 154 (352)
Q Consensus 92 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 154 (352)
|..+.... |..++|++.....+.+++++-+++++++.+..++.|..+.. ..+.......|..+
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQS 157 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCc
Confidence 87543321 33356667777778899999999999999988776766654 22323333344433
Q ss_pred cc-ccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 047607 155 SV-VGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGL 233 (352)
Q Consensus 155 ~~-vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (352)
.. ||.+..++++++.|.+++..+++|+||||+||||||++++|+...+..+|+.++||.+|+.++...++.+|+..++.
T Consensus 158 ~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 158 ESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred cccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 33 99999999999999998889999999999999999999999994489999999999999999999999999999988
Q ss_pred CCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHhh-ccCCceeecCC
Q 047607 234 FNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCGQ-MEAHRSFKVEC 312 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~-~~~~~~~~l~~ 312 (352)
....+......+.+..|.+.|++|||||||||||+..+|+.++.++|.. .+||+|++|||+..||.. +++...+++.+
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~-~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSR-ENGSKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCc-cCCeEEEEEeccHhhhhccccCCccccccc
Confidence 6665556556888999999999999999999999999999999999998 899999999999999999 88888999999
Q ss_pred CCHHHHHHHHHHhhccccccCCCCcHHHHhhhhc
Q 047607 313 LAYEDAWELFEEKVGREILLYIPLETNIHQAEVI 346 (352)
Q Consensus 313 L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~iv~ 346 (352)
|+.+|||+||++.+|.......+.++++|++||=
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~ 350 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAE 350 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHH
Confidence 9999999999999999876666779999999985
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=2.7e-30 Score=235.77 Aligned_cols=186 Identities=32% Similarity=0.547 Sum_probs=149.3
Q ss_pred chHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC
Q 047607 159 LQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE 236 (352)
Q Consensus 159 r~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 236 (352)
||.++++|.+.|.+ ++.++|+|+||||+||||||+.++++. ....+|+.++|+++++..+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 689999999999999999999999996 358999999999999999999999999999987754
Q ss_pred CC-CCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHhhccC-CceeecCCCC
Q 047607 237 SW-SSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCGQMEA-HRSFKVECLA 314 (352)
Q Consensus 237 ~~-~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~~~-~~~~~l~~L~ 314 (352)
.. ...+.......+++.|+++++||||||+|+...|+.+...++.. ..||+||||||+..++..++. ...+++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~-~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSF-SSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCH-HSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 33 56778889999999999999999999999999999988888776 679999999999999877754 6789999999
Q ss_pred HHHHHHHHHHhhccccccCCCCcHHHHhhhhc
Q 047607 315 YEDAWELFEEKVGREILLYIPLETNIHQAEVI 346 (352)
Q Consensus 315 ~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~iv~ 346 (352)
.+++++||++.++......++.+++++++|+-
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~ 190 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVE 190 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 99999999999987653345566777777764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.1e-23 Score=219.66 Aligned_cols=184 Identities=15% Similarity=0.201 Sum_probs=141.2
Q ss_pred CCccccchHHHHHHHHHHh--cCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEe---CCc----------
Q 047607 153 PTSVVGLQSTFERVWSCVM--EDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV---SKD---------- 217 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~---------- 217 (352)
.+.+||++..++++..+|. .++.++++||||||+||||||+.+|++. ..+|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhccccccc
Confidence 3579999999999998875 3478999999999999999999999988 678998888742 111
Q ss_pred -cC-HHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCC
Q 047607 218 -LQ-LEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRD 295 (352)
Q Consensus 218 -~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~ 295 (352)
.+ ...+..+++..+...... .... ...+++.|+++|+||||||||+..+|+.+....... .+||+||||||+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~-~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~-~~GsrIIiTTrd 333 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDI-KIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWF-GSGSRIIVITKD 333 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCc-ccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccC-CCCcEEEEEeCc
Confidence 01 123444555554221110 1111 245778899999999999999999998886544433 689999999999
Q ss_pred hHHHhhccCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhhhhc
Q 047607 296 FEVCGQMEAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQAEVI 346 (352)
Q Consensus 296 ~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~iv~ 346 (352)
..++..++.+++|+++.|+.++||+||+++||... ..++++.+++++||-
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~ 383 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVAL 383 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHH
Confidence 99998777788999999999999999999999765 234568899998875
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=7e-12 Score=119.56 Aligned_cols=174 Identities=16% Similarity=0.126 Sum_probs=118.2
Q ss_pred CCCccccchHHHHHHHHHHhc----CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHH
Q 047607 152 LPTSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECV 227 (352)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 227 (352)
.|+.++||++++++|...|.+ .....+.|+|++|+|||++++.++++.. .....-..+++++....+...++..|
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 357899999999999888743 3456688999999999999999999873 22223457888888777888999999
Q ss_pred HHHcCCCCCCCCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCcc------cccccccCCCCCCCCCcEEEEecCChHHH
Q 047607 228 AEKIGLFNESWSSKNVQEKAQEIFKILS--DKKFMLLLDDIWEPV------DLAQVGLPIPSPRSTSSKVVFTSRDFEVC 299 (352)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~~gs~IiiTTr~~~v~ 299 (352)
+.++..........+..+....+.+.+. ++..+||||+++... .+..+...+......+..+|.++....+.
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 9998652211133456677777777775 456899999998642 12222222221101123356666654432
Q ss_pred hhcc-------CCceeecCCCCHHHHHHHHHHhh
Q 047607 300 GQME-------AHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 300 ~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
.... ....+.+.+++.++..+++..++
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 2221 12467899999999999999876
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.29 E-value=1.4e-10 Score=109.56 Aligned_cols=174 Identities=16% Similarity=0.193 Sum_probs=114.3
Q ss_pred CCccccchHHHHHHHHHHhc----CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCC---CEEEEEEeCCccCHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF---DFVIWVVVSKDLQLEKIQE 225 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~~ 225 (352)
|+.++||++++++|..+|.+ .....+.|+|++|+|||++++.++++........ -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 46799999999999998864 3456899999999999999999998763211111 2567888888778888999
Q ss_pred HHHHHcC---CCCCCCCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCcc-c----ccccccC--CCCCCCCCcEEEEec
Q 047607 226 CVAEKIG---LFNESWSSKNVQEKAQEIFKILS--DKKFMLLLDDIWEPV-D----LAQVGLP--IPSPRSTSSKVVFTS 293 (352)
Q Consensus 226 ~i~~~l~---~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~-~----~~~l~~~--~~~~~~~gs~IiiTT 293 (352)
.|+.++. ...+. ...+..+....+.+.+. +++++||||+++... . +..+... ..........+|.+|
T Consensus 94 ~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 94 ELANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 9999983 22111 22345556666666663 567899999998752 1 1122111 111101233455555
Q ss_pred CChHHHhhcc-------CCceeecCCCCHHHHHHHHHHhhc
Q 047607 294 RDFEVCGQME-------AHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 294 r~~~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
+.......+. ....+.+++++.++..+++..++.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 4433221111 124678999999999999998873
No 6
>PF05729 NACHT: NACHT domain
Probab=99.29 E-value=4.8e-11 Score=99.26 Aligned_cols=142 Identities=16% Similarity=0.278 Sum_probs=91.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCC----CCEEEEEEeCCccCHH---HHHHHHHHHcCCCCCCCCCcCHHHHHH
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNH----FDFVIWVVVSKDLQLE---KIQECVAEKIGLFNESWSSKNVQEKAQ 248 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 248 (352)
+++.|+|.+|+||||+++.++..... ... +...+|.+.+...... .+...|....... ......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHH---
Confidence 57899999999999999999998842 222 4567777766544332 3444444443221 111111
Q ss_pred HHHHH-hCCCcEEEEEeCCCCccc---------ccc-cccCCCCCCCCCcEEEEecCChHH---HhhccCCceeecCCCC
Q 047607 249 EIFKI-LSDKKFMLLLDDIWEPVD---------LAQ-VGLPIPSPRSTSSKVVFTSRDFEV---CGQMEAHRSFKVECLA 314 (352)
Q Consensus 249 ~l~~~-L~~kr~LlVlDdv~~~~~---------~~~-l~~~~~~~~~~gs~IiiTTr~~~v---~~~~~~~~~~~l~~L~ 314 (352)
.+... -+.++++||||++++... +.. +...++....++++++||+|.... .........+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 22222 257899999999986432 111 222233312568999999998665 3444445688999999
Q ss_pred HHHHHHHHHHhh
Q 047607 315 YEDAWELFEEKV 326 (352)
Q Consensus 315 ~~e~~~Lf~~~~ 326 (352)
+++..+++.+.+
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.16 E-value=1.2e-10 Score=102.42 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=87.6
Q ss_pred cccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHH--------
Q 047607 156 VVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECV-------- 227 (352)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i-------- 227 (352)
|+||++++++|.+++..+....+.|+|+.|+|||+|++.+.+... ...+ ..+|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~--~~~~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK--EKGY-KVVYIDFLEESNES-SLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHH-HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh--hcCC-cEEEEecccchhhh-HHHHHHHHHHHHH
Confidence 799999999999999887789999999999999999999999872 2222 34444443333222 12222
Q ss_pred --HHHc----CCCCC----CCCCcCHHHHHHHHHHHh--CCCcEEEEEeCCCCcc-ccc----------ccccCCCCCCC
Q 047607 228 --AEKI----GLFNE----SWSSKNVQEKAQEIFKIL--SDKKFMLLLDDIWEPV-DLA----------QVGLPIPSPRS 284 (352)
Q Consensus 228 --~~~l----~~~~~----~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~-~~~----------~l~~~~~~~~~ 284 (352)
...+ ..... .............+.+.+ .+++++||+||+.... ... .+...... .
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 154 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS--Q 154 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH------
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc--c
Confidence 1112 11000 001122233334444444 2345999999997655 111 11112222 2
Q ss_pred CCcEEEEecCChHHHhh--------ccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 285 TSSKVVFTSRDFEVCGQ--------MEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 285 ~gs~IiiTTr~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
....+|++.....+... .+....+.+++|+.+++++++...+.
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~ 205 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFK 205 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHH
T ss_pred CCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHH
Confidence 34445555555554433 12234589999999999999999753
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=8.7e-09 Score=93.01 Aligned_cols=148 Identities=18% Similarity=0.256 Sum_probs=90.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHH
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFK 252 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (352)
...+++.|+|++|+|||||++.+++... ...+ ...|+ +....+..+++..|+..++.... ..+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~--~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD--QERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC--CCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 4466899999999999999999999872 1211 22333 33345778889999999876532 2222333333333
Q ss_pred ----H-hCCCcEEEEEeCCCCcc--ccccccc--CCCCCCCCCcEEEEecCChHHHhhcc----------CCceeecCCC
Q 047607 253 ----I-LSDKKFMLLLDDIWEPV--DLAQVGL--PIPSPRSTSSKVVFTSRDFEVCGQME----------AHRSFKVECL 313 (352)
Q Consensus 253 ----~-L~~kr~LlVlDdv~~~~--~~~~l~~--~~~~~~~~gs~IiiTTr~~~v~~~~~----------~~~~~~l~~L 313 (352)
. ..+++++||+||++... .++.+.. .+.........|++|.... ....+. ....+++++|
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 26788999999998753 3443321 1111102233455555432 221111 1235789999
Q ss_pred CHHHHHHHHHHhhcc
Q 047607 314 AYEDAWELFEEKVGR 328 (352)
Q Consensus 314 ~~~e~~~Lf~~~~~~ 328 (352)
+.+|..+++...+..
T Consensus 193 ~~~e~~~~l~~~l~~ 207 (269)
T TIGR03015 193 DREETREYIEHRLER 207 (269)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887743
No 9
>PRK06893 DNA replication initiation factor; Validated
Probab=99.06 E-value=7.4e-10 Score=97.52 Aligned_cols=127 Identities=13% Similarity=0.192 Sum_probs=79.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
..+.+.++|++|+|||+|++.+++... .....+.|+++... ..... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~---~~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKS---QYFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHh---hhhhH-----------------------HHHhh
Confidence 346789999999999999999999872 22334566665311 00000 11111
Q ss_pred hCCCcEEEEEeCCCCc---ccccc-cccCCCCCCCCCcEEEE-ecCC---------hHHHhhccCCceeecCCCCHHHHH
Q 047607 254 LSDKKFMLLLDDIWEP---VDLAQ-VGLPIPSPRSTSSKVVF-TSRD---------FEVCGQMEAHRSFKVECLAYEDAW 319 (352)
Q Consensus 254 L~~kr~LlVlDdv~~~---~~~~~-l~~~~~~~~~~gs~Iii-TTr~---------~~v~~~~~~~~~~~l~~L~~~e~~ 319 (352)
+. +.-+|+|||+|.. .+|.. +...+......|+.+|+ |+.. +.+...+.....+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 21 2348999999873 34542 22222221123556654 4543 456666666778999999999999
Q ss_pred HHHHHhhcccc
Q 047607 320 ELFEEKVGREI 330 (352)
Q Consensus 320 ~Lf~~~~~~~~ 330 (352)
++|++.+....
T Consensus 168 ~iL~~~a~~~~ 178 (229)
T PRK06893 168 IVLQRNAYQRG 178 (229)
T ss_pred HHHHHHHHHcC
Confidence 99999887544
No 10
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.3e-08 Score=93.50 Aligned_cols=171 Identities=16% Similarity=0.248 Sum_probs=118.8
Q ss_pred CCccccchHHHHHHHHHHhc----CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
|+.+.+|+++++++...|.+ ..+..+.|+|.+|+|||+.++.++........... +++|+|....+...++..|+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 45689999999999888754 34455999999999999999999999843222333 89999999999999999999
Q ss_pred HHcCCCCCCCCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCccccc--ccccCCCCCCCCCcEE--EEecCChHHHhhc
Q 047607 229 EKIGLFNESWSSKNVQEKAQEIFKILS--DKKFMLLLDDIWEPVDLA--QVGLPIPSPRSTSSKV--VFTSRDFEVCGQM 302 (352)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~--~l~~~~~~~~~~gs~I--iiTTr~~~v~~~~ 302 (352)
++++.... ...+..+....+.+.+. ++.+++|||+++....-. .+...+.......++| |..+.+......+
T Consensus 95 ~~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 95 NKLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 99973221 45566777778888774 578999999998653221 2211111110224443 3344443332222
Q ss_pred c-------CCceeecCCCCHHHHHHHHHHhh
Q 047607 303 E-------AHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 303 ~-------~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
. ....+..+|.+.+|-.+++..++
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHH
Confidence 1 12247899999999999999987
No 11
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.98 E-value=2.4e-09 Score=97.99 Aligned_cols=142 Identities=22% Similarity=0.281 Sum_probs=93.8
Q ss_pred CccccchHHHH---HHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 047607 154 TSVVGLQSTFE---RVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK 230 (352)
Q Consensus 154 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 230 (352)
.++||.+.-+. -|.+++..+...-.-+||+||+||||||+.+.... ...|... |-..+
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~-----sAv~~----------- 84 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEAL-----SAVTS----------- 84 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEe-----ccccc-----------
Confidence 34777776553 35666677788888999999999999999999877 4555421 11111
Q ss_pred cCCCCCCCCCcCHHHHHHHHHH-HhCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEE--ecCChHH---Hhhc
Q 047607 231 IGLFNESWSSKNVQEKAQEIFK-ILSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVF--TSRDFEV---CGQM 302 (352)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Iii--TTr~~~v---~~~~ 302 (352)
...+....++.-++ ...+++.+|.+|+|+.. .+-+.+.+.+ .+|.-|+| ||.|+.. ....
T Consensus 85 --------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v----E~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 85 --------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV----ENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred --------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh----cCCeEEEEeccCCCCCeeecHHHh
Confidence 12223333333333 33578999999999864 3444443332 45677777 7777642 2223
Q ss_pred cCCceeecCCCCHHHHHHHHHHhh
Q 047607 303 EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
+...++.+++|+.++-.+++.+.+
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHH
Confidence 445789999999999999999854
No 12
>PF13173 AAA_14: AAA domain
Probab=98.94 E-value=2.1e-09 Score=85.85 Aligned_cols=120 Identities=16% Similarity=0.186 Sum_probs=82.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
.+++.|.|+.|+|||||+++++.+. . ....++|+++.......... .+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 4689999999999999999999987 2 44567777766543211100 00 223333334
Q ss_pred CCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHhhc------cCCceeecCCCCHHHH
Q 047607 255 SDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCGQM------EAHRSFKVECLAYEDA 318 (352)
Q Consensus 255 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~------~~~~~~~l~~L~~~e~ 318 (352)
..++.+|+||++....+|......+.+. ....+|++|+.+......- +....+++.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~-~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDN-GPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHh-ccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4478899999999988888776666665 4678999999986654321 1223679999998774
No 13
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.92 E-value=1.9e-08 Score=100.70 Aligned_cols=190 Identities=11% Similarity=0.081 Sum_probs=118.1
Q ss_pred CCccccchHHHHHHHHHHhc----CC-cEEEEEEecCCCcHHHHHHHHHHhhccC--CCCCC--EEEEEEeCCccCHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME----DT-IGIVGLYGMGGVGKTTLLTQINNKFLVS--PNHFD--FVIWVVVSKDLQLEKI 223 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~~s~~~~~~~~ 223 (352)
|+.++||++++++|...|.+ .. ..++-|+|++|+|||++++.+....... ....+ .+++|++........+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 56689999999999888754 23 3567899999999999999999876321 11222 4688898887788889
Q ss_pred HHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhC---CCcEEEEEeCCCCccc--ccccccCC--CCCCCCCcEEEE--ecC
Q 047607 224 QECVAEKIGLFNESWSSKNVQEKAQEIFKILS---DKKFMLLLDDIWEPVD--LAQVGLPI--PSPRSTSSKVVF--TSR 294 (352)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~~~--~~~l~~~~--~~~~~~gs~Iii--TTr 294 (352)
...|..++....+. ...........+...+. +...+||||+++.... -+.|...| +. ..+++|++ +|.
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGISN 910 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEecC
Confidence 99999888543211 23334455556665552 2235899999986421 01111111 11 23455444 333
Q ss_pred ChH--------HHhhccCCceeecCCCCHHHHHHHHHHhhccc-cccCCCCcHHHHhhhhc
Q 047607 295 DFE--------VCGQMEAHRSFKVECLAYEDAWELFEEKVGRE-ILLYIPLETNIHQAEVI 346 (352)
Q Consensus 295 ~~~--------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~l~~i~~~iv~ 346 (352)
..+ +...+. ...+...|++.++-.+++..++... ..-.+..++-+++.++-
T Consensus 911 dlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred chhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 222 222221 2246779999999999999998642 22233446666665553
No 14
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.87 E-value=1.3e-08 Score=97.47 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=88.8
Q ss_pred CccccchHHHHH---HHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 047607 154 TSVVGLQSTFER---VWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK 230 (352)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 230 (352)
.+++|++..+.. |..++..+....+.++|++|+||||||+.+.+.. ...|. .++.+.. ...
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~---~l~a~~~-~~~--------- 75 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPFE---ALSAVTS-GVK--------- 75 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEecccc-cHH---------
Confidence 468999988766 8888877777788999999999999999999877 33332 1221111 111
Q ss_pred cCCCCCCCCCcCHHHHHHHHHHH-hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEE--ecCChHH---Hhhc
Q 047607 231 IGLFNESWSSKNVQEKAQEIFKI-LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVF--TSRDFEV---CGQM 302 (352)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Iii--TTr~~~v---~~~~ 302 (352)
+........... ..+++.+|++|+++.. .+.+.+...+. .+..+++ ||.+... ....
T Consensus 76 -----------~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 76 -----------DLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred -----------HHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHh
Confidence 111222222221 2457889999999875 23334433333 2444444 3444321 1122
Q ss_pred cCCceeecCCCCHHHHHHHHHHhhc
Q 047607 303 EAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
+....+.+.+++.++...+|.+.+.
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHH
Confidence 2336789999999999999998653
No 15
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.86 E-value=1.9e-08 Score=81.28 Aligned_cols=124 Identities=19% Similarity=0.108 Sum_probs=74.5
Q ss_pred ccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC
Q 047607 157 VGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE 236 (352)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 236 (352)
+|++..+..+...+.....+.+.|+|++|+|||+|++.+++... ..-..++++.++...........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47888899999888776678899999999999999999999882 223456677665433222211111000
Q ss_pred CCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc-----ccccccccCCCCC--CCCCcEEEEecCChH
Q 047607 237 SWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP-----VDLAQVGLPIPSP--RSTSSKVVFTSRDFE 297 (352)
Q Consensus 237 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~--~~~gs~IiiTTr~~~ 297 (352)
............+..+|++||++.. ..+..+...+... ...+..+|+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999853 1222221222110 025788888887653
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=3.6e-08 Score=103.96 Aligned_cols=169 Identities=14% Similarity=0.208 Sum_probs=104.3
Q ss_pred CCCCCCccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC-ccCHHHHHHHH
Q 047607 149 ERPLPTSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK-DLQLEKIQECV 227 (352)
Q Consensus 149 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i 227 (352)
+++.++.++-|+.-.+.+-.. ...+++.|.|++|.||||++.++..+. . .++|+++.. ..++..+...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHH
Confidence 334456778887655554321 357899999999999999999988543 1 589999864 45667777777
Q ss_pred HHHcCCCCCC-----------CCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCccc--ccccccC-CCCCCCCCcEEEE
Q 047607 228 AEKIGLFNES-----------WSSKNVQEKAQEIFKILS--DKKFMLLLDDIWEPVD--LAQVGLP-IPSPRSTSSKVVF 291 (352)
Q Consensus 228 ~~~l~~~~~~-----------~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~--~~~l~~~-~~~~~~~gs~Iii 291 (352)
+..++..... ....+.......+...+. +.+++|||||++...+ ...+... +... ..+.++||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~-~~~~~lv~ 157 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ-PENLTLVV 157 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC-CCCeEEEE
Confidence 7777421110 011223334444444443 6789999999976421 1222212 2222 45678889
Q ss_pred ecCChH---HHhhccCCceeecC----CCCHHHHHHHHHHhhcc
Q 047607 292 TSRDFE---VCGQMEAHRSFKVE----CLAYEDAWELFEEKVGR 328 (352)
Q Consensus 292 TTr~~~---v~~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~ 328 (352)
|||... .....-......+. +|+.+|+.+||....+.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~ 201 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS 201 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC
Confidence 999742 11111122344555 99999999999876553
No 17
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.84 E-value=2e-08 Score=92.45 Aligned_cols=161 Identities=13% Similarity=0.129 Sum_probs=95.1
Q ss_pred CccccchHHHHHHHHHHhc-----CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVME-----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
.+|+|+++.+++|..++.. .....+.++|++|+|||+||+.+.+.. ...+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchh-HHHHH
Confidence 4689999999999888862 345668899999999999999999987 2222 1222211111222 22333
Q ss_pred HHcCCCC----CCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHhhc--
Q 047607 229 EKIGLFN----ESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCGQM-- 302 (352)
Q Consensus 229 ~~l~~~~----~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~-- 302 (352)
..++... +.....+ ......+...+.+.+..+|+++..+...+.. .+ .+.+-|..||+...+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~----~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL----PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cC----CCeEEEEecCCccccCHHHHh
Confidence 3332211 0000001 1223445666666677777777655544432 11 1345566677765443221
Q ss_pred cCCceeecCCCCHHHHHHHHHHhhccc
Q 047607 303 EAHRSFKVECLAYEDAWELFEEKVGRE 329 (352)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (352)
.....+.+++++.++..+++.+.+...
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~ 175 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLL 175 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHh
Confidence 113467899999999999999887643
No 18
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.84 E-value=2.4e-08 Score=90.19 Aligned_cols=146 Identities=20% Similarity=0.229 Sum_probs=97.4
Q ss_pred ccccchHHHHH---HHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHc
Q 047607 155 SVVGLQSTFER---VWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKI 231 (352)
Q Consensus 155 ~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 231 (352)
++||.++.+.+ |.+++.++.++-+.+||++|+||||||+.+.+.. +.+- ..+|..|-...-..-.+.|+++-
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHH
Confidence 46776655533 5566677889999999999999999999999877 2222 56676665443333333444332
Q ss_pred CCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEE--ecCChHH---HhhccC
Q 047607 232 GLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVF--TSRDFEV---CGQMEA 304 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Iii--TTr~~~v---~~~~~~ 304 (352)
.. ...+.++|.+|.+|+|+.- .+-+.+ +|.- .+|.-++| ||.+++. +..+..
T Consensus 214 q~-----------------~~~l~krkTilFiDEiHRFNksQQD~f---LP~V-E~G~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 214 QN-----------------EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHV-ENGDITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred HH-----------------HHhhhcceeEEEeHHhhhhhhhhhhcc---ccee-ccCceEEEecccCCCccchhHHHHhc
Confidence 10 1124568889999999753 333333 3333 56777776 7777653 334455
Q ss_pred CceeecCCCCHHHHHHHHHHhh
Q 047607 305 HRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
..++.|++|..++-..++.+..
T Consensus 273 C~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred cceeEeccCCHHHHHHHHHHHH
Confidence 6789999999999999998844
No 19
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.82 E-value=8.5e-09 Score=82.37 Aligned_cols=117 Identities=20% Similarity=0.253 Sum_probs=78.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccC--CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVS--PNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIF 251 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (352)
+.+.+.|+|++|+|||++++.+.+..... ...-..++|++++...+...+...|+..++..... ..+...+...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 35789999999999999999999987210 01145677999998889999999999999876532 356677778888
Q ss_pred HHhCCCc-EEEEEeCCCCc-c--cccccccCCCCCCCCCcEEEEecCC
Q 047607 252 KILSDKK-FMLLLDDIWEP-V--DLAQVGLPIPSPRSTSSKVVFTSRD 295 (352)
Q Consensus 252 ~~L~~kr-~LlVlDdv~~~-~--~~~~l~~~~~~~~~~gs~IiiTTr~ 295 (352)
+.+...+ .+||+||++.. . .++.+.. +.+ ..+.++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC--SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh--CCCCeEEEEECh
Confidence 8776544 59999999764 2 2223322 222 356677776554
No 20
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.79 E-value=2.4e-08 Score=87.72 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=85.4
Q ss_pred chHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC
Q 047607 159 LQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW 238 (352)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 238 (352)
.+..++.+.+++.......+.|+|++|+|||+||+.+++... ......++++++.-... .
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~~------~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQA------D----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHHh------H-----------
Confidence 455677777776666678999999999999999999999872 23334566665432110 0
Q ss_pred CCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc---ccc-ccccCCCCCCCCCcEEEEecCChH---------HHhhccCC
Q 047607 239 SSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV---DLA-QVGLPIPSPRSTSSKVVFTSRDFE---------VCGQMEAH 305 (352)
Q Consensus 239 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~-~l~~~~~~~~~~gs~IiiTTr~~~---------v~~~~~~~ 305 (352)
..+...+.+ .-+|||||++... .|. .+...+......+.++|+||+... +...+...
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011111222 2389999998643 232 232222211023457888887432 22233334
Q ss_pred ceeecCCCCHHHHHHHHHHhh
Q 047607 306 RSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
..+.+.+++.++...++...+
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHH
Confidence 678999999999999998765
No 21
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=8.5e-08 Score=95.49 Aligned_cols=166 Identities=15% Similarity=0.169 Sum_probs=97.7
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH--
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK-- 230 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-- 230 (352)
.+++|.+..++.|.+++..++ ...+.++|+.|+||||+|+.+.+.... ...++ +..+........|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC-e~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC-ETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-ccCCC-------CCCCcccHHHHHHhcCCC
Confidence 468999999999999998776 456689999999999999999987731 11111 0111111222222111
Q ss_pred ---cCCCCCCCCCcCHHHHHHHHHHH----hCCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEecCCh-HHHh
Q 047607 231 ---IGLFNESWSSKNVQEKAQEIFKI----LSDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRDF-EVCG 300 (352)
Q Consensus 231 ---l~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~~-~v~~ 300 (352)
+.... ......+++...+... ..++.-++|||+++... .++.+...+..- ..+.++|++|.+. .+..
T Consensus 88 ~DviEIDA--as~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-P~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 88 VDYVEMDA--ASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-PPHVKFILATTDPQKIPV 164 (830)
T ss_pred ceEEEecc--cccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-CCCeEEEEEECChhhccc
Confidence 00000 0112222222222221 12455688999998763 355554444333 4567777766653 3322
Q ss_pred h-ccCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 301 Q-MEAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 301 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
. .+....+.+++++.++..+.+.+.+..++
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg 195 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEER 195 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcC
Confidence 2 23345789999999999999988775443
No 22
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.77 E-value=2.5e-06 Score=85.49 Aligned_cols=172 Identities=17% Similarity=0.127 Sum_probs=104.9
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCC---CEEEEEEeC--C-ccCHHHHHHH-
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF---DFVIWVVVS--K-DLQLEKIQEC- 226 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s--~-~~~~~~~~~~- 226 (352)
++++|++..+..+.+.+.......+.|+|++|+||||||+.+++.. .....+ ...-|+.+. . ..+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4689999999998888876667789999999999999999998876 222222 122344332 2 1122222111
Q ss_pred --------------HHHHcCCCCC----------------CCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--ccccc
Q 047607 227 --------------VAEKIGLFNE----------------SWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP--VDLAQ 274 (352)
Q Consensus 227 --------------i~~~l~~~~~----------------~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~ 274 (352)
.+...+.... .....+ ...+..|.+.+++++++++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 1111121100 001111 23467788888889999997777654 45777
Q ss_pred cccCCCCCCCCCcEEEE--ecCChH-HHhhc-cCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 275 VGLPIPSPRSTSSKVVF--TSRDFE-VCGQM-EAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 275 l~~~~~~~~~~gs~Iii--TTr~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+...+... .+...+++ ||++.. +...+ .....+.+.+++.++.+.++.+.+..
T Consensus 312 ik~~~~~~-~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 312 IKKLFEEG-APADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred hhhhcccC-ccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 76666665 44445555 566432 11111 12246789999999999999997643
No 23
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.76 E-value=2.6e-08 Score=84.45 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=33.1
Q ss_pred cccchHHHHHHHHHHh---cCCcEEEEEEecCCCcHHHHHHHHHHhhc
Q 047607 156 VVGLQSTFERVWSCVM---EDTIGIVGLYGMGGVGKTTLLTQINNKFL 200 (352)
Q Consensus 156 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (352)
|+||+++++++...|. ....+.+.|+|++|+|||+|.+.++....
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7999999999999993 23678999999999999999999999883
No 24
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.76 E-value=7.5e-08 Score=89.83 Aligned_cols=169 Identities=12% Similarity=0.134 Sum_probs=94.4
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC-EEEEEEeCCccCHHHHHHHHHH---
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD-FVIWVVVSKDLQLEKIQECVAE--- 229 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~--- 229 (352)
.+++|++..++.|.+++..+..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++.... .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 56899999999999999877766788999999999999999998872 12222 234555433110 00000000
Q ss_pred ---HcCCCCCCCCCcCHHHHHHHHH----HHh--CCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEecCCh-H
Q 047607 230 ---KIGLFNESWSSKNVQEKAQEIF----KIL--SDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRDF-E 297 (352)
Q Consensus 230 ---~l~~~~~~~~~~~~~~~~~~l~----~~L--~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~~-~ 297 (352)
.++.. +. ...........+. ... ...+-+||+||++... ....+...+... ...+++|+||.+. .
T Consensus 91 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~-~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 91 FAHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY-SRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc-cCCCeEEEEeCChhh
Confidence 00000 00 0011111222211 111 2345589999997642 222333323222 3456777777543 2
Q ss_pred HHhhc-cCCceeecCCCCHHHHHHHHHHhhccc
Q 047607 298 VCGQM-EAHRSFKVECLAYEDAWELFEEKVGRE 329 (352)
Q Consensus 298 v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (352)
+...+ +....+.+.+++.++...++.+.+...
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~ 200 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAE 200 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHc
Confidence 22222 233467899999999999988876443
No 25
>PRK08727 hypothetical protein; Validated
Probab=98.74 E-value=1.1e-07 Score=84.04 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=84.7
Q ss_pred cccc-chHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 047607 155 SVVG-LQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGL 233 (352)
Q Consensus 155 ~~vG-r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (352)
+|++ -...+..+.....+.....+.|+|++|+|||+|++.+++... .....++|+++.. ....+.
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~----- 85 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR----- 85 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH-----
Confidence 3444 444444444444334446799999999999999999999873 2223455665322 111110
Q ss_pred CCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc---cccc-cccCCCCCCCCCcEEEEecCC---------hHHHh
Q 047607 234 FNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV---DLAQ-VGLPIPSPRSTSSKVVFTSRD---------FEVCG 300 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~-l~~~~~~~~~~gs~IiiTTr~---------~~v~~ 300 (352)
.. + +.+ .+.-+||+||+.... .|.. +...+.....+|..+|+|++. +++..
T Consensus 86 -----------~~---~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 86 -----------DA---L-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred -----------HH---H-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 01 1 111 123489999997542 2322 221111111246679999984 22333
Q ss_pred hccCCceeecCCCCHHHHHHHHHHhhccc
Q 047607 301 QMEAHRSFKVECLAYEDAWELFEEKVGRE 329 (352)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (352)
.+.....+++++++.++-.+++.+.+...
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 43345688999999999999999977543
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.70 E-value=2.4e-07 Score=86.10 Aligned_cols=162 Identities=12% Similarity=0.089 Sum_probs=91.5
Q ss_pred CccccchHHHHHHHHHHhc-----CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVME-----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
.+|+|+++.++.+..++.. .....+.++|++|+|||+||+.+.+.. ...+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEeccc-ccChHHHHHHH
Confidence 5699999999998777752 245678899999999999999999987 2222 1222211 11122233333
Q ss_pred HHcCCCCC----CCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHhhcc-
Q 047607 229 EKIGLFNE----SWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCGQME- 303 (352)
Q Consensus 229 ~~l~~~~~----~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~~- 303 (352)
..+....- .....+ ....+.+...+.+.+..+++|+..+...+.. .+ .+.+-|..||+...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l----~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DL----PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cC----CCceEEeecCCcccCCHHHHH
Confidence 33322110 000000 1122334455555566666666544332211 11 12355666776544332221
Q ss_pred -CCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 304 -AHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 304 -~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
....+.+++++.++..+++.+.+....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~ 197 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILG 197 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 234689999999999999998876544
No 27
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=1.7e-07 Score=95.12 Aligned_cols=166 Identities=10% Similarity=0.096 Sum_probs=93.9
Q ss_pred CccccchHHHHHHHHHHhcCCcE-EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+..++.|.+++..++.. .+.++|++|+||||+|+.+.+.... ...... ..+........|.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~-------~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTA-------TPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCC-------CCCCCchHHHHHhcCCC
Confidence 46899999999999999887655 4689999999999999999998731 111100 00000011111111100
Q ss_pred -----CCCC-CCCCcCHHHHHHHHHH-HhCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEec-CChHHHhh-
Q 047607 233 -----LFNE-SWSSKNVQEKAQEIFK-ILSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTS-RDFEVCGQ- 301 (352)
Q Consensus 233 -----~~~~-~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTT-r~~~v~~~- 301 (352)
.... .....+..++...+.. -..+++-++|||+++.. ..++.|+..+-.- ....++|++| ....+...
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-P~~vrFILaTTe~~kLl~TI 166 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-PEHVKFLLATTDPQKLPVTV 166 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc-CCCeEEEEECCCchhchHHH
Confidence 0000 0011112222222221 12456779999999865 3445544444332 3445555544 44444322
Q ss_pred ccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 302 MEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
......|++++|+.++..+++.+.+-.
T Consensus 167 lSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 167 LSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred HHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 233468899999999999999886643
No 28
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=2.3e-07 Score=91.43 Aligned_cols=168 Identities=15% Similarity=0.136 Sum_probs=95.8
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+...+.|.+++..++ ...+.++|++|+||||+|+.+.+.... ..... ...+......+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC-~~~~~-------~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC-ETGVT-------STPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-CcCCC-------CCCCccCHHHHHHhcCCC
Confidence 468999999999999998776 467899999999999999999888721 11110 011111111111211100
Q ss_pred CCC---CCCCCcCHHHHHHHHHH----HhCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCC-hHHH-hh
Q 047607 233 LFN---ESWSSKNVQEKAQEIFK----ILSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRD-FEVC-GQ 301 (352)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~-~~v~-~~ 301 (352)
..- +.......++....+.. -..++.-++|+|+++.. ..+..+...+..- ..+.++|++|.+ ..+. ..
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-P~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP-PEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-CCCcEEEEEECChHhhhHHH
Confidence 000 00011122222221111 12356679999999865 3344444444333 345666666654 3332 22
Q ss_pred ccCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 302 MEAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
.+....+++.+++.++..+.+.+.+...+
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEg 194 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQ 194 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcC
Confidence 23446889999999999998888775443
No 29
>PTZ00202 tuzin; Provisional
Probab=98.68 E-value=5.2e-07 Score=84.47 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=102.3
Q ss_pred CCCCccccchHHHHHHHHHHhcC---CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHH
Q 047607 151 PLPTSVVGLQSTFERVWSCVMED---TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECV 227 (352)
Q Consensus 151 ~~~~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 227 (352)
+..+.|+||+.++.+|...|.+. ..+++.|.|++|+|||||++.+.... . + ...+++.. +..+++..|
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~--~-~qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G--M-PAVFVDVR---GTEDTLRSV 329 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C--c-eEEEECCC---CHHHHHHHH
Confidence 34578999999999999988642 35699999999999999999999766 2 2 23333333 679999999
Q ss_pred HHHcCCCCCCCCCcCHHHHHHHHHHHh-----C-CCcEEEEEeCCCCccccccc---ccCCCCCCCCCcEEEEecCChHH
Q 047607 228 AEKIGLFNESWSSKNVQEKAQEIFKIL-----S-DKKFMLLLDDIWEPVDLAQV---GLPIPSPRSTSSKVVFTSRDFEV 298 (352)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVlDdv~~~~~~~~l---~~~~~~~~~~gs~IiiTTr~~~v 298 (352)
+.+||... .....++...|.+.+ . +++.+||+- +.+..++... ...+... ..-|.|++---.+++
T Consensus 330 L~ALGV~p----~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~d-rr~ch~v~evplesl 403 (550)
T PTZ00202 330 VKALGVPN----VEACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACD-RRLCHVVIEVPLESL 403 (550)
T ss_pred HHHcCCCC----cccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHcc-chhheeeeeehHhhc
Confidence 99999743 222234444444433 2 556666643 2222222111 0112222 466788876665544
Q ss_pred Hhhc---cCCceeecCCCCHHHHHHHHHHhh
Q 047607 299 CGQM---EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 299 ~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
.... ..-.-|.+++++.+++..+-.+..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 3221 112467899999999998877654
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.67 E-value=2.4e-07 Score=87.39 Aligned_cols=165 Identities=19% Similarity=0.194 Sum_probs=95.4
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
.++.|+++.+++|.+.+.. ...+-+.++|++|+|||+||+.+++.. ...|- .+. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~~-----~v~----~ 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFI-----RVV----G 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCEE-----ecc----h
Confidence 4589999999999887642 124568999999999999999999987 33332 221 1
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCcc----------------cccccccCCC--C
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEPV----------------DLAQVGLPIP--S 281 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~ 281 (352)
..+ ..... .. .......+.+.. ...+.+|+|||++... .+..+...+. .
T Consensus 190 ~~l----~~~~~-------g~-~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SEL----VRKYI-------GE-GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHH----HHHhh-------hH-HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 111 11110 00 111222222222 3467899999997531 0111211111 1
Q ss_pred CCCCCcEEEEecCChHH-----HhhccCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 282 PRSTSSKVVFTSRDFEV-----CGQMEAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 282 ~~~~gs~IiiTTr~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
. ..+.+||.||..... ......+..+.+...+.++..++|..++.......+-++..+++.
T Consensus 258 ~-~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~ 323 (364)
T TIGR01242 258 P-RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKM 323 (364)
T ss_pred C-CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHH
Confidence 1 246778888875432 111123457899999999999999988755432222345555543
No 31
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=4.4e-07 Score=85.49 Aligned_cols=165 Identities=16% Similarity=0.214 Sum_probs=93.5
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+..++.+.+.+..++. ..+.++|++|+||||+|+.+.+... ....+. ..++.......++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 5689999999999999887654 5679999999999999999998872 111110 000111111111111110
Q ss_pred CCC---CCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEecCC-hHHHhh
Q 047607 233 LFN---ESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRD-FEVCGQ 301 (352)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~-~~v~~~ 301 (352)
..- +.......++ ...+.+.+ .+++-++|+|+++... .++.+...+... ...+++|++|.+ ..+...
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~-~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP-PQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-CCCeEEEEEcCChHhhhHH
Confidence 000 0000111222 12222221 2355699999998753 355554444443 445666666654 333322
Q ss_pred c-cCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 302 M-EAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 302 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+ +....+++.+++.++..+.+.+.+..
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHH
Confidence 2 23457899999999999888876543
No 32
>PLN03025 replication factor C subunit; Provisional
Probab=98.65 E-value=3e-07 Score=85.16 Aligned_cols=157 Identities=13% Similarity=0.168 Sum_probs=91.6
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC-EEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD-FVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.++.++.|..++..++.+.+.++|++|+||||+|+.+.+... ...|. .++-++.+...... ..+.++..+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 45899999999998888877767788999999999999999999872 22222 12222222222221 1111111110
Q ss_pred CCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEecCCh-HHHhhc-cCCce
Q 047607 233 LFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRDF-EVCGQM-EAHRS 307 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~~-~v~~~~-~~~~~ 307 (352)
.... .+ .++.-+++||+++... ....+...+..- ...+++++++... .+...+ +....
T Consensus 90 ~~~~----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 90 QKKV----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-SNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred hccc----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-cCCceEEEEeCCccccchhHHHhhhc
Confidence 0000 01 2356699999998752 222232222221 3456677766542 221111 22357
Q ss_pred eecCCCCHHHHHHHHHHhhcccc
Q 047607 308 FKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 308 ~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
+++++++.++....+...+...+
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~eg 175 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEK 175 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcC
Confidence 89999999999999988775443
No 33
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.65 E-value=4e-07 Score=84.21 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=91.0
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC-EEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD-FVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|+++.++.+..++.....+.+.++|++|+||||+++.+.+... ...+. ..+-++.+.......+. ..+..+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~~~i~~~~~~~~~~~~~~-~~i~~~~ 93 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRENFLELNASDERGIDVIR-NKIKEFA 93 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccccceEEeccccccchHHHH-HHHHHHH
Confidence 35899999999999999877667789999999999999999999872 12222 11222222222211111 1111110
Q ss_pred CCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEecCCh-HHHhhc-cCCcee
Q 047607 233 LFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRDF-EVCGQM-EAHRSF 308 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~~-~v~~~~-~~~~~~ 308 (352)
...+ .....+-++++|+++... ....+...+... ...+++|+++... .+.... .....+
T Consensus 94 ~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 94 RTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-SQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred hcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-CCCCeEEEEeCCccccchhHHHHhhee
Confidence 0000 001245689999987642 233343333333 3446677766432 221111 223468
Q ss_pred ecCCCCHHHHHHHHHHhhcccc
Q 047607 309 KVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 309 ~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
++.+++.++....+.+.+...+
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~ 178 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEG 178 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcC
Confidence 9999999999888888775433
No 34
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=3.8e-07 Score=88.99 Aligned_cols=166 Identities=14% Similarity=0.092 Sum_probs=96.0
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+...+.|..++..+.. ..+.++|++|+||||+|+.+.+... ....+...+|.|.+. ..+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc--------~~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESC--------LAVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhh--------HHHhcCCC
Confidence 4589999999999999887764 4669999999999999999998873 112222223332111 01110000
Q ss_pred CCC---CCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecC-ChHHHhh
Q 047607 233 LFN---ESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSR-DFEVCGQ 301 (352)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr-~~~v~~~ 301 (352)
... +......... +..+.+.+ .+++-++|+|+++.. ..+..+...+... ...+.+|++|. ...+...
T Consensus 85 ~dv~el~~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep-~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 85 PDVLEIDAASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP-PEHVIFILATTEPEKMPPT 162 (504)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC-CCCEEEEEEcCChhhCChH
Confidence 000 0001111221 12222222 346679999999864 3455555554443 34455555554 4444322
Q ss_pred c-cCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 302 M-EAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 302 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
+ +....+++.+++.++....+.+.+...+
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~eg 192 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEG 192 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 2 2345789999999999999998775443
No 35
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.64 E-value=1.5e-07 Score=95.31 Aligned_cols=143 Identities=22% Similarity=0.307 Sum_probs=87.0
Q ss_pred CccccchHHHH---HHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 047607 154 TSVVGLQSTFE---RVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK 230 (352)
Q Consensus 154 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 230 (352)
++|+|++..+. .+.+.+..+....+.++|++|+||||||+.+++.. ..+|. .++.+. ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i---------- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGV---------- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhh----------
Confidence 35899988774 46667777777788999999999999999999877 34442 111110 000
Q ss_pred cCCCCCCCCCcCHHHHHHHHHHHh--CCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEE--ecCChH--HHh-h
Q 047607 231 IGLFNESWSSKNVQEKAQEIFKIL--SDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVF--TSRDFE--VCG-Q 301 (352)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Iii--TTr~~~--v~~-~ 301 (352)
.+...........+ .+++.+|+|||++.. ..++.+...+ ..|+.++| ||.+.. +.. .
T Consensus 91 ----------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l----E~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 91 ----------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV----ENGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred ----------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh----cCceEEEEEecCCChHhhhhhHh
Confidence 01111222222222 246779999999764 3344443332 23455555 344432 211 1
Q ss_pred ccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 302 MEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
.+....+.+++|+.++...++.+.+-
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHH
Confidence 22345789999999999999988664
No 36
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.64 E-value=6.2e-08 Score=85.88 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=63.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc--cCHHHHHHHHHHHcCCCCCC-CCCc---CHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD--LQLEKIQECVAEKIGLFNES-WSSK---NVQEKA 247 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~-~~~~---~~~~~~ 247 (352)
.-..++|+|++|+|||||++.+++... ..+|+.++|+.+... .++.+++..+...+-..... +... -.....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 446899999999999999999999883 348999999997776 78999999984333211110 0100 011122
Q ss_pred HHHHHH-hCCCcEEEEEeCCCC
Q 047607 248 QEIFKI-LSDKKFMLLLDDIWE 268 (352)
Q Consensus 248 ~~l~~~-L~~kr~LlVlDdv~~ 268 (352)
.....+ -.+++.++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 222222 257899999999965
No 37
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.64 E-value=2.9e-07 Score=81.38 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=85.0
Q ss_pred cccchH-HHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 047607 156 VVGLQS-TFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLF 234 (352)
Q Consensus 156 ~vGr~~-~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 234 (352)
++|.+. .+..+.++........+.|+|++|+|||+|++.+++... ..-..+.|+++.....
T Consensus 25 ~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~--------------- 86 (235)
T PRK08084 25 YPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW--------------- 86 (235)
T ss_pred ccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh---------------
Confidence 446333 334444444444557899999999999999999999872 2223455665532100
Q ss_pred CCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc---cccccc-ccCCCCCCCCC-cEEEEecCCh---------HHHh
Q 047607 235 NESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP---VDLAQV-GLPIPSPRSTS-SKVVFTSRDF---------EVCG 300 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l-~~~~~~~~~~g-s~IiiTTr~~---------~v~~ 300 (352)
...+..+.+ . +--+|++||+... ..|... ...+......| .++|+||+.. ++..
T Consensus 87 -------~~~~~~~~~----~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 87 -------FVPEVLEGM----E-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred -------hhHHHHHHh----h-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH
Confidence 001111111 1 1238899999753 334321 11111100123 4789998753 3455
Q ss_pred hccCCceeecCCCCHHHHHHHHHHhhccc
Q 047607 301 QMEAHRSFKVECLAYEDAWELFEEKVGRE 329 (352)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (352)
++....+++++++++++-.+++.+++...
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~ 183 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARLR 183 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence 55566789999999999999998876443
No 38
>PRK04195 replication factor C large subunit; Provisional
Probab=98.62 E-value=2.7e-07 Score=90.26 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=92.5
Q ss_pred CccccchHHHHHHHHHHhcC----CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMED----TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 229 (352)
.+++|+++.++.|.+|+..- ..+.+.|+|++|+||||+|+.+++.. . |+ .+-++.+...+... ...++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el---~--~~-~ielnasd~r~~~~-i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY---G--WE-VIELNASDQRTADV-IERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc---C--CC-EEEEcccccccHHH-HHHHHH
Confidence 46899999999999988642 26889999999999999999999987 1 22 33344444332222 222222
Q ss_pred HcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc------ccccccCCCCCCCCCcEEEEecCCh-HHH--h
Q 047607 230 KIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD------LAQVGLPIPSPRSTSSKVVFTSRDF-EVC--G 300 (352)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~gs~IiiTTr~~-~v~--~ 300 (352)
...... .....++-+||||+++.... +..+...+.. .++.+|+|+.+. ... .
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK---AKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc---CCCCEEEeccCccccchhh
Confidence 221100 01113678999999986422 3333333322 334566666432 221 1
Q ss_pred hccCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 301 QMEAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
.-.....+.+.+++.++....+.+.+...+
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~eg 177 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEG 177 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 112345789999999999998888775444
No 39
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=3.3e-07 Score=90.17 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=96.4
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCC-CCEEEEEEeCCccCHHHHHHHHHHH-
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNH-FDFVIWVVVSKDLQLEKIQECVAEK- 230 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~- 230 (352)
.++||.+..++.|.+++..++. +.+.++|+.|+||||+|+.+.+........ -.... +..+........|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHcCC
Confidence 4689999999999999988765 467899999999999999999887321000 00000 0011111111111110
Q ss_pred ----cCCCCCCCCCcCHHHHHHHHHHH----hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcE-EEEecCChHHH
Q 047607 231 ----IGLFNESWSSKNVQEKAQEIFKI----LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSK-VVFTSRDFEVC 299 (352)
Q Consensus 231 ----l~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~-IiiTTr~~~v~ 299 (352)
+..... .....+++.+.+... ..++.-++|||+++.. ..++.|+..+..- ..+++ |++||....+.
T Consensus 92 hpDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP-P~~v~FILaTtep~kLl 168 (700)
T PRK12323 92 FVDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-PEHVKFILATTDPQKIP 168 (700)
T ss_pred CCcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-CCCceEEEEeCChHhhh
Confidence 000000 122233333322221 1356679999999875 3455554444332 33444 55555555553
Q ss_pred hhc-cCCceeecCCCCHHHHHHHHHHhhccc
Q 047607 300 GQM-EAHRSFKVECLAYEDAWELFEEKVGRE 329 (352)
Q Consensus 300 ~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (352)
..+ +....+.++.++.++..+.+.+.+..+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHc
Confidence 322 234678999999999999888776443
No 40
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=4.5e-07 Score=88.79 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=92.4
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCC------------------CCCEEEEEEe
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPN------------------HFDFVIWVVV 214 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~ 214 (352)
.+++|.+..++.|..++..++. ..+.++|++|+||||+|+.+.+....... .|...++++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4689999999999999987654 56889999999999999999987621110 1112222222
Q ss_pred CCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH-hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEE-
Q 047607 215 SKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI-LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVV- 290 (352)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii- 290 (352)
.....+ .+...++..+... ..+++-++|+|+++.. ..++.+...+... ...+.+|
T Consensus 96 as~~gv--------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-p~~v~fIL 154 (546)
T PRK14957 96 ASRTGV--------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-PEYVKFIL 154 (546)
T ss_pred ccccCH--------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-CCCceEEE
Confidence 111111 1112222222211 2356679999999764 3344554444443 3445555
Q ss_pred EecCChHHHhh-ccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 291 FTSRDFEVCGQ-MEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 291 iTTr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
+||....+... .+....+++.+++.++....+.+.+.
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~ 192 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILA 192 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHH
Confidence 45544444322 23346889999999998888877553
No 41
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=5.6e-07 Score=87.09 Aligned_cols=165 Identities=13% Similarity=0.129 Sum_probs=90.5
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+.....|...+..+.. +.+.++|++|+||||+|+.+.+......... + .++........+...-.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~----~----~pc~~c~~c~~i~~g~~ 85 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKG----V----EPCNECRACRSIDEGTF 85 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC----C----CCCcccHHHHHHhcCCC
Confidence 4689999988888888887765 5689999999999999999988762111100 0 00001111111110000
Q ss_pred CCC---CCCCCcCHHHHHHHHHHH-----hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCC-hHHHhh
Q 047607 233 LFN---ESWSSKNVQEKAQEIFKI-----LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRD-FEVCGQ 301 (352)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~-~~v~~~ 301 (352)
... +.......... ..+.+. ..+++-++++|+++.. ...+.+...+... ...+.+|++|.+ ..+...
T Consensus 86 ~dv~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p-~~~vv~Ilattn~~kl~~~ 163 (472)
T PRK14962 86 MDVIELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP-PSHVVFVLATTNLEKVPPT 163 (472)
T ss_pred CccEEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC-CCcEEEEEEeCChHhhhHH
Confidence 000 00001111111 122222 2345679999999764 3344444444432 233444444433 344333
Q ss_pred c-cCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 302 M-EAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 302 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+ .....+.+.+++.++....+.+.+..
T Consensus 164 L~SR~~vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 164 IISRCQVIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred HhcCcEEEEECCccHHHHHHHHHHHHHH
Confidence 2 33457899999999998888887744
No 42
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=6.7e-07 Score=87.01 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=98.1
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC-EEEEEEeCCccCHHHHHHHHHHHc
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD-FVIWVVVSKDLQLEKIQECVAEKI 231 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l 231 (352)
.+++|.+..+..|...+..++ ...+.++|++|+||||+|+.+++..... .... .-.+..|. .......+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~-~~~~~~~~~~~C~----~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS-ALITENTTIKTCE----QCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-cccccCcCcCCCC----CChHHHHHhcCC
Confidence 457999999999988887765 4688999999999999999999887311 1110 00001111 111111111110
Q ss_pred CCCC---CCCCCcCHHHHHHHHHHH----hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEE-EecCChHHHhh
Q 047607 232 GLFN---ESWSSKNVQEKAQEIFKI----LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVV-FTSRDFEVCGQ 301 (352)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii-iTTr~~~v~~~ 301 (352)
.... +.......+++...+... +.+++-++|+|+++.. ..+..+...+... ...+.+| .||+...+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-p~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-PPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-CCCEEEEEEeCChHHhhHH
Confidence 0000 000112222222222211 2356779999999875 3466665444443 3455554 45555555443
Q ss_pred c-cCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 302 M-EAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 302 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
+ .....+++.+++.++....+.+.+...+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~eg 204 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQEN 204 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3 2345789999999999999998886544
No 43
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=6.1e-07 Score=89.05 Aligned_cols=172 Identities=14% Similarity=0.127 Sum_probs=95.8
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCC-CCCEEEEEEeCCccCHHHHHHHHHHHc
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPN-HFDFVIWVVVSKDLQLEKIQECVAEKI 231 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l 231 (352)
.+++|.+..+..|.+++..++. ..+.++|+.|+||||+|+.+.+....... ....... ..+........|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 4689999999999999988765 56799999999999999999877621110 0001000 1112222222221100
Q ss_pred CCCC---CCCCCcCHHHHHHHHHHH----hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEE-ecCChHHH-h
Q 047607 232 GLFN---ESWSSKNVQEKAQEIFKI----LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVF-TSRDFEVC-G 300 (352)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Iii-TTr~~~v~-~ 300 (352)
...- +.......++..+.+... ..++.-++|||+++.. ..++.+...+..- ...+++|+ ||....+. .
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-P~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP-PEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC-CCCeEEEEEECCchhhhHH
Confidence 0000 000112222222222211 1234558999999875 3455554444433 34455554 44444443 2
Q ss_pred hccCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 301 QMEAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
..+....+++++++.++..+.+.+.+...+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~eg 200 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAEN 200 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcC
Confidence 223446889999999999998888765443
No 44
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=7.7e-07 Score=86.01 Aligned_cols=168 Identities=15% Similarity=0.103 Sum_probs=94.7
Q ss_pred CccccchHHHHHHHHHHhcCCcE-EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+..++.|.+++..++.. .+.++|++|+||||+|+.+....... .... ..++........|.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~-~~~~-------~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS-NGPT-------SDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc-CCCC-------CCCccccHHHHHHhccCC
Confidence 46899999999999888877655 79999999999999999998754211 0000 001111112222222111
Q ss_pred CCCC---CCCCcCHHHHHHHHHH--H--hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEec-CChHHHhhc
Q 047607 233 LFNE---SWSSKNVQEKAQEIFK--I--LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTS-RDFEVCGQM 302 (352)
Q Consensus 233 ~~~~---~~~~~~~~~~~~~l~~--~--L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTT-r~~~v~~~~ 302 (352)
...- ..+....++....+.. . +.++.-++|+|+++.. ..++.+...+..- ...+++|++| ....+...+
T Consensus 85 ~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-p~~v~fIlatte~~Kl~~tI 163 (491)
T PRK14964 85 PDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP-APHVKFILATTEVKKIPVTI 163 (491)
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-CCCeEEEEEeCChHHHHHHH
Confidence 1000 0011122222111111 0 1345668999999764 2344444444433 4456555544 444554333
Q ss_pred -cCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 303 -EAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 303 -~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
+....+++.+++.++....+.+.+...+
T Consensus 164 ~SRc~~~~f~~l~~~el~~~L~~ia~~Eg 192 (491)
T PRK14964 164 ISRCQRFDLQKIPTDKLVEHLVDIAKKEN 192 (491)
T ss_pred HHhheeeecccccHHHHHHHHHHHHHHcC
Confidence 3446789999999999999888775543
No 45
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=3.4e-07 Score=87.66 Aligned_cols=168 Identities=11% Similarity=0.070 Sum_probs=96.0
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+..+..|..++..++. ..+.++|++|+||||+|+.+.+.... . .... ...|....+ ...+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e-~~~~--~~pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC-E-NPIG--NEPCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc-c-cccC--ccccCCCcH----HHHHHccCC
Confidence 4689999999999999988775 46899999999999999999998731 1 1110 001111111 112221111
Q ss_pred CCCCCC---CCcCH---HHHHHHHHHH-hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEE-EecCChHHHhhc
Q 047607 233 LFNESW---SSKNV---QEKAQEIFKI-LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVV-FTSRDFEVCGQM 302 (352)
Q Consensus 233 ~~~~~~---~~~~~---~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii-iTTr~~~v~~~~ 302 (352)
...-.. ..... .++...+... ..++.-++|+|+++.. ..++.+...+..- ......| .||....+...+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP-p~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP-PAHIVFILATTEFHKIPETI 168 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC-CCceEEEeecCChhhccHHH
Confidence 000000 11112 2222222211 2345669999999865 4466665444432 2344444 455544443222
Q ss_pred -cCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 303 -EAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 303 -~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
+....|.+.+++.++..+.+.+.+...+
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg 197 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIEN 197 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcC
Confidence 3345789999999999888888765443
No 46
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=1e-06 Score=86.14 Aligned_cols=166 Identities=11% Similarity=0.067 Sum_probs=90.2
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.++||.+..++.|.+++..+.. ..+.++|++|+||||+|+.+.+.... ...+.. .+++.......|...-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~~-------~pCg~C~~C~~i~~g~~ 87 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC-EKGVSA-------NPCNDCENCREIDEGRF 87 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC-CCCCCc-------ccCCCCHHHHHHhcCCC
Confidence 4689999999999999987765 45789999999999999999987731 111110 01111111111111000
Q ss_pred CCC---CCCCCcCHHHHHHHHHH----HhCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEec-CChHHHhh-
Q 047607 233 LFN---ESWSSKNVQEKAQEIFK----ILSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTS-RDFEVCGQ- 301 (352)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTT-r~~~v~~~- 301 (352)
... +.......++....+.. -..++.-++|+|+++.. ..++.+...+..- ...+++|++| ....+...
T Consensus 88 ~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-p~~~~fIlattd~~kl~~tI 166 (509)
T PRK14958 88 PDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-PSHVKFILATTDHHKLPVTV 166 (509)
T ss_pred ceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-CCCeEEEEEECChHhchHHH
Confidence 000 00011122222211111 11345668999999864 3344444333332 3456555554 43333222
Q ss_pred ccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 302 MEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
.+....+++.+++.++....+.+.+-.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~l~~il~~ 193 (509)
T PRK14958 167 LSRCLQFHLAQLPPLQIAAHCQHLLKE 193 (509)
T ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 223457889999998877776666533
No 47
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=1.8e-06 Score=79.80 Aligned_cols=153 Identities=14% Similarity=0.213 Sum_probs=97.6
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhcc---CCCCCCEEEEEEe-CCccCHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLV---SPNHFDFVIWVVV-SKDLQLEKIQECVA 228 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~-s~~~~~~~~~~~i~ 228 (352)
.+++|.+...+.+.+++..+. .+.+.++|+.|+||||+|+.++..... ...|+|...|... +....+.. .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 357899999999999998765 467799999999999999999986521 1346666555432 22222222 12222
Q ss_pred HHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCC--cccccccccCCCCCCCCCcEEEEecCChHH-Hhh-ccC
Q 047607 229 EKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWE--PVDLAQVGLPIPSPRSTSSKVVFTSRDFEV-CGQ-MEA 304 (352)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v-~~~-~~~ 304 (352)
+.+... -..+++-++|+|+++. ...++.+...+..- ..++.+|++|.+.+. ... .+.
T Consensus 83 ~~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-p~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 83 EEVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-PKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCC-CCCeEEEEEeCChHhCcHHHHhh
Confidence 222110 1124556777777654 34566666666654 667888888876542 111 223
Q ss_pred CceeecCCCCHHHHHHHHHHhh
Q 047607 305 HRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
...+.+.+++.++....+.+.+
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHh
Confidence 4688999999999888776653
No 48
>PRK09087 hypothetical protein; Validated
Probab=98.52 E-value=7.9e-07 Score=77.99 Aligned_cols=117 Identities=19% Similarity=0.108 Sum_probs=72.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
..+.+.|+|++|+|||+|++.++.... ..|++.. .+..+++..+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~------~~~~~~~~~~---------------------- 86 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPN------EIGSDAANAA---------------------- 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHH------HcchHHHHhh----------------------
Confidence 346799999999999999999887651 1133221 1111111111
Q ss_pred hCCCcEEEEEeCCCCcc-cccccccCCCCCCCCCcEEEEecCC---------hHHHhhccCCceeecCCCCHHHHHHHHH
Q 047607 254 LSDKKFMLLLDDIWEPV-DLAQVGLPIPSPRSTSSKVVFTSRD---------FEVCGQMEAHRSFKVECLAYEDAWELFE 323 (352)
Q Consensus 254 L~~kr~LlVlDdv~~~~-~~~~l~~~~~~~~~~gs~IiiTTr~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 323 (352)
.+ -+|++||+.... +-..+...+......|..+|+|++. +++...+....++++++++.++-.+++.
T Consensus 87 -~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 87 -AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred -hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 11 278889996531 1111222111111346789998873 3445555666789999999999999999
Q ss_pred Hhhccc
Q 047607 324 EKVGRE 329 (352)
Q Consensus 324 ~~~~~~ 329 (352)
+.+-..
T Consensus 164 ~~~~~~ 169 (226)
T PRK09087 164 KLFADR 169 (226)
T ss_pred HHHHHc
Confidence 988543
No 49
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.52 E-value=2.5e-06 Score=81.02 Aligned_cols=166 Identities=17% Similarity=0.217 Sum_probs=94.7
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
.++.|+++.+++|.+.+.. ..++-+.++|++|+|||++|+.+++.. ...| +.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~-----i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCE-----EEeeh----
Confidence 4578999999998876632 235678999999999999999999987 3322 22211
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCcc------------c----ccccccCCCC-C
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEPV------------D----LAQVGLPIPS-P 282 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~-~ 282 (352)
..+ ..... ... ......+.+.. ...+.+|+|||++... . +..+...+.. .
T Consensus 199 ~~l----~~~~~-------g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SEL----VQKFI-------GEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHH----hHhhc-------cch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111 11110 111 11222222222 3467899999997531 0 1111111111 0
Q ss_pred CCCCcEEEEecCChHHHh-h-c---cCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 283 RSTSSKVVFTSRDFEVCG-Q-M---EAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 283 ~~~gs~IiiTTr~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
...+..||.||...+... . . ..+..+.+++.+.++-.++|+.++..-....+-++..+++.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~ 332 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAEL 332 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHH
Confidence 024567887887543211 1 1 12457899999999999999987754332223345555543
No 50
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.51 E-value=1.3e-06 Score=78.57 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=81.0
Q ss_pred ccccchHHHHHHHHH---Hh------------cCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccC
Q 047607 155 SVVGLQSTFERVWSC---VM------------EDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQ 219 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~---L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 219 (352)
.++|.++.+++|.+. +. .+....+.++|++|+||||+|+.+++..... .......++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 478888777665433 21 0134678899999999999999998875211 11111122333221
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc----------cccccccCCCCCCCCCcEE
Q 047607 220 LEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV----------DLAQVGLPIPSPRSTSSKV 289 (352)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~~gs~I 289 (352)
++. ... ...........+... ...+|++|+++... ..+.+...+... .....+
T Consensus 84 --~l~----~~~-------~g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~-~~~~~v 146 (261)
T TIGR02881 84 --DLV----GEY-------IGHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN-RNEFVL 146 (261)
T ss_pred --Hhh----hhh-------ccchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc-CCCEEE
Confidence 111 111 001111112222221 23488999997531 223333333333 233455
Q ss_pred EEecCChHHHh------hc-c-CCceeecCCCCHHHHHHHHHHhhccc
Q 047607 290 VFTSRDFEVCG------QM-E-AHRSFKVECLAYEDAWELFEEKVGRE 329 (352)
Q Consensus 290 iiTTr~~~v~~------~~-~-~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (352)
|+++...+... .+ . ....+.+++++.++..+++.+.+...
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 55554332211 11 1 13467999999999999999887543
No 51
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.51 E-value=3.8e-07 Score=84.69 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=65.5
Q ss_pred HHHHHhc-CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHcCCCCCCCCCcC
Q 047607 166 VWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL--QLEKIQECVAEKIGLFNESWSSKN 242 (352)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 242 (352)
+++++.. ..-.-.+|+|++|+|||||++.+++... ..+|+.++||.+.+.. .+.+++..|...+-.+. .+...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~~ 234 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPA 234 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCCH
Confidence 4444443 2346788999999999999999999984 3489999999998887 77788877763221111 11111
Q ss_pred HH------HHHHHHHHH-hCCCcEEEEEeCCCC
Q 047607 243 VQ------EKAQEIFKI-LSDKKFMLLLDDIWE 268 (352)
Q Consensus 243 ~~------~~~~~l~~~-L~~kr~LlVlDdv~~ 268 (352)
.. ......... -.+++++|++|++..
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 11 111222222 367999999999974
No 52
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.49 E-value=3.1e-06 Score=84.57 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=108.2
Q ss_pred CCccccchHHHHHHHHHHhcC-CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC-ccCHHHHHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVMED-TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK-DLQLEKIQECVAEK 230 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~ 230 (352)
+.+.|-|.. |.+.|... +.+.+.|..|+|.|||||+.++... ...-..+.|.+++. +.++..++..++..
T Consensus 18 ~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~----~~~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWREL----AADGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred cccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHh----cCcccceeEeecCCccCCHHHHHHHHHHH
Confidence 455677765 44445444 7899999999999999999999873 34556799999866 55788899999998
Q ss_pred cCCCCCCC-----------CCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCccc------ccccccCCCCCCCCCcEEEE
Q 047607 231 IGLFNESW-----------SSKNVQEKAQEIFKILS--DKKFMLLLDDIWEPVD------LAQVGLPIPSPRSTSSKVVF 291 (352)
Q Consensus 231 l~~~~~~~-----------~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~gs~Iii 291 (352)
++...+.. ...+...+...+...+. .++.++||||.+-..+ +.-+.... ..+-..|+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~----P~~l~lvv 165 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA----PENLTLVV 165 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC----CCCeEEEE
Confidence 86433211 22344445555555553 4689999999875321 22233333 45689999
Q ss_pred ecCChHHHhhcc---CCcee----ecCCCCHHHHHHHHHHhhcc
Q 047607 292 TSRDFEVCGQME---AHRSF----KVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 292 TTr~~~v~~~~~---~~~~~----~l~~L~~~e~~~Lf~~~~~~ 328 (352)
|||+..-..... .+... ..-.|+.+|+-++|......
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l 209 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL 209 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC
Confidence 999864221111 12222 23478899999999887743
No 53
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=8.4e-07 Score=88.31 Aligned_cols=165 Identities=13% Similarity=0.107 Sum_probs=94.0
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.++||.+..++.|.+.+..++. ..+.++|+.|+||||+|+.+.+..... ..+. +.++........|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE-TGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc-cCCC-------CCCCCCCHHHHHHHcCCC
Confidence 4689999999999999988765 457899999999999999999887321 1100 011111122222221100
Q ss_pred CCC---CCCCCcCHHH---HHHHHHH-HhCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcE-EEEecCChHHHhh-
Q 047607 233 LFN---ESWSSKNVQE---KAQEIFK-ILSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSK-VVFTSRDFEVCGQ- 301 (352)
Q Consensus 233 ~~~---~~~~~~~~~~---~~~~l~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~-IiiTTr~~~v~~~- 301 (352)
..- +.......++ ++..+.. -..+++-++|||+++.. ..++.+...+-.- ....+ |++||....+...
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-p~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-CCCeEEEEecCCccccchHH
Confidence 000 0001112222 2222221 12456679999999865 3344443333322 23444 4455554544322
Q ss_pred ccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 302 MEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
.+....+.+.+|+.++....+.+.+-
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~ 192 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQ 192 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHH
Confidence 23346889999999999999987663
No 54
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=1.3e-06 Score=86.77 Aligned_cols=166 Identities=13% Similarity=0.145 Sum_probs=91.2
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH--
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK-- 230 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-- 230 (352)
.+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+.... ..... +..|. .......|...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC-~~~~~---~~pCg----~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC-ENAQH---GEPCG----VCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc-cCCCC---CCCCc----ccHHHHHHhccCc
Confidence 4689999999999999987764 57899999999999999999887621 11110 00111 00111111110
Q ss_pred ---cCCCCCCCCCcCHHHHHHHHHH----HhCCCcEEEEEeCCCCccc--ccccccCCCCCCCCCcEEEEecCC-hHHHh
Q 047607 231 ---IGLFNESWSSKNVQEKAQEIFK----ILSDKKFMLLLDDIWEPVD--LAQVGLPIPSPRSTSSKVVFTSRD-FEVCG 300 (352)
Q Consensus 231 ---l~~~~~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~gs~IiiTTr~-~~v~~ 300 (352)
+.... ......+.+...+.. -..+++-++|||+++.... ...+...+..- ...+++|++|.+ ..+..
T Consensus 88 ~DvlEida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-p~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 88 VDLLEIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-PEHVKFILATTDPHKVPV 164 (709)
T ss_pred cceEEEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-CCCcEEEEEeCCccccch
Confidence 00000 011222222222211 1235667999999976532 33343333322 344566666543 33221
Q ss_pred h-ccCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 301 Q-MEAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 301 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
. .+....+.+.+++.++....+.+.+-..+
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg 195 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEK 195 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 1 12234678889999999888887765443
No 55
>PRK05642 DNA replication initiation factor; Validated
Probab=98.45 E-value=9.9e-07 Score=77.89 Aligned_cols=125 Identities=16% Similarity=0.283 Sum_probs=76.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
...+.|+|.+|+|||.|++.+++... ..-..++|++... +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 36789999999999999999998762 2223466776432 1110 01122223
Q ss_pred CCCcEEEEEeCCCCc---ccccc-cccCCCCCCCCCcEEEEecCChH---------HHhhccCCceeecCCCCHHHHHHH
Q 047607 255 SDKKFMLLLDDIWEP---VDLAQ-VGLPIPSPRSTSSKVVFTSRDFE---------VCGQMEAHRSFKVECLAYEDAWEL 321 (352)
Q Consensus 255 ~~kr~LlVlDdv~~~---~~~~~-l~~~~~~~~~~gs~IiiTTr~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 321 (352)
.+-. +|++||+... ..|.. +...+......|..+|+|++... +..++....++++++++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 6889999642 34433 22222211134678899887432 233333456789999999999999
Q ss_pred HHHhhccc
Q 047607 322 FEEKVGRE 329 (352)
Q Consensus 322 f~~~~~~~ 329 (352)
+.+++...
T Consensus 175 l~~ka~~~ 182 (234)
T PRK05642 175 LQLRASRR 182 (234)
T ss_pred HHHHHHHc
Confidence 99776443
No 56
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.45 E-value=4.3e-06 Score=78.62 Aligned_cols=153 Identities=13% Similarity=0.220 Sum_probs=91.1
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCC-C------------------CCCEEEEEE
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSP-N------------------HFDFVIWVV 213 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~------------------~f~~~~wv~ 213 (352)
.+++|.++.++.|.+++..+.. +.+.++|++|+||||+|+.+........ . +++ .++++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEee
Confidence 4689999999999999987654 5788999999999999999988762111 0 122 12222
Q ss_pred eCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH-hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEE
Q 047607 214 VSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI-LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVV 290 (352)
Q Consensus 214 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii 290 (352)
.+...... +..++.+.+... ..+++-++|+|+++.. .....+...+... ...+.+|
T Consensus 93 ~~~~~~~~--------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-~~~~~lI 151 (355)
T TIGR02397 93 AASNNGVD--------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-PEHVVFI 151 (355)
T ss_pred ccccCCHH--------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-ccceeEE
Confidence 11111111 111122221111 2245568899998654 3344454444333 3456666
Q ss_pred EecCChH-HHhh-ccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 291 FTSRDFE-VCGQ-MEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 291 iTTr~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
++|.+.. +... .+....+++.+++.++..+++...+-.
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH
Confidence 6665543 2222 223357789999999998888876643
No 57
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=2.6e-06 Score=83.81 Aligned_cols=166 Identities=10% Similarity=0.088 Sum_probs=89.7
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+..++.|.+++..++. ..+.++|++|+||||+|+.+....... .... ..++........+...-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~-------~~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCE-TGVT-------ATPCGVCSACLEIDSGRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCC-CCCC-------CCCCCCCHHHHHHhcCCC
Confidence 4689999999999999987765 457899999999999999998877211 1000 001111011111110000
Q ss_pred CC---CCCCCCcCHHHHHHHHHHH----hCCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEec-CChHHHhh-
Q 047607 233 LF---NESWSSKNVQEKAQEIFKI----LSDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTS-RDFEVCGQ- 301 (352)
Q Consensus 233 ~~---~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTT-r~~~v~~~- 301 (352)
.. .+.......+++...+... ..+++-++|+|+++... ..+.+...+..- ...+.+|++| ....+...
T Consensus 88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-p~~~~fIL~t~d~~kil~tI 166 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-PEHVKFILATTDPQKIPVTV 166 (527)
T ss_pred CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC-CCCEEEEEEeCChhhCchhH
Confidence 00 0000111222222111111 13566799999998653 244444444332 3445555555 43333211
Q ss_pred ccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 302 MEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
.+....+++.+++.++..+.+.+.+..
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~il~~ 193 (527)
T PRK14969 167 LSRCLQFNLKQMPPPLIVSHLQHILEQ 193 (527)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 122357899999999988888776643
No 58
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=1.9e-06 Score=88.40 Aligned_cols=163 Identities=12% Similarity=0.064 Sum_probs=92.4
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+.+.... .... ..+........|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~-~~~~-------~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVE-GPTS-------TPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCccc-CCCC-------CCCcccHHHHHHHcCCC
Confidence 4589999999999999988765 4589999999999999999998873211 1100 00111111111111100
Q ss_pred CCC-----CCCCCcCHHHHHHHHHH-----HhCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEE-EecCChHHH
Q 047607 233 LFN-----ESWSSKNVQEKAQEIFK-----ILSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVV-FTSRDFEVC 299 (352)
Q Consensus 233 ~~~-----~~~~~~~~~~~~~~l~~-----~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii-iTTr~~~v~ 299 (352)
... +......++++.+ |.+ -..++.-++|||+++.. ..++.|+..+..- ...+.+| +||....+.
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-P~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP-PEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC-CCCeEEEEEeCChhhhh
Confidence 000 0001112222222 222 12355668899999865 3344444444433 3445544 454444454
Q ss_pred hhc-cCCceeecCCCCHHHHHHHHHHhh
Q 047607 300 GQM-EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 300 ~~~-~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
..+ +....|.+.+++.++..+++.+.+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHH
Confidence 333 345678999999999888887765
No 59
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.43 E-value=1.2e-06 Score=81.87 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=64.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc--cCHHHHHHHHHHHcCCCCCCCCCcC---H-HHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD--LQLEKIQECVAEKIGLFNESWSSKN---V-QEKA 247 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~---~-~~~~ 247 (352)
.-..++|+|++|+|||||++.+++... ..+|+..+|+.+.+. .++.++++.+...+-.......... . ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 446799999999999999999999983 448999999998866 7899999998554422211101111 1 1122
Q ss_pred HHHHHH-hCCCcEEEEEeCCCC
Q 047607 248 QEIFKI-LSDKKFMLLLDDIWE 268 (352)
Q Consensus 248 ~~l~~~-L~~kr~LlVlDdv~~ 268 (352)
+..... -.+++.+|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 222222 367999999999974
No 60
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.42 E-value=2.5e-06 Score=88.48 Aligned_cols=153 Identities=13% Similarity=0.170 Sum_probs=90.0
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccC--C-CCCCEEEE-EEeCCccCHHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVS--P-NHFDFVIW-VVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~-~~f~~~~w-v~~s~~~~~~~~~~~i~~ 229 (352)
..++||++++.++++.|.......+.++|++|+||||||+.+..+.... . .-....+| +.++. +.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l~----- 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------LQ----- 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------hh-----
Confidence 3589999999999999988777777899999999999999999987211 0 01122232 22211 00
Q ss_pred HcCCCCCCCCCcCHHHHHHHHHHHh--CCCcEEEEEeCCCCcc-------ccc--c-cccCCCCCCCCCcEEEEecCChH
Q 047607 230 KIGLFNESWSSKNVQEKAQEIFKIL--SDKKFMLLLDDIWEPV-------DLA--Q-VGLPIPSPRSTSSKVVFTSRDFE 297 (352)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~-------~~~--~-l~~~~~~~~~~gs~IiiTTr~~~ 297 (352)
.... .....+..+..+.+.+ .+++.+|++|+++... .-+ . +.+.+.. ..-++|-||...+
T Consensus 256 --ag~~---~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~---G~l~~IgaTT~~e 327 (852)
T TIGR03345 256 --AGAS---VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR---GELRTIAATTWAE 327 (852)
T ss_pred --cccc---cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC---CCeEEEEecCHHH
Confidence 0000 1111222222222222 2468999999997631 111 1 3333332 2456666666543
Q ss_pred HHhhc-------cCCceeecCCCCHHHHHHHHHHh
Q 047607 298 VCGQM-------EAHRSFKVECLAYEDAWELFEEK 325 (352)
Q Consensus 298 v~~~~-------~~~~~~~l~~L~~~e~~~Lf~~~ 325 (352)
..... ..-..+.+.+++.++..++|...
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 32111 12357899999999999997543
No 61
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=3.2e-06 Score=83.59 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=93.1
Q ss_pred CccccchHHHHHHHHHHhcCCcE-EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+.+..... ...+ + .+++.......|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~---~----~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA-QGPT---A----TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-cCCC---C----CcccccHHHHHhhcccC
Confidence 46899999999999999887654 57899999999999999999877311 1110 0 01111111122211100
Q ss_pred CCC-----CCCCCcCHHHH---HHHHHHH-hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcE-EEEecCChHHHh
Q 047607 233 LFN-----ESWSSKNVQEK---AQEIFKI-LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSK-VVFTSRDFEVCG 300 (352)
Q Consensus 233 ~~~-----~~~~~~~~~~~---~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~-IiiTTr~~~v~~ 300 (352)
... +.......++. ...+... ..+++-++|+|+++.. ...+.|...+..- ...+. |++||....+..
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp-p~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP-PEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC-CCCeEEEEEeCChHhhHH
Confidence 000 00011122222 2222111 1345668999999764 3344444444433 33444 445555555443
Q ss_pred hc-cCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 301 QM-EAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 301 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
.+ +....+++.+++.++..+.+.+.+..
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~ 192 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQ 192 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHH
Confidence 32 33468899999999988888776643
No 62
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.5e-06 Score=82.88 Aligned_cols=170 Identities=11% Similarity=0.130 Sum_probs=94.5
Q ss_pred CccccchHHHHHHHHHHhcCCcE-EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEE-eCCccCHHHHHHHHHHHc
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV-VSKDLQLEKIQECVAEKI 231 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 231 (352)
.+++|.+..++.|.+++.++..+ .+.++|++|+||||+|+.+.+.... ...+....|.. ...++........+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c-~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC-CCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 46899999999999999877654 5889999999999999999988732 11111111110 011111112222222211
Q ss_pred CCCC---CCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEec-CChHHHh
Q 047607 232 GLFN---ESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTS-RDFEVCG 300 (352)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTT-r~~~v~~ 300 (352)
...- +.......+++.+ +.+.+ .+++-++|+|+++.. ..++.+...+..- ...+.+|++| +...+..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep-~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP-PPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC-CCCeEEEEEeCChHHhHH
Confidence 1100 0001111233222 22322 345668899999765 3455555555443 4455655554 4444433
Q ss_pred hc-cCCceeecCCCCHHHHHHHHHHhh
Q 047607 301 QM-EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 301 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
.+ .....+++.+++.++..+.+...+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 22 223468899999998888777765
No 63
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.40 E-value=2e-06 Score=88.21 Aligned_cols=155 Identities=14% Similarity=0.216 Sum_probs=90.8
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCC--CCC-CEEEEEEeCCccCHHHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSP--NHF-DFVIWVVVSKDLQLEKIQECVAEK 230 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f-~~~~wv~~s~~~~~~~~~~~i~~~ 230 (352)
+.++||++++.++++.|......-+.++|++|+|||++|+.+.++..... ..+ ...+|. + +...+. ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~----a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL----AG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----hh
Confidence 35899999999999999877667778999999999999999999873111 111 233442 1 111111 10
Q ss_pred cCCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCcc----------cccc-cccCCCCCCCCCcEEEEecCChHH
Q 047607 231 IGLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEPV----------DLAQ-VGLPIPSPRSTSSKVVFTSRDFEV 298 (352)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~----------~~~~-l~~~~~~~~~~gs~IiiTTr~~~v 298 (352)
.. .....+..+..+.+.+ ..++.+|++|+++... +..+ +.+.+..+ .-++|-+|...+.
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g---~i~~IgaTt~~e~ 323 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG---KLRCIGSTTYEEY 323 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC---CeEEEEecCHHHH
Confidence 00 1112333333333333 3467899999997431 1112 23333322 3455555554222
Q ss_pred Hhhc-------cCCceeecCCCCHHHHHHHHHHhh
Q 047607 299 CGQM-------EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 299 ~~~~-------~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
.... ..-..+.+.+++.++..+++....
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1111 122478999999999999999654
No 64
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=5.4e-06 Score=78.37 Aligned_cols=157 Identities=13% Similarity=0.210 Sum_probs=88.8
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccC-----CCCCCE-EEEEEeCCccCHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVS-----PNHFDF-VIWVVVSKDLQLEKIQEC 226 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~-----~~~f~~-~~wv~~s~~~~~~~~~~~ 226 (352)
.+++|.+...+.+.+.+..+.. +.+.++|++|+||||+|+.+.+..... ...|.. ++.++......... ...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 4689999999999999987654 589999999999999999998876210 011211 11111111111111 111
Q ss_pred HHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEec-CChHHHhh-c
Q 047607 227 VAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTS-RDFEVCGQ-M 302 (352)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTT-r~~~v~~~-~ 302 (352)
+++.+... -..+++-++++|+++... .+..+...+... ...+.+|++| ....+... .
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-PAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-CCceEEEEEeCCcccCCHHHH
Confidence 11111100 012355689999987542 244443333322 3345555554 33333222 2
Q ss_pred cCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 303 EAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
+....+++.+++.++....+...+...+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g 184 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEG 184 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcC
Confidence 2345789999999999888887664433
No 65
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=3.1e-06 Score=83.32 Aligned_cols=166 Identities=12% Similarity=0.107 Sum_probs=92.1
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|++..++.|.+++..+. .+.+.++|++|+||||+|+.+.+.... .. |... ..+......+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C-~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC-LN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-CC------CCCC-CCCcccHHHHHHHcCCC
Confidence 468999999999999987765 457889999999999999999988731 11 1110 11112222222222111
Q ss_pred CCC---CCCCCcCHHHH---HHHHHHH-hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEE-ecCChHHHhh-
Q 047607 233 LFN---ESWSSKNVQEK---AQEIFKI-LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVF-TSRDFEVCGQ- 301 (352)
Q Consensus 233 ~~~---~~~~~~~~~~~---~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Iii-TTr~~~v~~~- 301 (352)
..- +.......++. ...+... ..+++-++|+|+++.. ..+..+...+..- ...+.+|+ |+....+...
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-p~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-PKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC-CCcEEEEEECCChHhhhHHH
Confidence 000 00011122222 2211110 1234457999999764 3344444433332 33455544 4444444322
Q ss_pred ccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 302 MEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
.+....+++.+++.++....+...+..
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~k 193 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKK 193 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHH
Confidence 233467899999999998888876643
No 66
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.36 E-value=7.2e-06 Score=74.53 Aligned_cols=154 Identities=10% Similarity=0.061 Sum_probs=82.5
Q ss_pred ccccchHHHHHHHHHHh---c-----------C-CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccC
Q 047607 155 SVVGLQSTFERVWSCVM---E-----------D-TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQ 219 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~---~-----------~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 219 (352)
.++|.++.+++|.++.. - . ....+.++|++|+|||++|+.+...... ......--++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH---
Confidence 46887776666544321 1 0 1236889999999999999888776621 11111112333332
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc-----------ccccccccCCCCCCCCCcE
Q 047607 220 LEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP-----------VDLAQVGLPIPSPRSTSSK 288 (352)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~gs~ 288 (352)
.+ +...+.+. . .......+.+. ..-+|+||++... +.+..+...+... ..+.+
T Consensus 99 -~~----l~~~~~g~----~---~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~-~~~~~ 162 (284)
T TIGR02880 99 -DD----LVGQYIGH----T---APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ-RDDLV 162 (284)
T ss_pred -HH----HhHhhccc----c---hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC-CCCEE
Confidence 12 22222111 1 11112222222 3368899999732 1122333333333 45567
Q ss_pred EEEecCChHHHhhcc--------CCceeecCCCCHHHHHHHHHHhhcc
Q 047607 289 VVFTSRDFEVCGQME--------AHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 289 IiiTTr~~~v~~~~~--------~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
||.++.......... ....+++++++.+|-.+++.+.+-.
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 777765433221111 1356899999999999999887743
No 67
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=4e-06 Score=82.89 Aligned_cols=166 Identities=12% Similarity=0.130 Sum_probs=93.7
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+..++.|.+.+..++ ...+.++|++|+||||+|+.+.+.... ...... ..++.....+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCCC-------CCCcccHHHHHHhcCCC
Confidence 468999999888999888765 578889999999999999999988731 111110 01111122222222110
Q ss_pred CCCCCC---CCcCHHHHHHHHHHH-----hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCC-hHHHhh
Q 047607 233 LFNESW---SSKNVQEKAQEIFKI-----LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRD-FEVCGQ 301 (352)
Q Consensus 233 ~~~~~~---~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~-~~v~~~ 301 (352)
...... .....++. ..|.+. ..+++-+||+|+++.. ..+..|...+..- .....+|++|.+ ..+...
T Consensus 88 pDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP-~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP-PARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc-CCCEEEEEecCChhhhhHH
Confidence 000000 01112221 122222 2356679999999765 3344454444332 334555555544 444322
Q ss_pred c-cCCceeecCCCCHHHHHHHHHHhhccc
Q 047607 302 M-EAHRSFKVECLAYEDAWELFEEKVGRE 329 (352)
Q Consensus 302 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (352)
+ +....+++.+++.++....+.+.+...
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~e 194 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGRE 194 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHc
Confidence 2 233578999999999998888766443
No 68
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=6.3e-06 Score=78.02 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=88.6
Q ss_pred CccccchHHHHHHHHHHhcCC----------cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDT----------IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKI 223 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 223 (352)
++++|.+..++.|.+++..+. .+.+.++|++|+|||++|+.+.......... +. ++.....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-----~~----~Cg~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-----EP----GCGECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-----CC----CCCCCHH
Confidence 468999999999999998753 4678899999999999999998866211100 00 1111111
Q ss_pred HHHHHHHcCCC----CCCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEe
Q 047607 224 QECVAEKIGLF----NESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFT 292 (352)
Q Consensus 224 ~~~i~~~l~~~----~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiT 292 (352)
...+.....+. .........+++. .+.+.+ .+++-++++|+++.. ...+.+...+..- ..++.+|++
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep-~~~~~fIL~ 153 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP-PPRTVWLLC 153 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC-CCCCeEEEE
Confidence 11111110000 0000112222222 222222 245568888999865 2223333333322 345555555
Q ss_pred cCC-hHHHhhc-cCCceeecCCCCHHHHHHHHHHh
Q 047607 293 SRD-FEVCGQM-EAHRSFKVECLAYEDAWELFEEK 325 (352)
Q Consensus 293 Tr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 325 (352)
|.+ ..+...+ +....+.+.+++.++..+.+.+.
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR 188 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh
Confidence 554 4443332 33468899999999999888754
No 69
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.34 E-value=5.6e-06 Score=76.55 Aligned_cols=143 Identities=14% Similarity=0.156 Sum_probs=84.1
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.++..+.+..++..+. ..++.++|++|+||||+|+.+++.. ... ...++.+. .....+ +..+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i-~~~l~~~- 91 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFV-RNRLTRF- 91 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHH-HHHHHHH-
Confidence 468999999999999998765 4677779999999999999998876 222 23444443 121111 1111111
Q ss_pred CCCCCCCCcCHHHHHHHHHHH--hCCCcEEEEEeCCCCc--ccc-cccccCCCCCCCCCcEEEEecCChH-HHhhc-cCC
Q 047607 233 LFNESWSSKNVQEKAQEIFKI--LSDKKFMLLLDDIWEP--VDL-AQVGLPIPSPRSTSSKVVFTSRDFE-VCGQM-EAH 305 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdv~~~--~~~-~~l~~~~~~~~~~gs~IiiTTr~~~-v~~~~-~~~ 305 (352)
... +.+.+-++|+||++.. .+. ..+...+... ..++++|+||.... +...+ +..
T Consensus 92 ------------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 92 ------------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-SKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred ------------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc-CCCceEEEEcCChhhchHHHHhhc
Confidence 000 1134568899999754 111 2222222222 45678888886532 11111 223
Q ss_pred ceeecCCCCHHHHHHHHHH
Q 047607 306 RSFKVECLAYEDAWELFEE 324 (352)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~ 324 (352)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677778888877666543
No 70
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.34 E-value=5.1e-06 Score=80.67 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=90.3
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccC--CCCCCEEEEEEeCCcc
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVS--PNHFDFVIWVVVSKDL 218 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~ 218 (352)
.++.|.+..+++|.+.+.- ..++-+.++|++|+|||++|+.+++..... ...+....++++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 3467899999888777531 135668999999999999999999987210 001223444544332
Q ss_pred CHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCcc---------c-----ccccccCCCCC-
Q 047607 219 QLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEPV---------D-----LAQVGLPIPSP- 282 (352)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~---------~-----~~~l~~~~~~~- 282 (352)
+++...... .......+....++.. .+++++|+||+++... + ...+...+..-
T Consensus 261 -------eLl~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 261 -------ELLNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred -------hhcccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 111111000 0111122222233222 3478999999997521 1 11222222211
Q ss_pred CCCCcEEEEecCChHHHh--hc---cCCceeecCCCCHHHHHHHHHHhhc
Q 047607 283 RSTSSKVVFTSRDFEVCG--QM---EAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 283 ~~~gs~IiiTTr~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
...+..||.||...+... .. ..+..+.+++.+.++..++|.+++.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 023455666776544311 11 2345689999999999999998864
No 71
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.31 E-value=1.5e-05 Score=67.98 Aligned_cols=137 Identities=12% Similarity=0.142 Sum_probs=79.3
Q ss_pred HHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCC-------------------CCCCEEEEEEeCCccCHHHHH
Q 047607 165 RVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSP-------------------NHFDFVIWVVVSKDLQLEKIQ 224 (352)
Q Consensus 165 ~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~s~~~~~~~~~ 224 (352)
.|.+.+..++. ..+.++|++|+||||+|+.+........ .+.+. .++....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~-------- 73 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEG-------- 73 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEecccc--------
Confidence 45666666655 6799999999999999999988873110 11111 1111110
Q ss_pred HHHHHHcCCCCCCCCCcCHHHH---HHHHHHH-hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCCh-H
Q 047607 225 ECVAEKIGLFNESWSSKNVQEK---AQEIFKI-LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRDF-E 297 (352)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~---~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~~-~ 297 (352)
.....+.. ...+... ..+.+-++|+||++.. ..++.+...+... ...+.+|++|++. .
T Consensus 74 --------------~~~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~-~~~~~~il~~~~~~~ 138 (188)
T TIGR00678 74 --------------QSIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEP-PPNTLFILITPSPEK 138 (188)
T ss_pred --------------CcCCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChHh
Confidence 01112222 1111110 1345678999999764 2344454444443 4456666666543 2
Q ss_pred HHhhc-cCCceeecCCCCHHHHHHHHHHh
Q 047607 298 VCGQM-EAHRSFKVECLAYEDAWELFEEK 325 (352)
Q Consensus 298 v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 325 (352)
+...+ .....+++.+++.++..+.+.+.
T Consensus 139 l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 139 LLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred ChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 32222 23458899999999999988887
No 72
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.31 E-value=6.4e-06 Score=78.21 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=56.9
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQE 225 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 225 (352)
.++++.++.++.+...|... +.+.++|++|+|||++|+.+++.. .....|..+.||.+++..+..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 45788889999999988753 577789999999999999999988 4456788899999998887766553
No 73
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=3.3e-05 Score=72.49 Aligned_cols=190 Identities=12% Similarity=0.188 Sum_probs=121.8
Q ss_pred CCccccchHHHHHHHHHHhc----CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
+..++||+.+++.+.+++.. +..+-+=|.|-+|.|||.+...++.+.. ....-..++++++..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~-~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLS-KSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhh-hhcccceeEEEeeccccchHHHHHHHH
Confidence 46789999999999888865 3567888999999999999999999883 222223678999887677888888888
Q ss_pred HHc--CCCCCCCCCcCHHHHHHHHHHHhCCC--cEEEEEeCCCCccc--cccccc--CCCCCCCCCcEEEEecCC--hHH
Q 047607 229 EKI--GLFNESWSSKNVQEKAQEIFKILSDK--KFMLLLDDIWEPVD--LAQVGL--PIPSPRSTSSKVVFTSRD--FEV 298 (352)
Q Consensus 229 ~~l--~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~--~~~l~~--~~~~~~~~gs~IiiTTr~--~~v 298 (352)
..+ +... .....+....+.++.... .+|+|+|+++.... -..+.. .++. -+++++|+.--. -+.
T Consensus 228 ~~~~q~~~s----~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~--lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 228 SSLLQDLVS----PGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK--LPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHhcC----CchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc--CCcceeeeeeehhhhhH
Confidence 877 2211 111155566666666443 58999999976321 111111 1122 245555443221 111
Q ss_pred ----Hhhcc-----CCceeecCCCCHHHHHHHHHHhhcccc--ccCCCCcHHHHhhhhcCCCC
Q 047607 299 ----CGQME-----AHRSFKVECLAYEDAWELFEEKVGREI--LLYIPLETNIHQAEVIPNSS 350 (352)
Q Consensus 299 ----~~~~~-----~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~l~~i~~~iv~~~~~ 350 (352)
...+. ....+...|.+.++..++|..+.-... ..-++.++-.+++.+= +|+
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa-~SG 363 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA-PSG 363 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc-Cch
Confidence 11111 234678899999999999999885433 2223457777777665 444
No 74
>CHL00181 cbbX CbbX; Provisional
Probab=98.30 E-value=1.6e-05 Score=72.22 Aligned_cols=155 Identities=11% Similarity=0.102 Sum_probs=83.8
Q ss_pred ccccchHHHHHHHHHH---h-----c-------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccC
Q 047607 155 SVVGLQSTFERVWSCV---M-----E-------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQ 219 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L---~-----~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 219 (352)
+++|.++.+++|.++. . . .....+.++|++|+||||+|+.+++.... ...-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecH---
Confidence 5788777666554432 1 0 12345889999999999999999887521 11111111343331
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc-----------ccccccccCCCCCCCCCcE
Q 047607 220 LEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP-----------VDLAQVGLPIPSPRSTSSK 288 (352)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~gs~ 288 (352)
..+ ....-.. . .......+.+. ..-+|+||+++.. +....+...+.+. ..+.+
T Consensus 100 -~~l----~~~~~g~----~---~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~-~~~~~ 163 (287)
T CHL00181 100 -DDL----VGQYIGH----T---APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ-RDDLV 163 (287)
T ss_pred -HHH----HHHHhcc----c---hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC-CCCEE
Confidence 122 2221110 0 11111222221 2348999999752 1112233333333 45567
Q ss_pred EEEecCChHHHhhc--------cCCceeecCCCCHHHHHHHHHHhhccc
Q 047607 289 VVFTSRDFEVCGQM--------EAHRSFKVECLAYEDAWELFEEKVGRE 329 (352)
Q Consensus 289 IiiTTr~~~v~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (352)
||+++....+.... .....+.+++++.++..+++.+.+-..
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 77777644432211 124578999999999999999887543
No 75
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=7.1e-06 Score=81.59 Aligned_cols=171 Identities=13% Similarity=0.098 Sum_probs=94.6
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCC-EEEEEEeCCccCHHHHHHHHHHHc
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD-FVIWVVVSKDLQLEKIQECVAEKI 231 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l 231 (352)
.+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+........-. ...+- .+....-...|....
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~~g~ 99 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIMEGR 99 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHhcCC
Confidence 4689999999999999987764 46899999999999999999987731110000 00011 111111122222221
Q ss_pred CCCCCC---CCCcCHHH---HHHHHHHH-hCCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEE-ecCChHHHhh
Q 047607 232 GLFNES---WSSKNVQE---KAQEIFKI-LSDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVF-TSRDFEVCGQ 301 (352)
Q Consensus 232 ~~~~~~---~~~~~~~~---~~~~l~~~-L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~Iii-TTr~~~v~~~ 301 (352)
....-. ......++ ++..++.. ..+++-++|+|+++... ..+.+...+..- ..++.+|+ ||....+...
T Consensus 100 h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-p~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP-PPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-CCCeEEEEEeCChhhhhHH
Confidence 110000 01122222 22222111 12455689999997653 344444333332 34555554 4444444322
Q ss_pred c-cCCceeecCCCCHHHHHHHHHHhhccc
Q 047607 302 M-EAHRSFKVECLAYEDAWELFEEKVGRE 329 (352)
Q Consensus 302 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (352)
+ +....+++.+++.++....+.+.+...
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~ke 207 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKE 207 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHc
Confidence 2 234578999999999998888876443
No 76
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.30 E-value=2e-06 Score=75.07 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=89.6
Q ss_pred ccccc-hHHHHHHHHHHhcC---CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 047607 155 SVVGL-QSTFERVWSCVMED---TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK 230 (352)
Q Consensus 155 ~~vGr-~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 230 (352)
.++|- ++..-.....+.++ ....+.|+|+.|+|||.|.+.+++........ ..++|++ ..++...+...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~-~~v~y~~------~~~f~~~~~~~ 82 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPG-KRVVYLS------AEEFIREFADA 82 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTT-S-EEEEE------HHHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcccc-ccceeec------HHHHHHHHHHH
Confidence 34564 33333444444332 24568899999999999999999987321122 2455654 45556666665
Q ss_pred cCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc---cccc-cccCCCCCCCCCcEEEEecCCh---------H
Q 047607 231 IGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV---DLAQ-VGLPIPSPRSTSSKVVFTSRDF---------E 297 (352)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~-l~~~~~~~~~~gs~IiiTTr~~---------~ 297 (352)
+.. .. ...+.+.++ .-=+|++||++... .|.. +...+......|.++|+|+... .
T Consensus 83 ~~~-------~~----~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~ 150 (219)
T PF00308_consen 83 LRD-------GE----IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPD 150 (219)
T ss_dssp HHT-------TS----HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HH
T ss_pred HHc-------cc----chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChh
Confidence 532 11 133444444 33488899997642 2222 1111111013567899999642 3
Q ss_pred HHhhccCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 298 VCGQMEAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 298 v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
+...+...-++++++++.++-..++.+.+....
T Consensus 151 L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 151 LRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp HHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred hhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 445555667899999999999999999986544
No 77
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.29 E-value=2.5e-05 Score=74.13 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=93.5
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
.++.|.+..+++|.+.+.- ...+-+.++|++|+|||+||+.+++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------ 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------ 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------
Confidence 3578998888888776531 135778999999999999999999987 3333 22211
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc------------c----ccccccCCCC-CC
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV------------D----LAQVGLPIPS-PR 283 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~-~~ 283 (352)
.. +.... .......+...+.......+.+|+||+++... . +..+...+.. ..
T Consensus 213 s~----l~~k~-------~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 SE----FVQKY-------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HH----HHHHh-------cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 11 11111 01111112222233334578999999987420 0 1111111111 00
Q ss_pred CCCcEEEEecCChHHHh--hc---cCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 284 STSSKVVFTSRDFEVCG--QM---EAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 284 ~~gs~IiiTTr~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
..+..||.||...+... .. .-+..+.+...+.++-.++|......-....+-++.++++.
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~ 346 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSR 346 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHH
Confidence 34667888887544321 11 23456889999999888888866543322233345555543
No 78
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.3e-05 Score=80.05 Aligned_cols=171 Identities=11% Similarity=0.098 Sum_probs=93.7
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEE-eCCccCHHHHHHHHHHHc
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV-VSKDLQLEKIQECVAEKI 231 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 231 (352)
.+++|.+..++.|.+++..+.. ..+.++|++|+||||+|+.+.+.... ...++.-.|-. ....+......+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c-~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC-CCcCCccccccccCCCCccCHHHHHHhccC
Confidence 4689999999999999987765 55899999999999999999988732 11111001111 001111222222222111
Q ss_pred CCCC---CCCCCcCHHHHHHHHHHH----hCCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEE-EecCChHHHhh
Q 047607 232 GLFN---ESWSSKNVQEKAQEIFKI----LSDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVV-FTSRDFEVCGQ 301 (352)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~Ii-iTTr~~~v~~~ 301 (352)
...- +.......+++...+... ..+.+-++|+|+++... ..+.+...+..- ...+.+| +|++...+...
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP-p~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP-PPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC-CCCeEEEEEeCChhhhhHH
Confidence 1100 000112233333222221 23455688999997653 344444444432 3344544 45444444433
Q ss_pred -ccCCceeecCCCCHHHHHHHHHHhh
Q 047607 302 -MEAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 302 -~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
......+++.+++.++....+.+.+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~ 199 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMIC 199 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHH
Confidence 2345688999999998887777655
No 79
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.27 E-value=3.9e-06 Score=72.17 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=72.8
Q ss_pred CccccchHHHHHHHHHHh-----cCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVM-----EDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
.+|+|.++.++.+.-++. .+...-+.+||+||+||||||..+.+.. ...|. +.+.+. +
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~---i-------- 86 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPA---I-------- 86 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchh---h--------
Confidence 579999998888654443 2356789999999999999999999998 44443 222211 1
Q ss_pred HHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--c-------cccccc--CCCCC---------CCCCcE
Q 047607 229 EKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--D-------LAQVGL--PIPSP---------RSTSSK 288 (352)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~-------~~~l~~--~~~~~---------~~~gs~ 288 (352)
....+++..+.. + +++-+|.+|+++... + .++... ....+ ..+-+-
T Consensus 87 ------------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 87 ------------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp -------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ------------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 111222222221 2 234467778887631 1 111100 00111 011233
Q ss_pred EEEecCChHHHhhccC--CceeecCCCCHHHHHHHHHHhhcc
Q 047607 289 VVFTSRDFEVCGQMEA--HRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 289 IiiTTr~~~v~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
|=-|||...+...+.. .-..+++..+.+|-.++..+.+..
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~ 194 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI 194 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH
Confidence 4457887655444432 224589999999999999987743
No 80
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=6.6e-06 Score=76.81 Aligned_cols=168 Identities=12% Similarity=0.092 Sum_probs=94.9
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCC-CCCEEEEEEeCCccCHHHHHHHHHHHc
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPN-HFDFVIWVVVSKDLQLEKIQECVAEKI 231 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l 231 (352)
..++|.++....+...+..+. ...+.|+|+.|+||||+|..+......... .+.... ....+.-....+.|...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHcCC
Confidence 458999999999999998775 456999999999999999999998732110 011110 111111112233332221
Q ss_pred C-------CCC-CC----CCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcE-EEE
Q 047607 232 G-------LFN-ES----WSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSK-VVF 291 (352)
Q Consensus 232 ~-------~~~-~~----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~-Iii 291 (352)
. .+. +. .....+++. ..+.+++ .+++-++|+|+++... ..+.+...+..- ..++. |++
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp-p~~~~fiLi 177 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP-PARALFILI 177 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC-CCCceEEEE
Confidence 1 000 00 011223332 3444444 3466799999998652 233333333222 23344 555
Q ss_pred ecCChHHHhhc-cCCceeecCCCCHHHHHHHHHHhh
Q 047607 292 TSRDFEVCGQM-EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 292 TTr~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
|++...+...+ +....+.+.+++.++..+++.+..
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~ 213 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG 213 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhh
Confidence 55544333222 233588999999999999998843
No 81
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.25 E-value=0.00018 Score=74.56 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=86.1
Q ss_pred CCccccchHHHHHHHHHHhc------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQEC 226 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 226 (352)
..+++|.++..+.|.+++.. .+..++.++|++|+|||++|+.+.+.. ...|-. ++++...+...+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~~---i~~~~~~~~~~i~-- 390 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFVR---FSLGGVRDEAEIR-- 390 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh---cCCeEE---EeCCCcccHHHHc--
Confidence 34578999999998886642 134589999999999999999999987 334322 2223222222221
Q ss_pred HHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc---------cccccc-----CCCCC------CCCC
Q 047607 227 VAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD---------LAQVGL-----PIPSP------RSTS 286 (352)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~---------~~~l~~-----~~~~~------~~~g 286 (352)
.............+.+.+.... ...-+|+||+++.... +-.+.. .|.+. ...+
T Consensus 391 ------g~~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 391 ------GHRRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred ------CCCCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 1111011111222333343332 3344789999976421 111111 11111 0123
Q ss_pred cEEEEecCChH-H-HhhccCCceeecCCCCHHHHHHHHHHhh
Q 047607 287 SKVVFTSRDFE-V-CGQMEAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 287 s~IiiTTr~~~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
..+|.||.... + ....+....+.+.+++.++-.+++..+.
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 34455554432 1 1112233578999999999988887654
No 82
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.22 E-value=1.1e-05 Score=73.77 Aligned_cols=164 Identities=18% Similarity=0.217 Sum_probs=105.5
Q ss_pred CCccccchHHHHHHHHHHhcCC---cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVMEDT---IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 229 (352)
.+.|.+|+..+..+..++.++. +.++-|+|-.|.|||.+.+++++.. .. ..+|+++-..++..-++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 4678999999999999987653 4566899999999999999999987 22 3579999999999999999999
Q ss_pred HcCCCCCCCCC-----cCHHHHHHHHHH--Hh--CCCcEEEEEeCCCCcccccccccC-------CCCCCCCCcEEEEec
Q 047607 230 KIGLFNESWSS-----KNVQEKAQEIFK--IL--SDKKFMLLLDDIWEPVDLAQVGLP-------IPSPRSTSSKVVFTS 293 (352)
Q Consensus 230 ~l~~~~~~~~~-----~~~~~~~~~l~~--~L--~~kr~LlVlDdv~~~~~~~~l~~~-------~~~~~~~gs~IiiTT 293 (352)
+.+..+..... ....+.+..+.+ .. +++.++||||+++...+.+.+..+ +.+ .+ .-+|+++
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~-~i~iils 155 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EP-TIVIILS 155 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CC-ceEEEEe
Confidence 99633221111 112223333333 11 246899999999876554432111 111 23 3333433
Q ss_pred CC--hHHHh-hccCCc--eeecCCCCHHHHHHHHHHh
Q 047607 294 RD--FEVCG-QMEAHR--SFKVECLAYEDAWELFEEK 325 (352)
Q Consensus 294 r~--~~v~~-~~~~~~--~~~l~~L~~~e~~~Lf~~~ 325 (352)
.. +.... .++... ++.....+.+|-..+|.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 32 22222 133333 4567778888877777553
No 83
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.2e-05 Score=78.64 Aligned_cols=150 Identities=13% Similarity=0.193 Sum_probs=91.3
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccC--------------------CCCCCEEEEE
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVS--------------------PNHFDFVIWV 212 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~~f~~~~wv 212 (352)
.+++|.+...+.|..++..+.. ..+.++|+.|+||||+|+.+....... ..+|+ +..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEe
Confidence 4689999999999999988765 558999999999999999998876211 01222 1122
Q ss_pred EeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH----hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCC
Q 047607 213 VVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI----LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTS 286 (352)
Q Consensus 213 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~g 286 (352)
+.+.. ...+++...+.+. ..+++-++|+|+++.. ..++.+...+..- ..+
T Consensus 96 d~~~~-----------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-p~~ 151 (614)
T PRK14971 96 DAASN-----------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-PSY 151 (614)
T ss_pred ccccc-----------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC-CCC
Confidence 22111 1122222211110 1245568899999765 3344554444432 344
Q ss_pred cEEEE-ecCChHHHhhc-cCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 287 SKVVF-TSRDFEVCGQM-EAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 287 s~Iii-TTr~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+.+|+ ||+...+...+ +....+++.+++.++....+.+.+-.
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~ 195 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASK 195 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHH
Confidence 55544 55545444332 33467899999999988888876543
No 84
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.20 E-value=1.7e-05 Score=82.62 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=88.1
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCC----CCE-EEEEEeCCccCHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNH----FDF-VIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~-~~wv~~s~~~~~~~~~~~i~ 228 (352)
..++||++++.++++.|.......+.++|++|+|||+||+.+..... .... ... ++++.++. +.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~vp~~l~~~~~~~l~l~~------l~---- 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPEGLKGRRVLALDMGA------LV---- 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh-cCCCchhhCCCEEEEEehhh------hh----
Confidence 34899999999999999877777788999999999999999998872 1111 122 22222221 11
Q ss_pred HHcCCCCCCCCCcCHHHHHHHHHHHh--CCCcEEEEEeCCCCcc---------ccccc-ccCCCCCCCCCcEEEEecCCh
Q 047607 229 EKIGLFNESWSSKNVQEKAQEIFKIL--SDKKFMLLLDDIWEPV---------DLAQV-GLPIPSPRSTSSKVVFTSRDF 296 (352)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~---------~~~~l-~~~~~~~~~~gs~IiiTTr~~ 296 (352)
.... .....+..+..+...+ .+++.+|++|+++... +..++ .+.+.. ..-++|-+|...
T Consensus 247 ag~~------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~---g~l~~IgaTt~~ 317 (857)
T PRK10865 247 AGAK------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR---GELHCVGATTLD 317 (857)
T ss_pred hccc------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc---CCCeEEEcCCCH
Confidence 0000 1111222222222222 2578999999997542 11223 333332 245666666655
Q ss_pred HHHhhcc-------CCceeecCCCCHHHHHHHHHHhh
Q 047607 297 EVCGQME-------AHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 297 ~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
+...... .-..+.+...+.++...++....
T Consensus 318 e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 318 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 4321111 12356677778899998886543
No 85
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.20 E-value=9.1e-06 Score=84.49 Aligned_cols=154 Identities=17% Similarity=0.211 Sum_probs=90.5
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCC---CCEEEEEEeCCccCHHHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNH---FDFVIWVVVSKDLQLEKIQECVAEK 230 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~ 230 (352)
..++||+++++++++.|.....+-+.++|++|+|||++|..+........-. -...+|. .+...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-----l~~~~l~------ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-----LDIGLLL------ 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-----eeHHHHh------
Confidence 3479999999999999987666677899999999999999999886211111 1234442 1222221
Q ss_pred cCCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCcc---------ccccc-ccCCCCCCCCCcEEEEecCChHHH
Q 047607 231 IGLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEPV---------DLAQV-GLPIPSPRSTSSKVVFTSRDFEVC 299 (352)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~---------~~~~l-~~~~~~~~~~gs~IiiTTr~~~v~ 299 (352)
.+.. .....++.+..+.+.+ ..++.+|++|+++... +..++ .+.+.. ..-++|-+|...+..
T Consensus 248 -ag~~---~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r---g~l~~IgaTt~~ey~ 320 (821)
T CHL00095 248 -AGTK---YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR---GELQCIGATTLDEYR 320 (821)
T ss_pred -ccCC---CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC---CCcEEEEeCCHHHHH
Confidence 1110 1122333333333333 3568999999996421 11222 222222 235566666655432
Q ss_pred hhc-------cCCceeecCCCCHHHHHHHHHHh
Q 047607 300 GQM-------EAHRSFKVECLAYEDAWELFEEK 325 (352)
Q Consensus 300 ~~~-------~~~~~~~l~~L~~~e~~~Lf~~~ 325 (352)
... .....+.+...+.++...++...
T Consensus 321 ~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 321 KHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 211 12346788889999988887753
No 86
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=2.4e-05 Score=75.68 Aligned_cols=163 Identities=10% Similarity=0.116 Sum_probs=89.0
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHc-
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKI- 231 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l- 231 (352)
.+++|.+..++.|.+++..+.. ..+.++|++|+||||+|+.+.+.........+.. .+........+...-
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~-------~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQE-------PCNQCASCKEISSGTS 89 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCC-------CCcccHHHHHHhcCCC
Confidence 4689999999999999987765 6688999999999999999988763111000000 000000000000000
Q ss_pred ----CCCCCCCCCcCHHHHHHHHHHH-----hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecC-ChHHH
Q 047607 232 ----GLFNESWSSKNVQEKAQEIFKI-----LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSR-DFEVC 299 (352)
Q Consensus 232 ----~~~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr-~~~v~ 299 (352)
..... .....++.. .+.+. ..+++-++|+|+++.. ...+.+...+..- ...+.+|++|. ...+.
T Consensus 90 ~d~~~i~g~--~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep-~~~~~~Il~t~~~~kl~ 165 (451)
T PRK06305 90 LDVLEIDGA--SHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP-PQHVKFFLATTEIHKIP 165 (451)
T ss_pred CceEEeecc--ccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC-CCCceEEEEeCChHhcc
Confidence 00000 011111111 11111 1356678999998754 2333444344333 34555665553 33332
Q ss_pred hh-ccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 300 GQ-MEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
.. .+....+++.+++.++....+.+.+-
T Consensus 166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred hHHHHhceEEeCCCCCHHHHHHHHHHHHH
Confidence 22 22345789999999998888877653
No 87
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=4.2e-05 Score=71.81 Aligned_cols=170 Identities=16% Similarity=0.119 Sum_probs=94.5
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCC-CCE-EE-EEEeCCccCHHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNH-FDF-VI-WVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~-~~-wv~~s~~~~~~~~~~~i~~ 229 (352)
.+++|.++..+.|.+.+..+.. ..+.++|+.|+||+|+|..+.......... ... .. -.++. .+......+.|..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~~i~~ 97 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVARRIAA 97 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHHHHHc
Confidence 5689999999999999988764 469999999999999999998877321110 000 00 00000 0000111112211
Q ss_pred HcCCC--------CCC----CCCcCHHHHHHHHHHHhC-----CCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEE
Q 047607 230 KIGLF--------NES----WSSKNVQEKAQEIFKILS-----DKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVV 290 (352)
Q Consensus 230 ~l~~~--------~~~----~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii 290 (352)
.-.+. .+. .....+++ +..+.+.+. +++-++|+|+++.. .....+...+..- ..++.+|
T Consensus 98 ~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep-p~~~~~I 175 (365)
T PRK07471 98 GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP-PARSLFL 175 (365)
T ss_pred cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC-CCCeEEE
Confidence 11000 000 01122333 333444442 45678999999764 2333343333322 3456666
Q ss_pred EecCCh-HHHhhc-cCCceeecCCCCHHHHHHHHHHhh
Q 047607 291 FTSRDF-EVCGQM-EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 291 iTTr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
++|.+. .+...+ +....+.+.+++.++..+++.+..
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 666654 333222 334578999999999999998764
No 88
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.7e-05 Score=74.91 Aligned_cols=150 Identities=12% Similarity=0.144 Sum_probs=88.6
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCC------------------CCEEEEEEe
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNH------------------FDFVIWVVV 214 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~------------------f~~~~wv~~ 214 (352)
.+++|.+.....|.+++..+.. +.+.++|++|+||||+|+.+.......... |...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 4589999999999999987654 457889999999999999998876211000 111111111
Q ss_pred CCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--ccccccccCCCCCCCCCc
Q 047607 215 SKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSS 287 (352)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs 287 (352)
+. ....++ +..+.+.+ .+++-++|+|+++.. ..++.+...+... ....
T Consensus 96 as-----------------------~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-p~~~ 150 (486)
T PRK14953 96 AS-----------------------NRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-PPRT 150 (486)
T ss_pred cc-----------------------CCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-CCCe
Confidence 11 111111 11222221 346679999999764 2334443333332 3344
Q ss_pred EEEE-ecCChHHHhh-ccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 288 KVVF-TSRDFEVCGQ-MEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 288 ~Iii-TTr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
.+|+ ||+...+... ......+.+.+++.++....+.+.+-.
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~ 193 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE 193 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH
Confidence 4444 4444343322 223457899999999988888876643
No 89
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.18 E-value=1.6e-05 Score=82.91 Aligned_cols=154 Identities=14% Similarity=0.183 Sum_probs=89.0
Q ss_pred ccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCC----CCEEEEEEeCCccCHHHHHHHHHHH
Q 047607 155 SVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNH----FDFVIWVVVSKDLQLEKIQECVAEK 230 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~ 230 (352)
.++||++++.+++..|.......+.++|++|+|||++|..+..+... ... ....+|.- ++..+. ..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l-----~~~~l~----a~ 243 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLAL-----DMGALI----AG 243 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEe-----eHHHHh----hc
Confidence 48999999999999998776677779999999999999999987621 111 12223321 111111 00
Q ss_pred cCCCCCCCCCcCHHHHHHHHHHHh-C-CCcEEEEEeCCCCcc---------cccccccCCCCCCCCCcEEEEecCChHHH
Q 047607 231 IGLFNESWSSKNVQEKAQEIFKIL-S-DKKFMLLLDDIWEPV---------DLAQVGLPIPSPRSTSSKVVFTSRDFEVC 299 (352)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~L-~-~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~~gs~IiiTTr~~~v~ 299 (352)
.. .....+..+..+.+.+ + +++.+|++|+++... +..++..+... ...-++|-+|...+..
T Consensus 244 ~~------~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 244 AK------YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEYR 315 (852)
T ss_pred ch------hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHHH
Confidence 00 1112233333333333 2 468999999997531 11122222222 2234566566554432
Q ss_pred hhc-------cCCceeecCCCCHHHHHHHHHHhh
Q 047607 300 GQM-------EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 300 ~~~-------~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
..+ ..-..+.+...+.++...++....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 211 122467899999999999887653
No 90
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.18 E-value=9.2e-06 Score=77.80 Aligned_cols=137 Identities=22% Similarity=0.221 Sum_probs=80.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
...+.|+|++|+|||+|++.+++... ....-..++|+++ ..+...+...+... .. ..+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRNN-------KM----EEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CH----HHHHHHH
Confidence 45789999999999999999999873 1111224566643 33444555554211 12 2233333
Q ss_pred CCCcEEEEEeCCCCccc---c-cccccCCCCCCCCCcEEEEecCCh-H--------HHhhccCCceeecCCCCHHHHHHH
Q 047607 255 SDKKFMLLLDDIWEPVD---L-AQVGLPIPSPRSTSSKVVFTSRDF-E--------VCGQMEAHRSFKVECLAYEDAWEL 321 (352)
Q Consensus 255 ~~kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~gs~IiiTTr~~-~--------v~~~~~~~~~~~l~~L~~~e~~~L 321 (352)
++ .-+|+|||++.... + ..+...+......+..+|+|+... . +...+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 32 34889999975321 1 112211111002355688877642 1 222333345789999999999999
Q ss_pred HHHhhcccc
Q 047607 322 FEEKVGREI 330 (352)
Q Consensus 322 f~~~~~~~~ 330 (352)
+.+.+....
T Consensus 277 l~~~~~~~~ 285 (405)
T TIGR00362 277 LQKKAEEEG 285 (405)
T ss_pred HHHHHHHcC
Confidence 999885543
No 91
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.17 E-value=8.8e-06 Score=78.39 Aligned_cols=134 Identities=17% Similarity=0.138 Sum_probs=80.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
...+.|+|++|+|||+|++.+++... .....+++++ ...+...+...+... ....++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~------~~~f~~~~~~~l~~~-----------~~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVR------SELFTEHLVSAIRSG-----------EMQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEee------HHHHHHHHHHHHhcc-----------hHHHHHHHc
Confidence 35788999999999999999999873 1223345554 334444555554211 112344444
Q ss_pred CCCcEEEEEeCCCCccc--c--cccccCCCCCCCCCcEEEEecCCh---------HHHhhccCCceeecCCCCHHHHHHH
Q 047607 255 SDKKFMLLLDDIWEPVD--L--AQVGLPIPSPRSTSSKVVFTSRDF---------EVCGQMEAHRSFKVECLAYEDAWEL 321 (352)
Q Consensus 255 ~~kr~LlVlDdv~~~~~--~--~~l~~~~~~~~~~gs~IiiTTr~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 321 (352)
+ +.-+|++||+..... + +.+...|......|..||+||... .+..++..+..+.+.+++.++-..+
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 344888899865421 1 122221110002356788888542 2233334456889999999999999
Q ss_pred HHHhhccc
Q 047607 322 FEEKVGRE 329 (352)
Q Consensus 322 f~~~~~~~ 329 (352)
+.+++-..
T Consensus 280 L~~k~~~~ 287 (445)
T PRK12422 280 LERKAEAL 287 (445)
T ss_pred HHHHHHHc
Confidence 99887543
No 92
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.2e-05 Score=77.38 Aligned_cols=167 Identities=13% Similarity=0.165 Sum_probs=94.6
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+.+... ...... -...++.......|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4689999999999998887654 5678999999999999999998872 111100 0011222233333433221
Q ss_pred CCC---CCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecC-ChHHHhh
Q 047607 233 LFN---ESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSR-DFEVCGQ 301 (352)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr-~~~v~~~ 301 (352)
... +.......++.. .+.+.+ .+++-++|+|+++.. ...+.|...+... ...+.+|++|. ...+...
T Consensus 89 ~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep-p~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP-PPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC-CCCeEEEEEeCChhhhhHH
Confidence 110 000112222222 222222 245678999999764 3344554444433 34555555554 3333322
Q ss_pred c-cCCceeecCCCCHHHHHHHHHHhhccc
Q 047607 302 M-EAHRSFKVECLAYEDAWELFEEKVGRE 329 (352)
Q Consensus 302 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (352)
+ +....+.+.+++.++....+.+.+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~e 195 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAE 195 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHc
Confidence 2 233577899999998888887776443
No 93
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.17 E-value=9.4e-06 Score=78.31 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=82.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC-EEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD-FVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
...+.|+|++|+|||+|++.+++... ..++. .++|++. .+++.++...+... .. ..+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~----~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG-------KL----NEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cH----HHHHHH
Confidence 45699999999999999999999873 22222 4666653 44556666555321 11 223334
Q ss_pred hCCCcEEEEEeCCCCcc---cc-cccccCCCCCCCCCcEEEEecC-ChH--------HHhhccCCceeecCCCCHHHHHH
Q 047607 254 LSDKKFMLLLDDIWEPV---DL-AQVGLPIPSPRSTSSKVVFTSR-DFE--------VCGQMEAHRSFKVECLAYEDAWE 320 (352)
Q Consensus 254 L~~kr~LlVlDdv~~~~---~~-~~l~~~~~~~~~~gs~IiiTTr-~~~--------v~~~~~~~~~~~l~~L~~~e~~~ 320 (352)
+..+.-+|++||++... .+ ..+...+......|..||+||. .+. +...+...-++.+++.+.+.-..
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 44455689999997531 11 1222222111023457888875 322 12223344578999999999999
Q ss_pred HHHHhhccc
Q 047607 321 LFEEKVGRE 329 (352)
Q Consensus 321 Lf~~~~~~~ 329 (352)
++.+.+...
T Consensus 271 IL~~~~~~~ 279 (440)
T PRK14088 271 IARKMLEIE 279 (440)
T ss_pred HHHHHHHhc
Confidence 999887543
No 94
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.7e-05 Score=79.03 Aligned_cols=164 Identities=10% Similarity=0.133 Sum_probs=89.8
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+...+.|.+++..++. +.+.++|+.|+||||+|+.+.+..... .... ..+++.......|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~-~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE-QGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC-CCCC-------CCCCCccHHHHHHhcCCC
Confidence 4689999999999999987765 567899999999999999998876211 1110 001111111111111100
Q ss_pred CCC---CCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEE-EecCChHHHhh
Q 047607 233 LFN---ESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVV-FTSRDFEVCGQ 301 (352)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~Ii-iTTr~~~v~~~ 301 (352)
... +.......++. ..+.+.+ .+++-++|+|+++... ..+.+...+..- ...+.+| +||....+...
T Consensus 88 ~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-p~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-PPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-CCCeEEEEEeCChhhhhHH
Confidence 000 00011112221 2222222 2455689999997652 334443333322 3344544 55555555433
Q ss_pred c-cCCceeecCCCCHHHHHHHHHHhhc
Q 047607 302 M-EAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 302 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
+ +....+++.+++.++....+...+.
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~ 192 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIAD 192 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHH
Confidence 2 3345778999999888877776553
No 95
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=2.6e-05 Score=78.44 Aligned_cols=160 Identities=11% Similarity=0.098 Sum_probs=90.2
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+..++.|.+++..++ .+.+.++|++|+||||+|+.+............ +-.|.. .... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~---~~pC~~-------C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL---LEPCQE-------CIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC---CCchhH-------HHHh---hc
Confidence 458999999999999998765 456789999999999999999887621111000 000000 0000 00
Q ss_pred CCCC-----CCCCcCHH---HHHHHHHHH-hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcE-EEEecCChHHHh
Q 047607 233 LFNE-----SWSSKNVQ---EKAQEIFKI-LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSK-VVFTSRDFEVCG 300 (352)
Q Consensus 233 ~~~~-----~~~~~~~~---~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~-IiiTTr~~~v~~ 300 (352)
.... .......+ ++...+... ..+++-++|+|+++.. ..+..+...+..- ...+. |++|++...+..
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-P~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-PKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-CCceEEEEEcCChhhhhH
Confidence 0000 00111122 222222211 2356669999999764 3344443333322 23344 555555555543
Q ss_pred h-ccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 301 Q-MEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 301 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
. .+....+.+.+++.++....+...+.
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHH
Confidence 2 23345889999999999888887553
No 96
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.14 E-value=9.8e-06 Score=78.66 Aligned_cols=135 Identities=21% Similarity=0.217 Sum_probs=80.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
...+.|+|++|+|||+|++.+.+... ....-..++|++.. .+...+...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 45689999999999999999999983 11112245566543 334444444421 111 2333344
Q ss_pred CCCcEEEEEeCCCCccc---c-cccccCCCCCCCCCcEEEEecCChH---------HHhhccCCceeecCCCCHHHHHHH
Q 047607 255 SDKKFMLLLDDIWEPVD---L-AQVGLPIPSPRSTSSKVVFTSRDFE---------VCGQMEAHRSFKVECLAYEDAWEL 321 (352)
Q Consensus 255 ~~kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~gs~IiiTTr~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 321 (352)
+ +.-+|+|||++.... + ..+...|......|..||+||.... +...+....++++++++.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 344899999975311 1 1222211110023456888776431 233344456789999999999999
Q ss_pred HHHhhcc
Q 047607 322 FEEKVGR 328 (352)
Q Consensus 322 f~~~~~~ 328 (352)
+.+.+..
T Consensus 289 l~~~~~~ 295 (450)
T PRK00149 289 LKKKAEE 295 (450)
T ss_pred HHHHHHH
Confidence 9998854
No 97
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.14 E-value=1.1e-05 Score=71.78 Aligned_cols=167 Identities=13% Similarity=0.119 Sum_probs=100.5
Q ss_pred CCccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEE-EEeCCccCHHHHHHHHHHHc
Q 047607 153 PTSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIW-VVVSKDLQLEKIQECVAEKI 231 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~i~~~l 231 (352)
-.+++|.+..+.-|.+.+.....+....+||+|.|||+-|..+.... ...+.|.+.+- .+.|......-+-
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr------- 106 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVR------- 106 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchh-------
Confidence 34689999999999999988778999999999999999999999988 33455554332 2333322111000
Q ss_pred CCCCCCCCCcCHHHHHHHHHHHh--CCCc-EEEEEeCCCCc--ccccccccCCCCCCCCCcE-EEEecCChHHHhhc-cC
Q 047607 232 GLFNESWSSKNVQEKAQEIFKIL--SDKK-FMLLLDDIWEP--VDLAQVGLPIPSPRSTSSK-VVFTSRDFEVCGQM-EA 304 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~-IiiTTr~~~v~~~~-~~ 304 (352)
.+..+...+........ .-++ -.||||+.+.. +.|..+...+.+- ...++ |+||+--..+...+ +.
T Consensus 107 ------~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~-s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 107 ------EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF-SRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred ------hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc-ccceEEEEEcCChhhCChHHHhh
Confidence 01111111111111011 0133 37889999875 6688776665554 44455 45554433322211 22
Q ss_pred CceeecCCCCHHHHHHHHHHhhccccccCC
Q 047607 305 HRSFKVECLAYEDAWELFEEKVGREILLYI 334 (352)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~ 334 (352)
..-|..++|.+++...-+...+-.++...+
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d 209 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDID 209 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCC
Confidence 246789999999998888888765553333
No 98
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.13 E-value=9.5e-06 Score=71.32 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=75.8
Q ss_pred ccc-cchHHH-HHHHHHHhc-CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHc
Q 047607 155 SVV-GLQSTF-ERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKI 231 (352)
Q Consensus 155 ~~v-Gr~~~~-~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 231 (352)
+|+ |.+... ..+.++... .....+.|+|++|+|||+||+.+++... ...+ ...++++.... .. +
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~------~~----~ 85 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPL------LA----F 85 (227)
T ss_pred ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhH------HH----H
Confidence 344 554433 444444432 3456789999999999999999999862 2222 34455443211 00 0
Q ss_pred CCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcccc--cccccCCCCCCCCCc-EEEEecCChHH--------Hh
Q 047607 232 GLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVDL--AQVGLPIPSPRSTSS-KVVFTSRDFEV--------CG 300 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~--~~l~~~~~~~~~~gs-~IiiTTr~~~v--------~~ 300 (352)
... ...-+|++||++....+ ..+...+......+. .+|+|++.... ..
T Consensus 86 --------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 86 --------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred --------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 011 22347889999754322 122222221102333 46666664322 11
Q ss_pred hccCCceeecCCCCHHHHHHHHHHhh
Q 047607 301 QMEAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
.+.....+.+.++++++-..++.+.+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 22234678999999988777777644
No 99
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=5.2e-05 Score=74.18 Aligned_cols=167 Identities=10% Similarity=0.132 Sum_probs=90.9
Q ss_pred CccccchHHHHHHHHHHhcCCcE-EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+...+.|..++..++.. .+.++|++|+||||+|+.+.+..... ...+. .++....-...+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~-~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE-QGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC-CCCCC-------CCCcccHHHHHHhhcCC
Confidence 46899999999999999877654 67899999999999999998876211 11000 00001111111111100
Q ss_pred CCC---CCCCCcCHHHHHHHHHHH----hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCCh-HHHhh-
Q 047607 233 LFN---ESWSSKNVQEKAQEIFKI----LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRDF-EVCGQ- 301 (352)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~~-~v~~~- 301 (352)
... +.......+++.+.+... ..+++-++|+|+++.. ...+.+...+..- ...+++|++|.+. .+...
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-p~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-PSYVKFILATTDPLKLPATI 164 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-CCceEEEEEECChhhCchHH
Confidence 000 000111122222222210 1245568999999765 2333443333332 3456656555542 32221
Q ss_pred ccCCceeecCCCCHHHHHHHHHHhhccc
Q 047607 302 MEAHRSFKVECLAYEDAWELFEEKVGRE 329 (352)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (352)
.+....+++.+++.++....+.+.+...
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~E 192 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKE 192 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHc
Confidence 2234578999999999988888766443
No 100
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.12 E-value=1.5e-05 Score=76.21 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=92.3
Q ss_pred ccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 155 SVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
++.|.++.+++|.+.+.- ....-+.++|++|+|||+||+.+++.. ...|- .+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi---~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATFL---RVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCEE---EEecch-----
Confidence 467899988888776631 134568899999999999999999987 34442 222111
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc----------------ccccccCCC--CCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD----------------LAQVGLPIP--SPR 283 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 283 (352)
+ .... ...........+.....+.+.+|+||+++.... +..+...+. ..
T Consensus 253 -L----~~k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~- 319 (438)
T PTZ00361 253 -L----IQKY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS- 319 (438)
T ss_pred -h----hhhh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc-
Confidence 1 1111 011111122222223345778999999863210 001111111 11
Q ss_pred CCCcEEEEecCChHHHhh-c----cCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHh
Q 047607 284 STSSKVVFTSRDFEVCGQ-M----EAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQ 342 (352)
Q Consensus 284 ~~gs~IiiTTr~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~ 342 (352)
..+.+||.||...+.... + ..+..+.+...+.++-.++|..+...-....+.++..++.
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~ 383 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIM 383 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHH
Confidence 345678888876543222 1 1245789999999999999998764332222334555543
No 101
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.12 E-value=8.6e-05 Score=72.99 Aligned_cols=166 Identities=15% Similarity=0.093 Sum_probs=89.4
Q ss_pred CccccchHHHHHHHHHHh---c---------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVM---E---------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.++..+++.+.+. . ...+-+.++|++|+|||+||+.+.+.. ..+| +.++ ..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~----~~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSIS----GS 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eecc----HH
Confidence 357888877666554432 2 123468899999999999999999876 2232 2221 11
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc----c--------c----cccccCCC--CCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV----D--------L----AQVGLPIP--SPR 283 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----~--------~----~~l~~~~~--~~~ 283 (352)
.+ .... .......+...+.......+++|+|||++... . + ..+...+. ..
T Consensus 123 ~~----~~~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~- 190 (495)
T TIGR01241 123 DF----VEMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT- 190 (495)
T ss_pred HH----HHHH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC-
Confidence 11 1111 01112223333333445567899999996521 0 0 11111111 11
Q ss_pred CCCcEEEEecCChHH-----HhhccCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 284 STSSKVVFTSRDFEV-----CGQMEAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 284 ~~gs~IiiTTr~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
..+..||.||..... .+....+..+.+...+.++-.++|...+.......+.++..+++.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~ 255 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARR 255 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHh
Confidence 244566667765432 111123467889999998888888877643322222334444443
No 102
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.12 E-value=1.9e-05 Score=80.60 Aligned_cols=155 Identities=17% Similarity=0.246 Sum_probs=91.1
Q ss_pred ccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCC---CCEEEEEEeCCccCHHHHHHHHHHHc
Q 047607 155 SVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNH---FDFVIWVVVSKDLQLEKIQECVAEKI 231 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~l 231 (352)
.++||++++.++++.|.......+.++|++|+|||++|+.+........-. .++.+|.. +...+ +.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--
Confidence 489999999999999987655666789999999999999999875221212 23444421 22111 10
Q ss_pred CCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCc----------ccccccccCCCCCCCCCcEEEEecCChHHHh
Q 047607 232 GLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEP----------VDLAQVGLPIPSPRSTSSKVVFTSRDFEVCG 300 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~ 300 (352)
+.. ...+.+.....+...+ +.+..+|++|+++.. .+...+..++.. ...-++|-+|...+...
T Consensus 256 -G~~---~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 -GTK---YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSN 329 (758)
T ss_pred -ccc---hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHHH
Confidence 000 1112233333333333 346789999999742 112222222222 23455666665544321
Q ss_pred hc-------cCCceeecCCCCHHHHHHHHHHhh
Q 047607 301 QM-------EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 301 ~~-------~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
.. ..-..+.+.+++.++..+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11 122478999999999999998654
No 103
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.10 E-value=1.2e-05 Score=64.15 Aligned_cols=90 Identities=20% Similarity=0.104 Sum_probs=50.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
...+.|+|++|+||||+++.+..... .....+++++.+........... ........ ...........+.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHH
Confidence 35789999999999999999999882 32234566655443322221111 00011000 2222233333444444
Q ss_pred CCC-cEEEEEeCCCCccc
Q 047607 255 SDK-KFMLLLDDIWEPVD 271 (352)
Q Consensus 255 ~~k-r~LlVlDdv~~~~~ 271 (352)
+.. ..+|++|+++....
T Consensus 75 ~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 75 RKLKPDVLILDEITSLLD 92 (148)
T ss_pred HhcCCCEEEEECCcccCC
Confidence 443 48999999987643
No 104
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.10 E-value=1.2e-05 Score=77.62 Aligned_cols=137 Identities=13% Similarity=0.128 Sum_probs=83.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
...+.|+|.+|+|||+|++.+.+.... ...-..+++++ ...+...+...+.... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~~---------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKTH---------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHhh---------hHHHHHHHHh
Confidence 356899999999999999999997621 12222345553 4556666666663210 1223444444
Q ss_pred CCCcEEEEEeCCCCcc---cc-cccccCCCCCCCCCcEEEEecCCh---------HHHhhccCCceeecCCCCHHHHHHH
Q 047607 255 SDKKFMLLLDDIWEPV---DL-AQVGLPIPSPRSTSSKVVFTSRDF---------EVCGQMEAHRSFKVECLAYEDAWEL 321 (352)
Q Consensus 255 ~~kr~LlVlDdv~~~~---~~-~~l~~~~~~~~~~gs~IiiTTr~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 321 (352)
+ +.-+||+||+.... .+ +.+...|......|..||+|+... .+...+..+-++.+++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 4 33488899996532 12 222222211112455788887632 2334444556788999999999999
Q ss_pred HHHhhcc
Q 047607 322 FEEKVGR 328 (352)
Q Consensus 322 f~~~~~~ 328 (352)
+.+++-.
T Consensus 284 L~~~~~~ 290 (450)
T PRK14087 284 IKKEIKN 290 (450)
T ss_pred HHHHHHh
Confidence 9998854
No 105
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.08 E-value=1.3e-05 Score=63.76 Aligned_cols=69 Identities=23% Similarity=0.177 Sum_probs=41.7
Q ss_pred EEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCC-
Q 047607 178 VGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSD- 256 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~- 256 (352)
|.|+|++|+|||++|+.+++.. . ...+.++.+...+. ........+...+.+.-..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~---~~~~~i~~~~~~~~-----------------~~~~~~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---G---FPFIEIDGSELISS-----------------YAGDSEQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---T---SEEEEEETTHHHTS-----------------STTHHHHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc---c---cccccccccccccc-----------------cccccccccccccccccccc
Confidence 5799999999999999999998 2 22345544332100 0122222233333333223
Q ss_pred CcEEEEEeCCCCc
Q 047607 257 KKFMLLLDDIWEP 269 (352)
Q Consensus 257 kr~LlVlDdv~~~ 269 (352)
++.+|+|||++..
T Consensus 58 ~~~vl~iDe~d~l 70 (132)
T PF00004_consen 58 KPCVLFIDEIDKL 70 (132)
T ss_dssp TSEEEEEETGGGT
T ss_pred cceeeeeccchhc
Confidence 3799999999764
No 106
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=6.7e-05 Score=74.35 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=92.8
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+..++.|..++..++. +.+.++|++|+||||+|+.+.+.... ...... ..|.. ....+.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c-~~~~~~---~pC~~----C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC-VNGPTP---MPCGE----CSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc-ccCCCC---CCCcc----chHHHHHHcCCC
Confidence 4689999999999999987654 56889999999999999999988731 111100 00111 111111111100
Q ss_pred CCC---CCCCCcCHHHHHHHH---HH-HhCCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEec-CChHHHhhc
Q 047607 233 LFN---ESWSSKNVQEKAQEI---FK-ILSDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTS-RDFEVCGQM 302 (352)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l---~~-~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTT-r~~~v~~~~ 302 (352)
..- +.......++..+.. .. -..+++-++|+|+++... .++.+...+..- ...+.+|++| ....+...+
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-p~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-PPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC-CCCEEEEEecCChHHhHHHH
Confidence 000 000112222222221 11 123566689999997653 345554444443 3445555554 434443322
Q ss_pred -cCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 303 -EAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 303 -~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+....+++.+++.++....+.+.+..
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~ 193 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLE 193 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHH
Confidence 23456899999999988888776633
No 107
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=7.3e-05 Score=74.92 Aligned_cols=168 Identities=13% Similarity=0.124 Sum_probs=93.0
Q ss_pred CccccchHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
..++|.+.....|..++..+.. ..+.++|++|+||||+|+.+...... . .+.... ...+......+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~-~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC-L-NSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC-C-CcCCCC----CCCCcccHHHHHHhcCCC
Confidence 4579999999999999987653 67889999999999999999998731 1 111000 011222233333332221
Q ss_pred CCC---CCCCCcCHHHHHHHHHHH----hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecC-ChHHHhhc
Q 047607 233 LFN---ESWSSKNVQEKAQEIFKI----LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSR-DFEVCGQM 302 (352)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr-~~~v~~~~ 302 (352)
... +.......+...+.+... ..+++-++|+|+++.. ..+..|...+..- ...+.+|++|. ...+...+
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-p~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-PPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-CcCeEEEEEeCChhhhhHHH
Confidence 100 000112222222222111 1245568999999865 3344454444432 33444444444 33333222
Q ss_pred -cCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 303 -EAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 303 -~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+....+++.+++.++....+.+.+..
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHH
Confidence 23456788899998888777765543
No 108
>PRK06620 hypothetical protein; Validated
Probab=98.07 E-value=5.7e-06 Score=71.92 Aligned_cols=109 Identities=17% Similarity=0.090 Sum_probs=67.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhC
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILS 255 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 255 (352)
+.+.|+|++|+|||+|++.+.+.. .. .++. ... .. . +.++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~--------------------~~---~-------~~~~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIF--------------------FN---E-------EILE 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhh--------------------hc---h-------hHHh
Confidence 668999999999999999987765 21 1111 000 00 0 0111
Q ss_pred CCcEEEEEeCCCCccc--ccccccCCCCCCCCCcEEEEecCCh-------HHHhhccCCceeecCCCCHHHHHHHHHHhh
Q 047607 256 DKKFMLLLDDIWEPVD--LAQVGLPIPSPRSTSSKVVFTSRDF-------EVCGQMEAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 256 ~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~gs~IiiTTr~~-------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
..-++++||++...+ +-.+...+. ..|..+|+|++.. .+..++...-++++++++.++-..++.+.+
T Consensus 85 -~~d~lliDdi~~~~~~~lf~l~N~~~---e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 -KYNAFIIEDIENWQEPALLHIFNIIN---EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred -cCCEEEEeccccchHHHHHHHHHHHH---hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 234788999974321 111111112 3467899998742 234444455689999999999888888876
Q ss_pred cc
Q 047607 327 GR 328 (352)
Q Consensus 327 ~~ 328 (352)
..
T Consensus 161 ~~ 162 (214)
T PRK06620 161 SI 162 (214)
T ss_pred HH
Confidence 53
No 109
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00051 Score=68.00 Aligned_cols=161 Identities=18% Similarity=0.164 Sum_probs=92.9
Q ss_pred CCccccchHHHHHHHHHHhc------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQEC 226 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 226 (352)
+.+-+|.++..++|++.|.- -+-++++++||||+|||+|++.+..-. .+.|- -++++.-.+-.++-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkfv---R~sLGGvrDEAEIR-- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFV---RISLGGVRDEAEIR-- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEE---EEecCccccHHHhc--
Confidence 34569999999999998842 256899999999999999999999988 44442 12222222222221
Q ss_pred HHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc-c--------ccccccC-----CCC----CCCCCcE
Q 047607 227 VAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV-D--------LAQVGLP-----IPS----PRSTSSK 288 (352)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-~--------~~~l~~~-----~~~----~~~~gs~ 288 (352)
++....-..=...+++.+.+ .+.+.-+++||+++... + +-++..| |.+ -.--=|.
T Consensus 394 ------GHRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 394 ------GHRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ------cccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 10000000111223333332 24567899999998531 1 1111111 100 0011233
Q ss_pred -EEEecCCh-H--HHhhccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 289 -VVFTSRDF-E--VCGQMEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 289 -IiiTTr~~-~--v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+.|+|-|. + -++.+....++++.+.+++|-.++-+++...
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiP 510 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIP 510 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcch
Confidence 44555542 2 2444556689999999999999998888744
No 110
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00084 Score=66.37 Aligned_cols=160 Identities=15% Similarity=0.129 Sum_probs=90.6
Q ss_pred CCccccchHHHHHHHHHHhc------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQEC 226 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 226 (352)
..+-+|.++..++|++.+.= -+-.+++.+||||+|||++|+.+..-. .+.|- -++++.-.+..++-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFf---RfSvGG~tDvAeIk-- 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKFF---RFSVGGMTDVAEIK-- 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCceE---EEeccccccHHhhc--
Confidence 44569999999999998742 267899999999999999999999988 33332 23444444444432
Q ss_pred HHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc------------------cccccccCCCCCCCCCcE
Q 047607 227 VAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV------------------DLAQVGLPIPSPRSTSSK 288 (352)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------------~~~~l~~~~~~~~~~gs~ 288 (352)
+..-..-..=...+++-|+ ..+...-|+.||+|+... +=..+...+.+-..-=|+
T Consensus 482 ------GHRRTYVGAMPGkiIq~LK-~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 482 ------GHRRTYVGAMPGKIIQCLK-KVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred ------ccceeeeccCChHHHHHHH-hhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhh
Confidence 1100000011122223222 224466799999997521 111122221111122366
Q ss_pred EEE-ecCCh--H-HHhhccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 289 VVF-TSRDF--E-VCGQMEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 289 Iii-TTr~~--~-v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
|++ .|-|. . -.........++|.+...+|-.++-.++..
T Consensus 555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred eEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 654 33331 0 122223446889999999988887777653
No 111
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=9.5e-05 Score=73.46 Aligned_cols=165 Identities=14% Similarity=0.132 Sum_probs=91.8
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|.+...+.|.+++..++ .+.+.++|+.|+||||+|+.+...... ....+ ..+++.......|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c-~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNC-LNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCC-------CCCCCccHHHHHHhcCCC
Confidence 568999999999999998765 456788999999999999999887621 11100 011111122222222111
Q ss_pred CCCCCC---CCcCHHHHHHHHHHH-----hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcE-EEEecCChHHHhh
Q 047607 233 LFNESW---SSKNVQEKAQEIFKI-----LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSK-VVFTSRDFEVCGQ 301 (352)
Q Consensus 233 ~~~~~~---~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~-IiiTTr~~~v~~~ 301 (352)
...... .....++. ..+... ..++.-++|+|+++.. ..+..|...+..- ...+. |+.||....+...
T Consensus 88 ~dv~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-p~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-PAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-CCCeEEEEEeCChhhCcHH
Confidence 100000 11222222 222222 1345668899999764 3344444333332 23344 4445554444322
Q ss_pred c-cCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 302 M-EAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 302 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+ +....+.+.+++.++....+...+-.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~ 193 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDK 193 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHH
Confidence 2 23457889999999988888876643
No 112
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.02 E-value=7.2e-05 Score=67.33 Aligned_cols=113 Identities=14% Similarity=0.229 Sum_probs=78.3
Q ss_pred CccccchH---HHHHHHHHHhcC---CcEEEEEEecCCCcHHHHHHHHHHhhccCCC---CCCEEEEEEeCCccCHHHHH
Q 047607 154 TSVVGLQS---TFERVWSCVMED---TIGIVGLYGMGGVGKTTLLTQINNKFLVSPN---HFDFVIWVVVSKDLQLEKIQ 224 (352)
Q Consensus 154 ~~~vGr~~---~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~s~~~~~~~~~ 224 (352)
+.++|-.. .++.|.++|... ..+-+.|+|.+|.|||++++.+........+ .--.++.|.....++...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 45677543 334455555432 4577999999999999999999987632111 11157888899999999999
Q ss_pred HHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 047607 225 ECVAEKIGLFNESWSSKNVQEKAQEIFKILSD-KKFMLLLDDIWE 268 (352)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~ 268 (352)
..|+.+++.+.. ...+...........++. +--+||+|++++
T Consensus 114 ~~IL~~lgaP~~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 114 SAILEALGAPYR--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHhCcccC--CCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 999999987653 233444444555555544 456999999987
No 113
>CHL00176 ftsH cell division protein; Validated
Probab=98.02 E-value=6.1e-05 Score=75.62 Aligned_cols=152 Identities=15% Similarity=0.158 Sum_probs=86.2
Q ss_pred CccccchHHHHHHHHH---HhcC---------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSC---VMED---------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~---L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.++.|.++..+++.+. +... ..+-+.++|++|+|||+||+.++... ..+| +.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~-----i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPF-----FSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCe-----eeccH----H
Confidence 4578887766665444 3322 24568999999999999999999876 2222 22221 1
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc------------c----ccccccCCCCC-CC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV------------D----LAQVGLPIPSP-RS 284 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~~-~~ 284 (352)
.+. ... ...........+.......+++|+|||++... . +..+...+..- ..
T Consensus 251 ~f~----~~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFV----EMF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHH----HHh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111 111 01111223333444456788999999996431 0 11222111110 13
Q ss_pred CCcEEEEecCChHHHh-h-c---cCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 285 TSSKVVFTSRDFEVCG-Q-M---EAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 285 ~gs~IiiTTr~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
.+..||.||...+... . . ..+..+.+...+.++-.++|+.++..
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence 4566777777644321 1 1 13457788888999988888887644
No 114
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.02 E-value=0.00046 Score=71.11 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=89.1
Q ss_pred CCccccchHHHHHHHHHHhc------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQEC 226 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 226 (352)
..+.+|.++..++|+++|.. ....++.++|++|+||||+++.+.... ...|-. ++++...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~---i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYVR---MALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE---EEcCCCCCHHHhccc
Confidence 45579999999999988752 245689999999999999999999876 333322 333333233222111
Q ss_pred HHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc-c-----cccccCC---------------CCCCCC
Q 047607 227 VAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD-L-----AQVGLPI---------------PSPRST 285 (352)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-~-----~~l~~~~---------------~~~~~~ 285 (352)
-... .........+.+... ....-+|+||+++.... . ..+...+ +.. ..
T Consensus 395 ~~~~--------~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~d-ls 464 (784)
T PRK10787 395 RRTY--------IGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYD-LS 464 (784)
T ss_pred hhcc--------CCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEeccccccccc-CC
Confidence 0000 111112233333322 22345789999975321 0 1111111 111 23
Q ss_pred CcEEEEecCChHHHh-hccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 286 SSKVVFTSRDFEVCG-QMEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 286 gs~IiiTTr~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
+.-+|.|+....+.. ..+....+.+.+++.++-.++.+++..
T Consensus 465 ~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 465 DVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 344455554433211 122335789999999999999888774
No 115
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.99 E-value=6e-05 Score=71.78 Aligned_cols=134 Identities=15% Similarity=0.183 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC
Q 047607 159 LQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW 238 (352)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 238 (352)
+..-..++.+.+..... ++.|.|+-++||||+++.+..... .. .++++.........
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~---------------- 78 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRI---------------- 78 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchh----------------
Confidence 33445555555544433 999999999999999977777662 22 56655433211111
Q ss_pred CCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHH-----hhc-cCCceeecCC
Q 047607 239 SSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVC-----GQM-EAHRSFKVEC 312 (352)
Q Consensus 239 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~-----~~~-~~~~~~~l~~ 312 (352)
...+....+.+.-..++.+|+||+|....+|......+.+. .+. +|++|+.+.... ... +....+.+-|
T Consensus 79 ---~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~-~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 79 ---ELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDR-GNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred ---hHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHcc-ccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 11111111222112277899999999999999887777765 444 888888876542 222 2345789999
Q ss_pred CCHHHHHH
Q 047607 313 LAYEDAWE 320 (352)
Q Consensus 313 L~~~e~~~ 320 (352)
||..|...
T Consensus 154 lSF~Efl~ 161 (398)
T COG1373 154 LSFREFLK 161 (398)
T ss_pred CCHHHHHh
Confidence 99999865
No 116
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.98 E-value=2.4e-05 Score=68.62 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=30.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEe
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV 214 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 214 (352)
-.++|+|.+|+|||||...+.... ...|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 467899999999999999999887 678888877754
No 117
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00011 Score=71.06 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=61.8
Q ss_pred ccccchHHHHHHHHHHhc------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHH
Q 047607 155 SVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEK 222 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 222 (352)
++=|.++.+.+|.+++.. ...+-+.++|++|+|||.||+.+.++. .-.| +.++-+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch-----
Confidence 456788888888777642 146778999999999999999999998 2232 222221
Q ss_pred HHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 047607 223 IQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWE 268 (352)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 268 (352)
+|+..+ ...+.+.+-+.+.+.-..-.+++.+|+++-
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 233322 334444444555556677899999999974
No 118
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.96 E-value=4.6e-05 Score=75.28 Aligned_cols=137 Identities=19% Similarity=0.136 Sum_probs=82.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
...+.|+|..|+|||.|++.+++.... ...--.++|++ ...+..++...+.. . ....+.+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yit------aeef~~el~~al~~-------~----~~~~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVS------SEEFTNEFINSIRD-------G----KGDSFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEee------HHHHHHHHHHHHHh-------c----cHHHHHHHh
Confidence 356899999999999999999998731 11112345654 34444455444421 1 112233334
Q ss_pred CCCcEEEEEeCCCCc---cccc-ccccCCCCCCCCCcEEEEecCCh---------HHHhhccCCceeecCCCCHHHHHHH
Q 047607 255 SDKKFMLLLDDIWEP---VDLA-QVGLPIPSPRSTSSKVVFTSRDF---------EVCGQMEAHRSFKVECLAYEDAWEL 321 (352)
Q Consensus 255 ~~kr~LlVlDdv~~~---~~~~-~l~~~~~~~~~~gs~IiiTTr~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 321 (352)
++ -=+|+|||+... ..|. .+...|......+..|||||... .+...+...-++.+++.+.+.-..+
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 33 347889999754 2222 12222211112456788888752 2344445567889999999999999
Q ss_pred HHHhhcccc
Q 047607 322 FEEKVGREI 330 (352)
Q Consensus 322 f~~~~~~~~ 330 (352)
+.+++....
T Consensus 455 L~kka~~r~ 463 (617)
T PRK14086 455 LRKKAVQEQ 463 (617)
T ss_pred HHHHHHhcC
Confidence 999885543
No 119
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.00018 Score=66.32 Aligned_cols=172 Identities=13% Similarity=0.147 Sum_probs=96.3
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCC------------CCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSP------------NHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------~~f~~~~wv~~s~~~~~ 220 (352)
.+++|.+...+.+.+.+..+. .+...++|+.|+||+++|..+........ ..++-..|+.-.....-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 468999999999999998876 48999999999999999999988763211 12223344432100000
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEec
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTS 293 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTT 293 (352)
..+-..-+...+...........++ +..+.+.+ .+++-++|+|+++... ..+.+...+..- .+..-|++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP-p~~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP-GNGTLILIAP 161 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC-CCCeEEEEEC
Confidence 0000111112211111111222222 22333333 3567799999997652 233333333222 2223444444
Q ss_pred CChHHHhhc-cCCceeecCCCCHHHHHHHHHHhhc
Q 047607 294 RDFEVCGQM-EAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 294 r~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
....+...+ +....+.+.+++.++..+.+.+...
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~ 196 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhc
Confidence 444443332 3346889999999999999998753
No 120
>PRK08116 hypothetical protein; Validated
Probab=97.93 E-value=1.5e-05 Score=71.73 Aligned_cols=103 Identities=23% Similarity=0.234 Sum_probs=59.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhC
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILS 255 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 255 (352)
..+.++|.+|+|||.||..+++... .....+++++ ...++..+....... ...+.. .+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~~----~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSS----GKEDEN----EIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcc----ccccHH----HHHHHhc
Confidence 4588999999999999999999983 2233456664 444555555554321 111122 2333344
Q ss_pred CCcEEEEEeCCC--Ccccccc--cccCCCCCCCCCcEEEEecCCh
Q 047607 256 DKKFMLLLDDIW--EPVDLAQ--VGLPIPSPRSTSSKVVFTSRDF 296 (352)
Q Consensus 256 ~kr~LlVlDdv~--~~~~~~~--l~~~~~~~~~~gs~IiiTTr~~ 296 (352)
+-. ||||||+. ...+|.. +...+.....++..+|+||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 333 89999994 3344432 2211111113466799999753
No 121
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.91 E-value=0.00012 Score=60.83 Aligned_cols=135 Identities=15% Similarity=0.181 Sum_probs=73.3
Q ss_pred cchHHHHHHHHHHhcCCcE-EEEEEecCCCcHHHHHHHHHHhhccCCCC-----------------CCEEEEEEeCCccC
Q 047607 158 GLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKFLVSPNH-----------------FDFVIWVVVSKDLQ 219 (352)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-----------------f~~~~wv~~s~~~~ 219 (352)
|.++..+.|.+.+..++.+ .+.++|+.|+||+++|..+.......... ..-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK-- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS--
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc--
Confidence 6677788888888877654 68999999999999999999877322111 122233322111
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEe
Q 047607 220 LEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFT 292 (352)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiT 292 (352)
......++.. .+.+.+ .++.=++|+|+++.. +....++..+..- ..++.+|++
T Consensus 79 ------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-p~~~~fiL~ 138 (162)
T PF13177_consen 79 ------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP-PENTYFILI 138 (162)
T ss_dssp ------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-TTTEEEEEE
T ss_pred ------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC-CCCEEEEEE
Confidence 0122333333 333333 235679999999874 3334443333322 567888888
Q ss_pred cCChH-HHhh-ccCCceeecCCCC
Q 047607 293 SRDFE-VCGQ-MEAHRSFKVECLA 314 (352)
Q Consensus 293 Tr~~~-v~~~-~~~~~~~~l~~L~ 314 (352)
|++.+ +... .+....+.+.+||
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 87654 3222 2334466777664
No 122
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.87 E-value=4.4e-05 Score=71.80 Aligned_cols=142 Identities=17% Similarity=0.105 Sum_probs=88.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
....+.|||..|.|||.|++.+.+.. ....+....+.+ +.......++..+.. .-...+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~----~se~f~~~~v~a~~~-----------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL----TSEDFTNDFVKALRD-----------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec----cHHHHHHHHHHHHHh-----------hhHHHHHHh
Confidence 37899999999999999999999998 344442223332 333444444444421 123445555
Q ss_pred hCCCcEEEEEeCCCCcc---ccc-ccccCCCCCCCCCcEEEEecCC---------hHHHhhccCCceeecCCCCHHHHHH
Q 047607 254 LSDKKFMLLLDDIWEPV---DLA-QVGLPIPSPRSTSSKVVFTSRD---------FEVCGQMEAHRSFKVECLAYEDAWE 320 (352)
Q Consensus 254 L~~kr~LlVlDdv~~~~---~~~-~l~~~~~~~~~~gs~IiiTTr~---------~~v~~~~~~~~~~~l~~L~~~e~~~ 320 (352)
. .-=++++||++-.. .|+ .+...|..-...|-.||+|++. +.+.++++..-++.+.+++.+....
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 5 33488999997532 222 1222221111234489999964 3345555666789999999999999
Q ss_pred HHHHhhccccccCCC
Q 047607 321 LFEEKVGREILLYIP 335 (352)
Q Consensus 321 Lf~~~~~~~~~~~~~ 335 (352)
++.+.+.......++
T Consensus 252 iL~kka~~~~~~i~~ 266 (408)
T COG0593 252 ILRKKAEDRGIEIPD 266 (408)
T ss_pred HHHHHHHhcCCCCCH
Confidence 999987655533433
No 123
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00073 Score=68.37 Aligned_cols=105 Identities=22% Similarity=0.328 Sum_probs=65.5
Q ss_pred CccccchHHHHHHHHHHhc-------C--CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVME-------D--TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQ 224 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 224 (352)
..++|.++.++.+.+.+.. . .......+||.|+|||.||+.+.... -+.-+..+-+++|.......
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHs-- 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHS-- 565 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHH--
Confidence 5689999999999888863 1 35678889999999999999999988 22224455555544322222
Q ss_pred HHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcE-EEEEeCCCCc
Q 047607 225 ECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKF-MLLLDDIWEP 269 (352)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~ 269 (352)
+..-+|. .+..-..+. --.|-+.++.++| +|+||++...
T Consensus 566 --VSrLIGa-PPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 566 --VSRLIGA-PPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred --HHHHhCC-CCCCceecc---ccchhHhhhcCCCeEEEechhhhc
Confidence 1222222 211111111 2334555667777 8889999763
No 124
>PRK08118 topology modulation protein; Reviewed
Probab=97.85 E-value=9.5e-06 Score=67.74 Aligned_cols=35 Identities=37% Similarity=0.694 Sum_probs=28.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEE
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIW 211 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 211 (352)
-|.|+|++|+||||||+.+++......-+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999998322356777776
No 125
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.83 E-value=0.00021 Score=62.47 Aligned_cols=150 Identities=15% Similarity=0.138 Sum_probs=85.9
Q ss_pred CCccccchHHHHHHHHHH----hcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCV----MEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
-+.++|.+...+.|++.. ......-+.+||..|+|||+|++.+.+.+. ... .--|.+++.
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~--~~G---LRlIev~k~----------- 89 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA--DQG---LRLIEVSKE----------- 89 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh--hcC---ceEEEECHH-----------
Confidence 356899999988887654 334677888999999999999999999883 111 112222221
Q ss_pred HHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc---ccccccccCCCCC--CCCC-cEEEEecCChHHH-hh
Q 047607 229 EKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP---VDLAQVGLPIPSP--RSTS-SKVVFTSRDFEVC-GQ 301 (352)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~~~~~--~~~g-s~IiiTTr~~~v~-~~ 301 (352)
.-.+...+...|+ -+..||+|.+||+.=. .....++..+..+ ..+. ..|..||....+. ..
T Consensus 90 ----------~L~~l~~l~~~l~--~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~ 157 (249)
T PF05673_consen 90 ----------DLGDLPELLDLLR--DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPES 157 (249)
T ss_pred ----------HhccHHHHHHHHh--cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchh
Confidence 1122233333333 1357899999998522 2344444333221 0233 3344444333321 11
Q ss_pred cc-----------C--------------CceeecCCCCHHHHHHHHHHhhcccc
Q 047607 302 ME-----------A--------------HRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 302 ~~-----------~--------------~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
+. . .-.+...+.+.++..++....+...+
T Consensus 158 ~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g 211 (249)
T PF05673_consen 158 FSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYG 211 (249)
T ss_pred hhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcC
Confidence 10 0 12356678888888888888885443
No 126
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.82 E-value=0.00045 Score=71.22 Aligned_cols=166 Identities=16% Similarity=0.087 Sum_probs=91.6
Q ss_pred ccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 155 SVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
++.|.+...+.|.+.+.- ...+-+.++|++|+|||+||+.+.+.. ..+| +.+..+
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f---i~v~~~------ 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF---IAVRGP------ 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehH------
Confidence 467888777777665431 134568899999999999999999987 3333 222211
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--------c------ccccccCCCCC-CCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--------D------LAQVGLPIPSP-RSTS 286 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~------~~~l~~~~~~~-~~~g 286 (352)
+++... ...+...+...+...-....++|+||+++... . ...+...+... ...+
T Consensus 522 ----~l~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 ----EILSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred ----HHhhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 111111 11111222222223334567999999996421 0 11121111110 0234
Q ss_pred cEEEEecCChHHHh--hc---cCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 287 SKVVFTSRDFEVCG--QM---EAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 287 s~IiiTTr~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
..||.||...+... .+ ..+..+.+...+.++-.++|+.+...-....+-++..+++.
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~ 652 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEM 652 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHH
Confidence 55666776554321 11 23567889999999999999876543332233446666654
No 127
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.79 E-value=0.00021 Score=73.57 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=88.6
Q ss_pred CCccccchHHHHHHHHHHhc-------C--CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME-------D--TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKI 223 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 223 (352)
...++|.++.++.+.+.+.. . ...++.++|++|+|||+||+.+.... . ...+.++++.......
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~---~~~~~~d~se~~~~~~- 525 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---G---VHLERFDMSEYMEKHT- 525 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---c---CCeEEEeCchhhhccc-
Confidence 34578999999988887753 1 23468899999999999999999877 2 2345555544222111
Q ss_pred HHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCC-CcEEEEEeCCCCc--ccccccccCCCCC----------CCCCcEEE
Q 047607 224 QECVAEKIGLFNESWSSKNVQEKAQEIFKILSD-KKFMLLLDDIWEP--VDLAQVGLPIPSP----------RSTSSKVV 290 (352)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~--~~~~~l~~~~~~~----------~~~gs~Ii 290 (352)
+...++.+.. ....+. ...+.+.++. ...+++||+++.. +.+..+...+..+ ....+.||
T Consensus 526 ---~~~lig~~~g-yvg~~~---~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii 598 (731)
T TIGR02639 526 ---VSRLIGAPPG-YVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILI 598 (731)
T ss_pred ---HHHHhcCCCC-Ccccch---hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEE
Confidence 1111222111 011111 1223333433 3469999999864 2222222222111 02345577
Q ss_pred EecCCh--HHH--------------------hhcc------CCceeecCCCCHHHHHHHHHHhh
Q 047607 291 FTSRDF--EVC--------------------GQME------AHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 291 iTTr~~--~v~--------------------~~~~------~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
+||... .+. .... -+.++.+++|+.++..+++....
T Consensus 599 ~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 599 MTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred ECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 777431 111 0011 13577899999999888887765
No 128
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.79 E-value=0.00016 Score=67.24 Aligned_cols=104 Identities=21% Similarity=0.184 Sum_probs=65.9
Q ss_pred HHHHHHHHhc-CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCE-EEEEEeCC-ccCHHHHHHHHHHHcCCCCCCCC
Q 047607 163 FERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDF-VIWVVVSK-DLQLEKIQECVAEKIGLFNESWS 239 (352)
Q Consensus 163 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~ 239 (352)
..++++.+.. ..-.-+.|+|.+|+|||||++.+.+... ..+.+. ++|+-+.+ ...+.++...+...+........
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3456777665 2345679999999999999999998773 234444 46766655 45788888888887654321101
Q ss_pred Cc---CHHHHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 240 SK---NVQEKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 240 ~~---~~~~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
.. ..-.....+.+++ ++++.+||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 1111222223333 57999999999863
No 129
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.78 E-value=0.0002 Score=73.82 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=81.7
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
+++.|.++.+++|.+.+.- ...+.+.++|++|+|||+||+.+++.. ...| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~----- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP----- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH-----
Confidence 3478999998888776631 134678899999999999999999877 3322 223221
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc-------------ccccccCCCCCCCCCc
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD-------------LAQVGLPIPSPRSTSS 287 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~gs 287 (352)
.+ .... .......+...+.........+|+|||++.... ...+...+......+.
T Consensus 247 -~i----~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 -EI----MSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -HH----hccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 11 1110 111112222333334455678999999864210 1112211111102233
Q ss_pred EEEE-ecCChH-HHhhc----cCCceeecCCCCHHHHHHHHHHhh
Q 047607 288 KVVF-TSRDFE-VCGQM----EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 288 ~Iii-TTr~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
.++| ||.... +-..+ ..+..+.+...+.++-.+++....
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~ 359 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHT 359 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHh
Confidence 3444 554332 21111 123467788888888888888554
No 130
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00094 Score=61.05 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=96.7
Q ss_pred cccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHH
Q 047607 156 VVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEK 222 (352)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 222 (352)
+=|-++.+++|.+...- +.++=|.++|+||.|||-||+.+.++. ...|- .+...
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtFI-----rvvgS----- 219 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATFI-----RVVGS----- 219 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceEE-----EeccH-----
Confidence 45788888888877531 256789999999999999999999988 45443 22211
Q ss_pred HHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhC-CCcEEEEEeCCCCcc----------c------cccc---ccCCCCC
Q 047607 223 IQECVAEKIGLFNESWSSKNVQEKAQEIFKILS-DKKFMLLLDDIWEPV----------D------LAQV---GLPIPSP 282 (352)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~----------~------~~~l---~~~~~~~ 282 (352)
++.+..-+.+ ..+...+.+.-+ +..++|.+|+++.-. + +-++ ...|..
T Consensus 220 ---ElVqKYiGEG--------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~- 287 (406)
T COG1222 220 ---ELVQKYIGEG--------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP- 287 (406)
T ss_pred ---HHHHHHhccc--------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC-
Confidence 2222221111 123344444443 467899999997410 0 1111 233333
Q ss_pred CCCCcEEEEecCChHHHhh--c---cCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 283 RSTSSKVVFTSRDFEVCGQ--M---EAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 283 ~~~gs~IiiTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
...-|||..|...++... + .-+..+++..-+.+.-.++|+-+...=....+-+++.+++.
T Consensus 288 -~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~ 352 (406)
T COG1222 288 -RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARL 352 (406)
T ss_pred -CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHh
Confidence 356799998876554211 1 23557788866666667788777654333344556666653
No 131
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.76 E-value=0.0004 Score=72.68 Aligned_cols=61 Identities=26% Similarity=0.366 Sum_probs=45.5
Q ss_pred CCccccchHHHHHHHHHHhcC---------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC
Q 047607 153 PTSVVGLQSTFERVWSCVMED---------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 216 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 216 (352)
...++|.+..++.+...+... ...++.++|++|+|||++|+.+..... ......+.++++.
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~---~~~~~~i~~d~s~ 633 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF---DDEDAMVRIDMSE 633 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc---CCCCcEEEEechh
Confidence 356899999999998888641 245788999999999999999998772 2223445555554
No 132
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.76 E-value=0.00022 Score=74.23 Aligned_cols=45 Identities=16% Similarity=0.350 Sum_probs=40.0
Q ss_pred cccchHHHHHHHHHHhc---CCcEEEEEEecCCCcHHHHHHHHHHhhc
Q 047607 156 VVGLQSTFERVWSCVME---DTIGIVGLYGMGGVGKTTLLTQINNKFL 200 (352)
Q Consensus 156 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (352)
++||+.+++.|...+.+ ....++.+.|.+|||||+|+++|.....
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~ 49 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPIT 49 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHh
Confidence 68999999999988864 4567999999999999999999999883
No 133
>PRK10536 hypothetical protein; Provisional
Probab=97.74 E-value=0.00027 Score=62.45 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=41.1
Q ss_pred ccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEE
Q 047607 155 SVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIW 211 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 211 (352)
.+.+++.....++.+|.+. .++.+.|++|+|||+||..+..+. -....|..++-
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI 109 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIV 109 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEE
Confidence 3567888888899988764 499999999999999999998864 11334554443
No 134
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.73 E-value=0.00013 Score=72.92 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=39.4
Q ss_pred CccccchHHHHHHHHHHhcC-----CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMED-----TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+++|.++.++++..++... ...++.|+|++|+||||+++.+....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999998753 34579999999999999999999876
No 135
>PRK12377 putative replication protein; Provisional
Probab=97.72 E-value=0.00018 Score=63.80 Aligned_cols=102 Identities=21% Similarity=0.165 Sum_probs=56.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
+...+.++|++|+|||+||..+.+... ...-.++++++ .+++..+-..... ...... +.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~~----~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN------GQSGEK----FLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc------cchHHH----HHHH
Confidence 346789999999999999999999983 22333566544 3444444443321 111111 2222
Q ss_pred hCCCcEEEEEeCCCC--ccccc--ccccCCCCCCCCCcEEEEecCC
Q 047607 254 LSDKKFMLLLDDIWE--PVDLA--QVGLPIPSPRSTSSKVVFTSRD 295 (352)
Q Consensus 254 L~~kr~LlVlDdv~~--~~~~~--~l~~~~~~~~~~gs~IiiTTr~ 295 (352)
+ .+--||||||+.. ...|. .+...+...-.+.-.+||||..
T Consensus 161 l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 161 L-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred h-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2 3556999999943 23343 2222222210223457778764
No 136
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00045 Score=64.22 Aligned_cols=162 Identities=7% Similarity=0.003 Sum_probs=86.7
Q ss_pred cccc-chHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 155 SVVG-LQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 155 ~~vG-r~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.++| .+..++.|...+..++ .+...++|+.|+||||+|+.+.+.... ....... .+........+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 4567 7777888888887765 456799999999999999999887621 1111100 0011111111111000
Q ss_pred CCC----CCCCCcCHHHHHHHHHHH----hCCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEecCCh-HHHhh
Q 047607 233 LFN----ESWSSKNVQEKAQEIFKI----LSDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRDF-EVCGQ 301 (352)
Q Consensus 233 ~~~----~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~~-~v~~~ 301 (352)
+.- ........++..+.+... ..+.+-++|+|+++... ..+.+...+..- ..++.+|++|.+. .+...
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-p~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP-SGGTTAILLTENKHQILPT 156 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC-CCCceEEEEeCChHhCcHH
Confidence 000 000112222222222111 23455689999987642 233333333332 4566666666553 33332
Q ss_pred c-cCCceeecCCCCHHHHHHHHHHh
Q 047607 302 M-EAHRSFKVECLAYEDAWELFEEK 325 (352)
Q Consensus 302 ~-~~~~~~~l~~L~~~e~~~Lf~~~ 325 (352)
+ +....+++.+++.++..+.+.+.
T Consensus 157 IrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 157 ILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2 33467899999999988888654
No 137
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00063 Score=65.03 Aligned_cols=126 Identities=25% Similarity=0.260 Sum_probs=81.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHH--
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIF-- 251 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-- 251 (352)
....+.+.|++|+|||+||..+.... .|+.+--++ ++++ ...+.......+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiS------pe~m---------------iG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIIS------PEDM---------------IGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeC------hHHc---------------cCccHHHHHHHHHHH
Confidence 45678899999999999999997754 566433221 2221 1222222233333
Q ss_pred --HHhCCCcEEEEEeCCCCcccccccccCCCCC------------CCCCcE--EEEecCChHHHhhccC----CceeecC
Q 047607 252 --KILSDKKFMLLLDDIWEPVDLAQVGLPIPSP------------RSTSSK--VVFTSRDFEVCGQMEA----HRSFKVE 311 (352)
Q Consensus 252 --~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~------------~~~gs~--IiiTTr~~~v~~~~~~----~~~~~l~ 311 (352)
...+..-..||+||+...-+|..+++.|.+. ..+|-| |+-||....+...|+- +..|+++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 3445566899999999988888877654321 133444 5557778888877752 4578888
Q ss_pred CCCH-HHHHHHHHHh
Q 047607 312 CLAY-EDAWELFEEK 325 (352)
Q Consensus 312 ~L~~-~e~~~Lf~~~ 325 (352)
.++. ++..+.++..
T Consensus 671 nl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEEL 685 (744)
T ss_pred ccCchHHHHHHHHHc
Confidence 8887 7777777664
No 138
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.69 E-value=0.00041 Score=67.58 Aligned_cols=166 Identities=15% Similarity=0.097 Sum_probs=88.8
Q ss_pred CccccchHHHHHHHHHHh---c-------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHH
Q 047607 154 TSVVGLQSTFERVWSCVM---E-------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKI 223 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 223 (352)
+++-|.+...+.+..... . ...+-+.++|++|+|||.+|+.+.+.. ...| +-++++ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------K- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------H-
Confidence 456777766655544221 1 235678999999999999999999987 2332 112211 1
Q ss_pred HHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc----cc----------cccccCCCCCCCCCcEE
Q 047607 224 QECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV----DL----------AQVGLPIPSPRSTSSKV 289 (352)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----~~----------~~l~~~~~~~~~~gs~I 289 (352)
+.... ...+...+.+.+...-...+++|.+|+++... .. ..+...+... ..+..|
T Consensus 295 ---l~~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-~~~V~v 363 (489)
T CHL00195 295 ---LFGGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-KSPVFV 363 (489)
T ss_pred ---hcccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-CCceEE
Confidence 11110 11112222222222223578999999997421 00 0111111222 334456
Q ss_pred EEecCChHH-----HhhccCCceeecCCCCHHHHHHHHHHhhccccc--cCCCCcHHHHhh
Q 047607 290 VFTSRDFEV-----CGQMEAHRSFKVECLAYEDAWELFEEKVGREIL--LYIPLETNIHQA 343 (352)
Q Consensus 290 iiTTr~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~~~l~~i~~~ 343 (352)
|.||.+..- .+.-..+..+.++.-+.++-.++|..+...... ..+.++..+++.
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~ 424 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKL 424 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhh
Confidence 667765432 111123567889999999999999887744221 123345555543
No 139
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.67 E-value=0.00054 Score=71.56 Aligned_cols=61 Identities=26% Similarity=0.379 Sum_probs=43.7
Q ss_pred CCccccchHHHHHHHHHHhc--------C-CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC
Q 047607 153 PTSVVGLQSTFERVWSCVME--------D-TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 216 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~--------~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 216 (352)
...++|.+..++.+...+.. + ...++.++|++|+|||+||+.+.+... ......+.++++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~---~~~~~~i~id~se 636 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDDAMVRIDMSE 636 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh---cCCCcEEEEEhHH
Confidence 34689999999888877752 1 125788999999999999999998762 2222345555543
No 140
>PRK08181 transposase; Validated
Probab=97.66 E-value=5.8e-05 Score=67.76 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=56.5
Q ss_pred HHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHH
Q 047607 168 SCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKA 247 (352)
Q Consensus 168 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 247 (352)
+|+. +...+.++|++|+|||.||..+.+... .. .-.++|++ ..+++..+.... .........
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~--~~-g~~v~f~~------~~~L~~~l~~a~-------~~~~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI--EN-GWRVLFTR------TTDLVQKLQVAR-------RELQLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH--Hc-CCceeeee------HHHHHHHHHHHH-------hCCcHHHHH
Confidence 4543 335699999999999999999998772 22 22345553 344555554332 111222222
Q ss_pred HHHHHHhCCCcEEEEEeCCCCc--ccc-c-ccccCCCCCCCCCcEEEEecCC
Q 047607 248 QEIFKILSDKKFMLLLDDIWEP--VDL-A-QVGLPIPSPRSTSSKVVFTSRD 295 (352)
Q Consensus 248 ~~l~~~L~~kr~LlVlDdv~~~--~~~-~-~l~~~~~~~~~~gs~IiiTTr~ 295 (352)
.. + .+--||||||+... ..+ . .+...+... ..+..+||||..
T Consensus 163 ~~----l-~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R-~~~~s~IiTSN~ 208 (269)
T PRK08181 163 AK----L-DKFDLLILDDLAYVTKDQAETSVLFELISAR-YERRSILITANQ 208 (269)
T ss_pred HH----H-hcCCEEEEeccccccCCHHHHHHHHHHHHHH-HhCCCEEEEcCC
Confidence 22 2 23449999999643 122 1 122222211 122468888875
No 141
>PRK07261 topology modulation protein; Provisional
Probab=97.65 E-value=0.00015 Score=60.76 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=25.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEE
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIW 211 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 211 (352)
.|.|+|++|+||||||+.+........-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48899999999999999998776211234555555
No 142
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.00022 Score=69.10 Aligned_cols=178 Identities=13% Similarity=0.134 Sum_probs=102.9
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
++++|.+.....|.+.+..++ .......|+.|+||||+|+.+..-...... ....+++.....+.|-..-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~--------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG--------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC--------CCCCcchhhhhhHhhhcCCc
Confidence 467999999999999998775 456788999999999999999987732221 11112222222233332200
Q ss_pred CCC---CCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCC--cccccccccCCCCCCCCCcE-EEEecCChHHHh-
Q 047607 233 LFN---ESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWE--PVDLAQVGLPIPSPRSTSSK-VVFTSRDFEVCG- 300 (352)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~-IiiTTr~~~v~~- 300 (352)
... +.-+...+++. ..|.+.. +++-=++++|+|+- ...|..+...+..- ..+.. |+.||....+..
T Consensus 88 ~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-P~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 88 IDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-PSHVKFILATTEPQKIPNT 165 (515)
T ss_pred ccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC-ccCeEEEEecCCcCcCchh
Confidence 000 00012222322 2333322 33445889999974 35565554444332 23344 555665554432
Q ss_pred hccCCceeecCCCCHHHHHHHHHHhhccccccCCC-CcHHHH
Q 047607 301 QMEAHRSFKVECLAYEDAWELFEEKVGREILLYIP-LETNIH 341 (352)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~-~l~~i~ 341 (352)
.++....|.++.++.++-...+...+..++...++ .|.-|+
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia 207 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIA 207 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHH
Confidence 23445688999999999888888887665533333 244444
No 143
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.62 E-value=0.00082 Score=60.41 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHH
Q 047607 162 TFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQ 224 (352)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 224 (352)
.++++..++..+ ..+.+.|++|+|||+||+.+.... .. ..+.++++...+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 344555555443 456689999999999999998754 22 24556666655555443
No 144
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00058 Score=61.52 Aligned_cols=139 Identities=16% Similarity=0.200 Sum_probs=79.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccC--CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVS--PNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFK 252 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (352)
.++|.++||||.|||+|.+.++... .+ ...|....-+.++.. .++..= ++ ....-+..+.+.|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinsh----sLFSKW---Fs-----ESgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSH----SLFSKW---FS-----ESGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehh----HHHHHH---Hh-----hhhhHHHHHHHHHHH
Confidence 5899999999999999999999988 43 334443333333221 111111 11 134556677788888
Q ss_pred HhCCCc--EEEEEeCCCCccc-----------------ccccccCCCCCCCCCcEEEEecCCh----HHHhhccCCceee
Q 047607 253 ILSDKK--FMLLLDDIWEPVD-----------------LAQVGLPIPSPRSTSSKVVFTSRDF----EVCGQMEAHRSFK 309 (352)
Q Consensus 253 ~L~~kr--~LlVlDdv~~~~~-----------------~~~l~~~~~~~~~~gs~IiiTTr~~----~v~~~~~~~~~~~ 309 (352)
.+.++. +++.+|+|.+... ...+...+..-......+|+||.+- ++|-.-.++-...
T Consensus 244 Lv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~y 323 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFY 323 (423)
T ss_pred HHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheee
Confidence 887765 4556899875210 0111111111002334566666653 2332223444667
Q ss_pred cCCCCHHHHHHHHHHhh
Q 047607 310 VECLAYEDAWELFEEKV 326 (352)
Q Consensus 310 l~~L~~~e~~~Lf~~~~ 326 (352)
+++-+.+.-.++++...
T Consensus 324 VG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 324 VGPPTAEAIYEILKSCI 340 (423)
T ss_pred cCCccHHHHHHHHHHHH
Confidence 88888888888877654
No 145
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.59 E-value=0.00018 Score=75.00 Aligned_cols=106 Identities=20% Similarity=0.280 Sum_probs=61.1
Q ss_pred CCccccchHHHHHHHHHHhcC---------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVMED---------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKI 223 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 223 (352)
...++|.++.++.+...+... ....+.++|++|+|||+||+.+.+... ..-...+-++.+.......+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~---~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF---GSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc---CCccceEEEEchhccccccH
Confidence 356899999999998877521 134677999999999999999998772 22233444454443221111
Q ss_pred HHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCc-EEEEEeCCCCc
Q 047607 224 QECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKK-FMLLLDDIWEP 269 (352)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVlDdv~~~ 269 (352)
..-++.+. .....+. ...|.+.++.++ .+++||+++..
T Consensus 585 ----~~l~g~~~-gyvg~~~---~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 ----SKLIGSPP-GYVGYNE---GGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred ----HHhcCCCC-cccCcCc---cchHHHHHHhCCCeEEEECChhhC
Confidence 11122111 1011111 112344454454 58899999764
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.59 E-value=0.00015 Score=75.36 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=38.8
Q ss_pred CCccccchHHHHHHHHHHhc-------C--CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 153 PTSVVGLQSTFERVWSCVME-------D--TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...++|.+..++.+.+.+.. . ...++.++|++|+|||.||+.+....
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999888742 1 24578999999999999999998877
No 147
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.57 E-value=0.00043 Score=60.66 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=54.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH-cC---CCCCCCCCcCH---HHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK-IG---LFNESWSSKNV---QEK 246 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~---~~~~~~~~~~~---~~~ 246 (352)
.-.++.|+|++|+|||+++.++..... ..-..++|++.. .++...+. ++... +. .........+. .+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 457999999999999999999988772 334678899887 55554443 23322 00 00000011222 223
Q ss_pred HHHHHHHhCCCcEEEEEeCCC
Q 047607 247 AQEIFKILSDKKFMLLLDDIW 267 (352)
Q Consensus 247 ~~~l~~~L~~kr~LlVlDdv~ 267 (352)
+..+...++.+--++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 344444454666799999984
No 148
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.56 E-value=0.00011 Score=68.03 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=40.6
Q ss_pred ccccchHHHHHHHHHHhc------CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 155 SVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+++|.++.++++++++.. ...+++.++|++|+||||||..+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999864 246899999999999999999999988
No 149
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0011 Score=64.40 Aligned_cols=149 Identities=14% Similarity=0.075 Sum_probs=89.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
.+.-|.+||++|+|||-||+.+.|.. ..+|- ++-.+ ++++.- ...+.....+.+++.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NFi-----sVKGP--------ELlNkY-------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANFI-----SVKGP--------ELLNKY-------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCceE-----eecCH--------HHHHHH-------hhhHHHHHHHHHHHh
Confidence 45678899999999999999999988 55653 22221 122221 112222222333333
Q ss_pred hCCCcEEEEEeCCCCc-------cc------ccccccCCCCC-CCCCcEEEEecCChHHHh--hcc---CCceeecCCCC
Q 047607 254 LSDKKFMLLLDDIWEP-------VD------LAQVGLPIPSP-RSTSSKVVFTSRDFEVCG--QME---AHRSFKVECLA 314 (352)
Q Consensus 254 L~~kr~LlVlDdv~~~-------~~------~~~l~~~~~~~-~~~gs~IiiTTr~~~v~~--~~~---~~~~~~l~~L~ 314 (352)
=..-.|+|.||+++.. .. ..+++.-+... ...|.-||-.|..+++.. .+. -++..-+..-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 3457899999999752 11 12222222111 146777777776655421 112 35677888889
Q ss_pred HHHHHHHHHHhhccc--cccCCCCcHHHHhhhh
Q 047607 315 YEDAWELFEEKVGRE--ILLYIPLETNIHQAEV 345 (352)
Q Consensus 315 ~~e~~~Lf~~~~~~~--~~~~~~~l~~i~~~iv 345 (352)
.+|-.++++...-.. -...+-+|++|++.--
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~ 713 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARNTK 713 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhccc
Confidence 999999999888632 2334456888887543
No 150
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.53 E-value=0.0048 Score=57.14 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=28.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEe
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV 214 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 214 (352)
...+.++|++|+|||.||..+++... ...+ .++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g~-~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRGK-SVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCCC-eEEEEEH
Confidence 37799999999999999999999883 2233 4566653
No 151
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.53 E-value=0.002 Score=60.76 Aligned_cols=159 Identities=13% Similarity=0.214 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHH-HHHHHhhccCCCCCCEEEEEEeCCc---cCHHHHHHHHHHHcCCC
Q 047607 159 LQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLL-TQINNKFLVSPNHFDFVIWVVVSKD---LQLEKIQECVAEKIGLF 234 (352)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l~~~ 234 (352)
|.+.+++|..||.+..-..|.|.||.|+||+.|+ .++..+. +.+..++|.+- .+-..++..++.++|..
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999988899999999999999999 6666654 12666665442 23445555555555432
Q ss_pred C-----------------------CCCCCcCHHHHH-------HHHHH-------------------Hh---CCCcEEEE
Q 047607 235 N-----------------------ESWSSKNVQEKA-------QEIFK-------------------IL---SDKKFMLL 262 (352)
Q Consensus 235 ~-----------------------~~~~~~~~~~~~-------~~l~~-------------------~L---~~kr~LlV 262 (352)
+ .........++. ..|++ +| ...+-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 011111111111 11221 01 01267999
Q ss_pred EeCCCCcc-----------cccccccCCCCCCCCCcEEEEecCChHHHh----hcc--CCceeecCCCCHHHHHHHHHHh
Q 047607 263 LDDIWEPV-----------DLAQVGLPIPSPRSTSSKVVFTSRDFEVCG----QME--AHRSFKVECLAYEDAWELFEEK 325 (352)
Q Consensus 263 lDdv~~~~-----------~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~----~~~--~~~~~~l~~L~~~e~~~Lf~~~ 325 (352)
+|++.... +|... +-. ++=.+||++|-+..... .+. ..+.+.|...+.+-|..+...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---Lv~--~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---LVQ--NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---HHh--cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 99996542 23322 222 35568888887755433 332 2357799999999999999998
Q ss_pred hccc
Q 047607 326 VGRE 329 (352)
Q Consensus 326 ~~~~ 329 (352)
....
T Consensus 229 L~~~ 232 (431)
T PF10443_consen 229 LDED 232 (431)
T ss_pred hccc
Confidence 8553
No 152
>PRK06526 transposase; Provisional
Probab=97.51 E-value=0.0001 Score=65.78 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+...+.++|++|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998876
No 153
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.51 E-value=0.00031 Score=60.38 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=41.9
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++||-++.++++.-...+.+.+-+.|.||||+||||-+..+.+..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 4589999999999888888899999999999999999999998887
No 154
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.51 E-value=9.2e-05 Score=58.01 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 155
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.50 E-value=0.0023 Score=63.33 Aligned_cols=187 Identities=14% Similarity=0.085 Sum_probs=118.4
Q ss_pred CCccccchHHHHHHHHHHhc---C--CcEEEEEEecCCCcHHHHHHHHHHhhccC-----CCCCCEEEEEEeCCccCHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME---D--TIGIVGLYGMGGVGKTTLLTQINNKFLVS-----PNHFDFVIWVVVSKDLQLEK 222 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~---~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-----~~~f~~~~wv~~s~~~~~~~ 222 (352)
+..+-+|+.+..+|-..+.. + .-+.+=|.|-+|+|||..+..|.+.++.. -..|+ .+.|+.-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 45678999999998887753 2 33478899999999999999999976321 12343 45566666667899
Q ss_pred HHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhC-----CCcEEEEEeCCCCccc-ccccccCCCCC-CCCCcEEEEecCC
Q 047607 223 IQECVAEKIGLFNESWSSKNVQEKAQEIFKILS-----DKKFMLLLDDIWEPVD-LAQVGLPIPSP-RSTSSKVVFTSRD 295 (352)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~~-~~~l~~~~~~~-~~~gs~IiiTTr~ 295 (352)
+...|..++.+. ........+.|..++. .+.+++++|+++.... =+++.-.|-++ ..++||++|.+=.
T Consensus 474 ~Y~~I~~~lsg~-----~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 474 IYEKIWEALSGE-----RVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHhcccC-----cccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 999999998653 2333444455555543 3568899999865311 00111111111 1466776654421
Q ss_pred --hH---------HHhhccCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhhhhc
Q 047607 296 --FE---------VCGQMEAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQAEVI 346 (352)
Q Consensus 296 --~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~iv~ 346 (352)
.+ ++..++ -..+..+|.+.++-.++...+..+...-.+...+-+++.++.
T Consensus 549 NTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAa 609 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAA 609 (767)
T ss_pred ccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHh
Confidence 11 222222 235678999999999998888766543344557777787776
No 156
>PF14516 AAA_35: AAA-like domain
Probab=97.47 E-value=0.0068 Score=56.40 Aligned_cols=169 Identities=12% Similarity=0.141 Sum_probs=95.8
Q ss_pred CCccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc-----cCHHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-----LQLEKIQECV 227 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~i 227 (352)
.+..|.|...-+++.+.|.+. -..+.|.|+..+|||||...+.+... +..+. ++++++..- .+....++.+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~--~~~~~-~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQ--QQGYR-CVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHH--HCCCE-EEEEEeecCCCcccCCHHHHHHHH
Confidence 455789987777777777653 46899999999999999999999883 23444 557776542 2455555554
Q ss_pred H----HHcCCCCCC---C--CCcCHHHHHHHHHHHh---CCCcEEEEEeCCCCccc--------------ccccccCCCC
Q 047607 228 A----EKIGLFNES---W--SSKNVQEKAQEIFKIL---SDKKFMLLLDDIWEPVD--------------LAQVGLPIPS 281 (352)
Q Consensus 228 ~----~~l~~~~~~---~--~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~--------------~~~l~~~~~~ 281 (352)
+ .+++..... + ...+.......+.+++ .+++.+|+||+++.... |..-....+.
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4 444433210 0 0112223333444432 26899999999986421 1111111111
Q ss_pred CCCCCcEEEEecCChHHHhh-----ccCCceeecCCCCHHHHHHHHHHhh
Q 047607 282 PRSTSSKVVFTSRDFEVCGQ-----MEAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 282 ~~~~gs~IiiTTr~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
. ..=+-|++.+........ .+....+.|++++.+|...|+.+.-
T Consensus 166 ~-~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 166 W-QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred c-ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 1 011112222211111111 1234578999999999999988764
No 157
>PRK06921 hypothetical protein; Provisional
Probab=97.46 E-value=0.00011 Score=66.11 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=29.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEe
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV 214 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 214 (352)
....+.++|.+|+|||.|+..+.+... ......++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 457799999999999999999999872 221344566653
No 158
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.46 E-value=0.0015 Score=57.18 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=57.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCC------CEEEEEEeCCccCHHHHHHHHHHHcCCCCC-------CCCC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF------DFVIWVVVSKDLQLEKIQECVAEKIGLFNE-------SWSS 240 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~ 240 (352)
.-.++.|+|++|+|||+|+.++.... .... ..++|+.....++...+. .+....+...+ -...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 45799999999999999999998765 2222 567899988777665543 33333322110 0012
Q ss_pred cCHHHHHHHHHHHhC---C-CcEEEEEeCCCC
Q 047607 241 KNVQEKAQEIFKILS---D-KKFMLLLDDIWE 268 (352)
Q Consensus 241 ~~~~~~~~~l~~~L~---~-kr~LlVlDdv~~ 268 (352)
.+.++....+...+. . +--|+|+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 344555555555442 3 445999999854
No 159
>PRK04296 thymidine kinase; Provisional
Probab=97.45 E-value=0.00021 Score=61.04 Aligned_cols=112 Identities=18% Similarity=0.088 Sum_probs=62.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhC
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILS 255 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 255 (352)
.++.|+|++|.||||++..+..+.. .+...++.+.- .++.......+++.++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4788999999999999999998873 22233333321 112122233455555532221112334445555555 23
Q ss_pred CCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCCh
Q 047607 256 DKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRDF 296 (352)
Q Consensus 256 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~~ 296 (352)
++.-+||+|++.-. ++..++...+. ..|..||+|.++.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~---~~g~~vi~tgl~~ 116 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD---DLGIPVICYGLDT 116 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH---HcCCeEEEEecCc
Confidence 34458999999542 22222322222 4678999999883
No 160
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.45 E-value=0.00054 Score=59.28 Aligned_cols=90 Identities=17% Similarity=0.195 Sum_probs=55.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHc-CCCCC---CCCCcC---HHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKI-GLFNE---SWSSKN---VQEK 246 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-~~~~~---~~~~~~---~~~~ 246 (352)
.-.++.|+|++|+|||+++.++.... ......++|++... ++...+.+ ++... ..... .....+ ....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 45899999999999999999998877 23356789999876 55555443 33321 00000 001112 2233
Q ss_pred HHHHHHHhCC-CcEEEEEeCCCC
Q 047607 247 AQEIFKILSD-KKFMLLLDDIWE 268 (352)
Q Consensus 247 ~~~l~~~L~~-kr~LlVlDdv~~ 268 (352)
...+.+.+.. +.-+||+|.+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHH
Confidence 5555555544 456999999853
No 161
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.001 Score=61.55 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHHhc-CCcE-EEEEEecCCCcHHHHHHHHHHhh
Q 047607 155 SVVGLQSTFERVWSCVME-DTIG-IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-~~~~-vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++|.+....++..+... .+.+ .+.++|++|+||||+|..+.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 357778888888888874 3344 59999999999999999999987
No 162
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0076 Score=58.77 Aligned_cols=25 Identities=36% Similarity=0.704 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+++|+|++|+||||++..+....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999988765
No 163
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=97.39 E-value=0.00026 Score=63.12 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=77.2
Q ss_pred chhhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 047607 10 SCDGTISQCLDCSVRQAGYICYLRDNLKDLRRESQKLIEERNDVRIRVIVAEQQQMKRLERVQGWFSRVQDVLYEVDRLT 89 (352)
Q Consensus 10 ~~~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~a~~~ed~l 89 (352)
.++.++++|.++..+....+.-++.+++.++.+|+.|+.||..+ +++.+.+.+. ...+..++...||++|.++
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYVV 369 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYVV 369 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeeee
Confidence 46889999999988888888889999999999999999999886 5665545434 9999999999999999999
Q ss_pred hhhhHHhhhhhhCCCccCcchhhchhHHHHHHHHHHH
Q 047607 90 LESNREDAKLCLGGLCTKICKSNYKFGRKVFRTLREV 126 (352)
Q Consensus 90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i 126 (352)
|.+..... .-|| ..+.-..+..+|+.+.+++
T Consensus 370 DaCi~k~~----P~Wc--l~~WL~dIieei~~ik~~i 400 (402)
T PF12061_consen 370 DACISKSV----PHWC--LERWLLDIIEEITCIKAKI 400 (402)
T ss_pred ehhhcCCC----cHHH--HHHHHHHHHHHHHHHHHHh
Confidence 98743321 1122 1122234555665555544
No 164
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.39 E-value=0.0005 Score=63.15 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=57.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES---WSSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (352)
.-+++-|+|++|+||||||.++..... ..-..++|++....++.. .+.+++...+. ......++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457999999999999999999888772 334567899877765553 34555432211 1233455566666
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 047607 251 FKILS-DKKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~-~kr~LlVlDdv~~ 268 (352)
...++ +.--+||+|.+-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 55554 3556999999853
No 165
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.02 Score=54.16 Aligned_cols=133 Identities=21% Similarity=0.234 Sum_probs=72.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
.+-..++||||.||||+..++++.+ .|+..- ...+.- .+. ..|++.|
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v-----------------------~~n----~dLr~LL 281 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEV-----------------------KLD----SDLRHLL 281 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeeccc-----------------------cCc----HHHHHHH
Confidence 3668899999999999999999987 233211 111111 001 1133333
Q ss_pred --CCCcEEEEEeCCCCccc-----------ccc----c----ccCCCCC----CCCCcEEEEecCChHHH--hhcc---C
Q 047607 255 --SDKKFMLLLDDIWEPVD-----------LAQ----V----GLPIPSP----RSTSSKVVFTSRDFEVC--GQME---A 304 (352)
Q Consensus 255 --~~kr~LlVlDdv~~~~~-----------~~~----l----~~~~~~~----~~~gs~IiiTTr~~~v~--~~~~---~ 304 (352)
...+.+||+.|++..-+ ... + ...+.++ ++..--||+||...+-. ..+. .
T Consensus 282 ~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRm 361 (457)
T KOG0743|consen 282 LATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRM 361 (457)
T ss_pred HhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcc
Confidence 23567888888875311 110 0 0112222 11122356677765421 1122 2
Q ss_pred CceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHh
Q 047607 305 HRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQ 342 (352)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~ 342 (352)
+-.+.+.-=+.+.-..||.++.+.+. ..+-..+|.+
T Consensus 362 DmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~ 397 (457)
T KOG0743|consen 362 DMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIER 397 (457)
T ss_pred eeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHH
Confidence 34568888888888999999887644 2333444444
No 166
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.39 E-value=0.00074 Score=59.51 Aligned_cols=93 Identities=23% Similarity=0.279 Sum_probs=57.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCC----CCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC-------CCCcC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNH----FDFVIWVVVSKDLQLEKIQECVAEKIGLFNES-------WSSKN 242 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 242 (352)
.-.++.|+|++|+|||+|+.+++.... .... ...++|++....++..++. +++...+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~-~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQ-LPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHee-CccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 457999999999999999999986541 1111 3579999988877665543 344443321110 01122
Q ss_pred ---HHHHHHHHHHHhC-C-CcEEEEEeCCCC
Q 047607 243 ---VQEKAQEIFKILS-D-KKFMLLLDDIWE 268 (352)
Q Consensus 243 ---~~~~~~~l~~~L~-~-kr~LlVlDdv~~ 268 (352)
.......+...+. . +--|||+|.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 2333445555553 3 567999999854
No 167
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00029 Score=62.34 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=38.5
Q ss_pred CccccchHHHHHHHHHHh-----cCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVM-----EDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|+|.++..++|.=.+. +...--+.++|+||.||||||..+.+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 468999998888765553 2356789999999999999999999988
No 168
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0033 Score=61.80 Aligned_cols=146 Identities=18% Similarity=0.101 Sum_probs=81.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
..+-|.++|+||+|||++|+.+.+.. +.+|-.+ +.+ +++... ...+...+.+.+++.
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~---~~nFlsv-----kgp--------EL~sk~-------vGeSEr~ir~iF~kA 523 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEA---GMNFLSV-----KGP--------ELFSKY-------VGESERAIREVFRKA 523 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhh---cCCeeec-----cCH--------HHHHHh-------cCchHHHHHHHHHHH
Confidence 56889999999999999999999988 5555322 111 111111 122222222333333
Q ss_pred hCCCcEEEEEeCCCCccc-------------ccccccCCCCCCCCCcEE--EEec-CChHH-Hhhcc---CCceeecCCC
Q 047607 254 LSDKKFMLLLDDIWEPVD-------------LAQVGLPIPSPRSTSSKV--VFTS-RDFEV-CGQME---AHRSFKVECL 313 (352)
Q Consensus 254 L~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~gs~I--iiTT-r~~~v-~~~~~---~~~~~~l~~L 313 (352)
=+--.++|.||+++...- +..+..-+... .....| |-.| |...+ ...+. .+..+.+++-
T Consensus 524 R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~-e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplP 602 (693)
T KOG0730|consen 524 RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL-EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLP 602 (693)
T ss_pred hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc-cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCc
Confidence 334568888998875210 11221222211 222233 3333 33333 12223 4567788888
Q ss_pred CHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 314 AYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 314 ~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
+.+--.++|+.++-.-....+-+|++|+++
T Consensus 603 D~~aR~~Ilk~~~kkmp~~~~vdl~~La~~ 632 (693)
T KOG0730|consen 603 DLEARLEILKQCAKKMPFSEDVDLEELAQA 632 (693)
T ss_pred cHHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 888889999998865443444567777764
No 169
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0033 Score=58.29 Aligned_cols=142 Identities=11% Similarity=0.056 Sum_probs=73.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC------CCCCCCcCHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLF------NESWSSKNVQEKAQ 248 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~~ 248 (352)
...+.++|+.|+||||+|+.+........ .... ..+......+.+...-.+. .........++..+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~-~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEA-PQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCC-CCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 56788999999999999999998873211 1000 0111111111111110000 00001122233222
Q ss_pred HHHHHh-----CCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCCh-HHHhh-ccCCceeecCCCCHHHHH
Q 047607 249 EIFKIL-----SDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRDF-EVCGQ-MEAHRSFKVECLAYEDAW 319 (352)
Q Consensus 249 ~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~~-~v~~~-~~~~~~~~l~~L~~~e~~ 319 (352)
+.+.+ .+++-++|+|+++.. ...+.+...+..- ..++.+|+||.+. .+... .+....+.+.+++.++..
T Consensus 94 -l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-p~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~ 171 (328)
T PRK05707 94 -LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP-SGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESL 171 (328)
T ss_pred -HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC-CCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHH
Confidence 22222 234556678999874 2333333333222 3456667777664 33322 233457899999999999
Q ss_pred HHHHHhh
Q 047607 320 ELFEEKV 326 (352)
Q Consensus 320 ~Lf~~~~ 326 (352)
+.+....
T Consensus 172 ~~L~~~~ 178 (328)
T PRK05707 172 QWLQQAL 178 (328)
T ss_pred HHHHHhc
Confidence 8887753
No 170
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.37 E-value=0.00056 Score=62.76 Aligned_cols=117 Identities=22% Similarity=0.206 Sum_probs=66.8
Q ss_pred cchHHHHHHHHHHhc----CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 047607 158 GLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGL 233 (352)
Q Consensus 158 Gr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (352)
++........+++.. ....-+.++|+.|+|||.||..+++... ...+. +.++++ ..++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~-v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVS-STLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCC-EEEEEH------HHHHHHHHHHHhc
Confidence 444444445555542 1346789999999999999999999983 33333 455544 3455555555421
Q ss_pred CCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cccc--ccccCCCCCC-CCCcEEEEecCC
Q 047607 234 FNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP--VDLA--QVGLPIPSPR-STSSKVVFTSRD 295 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~--~l~~~~~~~~-~~gs~IiiTTr~ 295 (352)
.+..+.+. .+ .+-=||||||+-.. .+|. ++...+.+.+ ..+-.+|+||..
T Consensus 206 -------~~~~~~l~----~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVKEKID----AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -------CcHHHHHH----Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11222222 22 24569999999643 4564 2333221110 245668888864
No 171
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.36 E-value=0.0049 Score=57.06 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhc---CCcEEEEEEecCCCcHHHHHHHHHHhhc
Q 047607 160 QSTFERVWSCVME---DTIGIVGLYGMGGVGKTTLLTQINNKFL 200 (352)
Q Consensus 160 ~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (352)
+...+.|.+.+.+ +...+|+|.|.=|+||||+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455667777765 4678999999999999999999999983
No 172
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.36 E-value=0.00052 Score=63.07 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=58.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES---WSSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (352)
.-+++-|+|++|+||||||.+++... ...-..++|++....+++. .+..++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45789999999999999999998877 2334568899887766653 34444432111 1233455566666
Q ss_pred HHHhCC-CcEEEEEeCCCC
Q 047607 251 FKILSD-KKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~~-kr~LlVlDdv~~ 268 (352)
...++. .--+||+|.+-.
T Consensus 126 ~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHhccCCCEEEEcchHh
Confidence 655544 456999999753
No 173
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.35 E-value=0.0019 Score=56.60 Aligned_cols=165 Identities=13% Similarity=0.161 Sum_probs=93.8
Q ss_pred CccccchHHHHH---HHHHHhcC------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHH
Q 047607 154 TSVVGLQSTFER---VWSCVMED------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQ 224 (352)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 224 (352)
++++|.++...+ |++.|.+. .++.|..+|++|.|||.+|+.+.+.. .-.|- -| ...++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l---~v------kat~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLL---LV------KATEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceE---Ee------chHHH-
Confidence 457998877664 56777664 47889999999999999999999987 22221 11 11111
Q ss_pred HHHHHHcCCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCc----------cc----ccccccCCCCC-CCCCcE
Q 047607 225 ECVAEKIGLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEP----------VD----LAQVGLPIPSP-RSTSSK 288 (352)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~----------~~----~~~l~~~~~~~-~~~gs~ 288 (352)
|-+..| +....+..+.+.- +.-.|++.+|+++-. .+ .+.+...+... .+.|..
T Consensus 188 --iGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 188 --IGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred --HHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 111111 1122333333333 346899999998641 11 11121111110 145666
Q ss_pred EEEecCChHHHhhc---cCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHh
Q 047607 289 VVFTSRDFEVCGQM---EAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQ 342 (352)
Q Consensus 289 IiiTTr~~~v~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~ 342 (352)
.|-.|.+.++.... ....-++...-+++|-.+++...+..=-...+..++.+++
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~ 313 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAA 313 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHH
Confidence 67777766553221 1234677778888999999988873322122333555544
No 174
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.34 E-value=0.00043 Score=64.03 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=24.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+..++|||++|+|||.+|+.+++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999998
No 175
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0028 Score=62.42 Aligned_cols=146 Identities=16% Similarity=0.092 Sum_probs=84.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
..+.+.++|++|+|||.||+.+.+.. ..+|-.+.+- . ++.. +-......+...+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~---------~----l~sk-------~vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGS---------E----LLSK-------WVGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCH---------H----Hhcc-------ccchHHHHHHHHHHHH
Confidence 45689999999999999999999976 4555433221 1 1111 1222233333444445
Q ss_pred hCCCcEEEEEeCCCCcccc-------------cccccCCCCC-CCCCcEEEEecCChHHHhh---c--cCCceeecCCCC
Q 047607 254 LSDKKFMLLLDDIWEPVDL-------------AQVGLPIPSP-RSTSSKVVFTSRDFEVCGQ---M--EAHRSFKVECLA 314 (352)
Q Consensus 254 L~~kr~LlVlDdv~~~~~~-------------~~l~~~~~~~-~~~gs~IiiTTr~~~v~~~---~--~~~~~~~l~~L~ 314 (352)
.+...+.|.+|+++....+ .++...+... ...+..||-||........ . .-+..+.+.+-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 5678999999999763211 1122122111 0234445556655433221 1 235678999999
Q ss_pred HHHHHHHHHHhhccccc--cCCCCcHHHHh
Q 047607 315 YEDAWELFEEKVGREIL--LYIPLETNIHQ 342 (352)
Q Consensus 315 ~~e~~~Lf~~~~~~~~~--~~~~~l~~i~~ 342 (352)
.++..++|+.+...... ..+-.++++++
T Consensus 412 ~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~ 441 (494)
T COG0464 412 LEERLEIFKIHLRDKKPPLAEDVDLEELAE 441 (494)
T ss_pred HHHHHHHHHHHhcccCCcchhhhhHHHHHH
Confidence 99999999998864331 22344555554
No 176
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.33 E-value=0.00082 Score=57.55 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=36.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCC
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-LQLEKIQECVAEKIGLF 234 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~ 234 (352)
++++.++|+.|+||||.+-.+..... .+ -..+..++.... ....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~-~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK-LK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH-HT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh-hc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 47899999999999988777777763 12 344666665432 23444556666666643
No 177
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.32 E-value=0.0022 Score=55.86 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=52.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHc----CCCCCCCCCcCHHH---H
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKI----GLFNESWSSKNVQE---K 246 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~---~ 246 (352)
.-.++.|.|.+|+||||++.++.... ...-..++|++....+. .-+.+++... ...--.....+..+ .
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 46899999999999999999999877 23334677887655443 2233333321 00000001122222 2
Q ss_pred HHHHHHHhCCCcEEEEEeCCCC
Q 047607 247 AQEIFKILSDKKFMLLLDDIWE 268 (352)
Q Consensus 247 ~~~l~~~L~~kr~LlVlDdv~~ 268 (352)
...+...+..+.-++|+|.+-.
T Consensus 93 ~~~~~~~~~~~~~lvvIDsi~~ 114 (218)
T cd01394 93 IQETETFADEKVDLVVVDSATA 114 (218)
T ss_pred HHHHHHHHhcCCcEEEEechHH
Confidence 3344555555567999999853
No 178
>PRK09354 recA recombinase A; Provisional
Probab=97.32 E-value=0.00074 Score=62.58 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=59.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES---WSSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (352)
.-+++-|+|++|+|||||+.+++... ...-..++|+.....++.. .+..++...+. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999998877 3344678899988777653 34555433211 1233455666666
Q ss_pred HHHhCC-CcEEEEEeCCCC
Q 047607 251 FKILSD-KKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~~-kr~LlVlDdv~~ 268 (352)
...++. +--+||+|.+-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 666544 456999999853
No 179
>PRK09183 transposase/IS protein; Provisional
Probab=97.32 E-value=0.00044 Score=62.00 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+.|+|++|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567799999999999999998875
No 180
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.30 E-value=0.0017 Score=65.76 Aligned_cols=151 Identities=17% Similarity=0.125 Sum_probs=81.0
Q ss_pred ccccchHHHHHHHH---HHhcC---------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHH
Q 047607 155 SVVGLQSTFERVWS---CVMED---------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEK 222 (352)
Q Consensus 155 ~~vGr~~~~~~l~~---~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 222 (352)
++.|.+...+++.+ ++... -.+-+.++|++|+|||++|+.+.... ..+| +.++.+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------
Confidence 35676655555443 33221 13458999999999999999998877 3333 2222221
Q ss_pred HHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc----------------ccccccCCCC-CCCC
Q 047607 223 IQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD----------------LAQVGLPIPS-PRST 285 (352)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~-~~~~ 285 (352)
+. ... ...........+.......+++|+||+++.... ...+...+.. ....
T Consensus 221 ~~----~~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FV----EMF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hH----Hhh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 11 111 111112222333333345678999999975310 1111111111 0023
Q ss_pred CcEEEEecCChHHHhh--c---cCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 286 SSKVVFTSRDFEVCGQ--M---EAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 286 gs~IiiTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+.-+|.||...+.... . ..+..+.+...+.++-.++|..+...
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 4556667776553211 1 13467788888888888888877643
No 181
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.27 E-value=0.0017 Score=58.14 Aligned_cols=94 Identities=24% Similarity=0.313 Sum_probs=58.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC-------CCCcCH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVS---PNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES-------WSSKNV 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (352)
.-.+.=|+|++|+|||.|+.+++-....- ...-..++|++....++..++. +|++..+...+. ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 34688899999999999999887654111 1223479999999999888875 577765432110 012233
Q ss_pred HHH---HHHHHHHh-CCCcEEEEEeCCCC
Q 047607 244 QEK---AQEIFKIL-SDKKFMLLLDDIWE 268 (352)
Q Consensus 244 ~~~---~~~l~~~L-~~kr~LlVlDdv~~ 268 (352)
.++ +..+...+ .++=-|||+|.+-.
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHhhccccceEEEEecchHH
Confidence 333 33444444 34456999999853
No 182
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.27 E-value=0.0059 Score=55.51 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=98.2
Q ss_pred CccccchHHHHHHHHHHhc----CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH-HHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL-EKIQECVA 228 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~i~ 228 (352)
..++|-.++..++-.++.. ++..-+.|+||.|.|||+|......+.++..++| +-|......-. .-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 4689999999998888865 4667788999999999999988888753333443 33443332211 12344444
Q ss_pred HHcCCCCC--CCCCcCHHHHHHHHHHHhCC------CcEEEEEeCCCCcccc------cccccCCCCCCCCCcEEEEecC
Q 047607 229 EKIGLFNE--SWSSKNVQEKAQEIFKILSD------KKFMLLLDDIWEPVDL------AQVGLPIPSPRSTSSKVVFTSR 294 (352)
Q Consensus 229 ~~l~~~~~--~~~~~~~~~~~~~l~~~L~~------kr~LlVlDdv~~~~~~------~~l~~~~~~~~~~gs~IiiTTr 294 (352)
.++..... .....+..+....|-..|+. .++++|+|+++--..- =.+...-.....+-|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 44422111 00223333444455555532 3589999998643110 0111111111145567788998
Q ss_pred ChHH---Hhhcc---CCc-eeecCCCCHHHHHHHHHHhh
Q 047607 295 DFEV---CGQME---AHR-SFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 295 ~~~v---~~~~~---~~~-~~~l~~L~~~e~~~Lf~~~~ 326 (352)
-... ..... .+. ++-+++++-++...++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 6433 22222 233 45678888899999998876
No 183
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.26 E-value=0.0024 Score=52.25 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=31.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccC
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQ 219 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 219 (352)
++.|+|++|+||||++..+.... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 36899999999999999999987 33445678888765543
No 184
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.25 E-value=0.00072 Score=56.83 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=29.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEE
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV 213 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (352)
...+|.+.|++|+||||+|+.++... ...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEe
Confidence 45689999999999999999999988 34555555553
No 185
>PRK06696 uridine kinase; Validated
Probab=97.24 E-value=0.00051 Score=60.16 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHHh---cCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 158 GLQSTFERVWSCVM---EDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 158 Gr~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.+.+++|.+.+. .....+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35667777777774 3468899999999999999999999887
No 186
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00089 Score=68.62 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=37.9
Q ss_pred CccccchHHHHHHHHHHhc--------C-CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVME--------D-TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------~-~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|.++.++.|.+.+.. + ....+.++|++|+|||+||+.+....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999998888762 1 24578999999999999999998877
No 187
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.24 E-value=0.0027 Score=58.40 Aligned_cols=94 Identities=16% Similarity=0.241 Sum_probs=60.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC-------CCcCH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVS---PNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW-------SSKNV 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 243 (352)
.-+++-|+|++|+|||+|+.+++-..... ...-..++|++....+++.++. ++++.++...+.. ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCH
Confidence 45788999999999999999887544110 1122478999999888888875 5677775432210 11233
Q ss_pred HHHH---HHHHHHhC-CCcEEEEEeCCCC
Q 047607 244 QEKA---QEIFKILS-DKKFMLLLDDIWE 268 (352)
Q Consensus 244 ~~~~---~~l~~~L~-~kr~LlVlDdv~~ 268 (352)
++.. ..+...+. ++--|||+|.+-.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 3333 33443443 3455899999853
No 188
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.22 E-value=0.0004 Score=67.83 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=40.8
Q ss_pred CccccchHHHHHHHHHHh------cCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVM------EDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+++|.++.+++|++.|. +...+++.++||+|+||||||+.+.+-.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 357999999999999883 3467899999999999999999999987
No 189
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.002 Score=57.56 Aligned_cols=75 Identities=23% Similarity=0.287 Sum_probs=48.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
+..-+.++|++|+|||.||..+.+.. . +..+. +.++ +..+++.++....... .....|.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l-~-~~g~s-v~f~------~~~el~~~Lk~~~~~~----------~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL-L-KAGIS-VLFI------TAPDLLSKLKAAFDEG----------RLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-H-HcCCe-EEEE------EHHHHHHHHHHHHhcC----------chHHHHHHH
Confidence 66789999999999999999999999 3 33333 4444 3556666666655321 111222221
Q ss_pred hCCCcEEEEEeCCCC
Q 047607 254 LSDKKFMLLLDDIWE 268 (352)
Q Consensus 254 L~~kr~LlVlDdv~~ 268 (352)
+ .+-=||||||+-.
T Consensus 165 l-~~~dlLIiDDlG~ 178 (254)
T COG1484 165 L-KKVDLLIIDDIGY 178 (254)
T ss_pred h-hcCCEEEEecccC
Confidence 2 1234899999965
No 190
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.19 E-value=0.0026 Score=56.35 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=61.6
Q ss_pred HHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCC
Q 047607 162 TFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWS 239 (352)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 239 (352)
.+..+.+...+ .....+.++|.+|+|||+||..+++... ..-..+++++ ..+++..+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 34444444433 2235789999999999999999999883 2223455553 44455444443321 1
Q ss_pred CcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--ccccc--cccCCCCCCCCCcEEEEecCC
Q 047607 240 SKNVQEKAQEIFKILSDKKFMLLLDDIWEP--VDLAQ--VGLPIPSPRSTSSKVVFTSRD 295 (352)
Q Consensus 240 ~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~--l~~~~~~~~~~gs~IiiTTr~ 295 (352)
..+... +.+.+. +.=+|||||+... .+|.. +...+...-.+...+||||..
T Consensus 150 ~~~~~~----~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 150 ETSEEQ----LLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cccHHH----HHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 112222 223344 3448889999653 33432 111111110224567777764
No 191
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.19 E-value=0.004 Score=57.60 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=59.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCC----CCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC-------CCcC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPN----HFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW-------SSKN 242 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 242 (352)
...++-|+|++|+|||+++.+++.... ... .-..++|++....+++.++. ++++.++...+.. ...+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~-~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQ-LPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhc-cccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCC
Confidence 467899999999999999999987652 111 11479999998888877765 4555554322100 1111
Q ss_pred H---HHHHHHHHHHhCC--CcEEEEEeCCCC
Q 047607 243 V---QEKAQEIFKILSD--KKFMLLLDDIWE 268 (352)
Q Consensus 243 ~---~~~~~~l~~~L~~--kr~LlVlDdv~~ 268 (352)
. ......+...+.. +--|||+|.+-.
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 1 2234555555544 334999999854
No 192
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.015 Score=50.82 Aligned_cols=164 Identities=15% Similarity=0.142 Sum_probs=92.6
Q ss_pred ccc-chHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 156 VVG-LQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 156 ~vG-r~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
++| .++.+++|.+-+.- .++.-+.++|++|.|||-||+.++++. .+-|+.+|..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----
Confidence 454 56677776665431 267888999999999999999999876 2455666543
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCccc-----------------c--cccccCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEPVD-----------------L--AQVGLPIPS 281 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~-----------------~--~~l~~~~~~ 281 (352)
++....-+.. ..+...|.-.- ..-..+|.+|++++... + -.-...|..
T Consensus 216 ----elvqk~igeg--------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 216 ----ELVQKYIGEG--------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred ----HHHHHHhhhh--------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 1112111100 11112221111 34567888888875210 1 011233333
Q ss_pred CCCCCcEEEEecCChHHHhh--cc---CCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhhhh
Q 047607 282 PRSTSSKVVFTSRDFEVCGQ--ME---AHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQAEV 345 (352)
Q Consensus 282 ~~~~gs~IiiTTr~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~iv 345 (352)
.+.-+||..|..-++... +. -+.-++..+-+++.-.++++-+.-.-+.-.--+++.|++++.
T Consensus 284 --tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ 350 (404)
T KOG0728|consen 284 --TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP 350 (404)
T ss_pred --ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC
Confidence 366788887765444221 12 245678888888887888876553222222335777777764
No 193
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.13 E-value=0.00057 Score=58.70 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=61.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH-HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE-KIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
+++.|+|+.|+||||++..+.... ..+....++.- ..+.... .-...+..+-. ...+.......++..|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 578999999999999999888776 33333333332 1111100 00000110000 0111223445567777
Q ss_pred CCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHh
Q 047607 255 SDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCG 300 (352)
Q Consensus 255 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~ 300 (352)
+...=++++|++.+.+.+....... ..|..++.|+...++..
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a----~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA----ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH----HcCCEEEEEecCCcHHH
Confidence 7677799999998766554432221 34566888887666543
No 194
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0013 Score=65.03 Aligned_cols=74 Identities=27% Similarity=0.231 Sum_probs=52.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL--QLEKIQECVAEKIGLFNESWSSKNVQEKAQEIF 251 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (352)
..+.|.|.|+.|+|||+|++.+++... .+..-.+.+|+|+.-. ..+.+++. +...+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~-------------------l~~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKF-------------------LNNVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHH-------------------HHHHHH
Confidence 356788999999999999999999983 5666677788876531 12222211 122344
Q ss_pred HHhCCCcEEEEEeCCCC
Q 047607 252 KILSDKKFMLLLDDIWE 268 (352)
Q Consensus 252 ~~L~~kr~LlVlDdv~~ 268 (352)
+.+...+.+|||||++.
T Consensus 489 e~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHhhCCcEEEEcchhh
Confidence 55677889999999974
No 195
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0074 Score=60.43 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=93.0
Q ss_pred CccccchHHHHHHHHHHhc---------C---CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVME---------D---TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
+++=|.++.+.+|.+-+.- . +.+-|.++|+||.|||-||+.|.... . .-|+++-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----
Confidence 4566788888888776532 1 36679999999999999999999987 2 334444332
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc-----------ccc----cc---ccCCCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV-----------DLA----QV---GLPIPSPR 283 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----------~~~----~l---~~~~~~~~ 283 (352)
++++-- -..+.+...+.+.+.=.-+.|.|.||++++.. ..+ ++ ...+.++.
T Consensus 740 ----ELLNMY-------VGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~ 808 (953)
T KOG0736|consen 740 ----ELLNMY-------VGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS 808 (953)
T ss_pred ----HHHHHH-------hcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC
Confidence 222221 11122222222333334589999999998631 011 11 12233322
Q ss_pred CCCcEEEEecCChHHHh--hc---cCCceeecCCCCHHHHHHHHHHhhccc-cccCCCCcHHHHhh
Q 047607 284 STSSKVVFTSRDFEVCG--QM---EAHRSFKVECLAYEDAWELFEEKVGRE-ILLYIPLETNIHQA 343 (352)
Q Consensus 284 ~~gs~IiiTTr~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~l~~i~~~ 343 (352)
..+--||=.|..+++.. .+ ..++.+.+++=+..++..=..+..-.. ..+.+-+|.+|++.
T Consensus 809 s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~ 874 (953)
T KOG0736|consen 809 SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKK 874 (953)
T ss_pred CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhh
Confidence 55666777776655421 12 235667777777766654333222110 12234567777664
No 196
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.11 E-value=0.00018 Score=66.91 Aligned_cols=141 Identities=23% Similarity=0.269 Sum_probs=95.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
..+.+.++|.||+||||++-++.. .. ..+-+.+.++.+..-.+...+.-.+...++... .+-+.....+..+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHHH
Confidence 358899999999999999999998 41 334446677777776677777766677676543 2223445567778
Q ss_pred hCCCcEEEEEeCCCCcc-cccccccCCCCCCCCCcEEEEecCChHHHhhccCCceeecCCCCHH-HHHHHHHHhh
Q 047607 254 LSDKKFMLLLDDIWEPV-DLAQVGLPIPSPRSTSSKVVFTSRDFEVCGQMEAHRSFKVECLAYE-DAWELFEEKV 326 (352)
Q Consensus 254 L~~kr~LlVlDdv~~~~-~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~ 326 (352)
..++|.++|+||..... .-..+...+-.+ ...-.|+.|+|..... .......+.+|+.. ++.++|...+
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~-~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGA-CPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHcc-chhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHH
Confidence 88999999999986542 111222223333 4555688888775432 33456677788765 7899998876
No 197
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.11 E-value=0.0041 Score=57.40 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=57.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhcc---CCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC-------CCcCH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLV---SPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW-------SSKNV 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 243 (352)
...++.|+|.+|+|||+|+..++..... ....-..++|++....++..++ .++++.++...... ...+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 4689999999999999999998764311 0111236799998887777764 45566654432110 11233
Q ss_pred HHH---HHHHHHHhCC-CcEEEEEeCCCC
Q 047607 244 QEK---AQEIFKILSD-KKFMLLLDDIWE 268 (352)
Q Consensus 244 ~~~---~~~l~~~L~~-kr~LlVlDdv~~ 268 (352)
++. +..+...+.. +--|||+|.+-.
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 333 3333333433 456999999853
No 198
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0043 Score=57.40 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=24.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+-+.++|++|.|||-||+.|+...
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 46789999999999999999999988
No 199
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.09 E-value=0.0014 Score=64.96 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=52.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
..++..++|++|+||||||..+.++. .| .++=|+.|..-+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45899999999999999999999876 23 2667788887777776666666653221 2
Q ss_pred hC--CCcEEEEEeCCCCc
Q 047607 254 LS--DKKFMLLLDDIWEP 269 (352)
Q Consensus 254 L~--~kr~LlVlDdv~~~ 269 (352)
|. ++..-||+|+++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 21 46667888888753
No 200
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.08 E-value=0.004 Score=57.91 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=59.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC-------CCCcCH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVS---PNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES-------WSSKNV 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (352)
.-.+.-|+|++|+|||+|+.+++-....- ...-..++|++....+++.++. ++++.++...+. ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCCH
Confidence 45788899999999999999987544110 1122478999999999988865 467777654211 012334
Q ss_pred HHHH---HHHHHHhC-CCcEEEEEeCCCC
Q 047607 244 QEKA---QEIFKILS-DKKFMLLLDDIWE 268 (352)
Q Consensus 244 ~~~~---~~l~~~L~-~kr~LlVlDdv~~ 268 (352)
++.. ..+...+. .+--|||+|.+-.
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 4333 33333343 3445899999853
No 201
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.019 Score=53.10 Aligned_cols=156 Identities=6% Similarity=0.027 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC-----
Q 047607 161 STFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLF----- 234 (352)
Q Consensus 161 ~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~----- 234 (352)
...+.|.+.+..+. ...+.+.|+.|+||+++|+.+........ ... ...+......+.+...-.+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~-~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT-PQG-------DQPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC-CCC-------CCCCCCCHHHHHHhcCCCCCEEEEc
Confidence 34566777776655 46788999999999999999998773211 110 00111111111111111000
Q ss_pred CCCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEecCCh-HHHhhc-cCC
Q 047607 235 NESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRDF-EVCGQM-EAH 305 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~~-~v~~~~-~~~ 305 (352)
........+++.. .+.+.+ .+++-++|+|+++... ....+...+..- ..++.+|++|.+. .+...+ +..
T Consensus 81 p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-p~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 81 PIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP-RPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred cccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChHhCchHHHhhc
Confidence 0000122233332 222322 3566688899998752 223332222222 4456666666553 443332 334
Q ss_pred ceeecCCCCHHHHHHHHHHhh
Q 047607 306 RSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
..+.+.+++.++..+.+....
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHh
Confidence 688999999999998887753
No 202
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0067 Score=58.35 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=35.8
Q ss_pred ccccch---HHHHHHHHHHhcC--------C-cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 155 SVVGLQ---STFERVWSCVMED--------T-IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 155 ~~vGr~---~~~~~l~~~L~~~--------~-~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
++-|-| .++++|++.|++. + ++-|.++|+||.|||-||+.+.-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 355665 4667788889874 1 4678899999999999999998876
No 203
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.05 E-value=0.0022 Score=54.09 Aligned_cols=74 Identities=24% Similarity=0.336 Sum_probs=42.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
+..-+.++|++|+|||.||..+.+... ...+ .+.|++ ..+++..+-..- ...........
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~-~v~f~~------~~~L~~~l~~~~-------~~~~~~~~~~~---- 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGY-SVLFIT------ASDLLDELKQSR-------SDGSYEELLKR---- 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCCH-------CCTTHCHHHHH----
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCc-ceeEee------cCceeccccccc-------cccchhhhcCc----
Confidence 346799999999999999999999873 2333 355654 344444443211 11222222222
Q ss_pred hCCCcEEEEEeCCCC
Q 047607 254 LSDKKFMLLLDDIWE 268 (352)
Q Consensus 254 L~~kr~LlVlDdv~~ 268 (352)
+. +-=||||||+-.
T Consensus 106 l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LK-RVDLLILDDLGY 119 (178)
T ss_dssp HH-TSSCEEEETCTS
T ss_pred cc-cccEecccccce
Confidence 22 335888999965
No 204
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.05 E-value=0.00072 Score=57.12 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|.|+|++|+||||+|+.+...+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998877
No 205
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.04 E-value=0.0061 Score=58.58 Aligned_cols=57 Identities=26% Similarity=0.249 Sum_probs=36.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-LQLEKIQECVAEKIGL 233 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~ 233 (352)
.+.++.++|++|+||||++..++.... ...+ .+..+++... +...+-+..+...++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK--KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 468999999999999999999998773 2223 3333443321 1233445556666554
No 206
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.04 E-value=0.00042 Score=55.81 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=31.9
Q ss_pred ccchHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 157 VGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 157 vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
||.-..++++.+.+.. .....|.|.|.+|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666667777666653 345677899999999999999999877
No 207
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.03 E-value=0.0073 Score=51.60 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=46.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCC---EEEEEEeCCccCHHHHHHHHHHHcC--CCCCCCCCcCHHHHHHHHH
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFD---FVIWVVVSKDLQLEKIQECVAEKIG--LFNESWSSKNVQEKAQEIF 251 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~~~l~ 251 (352)
||+|.|++|+||||+|+.+..... ..... .....+........... ..-.... ..-..+...+.+.+...|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLR-DRKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHH-HHHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchh-hHhhccccccCCCCccccCHHHHHHHHH
Confidence 699999999999999999999883 22232 23333332222222211 1112111 1112234567777777777
Q ss_pred HHhCCCcEEEE
Q 047607 252 KILSDKKFMLL 262 (352)
Q Consensus 252 ~~L~~kr~LlV 262 (352)
...+++..-+-
T Consensus 78 ~L~~g~~i~~p 88 (194)
T PF00485_consen 78 ALKNGGSIEIP 88 (194)
T ss_dssp HHHTTSCEEEE
T ss_pred HHhCCCccccc
Confidence 76666665443
No 208
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.02 E-value=0.0032 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
++.+.|++|+||||++..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999877
No 209
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.01 E-value=0.0034 Score=56.24 Aligned_cols=92 Identities=18% Similarity=0.319 Sum_probs=56.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCC-CEEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----CCCCc-CHH--
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF-DFVIWVVVSKDL-QLEKIQECVAEKIGLFNE----SWSSK-NVQ-- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~-~~~-- 244 (352)
+-.-++|+|.+|+|||||++.+++.. ..+| +.++++-+.+.. .+.++..++...-..... ..... ...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34678999999999999999999988 3334 456666676543 455555555543111100 00111 111
Q ss_pred ---HHHHHHHHHh--C-CCcEEEEEeCCCC
Q 047607 245 ---EKAQEIFKIL--S-DKKFMLLLDDIWE 268 (352)
Q Consensus 245 ---~~~~~l~~~L--~-~kr~LlVlDdv~~ 268 (352)
...-.+.+++ + ++.+|+++||+-.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1223345555 3 8899999999854
No 210
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.00 E-value=0.0052 Score=54.35 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=56.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC-----------------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE----------------- 236 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------------- 236 (352)
.-+++.|.|++|+|||+|+.++.... -..-..++|++... ++..+.+.+. +++....
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEeccccc
Confidence 56899999999999999999987665 13345788888765 4455554432 2221100
Q ss_pred ------C-----CCCcCHHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 047607 237 ------S-----WSSKNVQEKAQEIFKILSD-KKFMLLLDDIWE 268 (352)
Q Consensus 237 ------~-----~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~ 268 (352)
. ....+..+....+.+.+.. +.-++|+|.+-.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 0 0123556666777766643 344799999854
No 211
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.97 E-value=0.0033 Score=59.23 Aligned_cols=86 Identities=23% Similarity=0.338 Sum_probs=52.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW---SSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (352)
.-.++.|.|.+|+|||||+.++..... ..-..++|++.... ...+ ..-+..++...+.. ...+.+.+.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 457999999999999999999998772 33356788876543 3332 22344555432211 123334443333
Q ss_pred HHHhCCCcEEEEEeCCCC
Q 047607 251 FKILSDKKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~~kr~LlVlDdv~~ 268 (352)
. ..+.-++|+|.+..
T Consensus 155 ~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 E---ELKPDLVIIDSIQT 169 (372)
T ss_pred H---hcCCcEEEEcchHH
Confidence 2 33667899999843
No 212
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.97 E-value=0.00075 Score=59.22 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-|.|.|++|+||||+|+.+...+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998887
No 213
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.96 E-value=0.0066 Score=53.52 Aligned_cols=88 Identities=14% Similarity=0.182 Sum_probs=57.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC----------------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES---------------- 237 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------------- 237 (352)
..+++.|.|.+|+|||+|+.++.... ...-..++|++.... +..+...+ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 46899999999999999999997654 123457889888654 44555443 333321100
Q ss_pred --CCCcCHHHHHHHHHHHhCC-CcEEEEEeCCC
Q 047607 238 --WSSKNVQEKAQEIFKILSD-KKFMLLLDDIW 267 (352)
Q Consensus 238 --~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 267 (352)
....+.+.....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122345666777776654 55689999975
No 214
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0078 Score=61.14 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=90.5
Q ss_pred ccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC-----EEEEEEeCCccCHHHHHHHHHH
Q 047607 155 SVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD-----FVIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-----~~~wv~~s~~~~~~~~~~~i~~ 229 (352)
.++||++++.++++.|......--.++|.+|+|||.++.-++.+.- ...-+ ..++. .++..
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~s-----LD~g~------- 236 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYS-----LDLGS------- 236 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEE-----ecHHH-------
Confidence 3799999999999999876555556789999999999988888762 22211 11111 11111
Q ss_pred HcCCCCCCCCCcCHHHHHHHHHHHhC-CCcEEEEEeCCCCc----------ccccc-cccCCCCCCCCCcEEEEecCChH
Q 047607 230 KIGLFNESWSSKNVQEKAQEIFKILS-DKKFMLLLDDIWEP----------VDLAQ-VGLPIPSPRSTSSKVVFTSRDFE 297 (352)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~----------~~~~~-l~~~~~~~~~~gs~IiiTTr~~~ 297 (352)
-..+.. ..-+.++....+.+.++ .++.+|.+|.++.. .+-.+ +++.+..+ .-+.|-.|-..+
T Consensus 237 LvAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG---eL~~IGATT~~E 310 (786)
T COG0542 237 LVAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG---ELRCIGATTLDE 310 (786)
T ss_pred Hhcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC---CeEEEEeccHHH
Confidence 111111 23445666655555553 45899999999852 11222 34444443 234444443333
Q ss_pred HHhhcc-------CCceeecCCCCHHHHHHHHHHhh
Q 047607 298 VCGQME-------AHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 298 v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
--..+. .-..+.++..+.+++..++.-..
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 222221 23577899999999999887543
No 215
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.0029 Score=54.46 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=24.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.-+|+|-|.+|+||||+|+.++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999998
No 216
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.93 E-value=0.0048 Score=53.52 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=38.0
Q ss_pred CccccchHHHHHHHHHHh----cCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVM----EDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|.+...+.|++... .-...-+.+||..|.||++|++.+.+..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 357998888888776543 3356789999999999999999999988
No 217
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.92 E-value=0.00079 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.758 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|.|.|++|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 218
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.91 E-value=0.00086 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999999877
No 219
>PRK14527 adenylate kinase; Provisional
Probab=96.91 E-value=0.0014 Score=55.97 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.|+|++|+||||+|+.+...+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998877
No 220
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.063 Score=47.27 Aligned_cols=172 Identities=13% Similarity=0.114 Sum_probs=93.8
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
+++=|-++.+++|++++.- ..++-+..+|++|.|||-+|+....+- ...|-
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFL------------- 234 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFL------------- 234 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHH-------------
Confidence 4567899999999988741 145678899999999999999998876 33332
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhC-CCcEEEEEeCCCCcc----------c----------ccccccCC
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILS-DKKFMLLLDDIWEPV----------D----------LAQVGLPI 279 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~----------~----------~~~l~~~~ 279 (352)
++..-=+.++... . -..+..--...-+ ....+|.+|+++-.. + +.+ ...|
T Consensus 235 -KLAgPQLVQMfIG------d-GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ-LDGF 305 (424)
T KOG0652|consen 235 -KLAGPQLVQMFIG------D-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ-LDGF 305 (424)
T ss_pred -HhcchHHHhhhhc------c-hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh-hcCC
Confidence 1111011111110 0 0111111111222 356888889886310 0 111 1233
Q ss_pred CCCCCCCcEEEEecCChHHH-----hhccCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhhhhcCCCCCC
Q 047607 280 PSPRSTSSKVVFTSRDFEVC-----GQMEAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQAEVIPNSSNC 352 (352)
Q Consensus 280 ~~~~~~gs~IiiTTr~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~iv~~~~~~~ 352 (352)
.. ....+||-.|...++. ++-.-+.-++...-+++.--.++.-+.-.-+...+-..+++++.---+|.-+|
T Consensus 306 ss--~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQc 381 (424)
T KOG0652|consen 306 SS--DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQC 381 (424)
T ss_pred CC--ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhh
Confidence 33 3566888877655442 22122344555444444444444444433233455678999988777777666
No 221
>PHA00729 NTP-binding motif containing protein
Probab=96.90 E-value=0.0014 Score=56.93 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=29.5
Q ss_pred HHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 165 RVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+++.+.+.+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566666677789999999999999999999876
No 222
>PRK06547 hypothetical protein; Provisional
Probab=96.90 E-value=0.0016 Score=54.61 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=28.2
Q ss_pred HHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 166 VWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+...+......+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344555678899999999999999999998875
No 223
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.90 E-value=0.0032 Score=53.09 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=64.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEE---eCCccCHHH------HHHHHHHHcCCCCC---CCCCc
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV---VSKDLQLEK------IQECVAEKIGLFNE---SWSSK 241 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~------~~~~i~~~l~~~~~---~~~~~ 241 (352)
+-.+++|+|+.|+|||||++.++... ......++++ +.. .+... ...++++.++.... ....-
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 44699999999999999999998765 2233444443 221 11111 11224555554321 01112
Q ss_pred CHH-HHHHHHHHHhCCCcEEEEEeCCCCccc---ccccccCCCCCCCC-CcEEEEecCChHHHh
Q 047607 242 NVQ-EKAQEIFKILSDKKFMLLLDDIWEPVD---LAQVGLPIPSPRST-SSKVVFTSRDFEVCG 300 (352)
Q Consensus 242 ~~~-~~~~~l~~~L~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~-gs~IiiTTr~~~v~~ 300 (352)
+.. ...-.+...+-..+-++++|+--..-+ ...+...+...... +..||++|.+.....
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 222 222234445556778899998765322 22222222211012 678888888866543
No 224
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.89 E-value=0.0039 Score=51.24 Aligned_cols=117 Identities=20% Similarity=0.199 Sum_probs=61.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEE---EEeCCccCHHHHHHHHHHHcC---CC-CCCCCCcCH-----
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIW---VVVSKDLQLEKIQECVAEKIG---LF-NESWSSKNV----- 243 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w---v~~s~~~~~~~~~~~i~~~l~---~~-~~~~~~~~~----- 243 (352)
..|-|++..|.||||+|....-+.. ...+. +.+ +.......-..++..+ ..+. .. ...+...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~~-v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGYR-VGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCCe-EEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 5788999999999999999988772 23333 333 3332223333333333 0110 00 000011111
Q ss_pred --HHHHHHHHHHhCCCc-EEEEEeCCCCc-----ccccccccCCCCCCCCCcEEEEecCChH
Q 047607 244 --QEKAQEIFKILSDKK-FMLLLDDIWEP-----VDLAQVGLPIPSPRSTSSKVVFTSRDFE 297 (352)
Q Consensus 244 --~~~~~~l~~~L~~kr-~LlVlDdv~~~-----~~~~~l~~~~~~~~~~gs~IiiTTr~~~ 297 (352)
.......++.+.... =|+|||++-.. .+.+.+...+... ..+.-+|+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r-p~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK-PEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC-CCCCEEEEECCCCC
Confidence 112334445555544 49999998543 2233343334443 56679999999843
No 225
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.89 E-value=0.004 Score=52.35 Aligned_cols=124 Identities=16% Similarity=0.160 Sum_probs=64.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccC--CC---CCC--EEEEEEeCCccCHHHHHHHHHHHcCCCCC----CCCCcC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVS--PN---HFD--FVIWVVVSKDLQLEKIQECVAEKIGLFNE----SWSSKN 242 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 242 (352)
.-.+++|+|+.|+|||||.+.+..+.-.+ .. .|. .+.|+ .+ .+.+..++.... ....-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34789999999999999999986432111 11 111 12332 11 356666664321 111112
Q ss_pred H--HHHHHHHHHHhCCC--cEEEEEeCCCCccc---ccccccCCCCCCCCCcEEEEecCChHHHhhccCCceeec
Q 047607 243 V--QEKAQEIFKILSDK--KFMLLLDDIWEPVD---LAQVGLPIPSPRSTSSKVVFTSRDFEVCGQMEAHRSFKV 310 (352)
Q Consensus 243 ~--~~~~~~l~~~L~~k--r~LlVlDdv~~~~~---~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~~~~~~~~l 310 (352)
. ..... +...+-.+ .-+++||+--..-+ ...+...+......|..||++|.+.+.... +++.+.+
T Consensus 90 gGq~qrl~-laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVK-LASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHH-HHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2 22233 33344445 66888898755322 122222222110246778888888776532 4455544
No 226
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.88 E-value=0.0075 Score=54.26 Aligned_cols=129 Identities=12% Similarity=0.078 Sum_probs=68.0
Q ss_pred HHHHHHHHhc-CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC-CCCC---
Q 047607 163 FERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGL-FNES--- 237 (352)
Q Consensus 163 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~--- 237 (352)
.+.++..|.. .....++|+|++|+|||||.+.+..... .....+++.-.. ....+-..++...... +...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEE-eecchhHHHHHHHhcccccccccc
Confidence 3444444443 3457899999999999999999998762 223333432111 0000111233322211 1110
Q ss_pred -CCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHh
Q 047607 238 -WSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCG 300 (352)
Q Consensus 238 -~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~ 300 (352)
.+..+......-+...+ ...+-++++|++-..+.+..+...+ ..|..+|+||.+..+..
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----hCCCEEEEEechhHHHH
Confidence 00011111122233333 2578899999997766555554333 24778999998766643
No 227
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.015 Score=58.73 Aligned_cols=162 Identities=14% Similarity=0.160 Sum_probs=88.2
Q ss_pred ccccchHHH---HHHHHHHhcC---------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHH
Q 047607 155 SVVGLQSTF---ERVWSCVMED---------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEK 222 (352)
Q Consensus 155 ~~vGr~~~~---~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 222 (352)
++.|-++.. +++++.|.++ -++=+.++|+||+|||-||+.++-.. .-. ++++|..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---gVP-----F~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVP-----FFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---CCc-----eeeechH-----
Confidence 467777544 5566677653 25678899999999999999999877 222 3333322
Q ss_pred HHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCcc-----------------cccccccCCCCC-C
Q 047607 223 IQECVAEKIGLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEPV-----------------DLAQVGLPIPSP-R 283 (352)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~~-~ 283 (352)
+.++.+.... ...+..|...- ...+++|.+|+++... .+.++..-+..- .
T Consensus 379 ---EFvE~~~g~~--------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ---EFVEMFVGVG--------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---HHHHHhcccc--------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 2222222111 11222222222 3467888899886421 122332222111 0
Q ss_pred CCCcEEEEecCChHHHhh--c---cCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHh
Q 047607 284 STSSKVVFTSRDFEVCGQ--M---EAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQ 342 (352)
Q Consensus 284 ~~gs~IiiTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~ 342 (352)
..+.-++-+|+..++... + .-+..+.++.-+.....++|.-++-.-.. +.+...+++
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~ 509 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK 509 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH
Confidence 222333445555444221 1 23567788888888899999988855442 233444444
No 228
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0068 Score=54.53 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=60.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH-cC---CCCCCCCCcCHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK-IG---LFNESWSSKNVQEKAQE 249 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~---~~~~~~~~~~~~~~~~~ 249 (352)
.-+++=|+|+.|+||||+|.+++-.. +..-..++|++....+++..+. ++... +. .... .........++.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~-~~~e~q~~i~~~ 133 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQP-DTGEQQLEIAEK 133 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecC-CCHHHHHHHHHH
Confidence 45788899999999999999998877 4555589999999999988764 44444 22 1110 012222334444
Q ss_pred HHHHhCCCcEEEEEeCCCC
Q 047607 250 IFKILSDKKFMLLLDDIWE 268 (352)
Q Consensus 250 l~~~L~~kr~LlVlDdv~~ 268 (352)
+......+--|+|+|.+-.
T Consensus 134 ~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 134 LARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHhccCCCCEEEEecCcc
Confidence 4444444456999999854
No 229
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.037 Score=51.05 Aligned_cols=154 Identities=8% Similarity=0.054 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC-----
Q 047607 161 STFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLF----- 234 (352)
Q Consensus 161 ~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~----- 234 (352)
...+++.+.+..++ ...+.+.|+.|+||+++|..+............ .| ......+.+...-.+.
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~-----~C----g~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE-----AC----GFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-----CC----CCCHHHHHHHcCCCCCEEEEe
Confidence 34566677776665 468999999999999999999887632111000 01 1111111111111000
Q ss_pred -CCCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEecCC-hHHHhhc-cC
Q 047607 235 -NESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRD-FEVCGQM-EA 304 (352)
Q Consensus 235 -~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~-~~v~~~~-~~ 304 (352)
........+++.. .+.+.+ .+++-++|+|+++... ..+.+...+..- ..++.+|++|.+ ..+...+ +.
T Consensus 81 p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 81 PEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP-APNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred cCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChhhChHHHHhc
Confidence 0000122333332 233333 2455688999998652 233332222222 345555555554 4443333 34
Q ss_pred CceeecCCCCHHHHHHHHHHh
Q 047607 305 HRSFKVECLAYEDAWELFEEK 325 (352)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~ 325 (352)
...+.+.+++.++..+.+...
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHc
Confidence 457899999999998888754
No 230
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.86 E-value=0.01 Score=52.13 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=24.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+..+++|.|++|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999887
No 231
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.85 E-value=0.0047 Score=56.66 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=55.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW---SSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (352)
.-+++-|+|++|+||||||..+.... +..-..++|+.....+++.. +..+|...+.. .+...++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 35799999999999999999999887 33456789999988766633 44555433211 233445566666
Q ss_pred HHHhCCC-cEEEEEeCCCCc
Q 047607 251 FKILSDK-KFMLLLDDIWEP 269 (352)
Q Consensus 251 ~~~L~~k-r~LlVlDdv~~~ 269 (352)
...++.. --++|+|.|-..
T Consensus 124 e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-
T ss_pred HHHhhcccccEEEEecCccc
Confidence 6666544 458999998653
No 232
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.82 E-value=0.013 Score=54.48 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=59.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC-------CCcCH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVS---PNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW-------SSKNV 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 243 (352)
.-.++-|+|.+|+|||+|+..++-..... ...-..++|++....+++.++. +|++.++...... ...+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 45788899999999999999888654110 1112379999999998888764 6677765432110 12233
Q ss_pred HHHHHHH---HHHh-CCCcEEEEEeCCCC
Q 047607 244 QEKAQEI---FKIL-SDKKFMLLLDDIWE 268 (352)
Q Consensus 244 ~~~~~~l---~~~L-~~kr~LlVlDdv~~ 268 (352)
+.....+ ...+ ..+--|||+|.+-.
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 3333333 2333 33556999999853
No 233
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.81 E-value=0.0021 Score=58.03 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHH
Q 047607 164 ERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKI 223 (352)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 223 (352)
..+++.+...+ +-+.++|++|+|||++++....... ...| ...-++++...+...+
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~--~~~~-~~~~~~~s~~Tts~~~ 78 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLD--SDKY-LVITINFSAQTTSNQL 78 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCST--TCCE-EEEEEES-TTHHHHHH
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCC--cccc-ceeEeeccCCCCHHHH
Confidence 34566666554 5668999999999999999887652 2222 2444566655444443
No 234
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.81 E-value=0.01 Score=53.86 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+.+|+|.|+.|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999998886655
No 235
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.81 E-value=0.002 Score=53.42 Aligned_cols=116 Identities=19% Similarity=0.195 Sum_probs=59.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC--ccCHHHHHHHHHHHcCCCCCCCCCcCH-HHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK--DLQLEKIQECVAEKIGLFNESWSSKNV-QEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~l 250 (352)
.-.+++|.|+.|+|||||.+.+.... ......+++.-.. ..+.... ....++... . -+. +...-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---q-LS~G~~qrl~l 93 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---Q-LSVGERQMVEI 93 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---e-cCHHHHHHHHH
Confidence 34689999999999999999998765 2334555543211 1111111 111121110 0 111 1222234
Q ss_pred HHHhCCCcEEEEEeCCCCccc---ccccccCCCCCCCCCcEEEEecCChHHHh
Q 047607 251 FKILSDKKFMLLLDDIWEPVD---LAQVGLPIPSPRSTSSKVVFTSRDFEVCG 300 (352)
Q Consensus 251 ~~~L~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~gs~IiiTTr~~~v~~ 300 (352)
...+-.++-++++|+--..-+ ...+...+......|..||++|.+.....
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 444555677888899765422 12222222111024677888888876433
No 236
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.80 E-value=0.0031 Score=59.66 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=38.0
Q ss_pred CccccchHHHHHHHHHHhcC--------------CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMED--------------TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|+++.++.+.-++... ..+.|.++|++|+|||+||+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999988886666531 24688999999999999999999987
No 237
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.80 E-value=0.0074 Score=54.54 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=28.2
Q ss_pred HHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 167 WSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 167 ~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++...+..++.|.|.+|+|||||+..+.+..
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344445678999999999999999999999987
No 238
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.04 Score=51.27 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=42.2
Q ss_pred CCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCC-hHHHhhc-cCCceeecCCCCHHHHHHHHHHh
Q 047607 256 DKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRD-FEVCGQM-EAHRSFKVECLAYEDAWELFEEK 325 (352)
Q Consensus 256 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 325 (352)
+++-++|+|+++.. ...+.+...+..- ..++.+|++|.+ ..+...+ +....+.+.+++.++..+.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEP-PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCC-CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 45568899999875 2333333333222 455655555544 4443332 33467899999999999888764
No 239
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0028 Score=51.56 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=33.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLF 234 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 234 (352)
+|.|-|++|+||||+|+.+.+++. -.| .+.-.++++++...+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g---l~~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG---LKL-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC---Cce-----------eeccHHHHHHHHHcCCC
Confidence 689999999999999999999882 211 13446778888887654
No 240
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.036 Score=48.70 Aligned_cols=153 Identities=15% Similarity=0.170 Sum_probs=83.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHH
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK-DLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIF 251 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (352)
++.+++.++|.-|+|||.+.+...... .+.--+. +.+.. ..+...+...++..+............+.....|.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~---~~d~~~~--v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL---NEDQVAV--VVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc---CCCceEE--EEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 466899999999999999999555444 1111122 33333 44677788888888876321111122233334444
Q ss_pred HHh-CCCc-EEEEEeCCCCc--ccccccc--cCCCCCCCCCcEEEEecCC--------hHHHhhccCCce-eecCCCCHH
Q 047607 252 KIL-SDKK-FMLLLDDIWEP--VDLAQVG--LPIPSPRSTSSKVVFTSRD--------FEVCGQMEAHRS-FKVECLAYE 316 (352)
Q Consensus 252 ~~L-~~kr-~LlVlDdv~~~--~~~~~l~--~~~~~~~~~gs~IiiTTr~--------~~v~~~~~~~~~-~~l~~L~~~ 316 (352)
... +++| ..+++||.... ..++.++ ..+.......-+|+..-.. ......-..... |+++|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 444 5677 89999998764 2222221 1111110111223332221 111111111123 899999999
Q ss_pred HHHHHHHHhhcccc
Q 047607 317 DAWELFEEKVGREI 330 (352)
Q Consensus 317 e~~~Lf~~~~~~~~ 330 (352)
+.-.++..+..+..
T Consensus 204 ~t~~yl~~~Le~a~ 217 (269)
T COG3267 204 ETGLYLRHRLEGAG 217 (269)
T ss_pred HHHHHHHHHHhccC
Confidence 99888888875543
No 241
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0019 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 242
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.78 E-value=0.0098 Score=59.17 Aligned_cols=62 Identities=16% Similarity=0.099 Sum_probs=45.7
Q ss_pred CCccccchHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc
Q 047607 153 PTSVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD 217 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 217 (352)
...++|....+.++.+.+.. .....|.|+|.+|+|||++|+.+++... ..-...+.++|..-
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~---r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP---RAKRPFVKVNCAAL 258 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC---CCCCCeEEeecCCC
Confidence 35789999999988887753 2345678999999999999999998762 22234456666543
No 243
>PRK06762 hypothetical protein; Provisional
Probab=96.77 E-value=0.0013 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 244
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.77 E-value=0.004 Score=49.96 Aligned_cols=41 Identities=34% Similarity=0.336 Sum_probs=31.4
Q ss_pred EEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHH
Q 047607 178 VGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQ 224 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 224 (352)
|.++|++|+|||+||+.++... . ....-+.++...+..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEeccccccccce
Confidence 6799999999999999999987 1 234456777777777665
No 245
>PRK08233 hypothetical protein; Provisional
Probab=96.77 E-value=0.0013 Score=55.43 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|+|.|++|+||||||..+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999877
No 246
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.0019 Score=52.53 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhc
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFL 200 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (352)
--|+|.||||+||||+++.+.+...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999884
No 247
>PTZ00035 Rad51 protein; Provisional
Probab=96.75 E-value=0.02 Score=53.35 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=57.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC-------CCCcCH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVS---PNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES-------WSSKNV 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (352)
.-.++.|+|++|+|||+|+..++-..+.- ...-..++|++....+++.++ .++++.++..... ....+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 46889999999999999999987655100 112236779998877777764 4556665443210 012333
Q ss_pred HHHHHHH---HHHhC-CCcEEEEEeCCCC
Q 047607 244 QEKAQEI---FKILS-DKKFMLLLDDIWE 268 (352)
Q Consensus 244 ~~~~~~l---~~~L~-~kr~LlVlDdv~~ 268 (352)
++....+ ...+. .+--|||+|.+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 3333333 33333 3446999999854
No 248
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.75 E-value=0.0015 Score=56.63 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+..+|+|.|++|+|||||++.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999876
No 249
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.74 E-value=0.012 Score=54.32 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=58.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC-------CCcCH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVS---PNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW-------SSKNV 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 243 (352)
...++-|+|++|+|||+|+.+++.....- ...-..++||+....++..++. ++++.++...... ...+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~ 172 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNS 172 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCH
Confidence 46889999999999999999998775210 0011379999998888877754 4555554322100 01111
Q ss_pred ---HHHHHHHHHHhCCC---cEEEEEeCCCC
Q 047607 244 ---QEKAQEIFKILSDK---KFMLLLDDIWE 268 (352)
Q Consensus 244 ---~~~~~~l~~~L~~k---r~LlVlDdv~~ 268 (352)
......+.+.+... .-+||+|.+-.
T Consensus 173 ~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 173 NHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 12334455555432 44899998854
No 250
>PRK04328 hypothetical protein; Provisional
Probab=96.74 E-value=0.0077 Score=53.68 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=54.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC-----------------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE----------------- 236 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------------- 236 (352)
.-+++.|.|++|+|||+|+.++.... ...-...+|++.... +..+.+ .+++++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~--~~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~ 95 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH--PVQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGG 95 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC--HHHHHH-HHHHcCCCHHHHhhcCCEEEEeccccc
Confidence 46899999999999999999987764 233456788887663 333332 3333332100
Q ss_pred ------C-----CCCcCHHHHHHHHHHHhCC-CcEEEEEeCCC
Q 047607 237 ------S-----WSSKNVQEKAQEIFKILSD-KKFMLLLDDIW 267 (352)
Q Consensus 237 ------~-----~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 267 (352)
. ....+.......+.+.++. +.-++|+|.+-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt 138 (249)
T PRK04328 96 IGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVS 138 (249)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChh
Confidence 0 0123445556666666543 44579999984
No 251
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.74 E-value=0.011 Score=54.82 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=40.4
Q ss_pred cccchHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC
Q 047607 156 VVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 216 (352)
Q Consensus 156 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 216 (352)
++|....+.++.+.+.. .....|.|.|.+|+||+++|+.+++... ..-...+-|+|..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~---r~~~pfv~vnc~~ 60 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK---RWQGPLVKLNCAA 60 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC---ccCCCeEEEeCCC
Confidence 46777777777666643 2346689999999999999999988662 2223445566654
No 252
>PRK07667 uridine kinase; Provisional
Probab=96.73 E-value=0.0023 Score=54.75 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=29.4
Q ss_pred HHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 163 FERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+.|.+.+.. .+..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555543 345799999999999999999999877
No 253
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.73 E-value=0.0083 Score=50.28 Aligned_cols=123 Identities=23% Similarity=0.199 Sum_probs=69.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEe---------------------CCcc--------------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV---------------------SKDL-------------- 218 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---------------------s~~~-------------- 218 (352)
+-..+.++|++|.|||||.+.+|...+ .-...+|++- -|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~----pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER----PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc----CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 457899999999999999999998872 2223444320 0110
Q ss_pred -------CHHHH---HHHHHHHcCCCCCC---C--CCcCHHHHHHHHHHHhCCCcEEEEEeCC----CCcccccccccCC
Q 047607 219 -------QLEKI---QECVAEKIGLFNES---W--SSKNVQEKAQEIFKILSDKKFMLLLDDI----WEPVDLAQVGLPI 279 (352)
Q Consensus 219 -------~~~~~---~~~i~~~l~~~~~~---~--~~~~~~~~~~~l~~~L~~kr~LlVlDdv----~~~~~~~~l~~~~ 279 (352)
...++ ..+.++..+..... + -.-..++... |.+.+-+++-+|+-|+= +-...|+-+...-
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRva-IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfe 181 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVA-IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHH-HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHH
Confidence 12223 33334444433211 0 1122233333 44455577778888854 3334454332211
Q ss_pred CCCCCCCcEEEEecCChHHHhhc
Q 047607 280 PSPRSTSSKVVFTSRDFEVCGQM 302 (352)
Q Consensus 280 ~~~~~~gs~IiiTTr~~~v~~~~ 302 (352)
.-+ ..|..|+++|.+..+...+
T Consensus 182 ein-r~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 182 EIN-RLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHh-hcCcEEEEEeccHHHHHhc
Confidence 122 6799999999999887766
No 254
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.0077 Score=56.55 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=35.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCC
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-LQLEKIQECVAEKIGL 233 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~ 233 (352)
..++.++|+.|+||||++..+..... .......+..++.... ....+-+....+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv 195 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 195 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCC
Confidence 47999999999999999999998762 1111234555553331 2233444444445543
No 255
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0089 Score=52.98 Aligned_cols=124 Identities=19% Similarity=0.147 Sum_probs=73.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC-----ccCHHHHHHHHHHHcCCCCCCC----CCcCHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK-----DLQLEKIQECVAEKIGLFNESW----SSKNVQ 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~~----~~~~~~ 244 (352)
+-.+++|+|.+|+|||||++.+..-. ..... .+++.... .....+-..+++..++...+.. ..-+-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~G-~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTSG-EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCCc-eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45799999999999999999998876 33333 33333211 2223445666777776543211 111222
Q ss_pred HHH-HHHHHHhCCCcEEEEEeCCCCccc------ccccccCCCCCCCCCcEEEEecCChHHHhhcc
Q 047607 245 EKA-QEIFKILSDKKFMLLLDDIWEPVD------LAQVGLPIPSPRSTSSKVVFTSRDFEVCGQME 303 (352)
Q Consensus 245 ~~~-~~l~~~L~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~~ 303 (352)
+.+ -.+.+.|.-+.-|+|.|+.-+.-+ .-.+...+.. ..|-..++.|.+-.+...+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~--~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE--ELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH--HhCCeEEEEEEEHHhhhhhc
Confidence 222 234556677888999999765422 1222222333 35677888888888777664
No 256
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.72 E-value=0.0025 Score=61.45 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=38.8
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++||++.++.+...+..+ .-+.|.|++|+|||+||+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 46899999999998888654 578899999999999999999876
No 257
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.037 Score=51.05 Aligned_cols=153 Identities=10% Similarity=0.104 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHhcCCc-EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC------
Q 047607 160 QSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG------ 232 (352)
Q Consensus 160 ~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~------ 232 (352)
+...+.+...+..+.. ..+.++|+.|+||+++|..+...... .....+- .+.. ...+...-.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~-------~c~~---c~~~~~g~HPD~~~i 78 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAA-------AQRT---RQLIAAGTHPDLQLV 78 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCC-------cchH---HHHHhcCCCCCEEEE
Confidence 3455677777776654 56999999999999999999887632 1111100 0000 000000000
Q ss_pred --CCCC-CC---CCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEecCC-hHH
Q 047607 233 --LFNE-SW---SSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRD-FEV 298 (352)
Q Consensus 233 --~~~~-~~---~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~-~~v 298 (352)
.+.. .. .....++ +..+.+.+ .+++-++|+|+++... .-+.+...+..- ..++.+|++|.+ ..+
T Consensus 79 ~~~p~~~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~~~fiL~~~~~~~l 156 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP-SPGRYLWLISAQPARL 156 (319)
T ss_pred ecCCCcccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC-CCCCeEEEEECChhhC
Confidence 0000 00 0111222 22233322 2456799999998642 122222222211 345666666654 444
Q ss_pred Hhhc-cCCceeecCCCCHHHHHHHHHHh
Q 047607 299 CGQM-EAHRSFKVECLAYEDAWELFEEK 325 (352)
Q Consensus 299 ~~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 325 (352)
...+ +....+.+.+++.++..+.+...
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLAQ 184 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHHc
Confidence 3332 33457889999999988888754
No 258
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.72 E-value=0.0094 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|+|.|.+|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 259
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.71 E-value=0.0013 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|.|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 260
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.70 E-value=0.0081 Score=50.53 Aligned_cols=127 Identities=16% Similarity=0.152 Sum_probs=63.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC------------CCCc
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES------------WSSK 241 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~~~~ 241 (352)
.-.+++|.|+.|+|||||++.+..... .....+++.-. .+......+...++..... ...-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK----PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 346899999999999999999987651 22233443211 1111111122222110000 0111
Q ss_pred CHHH-HHHHHHHHhCCCcEEEEEeCCCCccc---ccccccCCCCCCCCCcEEEEecCChHHHhhccCCceeec
Q 047607 242 NVQE-KAQEIFKILSDKKFMLLLDDIWEPVD---LAQVGLPIPSPRSTSSKVVFTSRDFEVCGQMEAHRSFKV 310 (352)
Q Consensus 242 ~~~~-~~~~l~~~L~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~~~~~~~~l 310 (352)
+..+ ..-.|...+-.++-+++||+-...-+ ...+...+... ..+..||++|.+...... .++.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1111 12223444556677889999865422 11222222222 236778888888776542 3444443
No 261
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.69 E-value=0.0098 Score=57.01 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+.++.++|++|+||||++..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999988887765
No 262
>PRK14974 cell division protein FtsY; Provisional
Probab=96.68 E-value=0.019 Score=53.30 Aligned_cols=92 Identities=18% Similarity=0.136 Sum_probs=48.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCCC-CCCCcCHHHHH-HHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-LQLEKIQECVAEKIGLFNE-SWSSKNVQEKA-QEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~-~~l 250 (352)
+..++.++|++|+||||++..+..... ...+. ++.+..... .....-+......++.+.. .....+....+ ..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~~-V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGFS-VVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCe-EEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888887763 23333 333443211 1223334556666654321 11122222222 222
Q ss_pred HHHhCCCcEEEEEeCCCC
Q 047607 251 FKILSDKKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~~kr~LlVlDdv~~ 268 (352)
...-....=++++|..-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 221112222888887744
No 263
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0096 Score=55.65 Aligned_cols=96 Identities=23% Similarity=0.316 Sum_probs=60.7
Q ss_pred HHHHHHHHhcC--CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC--
Q 047607 163 FERVWSCVMED--TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW-- 238 (352)
Q Consensus 163 ~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-- 238 (352)
+.++-+.|-.. .-.++.|=|-||+|||||.-++..+.. ..- .+.||+-.....-.+ --++.++...+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~~Qik---lRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESLQQIK---LRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCHHHHH---HHHHHhCCCccceEE
Confidence 34444445443 458999999999999999999999983 333 788887665433322 2345555433211
Q ss_pred -CCcCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 047607 239 -SSKNVQEKAQEIFKILSDKKFMLLLDDIWE 268 (352)
Q Consensus 239 -~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 268 (352)
...+.+...+.+.+ .+.-|+|+|-+..
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 23444444444443 5778999999854
No 264
>PRK10867 signal recognition particle protein; Provisional
Probab=96.68 E-value=0.01 Score=57.01 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+.+|.++|++|+||||++..+...+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999888877765
No 265
>PRK04132 replication factor C small subunit; Provisional
Probab=96.67 E-value=0.018 Score=59.51 Aligned_cols=126 Identities=10% Similarity=0.061 Sum_probs=74.9
Q ss_pred cCCCcHHHHHHHHHHhhccCCCCC-CEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEE
Q 047607 183 MGGVGKTTLLTQINNKFLVSPNHF-DFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFML 261 (352)
Q Consensus 183 ~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~Ll 261 (352)
|.++||||+|..++++.. .+.+ ..++-++.|.......+. +++..+.... + .-..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~----~------------~~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIR-EKVKEFARTK----P------------IGGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHH-HHHHHHHhcC----C------------cCCCCCEEE
Confidence 678999999999999872 2223 246777877755554333 3333221100 0 001245799
Q ss_pred EEeCCCCcc--cccccccCCCCCCCCCcEEEEecCC-hHHHhhc-cCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 262 LLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRD-FEVCGQM-EAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 262 VlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
|||+++... ....+...+..- ...+++|++|.+ ..+...+ +....+.+.+++.++....+...+..
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep-~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~ 704 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMF-SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN 704 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCC-CCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHh
Confidence 999998763 444444333322 345566665554 3333222 33468899999999988888776543
No 266
>PTZ00301 uridine kinase; Provisional
Probab=96.67 E-value=0.0017 Score=56.20 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4789999999999999999988776
No 267
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.66 E-value=0.0016 Score=55.06 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.++|.|.|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 268
>PRK03839 putative kinase; Provisional
Probab=96.65 E-value=0.0015 Score=55.02 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.|.|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 269
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.65 E-value=0.011 Score=53.64 Aligned_cols=88 Identities=23% Similarity=0.295 Sum_probs=46.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFK 252 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (352)
+..+++++|++|+||||++..+..... ....-..+..++..... ....-+......++.+.. ...+...+...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 357999999999999999999988762 11111245556554321 122233333344443221 1223334433333
Q ss_pred HhCCCcEEEEEeCC
Q 047607 253 ILSDKKFMLLLDDI 266 (352)
Q Consensus 253 ~L~~kr~LlVlDdv 266 (352)
.+.+ .=+|++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3333 347777753
No 270
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.64 E-value=0.018 Score=50.50 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=63.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC-----------------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE----------------- 236 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------------- 236 (352)
.-.++.|.|.+|+|||||+.++..... ..-..++|++.... ...+... +.+++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence 458999999999999999998876542 23456788887443 3333322 333321100
Q ss_pred ---CC--CCcCHHHHHHHHHHHhCC---CcEEEEEeCCCCc---c--cccc----cccCCCCCCCCCcEEEEecCC
Q 047607 237 ---SW--SSKNVQEKAQEIFKILSD---KKFMLLLDDIWEP---V--DLAQ----VGLPIPSPRSTSSKVVFTSRD 295 (352)
Q Consensus 237 ---~~--~~~~~~~~~~~l~~~L~~---kr~LlVlDdv~~~---~--~~~~----l~~~~~~~~~~gs~IiiTTr~ 295 (352)
.+ ...+.++....+.+.++. +.-++|+|.+... + .... +...+. ..|+.+|+|+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~---~~~~tvil~~~~ 165 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLN---RWNFTILLTSQY 165 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHH---hCCCEEEEEecc
Confidence 00 123455666666665533 3457889987532 1 0111 111111 457888888864
No 271
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.64 E-value=0.011 Score=51.39 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=70.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEe----------------------CCcc-------------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV----------------------SKDL------------- 218 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----------------------s~~~------------- 218 (352)
.--.++|+|++|+|||||...+.--.. . -...+++.. .|.+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~---p-t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDK---P-TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC---C-CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 346899999999999999999876541 1 222323221 1111
Q ss_pred -----------CHHHHHHHHHHHcCCCCCC----CCCcCH-HHHHHHHHHHhCCCcEEEEEeCCCCc------ccccccc
Q 047607 219 -----------QLEKIQECVAEKIGLFNES----WSSKNV-QEKAQEIFKILSDKKFMLLLDDIWEP------VDLAQVG 276 (352)
Q Consensus 219 -----------~~~~~~~~i~~~l~~~~~~----~~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~------~~~~~l~ 276 (352)
........+++.++..... +..-+- ++..-.+.+.|-..+-+|+-|+=-.. ...-++.
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 1233445556665554211 111111 22223345556667778888874321 1122222
Q ss_pred cCCCCCCCCCcEEEEecCChHHHhhccCCceeec
Q 047607 277 LPIPSPRSTSSKVVFTSRDFEVCGQMEAHRSFKV 310 (352)
Q Consensus 277 ~~~~~~~~~gs~IiiTTr~~~v~~~~~~~~~~~l 310 (352)
..+.. ..|..||+.|.+..++..+ ++++.+
T Consensus 186 ~~~~~--~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 186 RELNK--ERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHH--hcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 22221 3578999999999999864 344444
No 272
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.62 E-value=0.0094 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45699999999999999999998765
No 273
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.61 E-value=0.007 Score=61.82 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=59.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES---WSSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (352)
.-+++-|+|++|+|||||+.+++.... ..-..++|+.....+++ ..+++++...+. ....+.+.....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 468899999999999999988776652 23356799988777664 366777654321 1233445566666
Q ss_pred HHHhCC-CcEEEEEeCCCC
Q 047607 251 FKILSD-KKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~~-kr~LlVlDdv~~ 268 (352)
...++. +--|||+|.+-.
T Consensus 131 ~~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHHhhcCCCeEEEEcchhh
Confidence 666644 556899999853
No 274
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.60 E-value=0.0035 Score=62.09 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=39.3
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+++|.+..++.+...+.......+.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999888776666677899999999999999998754
No 275
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.60 E-value=0.0045 Score=62.20 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=56.5
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
+.++|+++.++.|...+... +.+.++|++|+||||+|+.+..... ...++..+|..-+. .+...+++.++..++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np~-~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNPE-DPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCCC-cchHHHHHHHHHhcC
Confidence 45899999988888877665 4788999999999999999998762 34467778876533 366677777776654
No 276
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.59 E-value=0.0076 Score=57.11 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=39.0
Q ss_pred CCccccchHHHHHHHHHHhcC--------------CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 153 PTSVVGLQSTFERVWSCVMED--------------TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...++|.++.++.+..++... ....+.++|++|+|||+||+.+....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999888777431 24678999999999999999999887
No 277
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.58 E-value=0.0021 Score=55.62 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+..+|+|+|++|+|||||++.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 278
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.57 E-value=0.0035 Score=54.56 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.|+|++|+||||+|+.+...+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 279
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.57 E-value=0.0051 Score=48.20 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=37.4
Q ss_pred CccccchHHHHHHHHHHhc-------CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVME-------DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|..-..+.+++++.+ .++-|++.+|.+|+|||.+++.+.+..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4578888777777776643 367899999999999999999998885
No 280
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.57 E-value=0.0072 Score=60.75 Aligned_cols=75 Identities=17% Similarity=0.129 Sum_probs=50.2
Q ss_pred CCccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 153 PTSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
-+.++|+++.++.+...+.... .+.++|++|+||||+++.+.+... ...|...+++.-+. .+...++..++..++
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~~-~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNPE-DPNMPRIVEVPAGEG 91 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCCC-CCchHHHHHHHHhhc
Confidence 3568999998888887777653 555999999999999999998872 22333344433222 234444556655553
No 281
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.56 E-value=0.0046 Score=60.45 Aligned_cols=99 Identities=25% Similarity=0.221 Sum_probs=53.5
Q ss_pred HHHHHhcC-CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEE-EEeCCcc-CHHHHHHHHHHHcCCCCCCCCCc-
Q 047607 166 VWSCVMED-TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIW-VVVSKDL-QLEKIQECVAEKIGLFNESWSSK- 241 (352)
Q Consensus 166 l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w-v~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~- 241 (352)
+++++..- .-.-.+|+|++|+|||||++.+.+... ..+-++.++ +-+...+ .+..+...+--.+-... .+..
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT--~D~p~ 481 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST--FDRPP 481 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEEC--CCCCH
Confidence 44444432 346788999999999999999999772 234444433 3444433 23333222211110000 0111
Q ss_pred ----CHHHHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 242 ----NVQEKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 242 ----~~~~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
....+.-.+-+++ .++.+||++|++-.
T Consensus 482 ~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 482 SDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 1122233344444 67899999999853
No 282
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.55 E-value=0.0058 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998765
No 283
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.55 E-value=0.0056 Score=51.66 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 284
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.55 E-value=0.0054 Score=62.91 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=44.9
Q ss_pred CccccchHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc
Q 047607 154 TSVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD 217 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 217 (352)
..++|+...+..+.+.+.. .....|.|.|.+|+|||++|+.+++.. ...-...+.++|..-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s---~r~~~~~v~i~c~~~ 438 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS---GRNNRRMVKMNCAAM 438 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc---CCCCCCeEEEecccC
Confidence 4689999888888766653 344678999999999999999998876 222234556666543
No 285
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.54 E-value=0.0041 Score=50.20 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=29.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 216 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 216 (352)
++|.|+|+.|+|||||++.+.+... ...+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999984 45666666666555
No 286
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.54 E-value=0.012 Score=47.72 Aligned_cols=110 Identities=10% Similarity=0.064 Sum_probs=82.6
Q ss_pred ccCccchhhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 047607 5 CSPSFSCDGTISQCLDCSVRQAGYICYLRDNLKDLRRESQKLIEERNDVRIRVIVAEQQQMKRLERVQGWFSRVQDVLYE 84 (352)
Q Consensus 5 ~~~~~~~~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~a~~ 84 (352)
++.+||++.+++.|...+....+....++.-++.|...++.|..++.+++..-+. .+..-+.=++++.+...+
T Consensus 5 L~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~e-------ld~~~~ee~e~L~~~L~~ 77 (147)
T PF05659_consen 5 LVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVE-------LDRPRQEEIERLKELLEK 77 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhh-------cCCchhHHHHHHHHHHHH
Confidence 3367888999999999999888888899999999999999999998886544211 122235667889999999
Q ss_pred HHHHHhhhhHHhhhhhhCCCccCcchhhchhHHHHHHHHHHHHHHH
Q 047607 85 VDRLTLESNREDAKLCLGGLCTKICKSNYKFGRKVFRTLREVQSLS 130 (352)
Q Consensus 85 ~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 130 (352)
+++++..|..-. ..++...++.+++|+++.+.+....
T Consensus 78 g~~LV~k~sk~~---------r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 78 GKELVEKCSKVR---------RWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHhcccc---------HHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 999998874221 1245566777888888877776654
No 287
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.54 E-value=0.013 Score=48.94 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=40.4
Q ss_pred cccchHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc
Q 047607 156 VVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD 217 (352)
Q Consensus 156 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 217 (352)
++|....+.++.+.+.. .....|.|+|..|+||+.+|+.+++.. ...-...+-|+|+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS---PRKNGPFISVNCAAL 61 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETTTS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehhhh
Confidence 46778888888777654 334667799999999999999999966 333445566777643
No 288
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0038 Score=52.31 Aligned_cols=121 Identities=21% Similarity=0.197 Sum_probs=61.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC--C-CCCCCcCH-------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLF--N-ESWSSKNV------- 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~--~-~~~~~~~~------- 243 (352)
.-.+++|+|+.|+|||||.+.+.... ......++++-....... ..+...++.. . ........
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 34689999999999999999998765 223445554321110000 1111122110 0 00011111
Q ss_pred -HH-HHHHHHHHhCCCcEEEEEeCCCCcccc---cccccCCCCCCCCCcEEEEecCChHHHhh
Q 047607 244 -QE-KAQEIFKILSDKKFMLLLDDIWEPVDL---AQVGLPIPSPRSTSSKVVFTSRDFEVCGQ 301 (352)
Q Consensus 244 -~~-~~~~l~~~L~~kr~LlVlDdv~~~~~~---~~l~~~~~~~~~~gs~IiiTTr~~~v~~~ 301 (352)
.+ ..-.+...+..++-++++|+--..-+. ..+...+......|..||++|.+......
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 11 112344455667789999998654322 12222221110236778888888765543
No 289
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.028 Score=52.10 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+.++|+.|+||||+|..+....
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999998876
No 290
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.53 E-value=0.0092 Score=57.81 Aligned_cols=86 Identities=24% Similarity=0.335 Sum_probs=52.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW---SSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (352)
.-.++.|.|.+|+|||||+.++..... ..-..++|++.... ...+. .-++.++...+.. ...+.+.+...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIK-LRAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHH-HHHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 457999999999999999999998872 22345788876543 33332 2245554322111 123344444333
Q ss_pred HHHhCCCcEEEEEeCCCC
Q 047607 251 FKILSDKKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~~kr~LlVlDdv~~ 268 (352)
. +.+.-++|+|.+..
T Consensus 153 ~---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 153 E---EEKPDLVVIDSIQT 167 (446)
T ss_pred H---hhCCCEEEEechhh
Confidence 2 23556899999853
No 291
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.012 Score=60.61 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=66.5
Q ss_pred CccccchHHHHHHHHHHhcC--------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMED--------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQE 225 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~--------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 225 (352)
..++|.++.+..|-+.+... ....+.+.|+.|+|||.||+.+.... -+..+..+-+++|.. ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~------~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEF------QE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhh------hh
Confidence 34788888888888777542 35678899999999999999999888 455555555555542 22
Q ss_pred HHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcE-EEEEeCCCCc
Q 047607 226 CVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKF-MLLLDDIWEP 269 (352)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~ 269 (352)
+...++. .+.... .+....|-+.++.+.| +|+||||+..
T Consensus 633 -vskligs-p~gyvG---~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 -VSKLIGS-PPGYVG---KEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred -hhhccCC-Cccccc---chhHHHHHHHHhcCCceEEEEechhhc
Confidence 2222222 211112 2233467777777776 6679999764
No 292
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.52 E-value=0.0095 Score=48.30 Aligned_cols=105 Identities=25% Similarity=0.315 Sum_probs=56.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
.-.+++|.|+.|+|||||++.+.... ......+|+.-. ..++.... -.....+... |...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~-------------~~i~~~~~--lS~G~~~rv~-lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGST-------------VKIGYFEQ--LSGGEKMRLA-LAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCe-------------EEEEEEcc--CCHHHHHHHH-HHHH
Confidence 34789999999999999999998765 223444444210 00000000 0111122223 3344
Q ss_pred hCCCcEEEEEeCCCCccc---ccccccCCCCCCCCCcEEEEecCChHHHhh
Q 047607 254 LSDKKFMLLLDDIWEPVD---LAQVGLPIPSPRSTSSKVVFTSRDFEVCGQ 301 (352)
Q Consensus 254 L~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~ 301 (352)
+-.+.-++++|+--..-+ ...+...+... +..||++|.+.+....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~ 132 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHH
Confidence 445667888998765322 22222222221 2468888887665543
No 293
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.52 E-value=0.0054 Score=55.01 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=31.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 216 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 216 (352)
.-+++.|.|++|+|||+++.++..... ..-..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 468999999999999999999877652 2234678888764
No 294
>PRK00625 shikimate kinase; Provisional
Probab=96.51 E-value=0.0023 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998887
No 295
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.51 E-value=0.0089 Score=57.28 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=50.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHc-----CCCCCCCCCcCH-----
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKI-----GLFNESWSSKNV----- 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~----- 243 (352)
.-..++|+|..|+|||||++.+.... .....+++.......++..+....+... ..-... +....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qs-d~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATS-DESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcC-CCCHHHHHHH
Confidence 34679999999999999998887654 2233455554434445555544444332 110000 11111
Q ss_pred HHHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 244 QEKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 244 ~~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
....-.+.+++ +++.+|+++||+-.
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 11222334444 57899999999853
No 296
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.51 E-value=0.0061 Score=54.79 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=66.2
Q ss_pred ccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC
Q 047607 157 VGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE 236 (352)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 236 (352)
.|......+.+..+......++.|.|+.|+||||++..+.... ...-..++.+.-+....... ..++...
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~-----~~q~~v~-- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPG-----INQVQVN-- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCC-----ceEEEeC--
Confidence 4544444444444444556789999999999999999887766 22112233332111111100 0111110
Q ss_pred CCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHH
Q 047607 237 SWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEV 298 (352)
Q Consensus 237 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v 298 (352)
..........++..|+...=.|+++++.+.+....+.... ..|-.++-|....++
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa----~tGh~v~tTlHa~~~ 186 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAA----LTGHLVLSTLHTNDA 186 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHH----HcCCcEEEEeccCCH
Confidence 1111124556677778788899999998886544332221 234445555554443
No 297
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0086 Score=50.02 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+....
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45789999999999999999998876
No 298
>PRK04040 adenylate kinase; Provisional
Probab=96.50 E-value=0.0026 Score=54.11 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999887
No 299
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.48 E-value=0.003 Score=54.90 Aligned_cols=121 Identities=12% Similarity=0.131 Sum_probs=59.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhc-cCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC-CCcCHHHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFL-VSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW-SSKNVQEKAQEIFK 252 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 252 (352)
.+.+.|.|+.|.|||||.+.+..... .....| .|..-.. .....++...++...... .......-.+++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~---v~a~~~~----~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~ 101 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSF---VPADSAT----IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSK 101 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCe---eEcCCcE----EeeeeeeeeeeCCccChhhccchHHHHHHHHHH
Confidence 48899999999999999999874321 001111 1111000 001112222222111100 11112222233333
Q ss_pred Hh--CCCcEEEEEeCCCCcccc-------cccccCCCCCCCCCcEEEEecCChHHHhhc
Q 047607 253 IL--SDKKFMLLLDDIWEPVDL-------AQVGLPIPSPRSTSSKVVFTSRDFEVCGQM 302 (352)
Q Consensus 253 ~L--~~kr~LlVlDdv~~~~~~-------~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~ 302 (352)
.+ ..++.|++||+.-...+. ..+...+......+..+|++|...++....
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 22 467899999999764321 112222221101245899999998876654
No 300
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.47 E-value=0.0064 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+++|.|+.|+|||||.+.+.-..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999997543
No 301
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.47 E-value=0.0038 Score=54.12 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|.|.|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998776
No 302
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.46 E-value=0.0026 Score=52.99 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+...|.++|++|+||||+|+.+....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999987
No 303
>PRK06217 hypothetical protein; Validated
Probab=96.46 E-value=0.0049 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.|.|++|+||||||+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999887
No 304
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.46 E-value=0.0047 Score=57.76 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=63.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
....+.|.|+.|+||||+++.+.... ..+....++. +.++... ..... ..+-...+ ...+.......++..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~e--vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNK-RSLINQRE--VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCc-cceEEccc--cCCCCcCHHHHHHHh
Confidence 45889999999999999999988766 3334444443 2221111 10000 00000000 111122345567778
Q ss_pred hCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHH
Q 047607 254 LSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEV 298 (352)
Q Consensus 254 L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v 298 (352)
|+...=.|++|++.+.+.+...... . ..|..++.|+...+.
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~a---a-~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTA---A-ETGHLVFGTLHTNSA 232 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHH---H-HcCCcEEEEEcCCCH
Confidence 8888889999999887665542222 1 355566766665444
No 305
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.44 E-value=0.023 Score=51.29 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=28.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 215 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 215 (352)
+.+++.++|++|+||||++..+..... ..-..+.++.+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCC
Confidence 468999999999999999999987772 222345556544
No 306
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.033 Score=49.99 Aligned_cols=91 Identities=21% Similarity=0.320 Sum_probs=58.7
Q ss_pred CccccchHHHHHHHHHHhc---------C---CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVME---------D---TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
+++-|.+...+.|.+...= . ..+-|.++|++|.||+-||+.|.... . .-|+++|+..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---n-----STFFSvSSSD--- 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---N-----STFFSVSSSD--- 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---C-----CceEEeehHH---
Confidence 4567888888888776431 1 36889999999999999999999877 2 2233444331
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWE 268 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~ 268 (352)
+++.- ... .+.+...|.+.- .+|..+|.+|+++.
T Consensus 202 -----LvSKW-------mGE-SEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 202 -----LVSKW-------MGE-SEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred -----HHHHH-------hcc-HHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11111 111 133444555544 46889999999975
No 307
>PRK14528 adenylate kinase; Provisional
Probab=96.43 E-value=0.0048 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.|.|.|++|+||||+++.+...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998776
No 308
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.42 E-value=0.025 Score=55.71 Aligned_cols=134 Identities=17% Similarity=0.188 Sum_probs=70.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCC-----CCCEEEEEEeCC-c--------------c-C-HHHHHHHHHHHc
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPN-----HFDFVIWVVVSK-D--------------L-Q-LEKIQECVAEKI 231 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~~s~-~--------------~-~-~~~~~~~i~~~l 231 (352)
.-..|+|+|+.|+|||||.+.+......... .--.+.|+.-.. . + . ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 4568999999999999999999765521111 111233332111 0 0 0 133444455555
Q ss_pred CCCCCCC----CCcCH-HHHHHHHHHHhCCCcEEEEEeCCCCcccc---cccccCCCCCCCCCcEEEEecCChHHHhhcc
Q 047607 232 GLFNESW----SSKNV-QEKAQEIFKILSDKKFMLLLDDIWEPVDL---AQVGLPIPSPRSTSSKVVFTSRDFEVCGQME 303 (352)
Q Consensus 232 ~~~~~~~----~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~~---~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~~ 303 (352)
+...+.. ..-+- +...-.|...+-.+.-+||||+=-+.-+. +.+...+.. -+| .||+.|.+........
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~--f~G-tvl~VSHDr~Fl~~va 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEG-TVLLVSHDRYFLDRVA 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh--CCC-eEEEEeCCHHHHHhhc
Confidence 4433211 01111 22233445566678899999986554332 222233332 233 4788888887766553
Q ss_pred CCceeecC
Q 047607 304 AHRSFKVE 311 (352)
Q Consensus 304 ~~~~~~l~ 311 (352)
.+.+.+.
T Consensus 504 -~~i~~~~ 510 (530)
T COG0488 504 -TRIWLVE 510 (530)
T ss_pred -ceEEEEc
Confidence 3445444
No 309
>PRK14529 adenylate kinase; Provisional
Probab=96.41 E-value=0.013 Score=51.05 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=45.8
Q ss_pred EEEEecCCCcHHHHHHHHHHhhccCCCCCCE--EEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhC
Q 047607 178 VGLYGMGGVGKTTLLTQINNKFLVSPNHFDF--VIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILS 255 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~--~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 255 (352)
|.|.|++|+||||+++.+...+. -.+.+. .+.-.+..........++++..- ...+.+-....+.+.|.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~--~~~is~gdllr~~i~~~t~lg~~i~~~i~~G-------~lvpdei~~~lv~~~l~ 73 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD--LAHIESGAIFREHIGGGTELGKKAKEYIDRG-------DLVPDDITIPMILETLK 73 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCCcccchhhhhhccCCChHHHHHHHHHhcc-------CcchHHHHHHHHHHHHh
Confidence 78899999999999999998872 223321 11112222223333344444332 22233334455555553
Q ss_pred C-CcEEEEEeCCCCc
Q 047607 256 D-KKFMLLLDDIWEP 269 (352)
Q Consensus 256 ~-kr~LlVlDdv~~~ 269 (352)
. ...-+|||.+=..
T Consensus 74 ~~~~~g~iLDGfPRt 88 (223)
T PRK14529 74 QDGKNGWLLDGFPRN 88 (223)
T ss_pred ccCCCcEEEeCCCCC
Confidence 2 1445899998654
No 310
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.41 E-value=0.017 Score=48.99 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=30.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCC-------CCEEEEEEeCCc
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNH-------FDFVIWVVVSKD 217 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~s~~ 217 (352)
-.+..|.|++|+||||++..+.......... -..+.|++....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3588999999999999999999988422222 236888887665
No 311
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.08 Score=46.42 Aligned_cols=44 Identities=32% Similarity=0.351 Sum_probs=33.2
Q ss_pred cccchHHHHHHHHHHh-------------cCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 156 VVGLQSTFERVWSCVM-------------EDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 156 ~vGr~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+=|.+-..+++.+... -+.++-+.++|++|+|||.||+.+.++-
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 4456655566555432 1457888999999999999999999987
No 312
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.022 Score=53.67 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.++|+++|++|+||||++..+....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 313
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.02 Score=50.50 Aligned_cols=49 Identities=31% Similarity=0.312 Sum_probs=35.5
Q ss_pred cccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC
Q 047607 156 VVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD 207 (352)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~ 207 (352)
+=|=.+.+++|.+...- +.++-+.++|++|.|||-+|+.+.|+- ...|-
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dacfi 240 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DACFI 240 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---CceEE
Confidence 34555666666554321 356778899999999999999999987 45554
No 314
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.39 E-value=0.0095 Score=52.16 Aligned_cols=88 Identities=23% Similarity=0.218 Sum_probs=54.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCC-CCEEEEEEeCCccCHHHHHHHHHHHcCCCCC-------------CCC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNH-FDFVIWVVVSKDLQLEKIQECVAEKIGLFNE-------------SWS 239 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------~~~ 239 (352)
..+++.|.|++|+|||+|+.++..... .. =..++|++...+ ...+...+- +++.... ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 568999999999999999998776541 22 346788887654 344443322 3332100 001
Q ss_pred -----CcCHHHHHHHHHHHhCC-CcEEEEEeCCC
Q 047607 240 -----SKNVQEKAQEIFKILSD-KKFMLLLDDIW 267 (352)
Q Consensus 240 -----~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 267 (352)
..+.......+.+.++. +...+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34667777777777654 44789999873
No 315
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.39 E-value=0.0063 Score=54.79 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhc
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFL 200 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (352)
+.|.|+|.||+||||+|+.+.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999873
No 316
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.38 E-value=0.0082 Score=52.95 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=39.8
Q ss_pred HHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHH
Q 047607 162 TFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQ 224 (352)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 224 (352)
...+++..+.. .+..+|+|.|+||+||+||.-.+...+. ...+--.++=|.-|++++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCCCccc
Confidence 34556666654 3678999999999999999999999884 33444466777777776544443
No 317
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.38 E-value=0.013 Score=47.84 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
++.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999887
No 318
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.36 E-value=0.0025 Score=48.86 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|-|+|++|+|||+||+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999998877
No 319
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.35 E-value=0.0068 Score=54.31 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=46.5
Q ss_pred HHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHH
Q 047607 163 FERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQE 225 (352)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 225 (352)
-.+|+..+.. .+..+|+|.|.||+||+||.-.+...+ ....+--.++=|.-|++++--.++.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccc
Confidence 3556666654 367899999999999999999999988 4455656777777777776444443
No 320
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.35 E-value=0.0098 Score=51.80 Aligned_cols=53 Identities=28% Similarity=0.312 Sum_probs=34.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhcc----CCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLV----SPNHFDFVIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~----~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 229 (352)
+..|+|+||.||||++..+...... ........+-+...++..+..++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7899999999999766666665511 1144455666666677778888877777
No 321
>PRK14531 adenylate kinase; Provisional
Probab=96.35 E-value=0.0061 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..|.|+|++|+||||+++.+...+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998887
No 322
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.026 Score=53.50 Aligned_cols=90 Identities=17% Similarity=0.205 Sum_probs=47.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCC-CCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSP-NHFDFVIWVVVSKDL-QLEKIQECVAEKIGLFNESWSSKNVQEKAQEIF 251 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (352)
...++.++|+.|+||||.+..+........ .+-..+..+++.... ....-+...++.++.+-. ...+...+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999998887762111 122344455544321 122224445555544321 1222333333333
Q ss_pred HHhCCCcEEEEEeCCC
Q 047607 252 KILSDKKFMLLLDDIW 267 (352)
Q Consensus 252 ~~L~~kr~LlVlDdv~ 267 (352)
+. .+.-++++|..-
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 22 234466677664
No 323
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.34 E-value=0.11 Score=48.38 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC-----
Q 047607 161 STFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLF----- 234 (352)
Q Consensus 161 ~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~----- 234 (352)
..-+++.+.+..++ ...+.+.|+.|+||+++|..+......... .+.. .| +...-.+.+.....+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~-~~~~---~C----g~C~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQP-QGHK---SC----GHCRGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCC-CCCC---CC----CCCHHHHHHHcCCCCCEEEEe
Confidence 44567777777664 568889999999999999998887632111 0000 01 1111111111110000
Q ss_pred CCCC-CCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEecCC-hHHHhhc-cC
Q 047607 235 NESW-SSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRD-FEVCGQM-EA 304 (352)
Q Consensus 235 ~~~~-~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~-~~v~~~~-~~ 304 (352)
.+.. ....+++..+ +.+.+ .+++-++|+|+++... .-+.+...+..- ..++..|++|.+ ..+...+ +.
T Consensus 81 p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 81 PEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP-PENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred cccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC-CCCeEEEEEECChhhChHHHHhc
Confidence 0000 1122333322 33322 3566799999998652 222222222221 345555555554 4444332 33
Q ss_pred CceeecCCCCHHHHHHHHHHh
Q 047607 305 HRSFKVECLAYEDAWELFEEK 325 (352)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~ 325 (352)
...+.+.+++.++..+.+...
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred cccccCCCCCHHHHHHHHHHc
Confidence 457889999999988877654
No 324
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.34 E-value=0.025 Score=49.70 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=32.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECV 227 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 227 (352)
...++.|.|++|+|||||+.++..... ... ..++|++... +...+.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 346999999999999999876666541 122 3456666433 455666555
No 325
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.019 Score=54.63 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++.++|++|+||||++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 326
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.33 E-value=0.0032 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++.|.|++|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 327
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.32 E-value=0.02 Score=54.74 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+.+|.++|++|+||||++..+...+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999988766
No 328
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.32 E-value=0.0058 Score=52.45 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEE
Q 047607 158 GLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV 213 (352)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (352)
.++......++.|. ...++.+.|++|+|||.||....-+. -....|+.++++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 45556667777777 45699999999999999999998776 3458888888875
No 329
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.32 E-value=0.014 Score=56.67 Aligned_cols=86 Identities=23% Similarity=0.295 Sum_probs=50.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES---WSSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (352)
.-.++.|.|.+|+|||||+.++..... ..-..++|++.... ...+.. -+..++...+. ....+.+.+...+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 457999999999999999999988762 22235788876543 333321 23344432211 1123344343333
Q ss_pred HHHhCCCcEEEEEeCCCC
Q 047607 251 FKILSDKKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~~kr~LlVlDdv~~ 268 (352)
. +.+.-++|+|.+..
T Consensus 167 ~---~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 167 E---EENPQACVIDSIQT 181 (454)
T ss_pred H---hcCCcEEEEecchh
Confidence 2 23556899998853
No 330
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.30 E-value=0.0027 Score=54.41 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 331
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.29 E-value=0.03 Score=54.92 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=61.7
Q ss_pred HHHHHHhcC--CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC-----
Q 047607 165 RVWSCVMED--TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES----- 237 (352)
Q Consensus 165 ~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----- 237 (352)
.|-+.|... .-+++.|.|++|+|||||+.++..... .+-..++|++... +...+.... +.++.....
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g 324 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQG 324 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCC
Confidence 344444443 568999999999999999999998772 3335677777655 345554443 445432110
Q ss_pred --------CCCcCHHHHHHHHHHHhCC-CcEEEEEeCCC
Q 047607 238 --------WSSKNVQEKAQEIFKILSD-KKFMLLLDDIW 267 (352)
Q Consensus 238 --------~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 267 (352)
+.....++.+..+.+.+.. +.-++|+|.+.
T Consensus 325 ~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 325 LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 1123346667777777644 55689999985
No 332
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.29 E-value=0.0061 Score=51.54 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=30.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEE
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV 213 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (352)
.+++.|+|+.|+|||||++.+.... ...|...++-+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999988 67776555544
No 333
>PF13245 AAA_19: Part of AAA domain
Probab=96.28 E-value=0.014 Score=41.69 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=18.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45778889999999995555544444
No 334
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.094 Score=48.44 Aligned_cols=51 Identities=25% Similarity=0.270 Sum_probs=38.5
Q ss_pred ccccchHHHHHHHHHHhc--------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCE
Q 047607 155 SVVGLQSTFERVWSCVME--------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDF 208 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~ 208 (352)
++-|-+..++.+.+...= ..++-|.++||+|+|||-||+.+..+. ...|-.
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fIn 157 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANFIN 157 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCcce
Confidence 455667777776665421 146789999999999999999999988 566653
No 335
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.26 E-value=0.029 Score=46.73 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=64.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCE--EEEEEeCCccCHHHHHHHHHHHcCCCCC--CCCCcC-------H
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDF--VIWVVVSKDLQLEKIQECVAEKIGLFNE--SWSSKN-------V 243 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~--~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~-------~ 243 (352)
...|-|++..|.||||.|.-+.-+.. ...+.. +-|+.......-...+..+.-.+..... .+...+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 46888999999999999999988873 333332 2344433233333444332000100000 011111 2
Q ss_pred HHHHHHHHHHhCCCcE-EEEEeCCCCc-----ccccccccCCCCCCCCCcEEEEecCCh
Q 047607 244 QEKAQEIFKILSDKKF-MLLLDDIWEP-----VDLAQVGLPIPSPRSTSSKVVFTSRDF 296 (352)
Q Consensus 244 ~~~~~~l~~~L~~kr~-LlVlDdv~~~-----~~~~~l~~~~~~~~~~gs~IiiTTr~~ 296 (352)
.......++.+...+| |+|||++-.. -+.+++...+... ..+.-||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r-p~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER-PGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC-CCCCEEEEECCCC
Confidence 2233445556655555 9999998532 2223443334333 5667999999975
No 336
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.26 E-value=0.0064 Score=56.50 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=39.6
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+||.++.+..++-.+.+....-+.|.|.+|+|||||++.+..-+
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4589999999888777777767778899999999999999998765
No 337
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.26 E-value=0.0032 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 338
>PRK13947 shikimate kinase; Provisional
Probab=96.26 E-value=0.0038 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 339
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.26 E-value=0.0059 Score=56.84 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=40.9
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.+||.++.+..|...+.+...+-+.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999888888888888899999999999999997765
No 340
>PRK05439 pantothenate kinase; Provisional
Probab=96.25 E-value=0.042 Score=50.40 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999998866
No 341
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.25 E-value=0.0032 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998875
No 342
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.25 E-value=0.032 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.+.|++|+||||+++.+....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999887
No 343
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.25 E-value=0.0081 Score=47.85 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=28.7
Q ss_pred HHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 162 TFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+..++-+.|.. ....++.+.|.-|+||||+++.+....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444444433 234689999999999999999999987
No 344
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.24 E-value=0.011 Score=52.92 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHHhc-------CCcEEEEEEecCCCcHHHHHHHHHHhhc
Q 047607 155 SVVGLQSTFERVWSCVME-------DTIGIVGLYGMGGVGKTTLLTQINNKFL 200 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (352)
.++|..-..+.++..+++ .++-+++.+|.+|+||.-.++.+.+...
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 467777666777777653 2678999999999999999999998874
No 345
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.23 E-value=0.0041 Score=52.20 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998876
No 346
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.0077 Score=49.48 Aligned_cols=126 Identities=22% Similarity=0.210 Sum_probs=63.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
-.+++|+|..|.|||||++.+.... ......+++........ ........++.... -......... +...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q--lS~G~~~r~~-l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ--LSGGQRQRVA-LARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccC--CHHHHHhceEEEee--CCHHHHHHHH-HHHHH
Confidence 4799999999999999999998765 23345555432211110 00111122221100 1111222223 44444
Q ss_pred CCCcEEEEEeCCCCccc---ccccccCCCCCCCCCcEEEEecCChHHHhhccCCceeec
Q 047607 255 SDKKFMLLLDDIWEPVD---LAQVGLPIPSPRSTSSKVVFTSRDFEVCGQMEAHRSFKV 310 (352)
Q Consensus 255 ~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~~~~~~~~l 310 (352)
....-++++|+.-..-+ ...+...+......+..++++|.+....... .++.+.+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 55678899999865422 2222221211102356788888887665543 2344433
No 347
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.23 E-value=0.015 Score=50.54 Aligned_cols=89 Identities=24% Similarity=0.358 Sum_probs=53.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCCC----CCCCcCH-HH---
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-LQLEKIQECVAEKIGLFNE----SWSSKNV-QE--- 245 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~-~~--- 245 (352)
-.-++|.|.+|+|||+|+..+.+.. . -+.++++-+.+. ..+.++..++...-..... .....+. ..
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~---~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ---D--ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC---T--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc---c--ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 3678999999999999999999987 2 334478877654 4555666555443111000 0011111 11
Q ss_pred --HHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 246 --KAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 246 --~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
..-.+-+++ +++.+|+++||+..
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhHH
Confidence 111222333 68999999999843
No 348
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.23 E-value=0.0059 Score=49.99 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=27.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEE
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV 213 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (352)
..+|-|.|.+|+||||||+.+...+. ..-..+.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~---~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF---ARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH---HTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEec
Confidence 46888999999999999999999983 3334455554
No 349
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.22 E-value=0.014 Score=58.54 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=37.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK 230 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 230 (352)
.++..|.|.+|.||||++..+..........-...+.+.....-....+...+...
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 47899999999999999999887763211122346666666665566665555443
No 350
>PRK13949 shikimate kinase; Provisional
Probab=96.22 E-value=0.0041 Score=51.92 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-|.|+|++|+||||+++.+....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999987
No 351
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.22 E-value=0.0018 Score=54.92 Aligned_cols=118 Identities=15% Similarity=0.136 Sum_probs=57.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC-CCcCHHHHHHHHHHHhC
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW-SSKNVQEKAQEIFKILS 255 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~L~ 255 (352)
++.|.|+.|.||||+.+.+.-... ..+-.+.+|..-.. -.....++..++...... .......-..++...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~--la~~G~~v~a~~~~----~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~ 74 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI--MAQIGSFVPAESAE----LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILK 74 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH--HHHhCCCeeehheE----ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHH
Confidence 467999999999999999984321 11111111110000 000011111111111000 11122222334444444
Q ss_pred C--CcEEEEEeCCCCccccc-------ccccCCCCCCCCCcEEEEecCChHHHhhc
Q 047607 256 D--KKFMLLLDDIWEPVDLA-------QVGLPIPSPRSTSSKVVFTSRDFEVCGQM 302 (352)
Q Consensus 256 ~--kr~LlVlDdv~~~~~~~-------~l~~~~~~~~~~gs~IiiTTr~~~v~~~~ 302 (352)
. ++-|+++|+.-...+.. .+...+.. ..++.+|++|...++....
T Consensus 75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~--~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE--KIGALTLFATHYHELTKLA 128 (185)
T ss_pred hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHHHh
Confidence 4 88999999986543221 11112221 1478899999988876654
No 352
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.22 E-value=0.0053 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|.|.|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998876
No 353
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.21 E-value=0.014 Score=55.13 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 162 TFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+.+++.+...+...+.|.|+||.|||+|.+.+.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34556666666677889999999999999999999988
No 354
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.20 E-value=0.024 Score=47.10 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998875
No 355
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.19 E-value=0.0066 Score=58.01 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=36.5
Q ss_pred CCccccchHHHHHHHHHHhcC----------------CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 153 PTSVVGLQSTFERVWSCVMED----------------TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~----------------~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...++|.+..++.+...+.+. ..+.+.++|++|+|||+||+.+....
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 345899999888875554210 23668999999999999999998876
No 356
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.038 Score=55.14 Aligned_cols=164 Identities=13% Similarity=0.019 Sum_probs=84.3
Q ss_pred ccccchHHHHHHHHHHhcC-------------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 155 SVVGLQSTFERVWSCVMED-------------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~-------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
++-|..+..+-|.+.+.-. ...-|.++|++|+|||-||..+..... .-++++-.+
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~--------~~fisvKGP---- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN--------LRFISVKGP---- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC--------eeEEEecCH----
Confidence 3445555555555554321 245688999999999999999988762 334555443
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc-------------cccccccCCC--CCCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV-------------DLAQVGLPIP--SPRSTS 286 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~~~--~~~~~g 286 (352)
+++...-+. +.+.....+.+.-.-++|++.||++++.. ...++...+. .+ -.|
T Consensus 736 ----ElL~KyIGa-------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg-l~G 803 (952)
T KOG0735|consen 736 ----ELLSKYIGA-------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG-LDG 803 (952)
T ss_pred ----HHHHHHhcc-------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc-cce
Confidence 333332111 12222233333334599999999998621 1223322222 12 356
Q ss_pred cEEEEecCChHHHh--hcc---CCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHh
Q 047607 287 SKVVFTSRDFEVCG--QME---AHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQ 342 (352)
Q Consensus 287 s~IiiTTr~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~ 342 (352)
.-|+-.|...++.. .+. -++.+.-+.-++.+-.++|..-.-.-....+.+++-++.
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~ 864 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQ 864 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhh
Confidence 66665444333211 111 233334444555666666665443222223444555543
No 357
>PRK14530 adenylate kinase; Provisional
Probab=96.17 E-value=0.0042 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.|.|+|++|+||||+++.+...+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998877
No 358
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.17 E-value=0.013 Score=54.50 Aligned_cols=63 Identities=25% Similarity=0.271 Sum_probs=48.2
Q ss_pred ccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHH
Q 047607 155 SVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQE 225 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 225 (352)
.++|.++.+..+...+..+ +.+.+.|++|+|||+||+.+.... . ...+++.+.......++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhcC
Confidence 4889888888877766554 578899999999999999999988 3 3345667777666666543
No 359
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.17 E-value=0.0058 Score=48.07 Aligned_cols=27 Identities=41% Similarity=0.519 Sum_probs=19.4
Q ss_pred EEEEecCCCcHHHHHHHHHHhhccCCCCCC
Q 047607 178 VGLYGMGGVGKTTLLTQINNKFLVSPNHFD 207 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~ 207 (352)
+.|+|.+|+||||+|+.+.... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 6799999999999999999987 56664
No 360
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.15 E-value=0.0043 Score=49.87 Aligned_cols=23 Identities=43% Similarity=0.748 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+++|+|++|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 361
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.15 E-value=0.0064 Score=56.40 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=38.2
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.++|.++.++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4689999998888766655555679999999999999999997765
No 362
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.14 E-value=0.0067 Score=54.43 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=58.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC------------------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFN------------------ 235 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------ 235 (352)
..+++.|.|.+|+|||+++.++.... ......++||+.... ...+.....+ ++-..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~ 95 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAFLSE 95 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEccccc
Confidence 56899999999999999999999988 455888999998764 4444444332 21110
Q ss_pred CC------CCCcCHHHHHHHHHHHhCC-CcEEEEEeCCC
Q 047607 236 ES------WSSKNVQEKAQEIFKILSD-KKFMLLLDDIW 267 (352)
Q Consensus 236 ~~------~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 267 (352)
.. ....+...+...+.+..+. +..-+|+|.+-
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 96 KGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred cccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 00 0123445566666666543 46788999986
No 363
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.13 E-value=0.0039 Score=52.88 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 364
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.043 Score=51.51 Aligned_cols=90 Identities=19% Similarity=0.164 Sum_probs=51.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFK 252 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (352)
+.+++.++|+.|+||||++..+..... .+ -..+.++++.... ....-++...+.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 468999999999999999999987662 12 2345666654332 223344555555554321 22344444443433
Q ss_pred Hh-CCCcEEEEEeCCCC
Q 047607 253 IL-SDKKFMLLLDDIWE 268 (352)
Q Consensus 253 ~L-~~kr~LlVlDdv~~ 268 (352)
.- .+..=+|++|-.-.
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 22 13345677777643
No 365
>PRK05973 replicative DNA helicase; Provisional
Probab=96.11 E-value=0.045 Score=48.20 Aligned_cols=145 Identities=12% Similarity=0.058 Sum_probs=75.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---------CCCcCHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES---------WSSKNVQ 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------~~~~~~~ 244 (352)
.-.++.|.|.+|+|||+++.++..... ..-..++|++.... ...+...+. +++..... .......
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~ 136 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICAD 136 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHH
Confidence 347899999999999999999987662 22345677776553 444444432 22322110 0112223
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCcc------cccc----cccCCCCCCCCCcEEEEecCChH-HHhhccCCcee-ecCC
Q 047607 245 EKAQEIFKILSDKKFMLLLDDIWEPV------DLAQ----VGLPIPSPRSTSSKVVFTSRDFE-VCGQMEAHRSF-KVEC 312 (352)
Q Consensus 245 ~~~~~l~~~L~~kr~LlVlDdv~~~~------~~~~----l~~~~~~~~~~gs~IiiTTr~~~-v~~~~~~~~~~-~l~~ 312 (352)
..+..+.. ..+.-++|+|-+.... .... +.. +.. ..|..||+|+.... +....+..... .| .
T Consensus 137 ~ii~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~-~Ak--~~gitvIl~sQl~r~~e~~~~~~P~laDl-R 210 (237)
T PRK05973 137 YIIARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKS-FAR--ERGLIIVFISQIDRSFDPSAKPLPDIRDV-R 210 (237)
T ss_pred HHHHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHH-HHH--hCCCeEEEEecCccccccCCCCCCChhhc-C
Confidence 33333333 1234589999875321 1111 111 111 46788888887432 22211111111 11 2
Q ss_pred CCHHHHHHHHHHhhcccc
Q 047607 313 LAYEDAWELFEEKVGREI 330 (352)
Q Consensus 313 L~~~e~~~Lf~~~~~~~~ 330 (352)
++..--..||.+.+|-.+
T Consensus 211 ~~~~~d~~~f~~~~~~~~ 228 (237)
T PRK05973 211 LPNPLDLSLFDKACFLNN 228 (237)
T ss_pred CCChhhHHHhhhhheecC
Confidence 233444689999887644
No 366
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.11 E-value=0.0068 Score=53.50 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=38.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEE-------eCCccCHHHH--HHHHHHHcCCCC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV-------VSKDLQLEKI--QECVAEKIGLFN 235 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-------~s~~~~~~~~--~~~i~~~l~~~~ 235 (352)
.+.+|.++||+|+||||..+.++.+.. .+...+.++-.. ..-+.++++. .++.+++.+...
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~-~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH-AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh-hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 467889999999999999999999883 222323333221 2223344433 456777765543
No 367
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.11 E-value=0.011 Score=56.35 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----CCCCcCH-H---
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAEKIGLFNE----SWSSKNV-Q--- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~-~--- 244 (352)
.-..++|+|..|+|||||++.+.... ..+.++.+-+.... .+.++...++..-+.... .....+. .
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 44689999999999999999998654 22455556565543 345555555443221100 0011111 1
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 245 --EKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 245 --~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
...-.+.+++ +++.+||++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1222344444 57999999999854
No 368
>PRK15453 phosphoribulokinase; Provisional
Probab=96.11 E-value=0.037 Score=49.78 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=45.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc--cCHHHHHHHHH--HHcCCCCCC--CCCcCHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD--LQLEKIQECVA--EKIGLFNES--WSSKNVQEKA 247 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~--~~l~~~~~~--~~~~~~~~~~ 247 (352)
+..+|+|.|.+|+||||+++.+.+... ..-.....++...- ++....-..+. ..-+.+-+. +...+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 467999999999999999999987662 11112333433222 23222222221 112221112 4667777788
Q ss_pred HHHHHHhCC
Q 047607 248 QEIFKILSD 256 (352)
Q Consensus 248 ~~l~~~L~~ 256 (352)
+.++.+.++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 888877654
No 369
>PRK08149 ATP synthase SpaL; Validated
Probab=96.11 E-value=0.025 Score=54.10 Aligned_cols=90 Identities=14% Similarity=0.208 Sum_probs=51.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHcCCCCC----CCCCcCH-----
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK-DLQLEKIQECVAEKIGLFNE----SWSSKNV----- 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~----- 243 (352)
+-..++|+|.+|+|||||+..+.... ..+.++...+.. ...+..+..+.......... .....+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45688999999999999999998755 123333333332 33555666666554321100 0011111
Q ss_pred -HHHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 244 -QEKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 244 -~~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
......+.+++ +++.+||++||+-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 12233344444 58999999999854
No 370
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.10 E-value=0.99 Score=42.91 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=37.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeC-CccCHHHHHHHHHHHcCCC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS-KDLQLEKIQECVAEKIGLF 234 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~ 234 (352)
.+.+|-.+|.-|+||||-+-.+.+.+. ...+. +.-|++. ..+...+=++.+.++++.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk--k~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK--KKGKK-VLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH--HcCCc-eEEEecccCChHHHHHHHHHHHHcCCc
Confidence 468999999999999999999999883 22222 2222221 1223444466777777543
No 371
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.10 E-value=0.0043 Score=52.21 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+++|+|++|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998865
No 372
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.021 Score=49.40 Aligned_cols=61 Identities=15% Similarity=0.222 Sum_probs=39.3
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccccccccc---CCCCCCCCCcEEEEecCChHHHhhccCCcee
Q 047607 248 QEIFKILSDKKFMLLLDDIWEPVDLAQVGL---PIPSPRSTSSKVVFTSRDFEVCGQMEAHRSF 308 (352)
Q Consensus 248 ~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~---~~~~~~~~gs~IiiTTr~~~v~~~~~~~~~~ 308 (352)
..|.+.+--++-|.|||+.++.-+.+.+.. .+..-...|+-+++.|..+.+.....++.+|
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 444444555677999999998766554321 1111114577788888888888888766554
No 373
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.061 Score=53.28 Aligned_cols=166 Identities=15% Similarity=0.086 Sum_probs=87.7
Q ss_pred CccccchHHHHH---HHHHHhcCC---------cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFER---VWSCVMEDT---------IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.++-|.++..++ +++.|++++ ++-+.++|+||.|||.||+.+.... .-+|- +.|..
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---~VPFf-----~iSGS---- 217 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFF-----SISGS---- 217 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc---CCCce-----eccch----
Confidence 456788766554 566666542 4668899999999999999999887 22221 11111
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc------------c----cccccccCCCCCC--
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP------------V----DLAQVGLPIPSPR-- 283 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~----~~~~l~~~~~~~~-- 283 (352)
+..+.+ ..-......+.+.+..+.-++++++|.++.. + .+.++..- .++.
T Consensus 218 ----~FVemf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvE-mDGF~~ 285 (596)
T COG0465 218 ----DFVEMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE-MDGFGG 285 (596)
T ss_pred ----hhhhhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhh-hccCCC
Confidence 111111 1122223334444555666899999998742 1 12222211 1110
Q ss_pred CCCcEEEEecCChHHHh--hc---cCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 284 STSSKVVFTSRDFEVCG--QM---EAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 284 ~~gs~IiiTTr~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
+.|-.|+-.|...+|.. .+ .-++.+.++...-..-.++++-++-......+-++..|++.
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~ 350 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARG 350 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhh
Confidence 23444444555444421 11 23445556655556666677755544332333445555554
No 374
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.08 E-value=0.037 Score=53.45 Aligned_cols=92 Identities=21% Similarity=0.261 Sum_probs=58.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCCC----CCCCcCH-----
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-LQLEKIQECVAEKIGLFNE----SWSSKNV----- 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~----- 243 (352)
+-.-++|.|.+|+|||||+.++..... ..+-+.++++-+... ....++...+...-..... .....+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 446799999999999999999998873 235677888777654 3455566555543211100 0011111
Q ss_pred -HHHHHHHHHHh---CCCcEEEEEeCCC
Q 047607 244 -QEKAQEIFKIL---SDKKFMLLLDDIW 267 (352)
Q Consensus 244 -~~~~~~l~~~L---~~kr~LlVlDdv~ 267 (352)
....-.+.+++ +++.+|+++|++-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 12233455555 3789999999994
No 375
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.08 E-value=0.0065 Score=50.94 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.|.|++|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999987
No 376
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.07 E-value=0.0062 Score=50.83 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 377
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.07 E-value=0.011 Score=54.67 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=41.6
Q ss_pred CccccchHHHHHHHHHHhc------CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..|+|.++.+++|++.+.. ...+++-++||.|.|||||+..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999864 367999999999999999999998887
No 378
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.06 E-value=0.037 Score=49.61 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=57.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccC-CCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCC-----CCCCcCHH--
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVS-PNHFDFVIWVVVSKDL-QLEKIQECVAEKIGLFNE-----SWSSKNVQ-- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 244 (352)
+-.-++|.|-.|+|||+|+..+.++.... ..+-+.++++-+.+.. ...++..++...-..... ..+.....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 34578999999999999999988776211 2335678888887654 455666555554211110 00111111
Q ss_pred ---HHHHHHHHHh---CCCcEEEEEeCCCC
Q 047607 245 ---EKAQEIFKIL---SDKKFMLLLDDIWE 268 (352)
Q Consensus 245 ---~~~~~l~~~L---~~kr~LlVlDdv~~ 268 (352)
...-.+.+++ +++++|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1223345555 26889999999854
No 379
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.051 Score=51.97 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+++++|+.|+||||++..+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999887654
No 380
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.05 E-value=0.0053 Score=50.07 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|.++|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 381
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.04 E-value=0.0042 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|.++|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 382
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.04 E-value=0.007 Score=51.35 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcC
Q 047607 163 FERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKN 242 (352)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 242 (352)
...++...... ...+.|+|+.|+|||||++.+.... ..... .+.+ ........-.... .++...........
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~~~i---~~~~~-~i~i--ed~~E~~~~~~~~-~~~~~~~~~~~~~~ 85 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAFI---PPDER-IITI--EDTAELQLPHPNW-VRLVTRPGNVEGSG 85 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHHhhc---CCCCC-EEEE--CCccccCCCCCCE-EEEEEecCCCCCCC
Confidence 33444443333 4689999999999999999998766 22222 2222 1110000000000 00000000001111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCccccccc
Q 047607 243 VQEKAQEIFKILSDKKFMLLLDDIWEPVDLAQV 275 (352)
Q Consensus 243 ~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l 275 (352)
.......++..++..+=.++++++.+.+.+.-+
T Consensus 86 ~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 86 EVTMADLLRSALRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred ccCHHHHHHHHhccCCCEEEEEccCcHHHHHHH
Confidence 223445566667777788899999887766543
No 383
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.03 E-value=0.031 Score=50.07 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=50.6
Q ss_pred CcEEEEEEecCCCcHHHHH-HHHHHhhccCCCCCCEE-EEEEeCCc-cCHHHHHHHHHHHcCCCCC----CCCCcC-HHH
Q 047607 174 TIGIVGLYGMGGVGKTTLL-TQINNKFLVSPNHFDFV-IWVVVSKD-LQLEKIQECVAEKIGLFNE----SWSSKN-VQE 245 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~-~~~ 245 (352)
+-.-++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+... ....++...+...-..... .....+ ...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3467899999999999996 5555543 23333 66666554 3455666665543211100 001111 111
Q ss_pred -----HHHHHHHHh--CCCcEEEEEeCCCCc
Q 047607 246 -----KAQEIFKIL--SDKKFMLLLDDIWEP 269 (352)
Q Consensus 246 -----~~~~l~~~L--~~kr~LlVlDdv~~~ 269 (352)
..-.+.+++ +++.+|+++||+-..
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 122233333 578999999999653
No 384
>PRK06851 hypothetical protein; Provisional
Probab=96.03 E-value=0.22 Score=46.77 Aligned_cols=54 Identities=22% Similarity=0.208 Sum_probs=37.3
Q ss_pred cchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc
Q 047607 158 GLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD 217 (352)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 217 (352)
|.-...+.+. ++-.+++.|.|++|+|||||++.++.... ...++..++=|.+.+
T Consensus 201 G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 201 GAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred cHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 4444444444 34468899999999999999999999883 455665555444333
No 385
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.02 E-value=0.0077 Score=52.06 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=26.6
Q ss_pred HhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 170 VMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 170 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+...++++|+++|+.|+|||||...+....
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 444689999999999999999999999876
No 386
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.0083 Score=52.20 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|.+|+|||||++.+.--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45789999999999999999997644
No 387
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.01 E-value=0.0053 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|+|+|++|+|||||++.+....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 388
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.00 E-value=0.034 Score=53.11 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=51.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC-----CCCCcCHHH---
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE-----SWSSKNVQE--- 245 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~--- 245 (352)
.-..++|+|..|+|||||++.+.... . ....++.....+...+.++....+..-+.... ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 44689999999999999998888765 2 22233333333344455555554443221110 001111111
Q ss_pred --HHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 246 --KAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 246 --~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
..-.+.+++ +++.+||++||+-.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 222344555 57899999999854
No 389
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.98 E-value=0.049 Score=52.52 Aligned_cols=93 Identities=19% Similarity=0.315 Sum_probs=56.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----CCCCcCH-H---
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAEKIGLFNE----SWSSKNV-Q--- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~-~--- 244 (352)
.-.-++|.|.+|+|||||+.++..... .++-+.++++-+.... .+.++..++...-..... .....+. .
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346789999999999999999887762 2223567777775543 455666666553221100 0011111 1
Q ss_pred --HHHHHHHHHh---CCCcEEEEEeCCCC
Q 047607 245 --EKAQEIFKIL---SDKKFMLLLDDIWE 268 (352)
Q Consensus 245 --~~~~~l~~~L---~~kr~LlVlDdv~~ 268 (352)
...-.+-+++ +++.+||++|++-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1233355555 67899999999853
No 390
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.97 E-value=0.006 Score=47.31 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|.|+|.+|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999876
No 391
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.97 E-value=0.0083 Score=50.64 Aligned_cols=44 Identities=27% Similarity=0.209 Sum_probs=31.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHH
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQE 225 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 225 (352)
++.|.|++|+|||+|+.++..... ..=..++|++... +...+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~ 44 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIE 44 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHH
Confidence 367999999999999999988762 2234577887654 3444443
No 392
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.012 Score=47.28 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=63.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
.+-|.|.|-||+|||||+..+.... . .-|+++|+-..-..+....=+.. .....+.+.+.+.|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y-----~c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEY-----KCHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhcccccc-----cCccccHHHHHHHHHHHH
Confidence 4668999999999999999998654 1 34666554322111111000000 112345566777777666
Q ss_pred CCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHhhccCCceeecCCCCHHHHHHHH
Q 047607 255 SDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCGQMEAHRSFKVECLAYEDAWELF 322 (352)
Q Consensus 255 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~~~~~~~~l~~L~~~e~~~Lf 322 (352)
....+++ +|+.. ..||.. --.--+++||-+..+..++.+ +.|.-..+.+..-.++|
T Consensus 74 ~~Gg~IV---------DyHgC-d~Fper-wfdlVvVLr~~~s~LY~RL~s-RgY~e~Ki~eNiecEIf 129 (176)
T KOG3347|consen 74 IEGGNIV---------DYHGC-DFFPER-WFDLVVVLRTPNSVLYDRLKS-RGYSEKKIKENIECEIF 129 (176)
T ss_pred hcCCcEE---------eeccc-Cccchh-heeEEEEEecCchHHHHHHHH-cCCCHHHHhhhcchHHH
Confidence 5443322 22221 223332 223456777777777666642 23433444443333343
No 393
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.97 E-value=0.013 Score=50.11 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=33.0
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
++++|.+..+..+.-+... ..-+.++|++|+|||+||+.+-.-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 4678998888777665554 4789999999999999999997654
No 394
>PRK05922 type III secretion system ATPase; Validated
Probab=95.96 E-value=0.031 Score=53.48 Aligned_cols=90 Identities=14% Similarity=0.231 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHcCCCCC----CCCCc-CHH---
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK-DLQLEKIQECVAEKIGLFNE----SWSSK-NVQ--- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~----~~~~~-~~~--- 244 (352)
+-..++|+|..|+|||||.+.+.... ..+...++-++. .......+.+.......... ..... ...
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 44679999999999999999998765 123333333333 23344555454443322110 00111 111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 245 --EKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 245 --~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
...-.+.+++ +++.+|+++||+-.
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223344555 57999999999854
No 395
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.95 E-value=0.038 Score=51.00 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=51.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeC-CccCHHHHHHHHHHHcCCCCC----CCCCc-CHH---
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS-KDLQLEKIQECVAEKIGLFNE----SWSSK-NVQ--- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~----~~~~~-~~~--- 244 (352)
.-..++|+|..|+|||||.+.+.... . .+..+..-+. ....+..+.......-+.... ..... ...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~---~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT---T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 34678999999999999999988765 2 2233333333 334556655555544321110 00111 111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 245 --EKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 245 --~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
...-.+.+++ +++.+||++||+-.
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1222333444 57899999999754
No 396
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.95 E-value=0.047 Score=53.00 Aligned_cols=94 Identities=12% Similarity=0.103 Sum_probs=54.0
Q ss_pred CcEEEEEEecCCCcHHHHH-HHHHHhhccC-----CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC-----CCCCcC
Q 047607 174 TIGIVGLYGMGGVGKTTLL-TQINNKFLVS-----PNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE-----SWSSKN 242 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~ 242 (352)
.-.-++|.|..|+|||+|| -.+.++. .+ ..+-+.++++-+.+..+-..-+...+..-+.-.. .....+
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 3467899999999999996 6666664 11 1244678888888765433324444444331100 001111
Q ss_pred H-HH-----HHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 243 V-QE-----KAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 243 ~-~~-----~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
. .. ..-.+-+++ +++.+|+|+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 11 122333444 57899999999964
No 397
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.94 E-value=0.0073 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..|.++||.|+||||+.+.+.+.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc
Confidence 458899999999999999999988
No 398
>PRK14526 adenylate kinase; Provisional
Probab=95.93 E-value=0.0091 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.|+|++|+||||+++.+...+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998765
No 399
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.92 E-value=0.006 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++.|+|++|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997765
No 400
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.92 E-value=0.072 Score=47.93 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=34.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
-.++.|.|++|+||||++.++..... ..+-..++|++.... ..++...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~ 79 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLL 79 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHH
Confidence 46888999999999999999988762 222346888887553 344444443
No 401
>PRK13948 shikimate kinase; Provisional
Probab=95.91 E-value=0.0076 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....|.++|+.|+||||+++.+....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999887
No 402
>PLN02200 adenylate kinase family protein
Probab=95.90 E-value=0.0078 Score=53.09 Aligned_cols=26 Identities=35% Similarity=0.280 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+.+|.|.|++|+||||+|+.+...+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998876
No 403
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.90 E-value=0.037 Score=53.06 Aligned_cols=90 Identities=17% Similarity=0.221 Sum_probs=52.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----CCCCcC-HH---
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAEKIGLFNE----SWSSKN-VQ--- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~-~~--- 244 (352)
+-..++|+|..|+|||||++.++... . .+.++++-+.... .+.++....+..-+.... .....+ ..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~---~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA---D--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc---C--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45788999999999999999998765 1 2345555554433 344554444433221100 001111 11
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 245 --EKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 245 --~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
...-.+-+++ +++.+|+++||+-.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1222344444 57899999999854
No 404
>PRK13975 thymidylate kinase; Provisional
Probab=95.89 E-value=0.0074 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..|.|.|+.|+||||+++.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999988
No 405
>PHA02774 E1; Provisional
Probab=95.89 E-value=0.018 Score=56.51 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcC-CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeC
Q 047607 161 STFERVWSCVMED-TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 215 (352)
Q Consensus 161 ~~~~~l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 215 (352)
..+..|..+|... +...+.|+|++|.|||.+|-.+.+-. . ...+.||+..
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L---~--G~vi~fvN~~ 469 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL---K--GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh---C--CCEEEEEECc
Confidence 3445566666543 45789999999999999999999887 1 3345677653
No 406
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.89 E-value=0.0073 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|.|+|+.|+|||||++.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3569999999999999999999876
No 407
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.87 E-value=0.0082 Score=51.43 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|++|+||||+|+.+..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999876
No 408
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.86 E-value=0.008 Score=51.05 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998865
No 409
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.85 E-value=0.0092 Score=51.18 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=24.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+..++.|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999876
No 410
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.84 E-value=0.031 Score=47.33 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=63.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC--EEEEEEeCCccCHHHHHHHHH--HHcCCCC-CCCCCcC------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD--FVIWVVVSKDLQLEKIQECVA--EKIGLFN-ESWSSKN------ 242 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~--~~l~~~~-~~~~~~~------ 242 (352)
+...|.|+|..|-||||.|.-+.-+.. ...+. .+-|..-.....-...+..+- ....... ..+...+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV--GHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 457899999999999999999988772 22222 222232222223333333210 0000000 0011111
Q ss_pred -HHHHHHHHHHHhCCCcE-EEEEeCCCCc-----ccccccccCCCCCCCCCcEEEEecCCh
Q 047607 243 -VQEKAQEIFKILSDKKF-MLLLDDIWEP-----VDLAQVGLPIPSPRSTSSKVVFTSRDF 296 (352)
Q Consensus 243 -~~~~~~~l~~~L~~kr~-LlVlDdv~~~-----~~~~~l~~~~~~~~~~gs~IiiTTr~~ 296 (352)
........++.+...+| |+|||++-.. -+.+++...+... ..+.-||+|=|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r-p~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR-PGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC-CCCCEEEEECCCC
Confidence 12233445556655554 9999998543 2233443444433 5667999999975
No 411
>PHA02244 ATPase-like protein
Probab=95.84 E-value=0.021 Score=53.24 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=30.2
Q ss_pred CccccchHHHH----HHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFE----RVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~----~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|...... .+..++..+ ..+.|+|++|+|||+||+.++...
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh
Confidence 34566544443 344444333 346789999999999999999886
No 412
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.84 E-value=0.023 Score=54.62 Aligned_cols=93 Identities=25% Similarity=0.353 Sum_probs=57.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----CCCCcCH-----
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAEKIGLFNE----SWSSKNV----- 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~----- 243 (352)
+-.-++|.|.+|+|||+|+.++..... ..+-+.++|+-+.... ...++..++...-..... .....+.
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 346789999999999999999988762 2334788888876644 455556555543211100 0011111
Q ss_pred -HHHHHHHHHHh---CCCcEEEEEeCCCC
Q 047607 244 -QEKAQEIFKIL---SDKKFMLLLDDIWE 268 (352)
Q Consensus 244 -~~~~~~l~~~L---~~kr~LlVlDdv~~ 268 (352)
....-.+.+++ +++.+|+++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 12233455565 35899999999854
No 413
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.84 E-value=0.047 Score=53.05 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+++++|+.|+||||++..+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4799999999999999999998876
No 414
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.83 E-value=0.0075 Score=50.29 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHHHhhc
Q 047607 178 VGLYGMGGVGKTTLLTQINNKFL 200 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~ 200 (352)
|.|.|.+|+|||||++.+++...
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999873
No 415
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.82 E-value=0.022 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999988
No 416
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.81 E-value=0.052 Score=50.44 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=35.9
Q ss_pred CCccccchHHHHH---HHHHHhcCC--cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 153 PTSVVGLQSTFER---VWSCVMEDT--IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 153 ~~~~vGr~~~~~~---l~~~L~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-+||+.+..+. +++++.+.+ -+.+.+.|++|.|||+||..+...+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 3568999877665 567777664 5899999999999999999999998
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.81 E-value=0.09 Score=54.44 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
+..++.|.|+.|.|||||.+.+.-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 4579999999999999999999765
No 418
>PRK13946 shikimate kinase; Provisional
Probab=95.81 E-value=0.0088 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+.|.+.|++|+||||+++.+....
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999987
No 419
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.81 E-value=0.011 Score=48.53 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=26.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEE
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV 213 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (352)
+++|+|+.|+|||||+..+..... ...+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~--~~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK--ARGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEec
Confidence 578999999999999999999883 33455444443
No 420
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.032 Score=48.26 Aligned_cols=123 Identities=15% Similarity=0.083 Sum_probs=68.5
Q ss_pred HHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC-CCC-------
Q 047607 166 VWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLF-NES------- 237 (352)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-~~~------- 237 (352)
++..|.++......|.|+||+|||||.+.+..-.......|.+.--.-+.... +|+-.+... ...
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers-------EIag~~~gvpq~~~g~R~dV 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS-------EIAGCLNGVPQHGRGRRMDV 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc-------hhhccccCCchhhhhhhhhh
Confidence 66667777778889999999999999999988773333455432222221111 122211100 000
Q ss_pred CC-CcCHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHhhc
Q 047607 238 WS-SKNVQEKAQEIFKILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCGQM 302 (352)
Q Consensus 238 ~~-~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~ 302 (352)
.+ -...+-+...++. ..+=.+|+|++-..++-..+...+ ..|.+++.|..-..+...+
T Consensus 201 ld~cpk~~gmmmaIrs---m~PEViIvDEIGt~~d~~A~~ta~----~~GVkli~TaHG~~iedl~ 259 (308)
T COG3854 201 LDPCPKAEGMMMAIRS---MSPEVIIVDEIGTEEDALAILTAL----HAGVKLITTAHGNGIEDLI 259 (308)
T ss_pred cccchHHHHHHHHHHh---cCCcEEEEeccccHHHHHHHHHHH----hcCcEEEEeeccccHHHhh
Confidence 00 0111222222332 356689999998876655554442 4678888887665555443
No 421
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.80 E-value=0.023 Score=52.13 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=43.0
Q ss_pred CCccccchHHHHH---HHHHHhcC--CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC
Q 047607 153 PTSVVGLQSTFER---VWSCVMED--TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD 207 (352)
Q Consensus 153 ~~~~vGr~~~~~~---l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~ 207 (352)
..-+||..+..+. +++++.+. .-+.|.++|++|.|||.||-.+...+ ...-+|.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCce
Confidence 4568998877664 67777766 35789999999999999999999998 4455664
No 422
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.79 E-value=0.013 Score=57.71 Aligned_cols=54 Identities=26% Similarity=0.356 Sum_probs=41.3
Q ss_pred ccccchHHHHHHHHHHhcC-----CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEE
Q 047607 155 SVVGLQSTFERVWSCVMED-----TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV 213 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (352)
++.-..+-++++..||... ..+++.+.||+|+||||.++.+++.. .|+..=|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 3444566778888888652 35799999999999999999999876 356666764
No 423
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.76 E-value=0.04 Score=52.95 Aligned_cols=93 Identities=18% Similarity=0.303 Sum_probs=57.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCCC----CCCCcC-HH---
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-LQLEKIQECVAEKIGLFNE----SWSSKN-VQ--- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~-~~--- 244 (352)
+-.-++|.|.+|+|||||+.++..... .++-..++++-+... ..+.++..++...-..... .....+ ..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446789999999999999999988762 233457777777554 3456666666543211100 001221 11
Q ss_pred --HHHHHHHHHh---CCCcEEEEEeCCCC
Q 047607 245 --EKAQEIFKIL---SDKKFMLLLDDIWE 268 (352)
Q Consensus 245 --~~~~~l~~~L---~~kr~LlVlDdv~~ 268 (352)
...-.+.+++ +++.+||++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1233455666 46899999999854
No 424
>PRK14532 adenylate kinase; Provisional
Probab=95.75 E-value=0.0078 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|.+.|++|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999998876
No 425
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.75 E-value=0.0094 Score=45.48 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=20.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQIN 196 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~ 196 (352)
-..++|+|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4789999999999999999976
No 426
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.73 E-value=0.043 Score=52.71 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=52.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC----CCCCcC-HH----
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE----SWSSKN-VQ---- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~-~~---- 244 (352)
+-..++|.|..|+|||||++.+.... .. -..+++..-.+...+.++...+...-+.... .....+ ..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~---~~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT---QC-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CC-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 45789999999999999999998765 11 1244444444444555555555443221110 001111 11
Q ss_pred -HHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 245 -EKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 245 -~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
...-.+-+++ +++.+|+++||+-.
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223344444 57899999999854
No 427
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.72 E-value=0.013 Score=51.78 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=22.4
Q ss_pred EEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEe
Q 047607 180 LYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV 214 (352)
Q Consensus 180 I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 214 (352)
|+||+|+||||+++.+.+.. ...-..++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~---~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL---ESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH---TTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHH---HhccCCceEEEc
Confidence 68999999999999999988 333334555553
No 428
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.72 E-value=0.022 Score=49.37 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|+|+|-||+||||+|..+....
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 58999999999999999977666
No 429
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.72 E-value=0.071 Score=44.45 Aligned_cols=81 Identities=16% Similarity=0.266 Sum_probs=45.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCC
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSD 256 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 256 (352)
++.|.|.+|+|||++|.++.... ....+|+.....++.+ +...|..........+... +....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~---E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTI---ETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEe---ecHHHHHHHHHh
Confidence 36799999999999999997652 2356677666665542 3333333222222222222 222333333321
Q ss_pred --CcEEEEEeCCC
Q 047607 257 --KKFMLLLDDIW 267 (352)
Q Consensus 257 --kr~LlVlDdv~ 267 (352)
+.-.+++|.+-
T Consensus 71 ~~~~~~VLIDclt 83 (169)
T cd00544 71 LDPGDVVLIDCLT 83 (169)
T ss_pred cCCCCEEEEEcHh
Confidence 23378999873
No 430
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.70 E-value=0.049 Score=52.47 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=50.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH------cCCCCCCCCCcCH---
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK------IGLFNESWSSKNV--- 243 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~------l~~~~~~~~~~~~--- 243 (352)
..-..++|+|..|+|||||++.+.... .. -...+++.-.+.....++....+.. +...... +....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~---~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~-~~~~~~r~ 230 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT---SA-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS-DQPALMRI 230 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc---CC-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC-CCCHHHHH
Confidence 356789999999999999999888765 11 2245554433443455443332221 1100000 11111
Q ss_pred --HHHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 244 --QEKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 244 --~~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
....-.+.+++ +++.+||++||+-.
T Consensus 231 ~~~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 231 KGAYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 12223344444 57899999999853
No 431
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.70 E-value=0.018 Score=54.85 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=36.7
Q ss_pred CCccccchHHHHHHHHHHh-------c---C--------CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 153 PTSVVGLQSTFERVWSCVM-------E---D--------TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~-------~---~--------~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...++|.++.++.+...+. . . ....+.++|++|+|||+||+.+....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4568999999988865552 1 1 13579999999999999999999776
No 432
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.69 E-value=0.01 Score=51.83 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=61.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC-CCcCHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW-SSKNVQEKAQEIFK 252 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 252 (352)
...++.|.|+.|.||||+.+.+.-... ..+-.+..|..-.+- .....|+..++..+... .......-..++..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~--la~~G~~v~a~~~~~----~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITI--MAQIGSFVPASSATL----SIFDSVLTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--HHhCCCEEEcCceEE----eccceEEEEecCccccccccchHHHHHHHHHH
Confidence 346889999999999999999987321 111122222210000 00111111121111100 11222223334444
Q ss_pred HhC--CCcEEEEEeCCCCccc-c------cccccCCCCCCCCCcEEEEecCChHHHhhc
Q 047607 253 ILS--DKKFMLLLDDIWEPVD-L------AQVGLPIPSPRSTSSKVVFTSRDFEVCGQM 302 (352)
Q Consensus 253 ~L~--~kr~LlVlDdv~~~~~-~------~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~ 302 (352)
.++ +++.|++||+.-...+ . ..+...+.. ..++.+|++|...+++...
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~--~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE--EKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh--ccCCeEEEEcccHHHHHHH
Confidence 443 5789999999854321 0 112222322 2478999999998886554
No 433
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.69 E-value=0.043 Score=48.94 Aligned_cols=79 Identities=13% Similarity=0.065 Sum_probs=44.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHc--CCCCC--CCCCcCHHHHHHHH
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL--QLEKIQECVAEKI--GLFNE--SWSSKNVQEKAQEI 250 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l--~~~~~--~~~~~~~~~~~~~l 250 (352)
+|+|.|.+|+||||+++.+..... ... ..+..++...-. +-...-..+.... +.+-+ .+...+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~-~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA-REG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH-hcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 589999999999999999988762 111 123334322211 2222222222221 11111 24667778788888
Q ss_pred HHHhCCCc
Q 047607 251 FKILSDKK 258 (352)
Q Consensus 251 ~~~L~~kr 258 (352)
+.+.+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 88776654
No 434
>PRK04182 cytidylate kinase; Provisional
Probab=95.68 E-value=0.0095 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|.|.|++|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999887
No 435
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.68 E-value=0.045 Score=52.65 Aligned_cols=40 Identities=30% Similarity=0.408 Sum_probs=27.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeC
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 215 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 215 (352)
.+++.++|++|+||||++..+.... ........+..++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECC
Confidence 3689999999999999998887766 101222345566654
No 436
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.68 E-value=0.02 Score=49.00 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 163 FERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+.+..+..++-++..|.|++|+||||+++.+....
T Consensus 6 Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 6 QREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 3344444545556789999999999999999998877
No 437
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.0094 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=23.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|+|-||=|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4789999999999999999999998
No 438
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.68 E-value=0.034 Score=51.14 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=41.8
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKI 223 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 223 (352)
+.++=..+....++.++..+ +.|.|.|++|+||||+|+.+.... ... .+.|+++...+..++
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhhc
Confidence 34444445556677777543 569999999999999999999988 322 235565555554443
No 439
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.68 E-value=0.087 Score=46.48 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=33.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECV 227 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 227 (352)
-.++.|.|.+|+|||+++.++..+.. ..+=..++|++... +...+...+
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~--~~~~~~~r~ 61 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIA--KKQGKPVLFFSLEM--SKEQLLQRL 61 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCC--CHHHHHHHH
Confidence 46899999999999999999987762 22234577777544 334444443
No 440
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.67 E-value=0.09 Score=48.58 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+..+++++|++|+||||++..+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 441
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.64 E-value=0.048 Score=45.55 Aligned_cols=82 Identities=11% Similarity=0.141 Sum_probs=44.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCc-CHHHHHHHHHHHhC
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSK-NVQEKAQEIFKILS 255 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~l~~~L~ 255 (352)
++.|.|.+|+||||+|..+.... .. ..+++..... ...+....|..........+... ....+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~---~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GL---QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CC---CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 68999999999999999998775 11 2334443333 33344455544433222222221 11123333443333
Q ss_pred CCcEEEEEeCC
Q 047607 256 DKKFMLLLDDI 266 (352)
Q Consensus 256 ~kr~LlVlDdv 266 (352)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 2 337888886
No 442
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.64 E-value=0.039 Score=52.85 Aligned_cols=90 Identities=20% Similarity=0.274 Sum_probs=51.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHcCCCC-----CCCCCcCHHH--
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK-DLQLEKIQECVAEKIGLFN-----ESWSSKNVQE-- 245 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 245 (352)
.-..++|+|..|+|||||++.+.+.. +.+..++..+.. ...+.+++.+....-.... ...+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 45689999999999999999887755 234445555444 3444455555433110000 0001111111
Q ss_pred ---HHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 246 ---KAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 246 ---~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
....+-+++ +++++||++||+-.
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 122344444 57899999999853
No 443
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.64 E-value=0.011 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
....+.|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5688999999999999999999754
No 444
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.0093 Score=52.19 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+--.++|+|++|+|||||.+.+.--.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997644
No 445
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.64 E-value=0.0088 Score=49.30 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 047607 177 IVGLYGMGGVGKTTLLTQIN 196 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~ 196 (352)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 446
>PLN02165 adenylate isopentenyltransferase
Probab=95.63 E-value=0.011 Score=54.42 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.4
Q ss_pred HHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 169 CVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 169 ~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+.+....+++|+|+.|+||||||..+....
T Consensus 37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 3455566799999999999999999998886
No 447
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.62 E-value=0.0098 Score=49.21 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=17.6
Q ss_pred EEEEecCCCcHHHHHHHHHHh
Q 047607 178 VGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~ 198 (352)
|+|.|.+|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999876
No 448
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.62 E-value=0.052 Score=52.04 Aligned_cols=90 Identities=21% Similarity=0.271 Sum_probs=48.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHcCCC-------C-CC--CCCcC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK-DLQLEKIQECVAEKIGLF-------N-ES--WSSKN 242 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~-~~--~~~~~ 242 (352)
+-..++|+|..|+|||||++.+.... . .+..+...+.. .....++....+..-+.. . +. .....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~---~--~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT---Q--ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc---C--CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 45789999999999999999887755 1 12222222222 223333333333332211 0 00 00111
Q ss_pred HHHHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 243 VQEKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 243 ~~~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
....+..+.+++ +++.+||++||+-.
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchhH
Confidence 222333444444 57899999999854
No 449
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.62 E-value=0.031 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=22.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 450
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.61 E-value=0.054 Score=46.70 Aligned_cols=119 Identities=16% Similarity=0.116 Sum_probs=60.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccC-CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC-CCcCHHHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVS-PNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW-SSKNVQEKAQEIFK 252 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 252 (352)
..++.|.|+.|.||||+.+.+..-.... -..| +.+.. .. -.+...|...++...... .......-..++..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~ 101 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----VPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAY 101 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----cchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHH
Confidence 4789999999999999999886433100 1112 11110 01 122233333333221100 00111111112222
Q ss_pred Hh--CCCcEEEEEeCCCCcccc-------cccccCCCCCCCCCcEEEEecCChHHHhhcc
Q 047607 253 IL--SDKKFMLLLDDIWEPVDL-------AQVGLPIPSPRSTSSKVVFTSRDFEVCGQME 303 (352)
Q Consensus 253 ~L--~~kr~LlVlDdv~~~~~~-------~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~~ 303 (352)
.+ ..++-|+++|+.....+. ..+...+. ..++.+|++|...+++..+.
T Consensus 102 il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~---~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 102 ILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI---KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH---hcCCEEEEECChHHHHHHhh
Confidence 22 356789999998543211 12222222 24789999999998877654
No 451
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.60 E-value=0.0086 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.++|++|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999887
No 452
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.60 E-value=0.019 Score=57.22 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=37.1
Q ss_pred CCccccchHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 153 PTSVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|..+.|.+..+.|.+.... .+..+|.++|++|+||||+|+.+....
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 45667888777766665533 245689999999999999999999988
No 453
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.59 E-value=0.015 Score=47.92 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 161 STFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.+++|.+.|.+ +++.++|..|+|||||...+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 346777777764 799999999999999999998875
No 454
>PRK06761 hypothetical protein; Provisional
Probab=95.58 E-value=0.024 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
++|.|.|++|+||||+++.+....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999988
No 455
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.56 E-value=0.0087 Score=51.36 Aligned_cols=88 Identities=11% Similarity=0.199 Sum_probs=44.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC----ccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHH
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK----DLQLEKIQECVAEKIGLFNESWSSKNVQEKAQ 248 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~----~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 248 (352)
.++.++.+.|.+|+||||++..+.... . ....+.++... -+....+.. .-..............+..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~---~--~~~~v~i~~D~~r~~~p~~~~~~~----~~~~~~~~~~~~~a~~~~~ 83 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF---G--GGGIVVIDADEFRQFHPDYDELLK----ADPDEASELTQKEASRLAE 83 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT------TT-SEEE-GGGGGGGSTTHHHHHH----HHCCCTHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc---c--CCCeEEEehHHHHHhccchhhhhh----hhhhhhHHHHHHHHHHHHH
Confidence 467889999999999999999998876 1 34455555322 112222222 1100000001122333455
Q ss_pred HHHHHhCCCcEEEEEeCCCCc
Q 047607 249 EIFKILSDKKFMLLLDDIWEP 269 (352)
Q Consensus 249 ~l~~~L~~kr~LlVlDdv~~~ 269 (352)
.+.+..-.+++=||+|..-..
T Consensus 84 ~~~~~a~~~~~nii~E~tl~~ 104 (199)
T PF06414_consen 84 KLIEYAIENRYNIIFEGTLSN 104 (199)
T ss_dssp HHHHHHHHCT--EEEE--TTS
T ss_pred HHHHHHHHcCCCEEEecCCCC
Confidence 556665667778888987654
No 456
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.56 E-value=0.041 Score=46.12 Aligned_cols=64 Identities=17% Similarity=0.027 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCcEEEEEEecCCCcHHH-HHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHc
Q 047607 164 ERVWSCVMEDTIGIVGLYGMGGVGKTT-LLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKI 231 (352)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 231 (352)
.+++..+.+.. ..+.|.|+.|+|||+ ++..++.... ...-..++++.. ...........+...+
T Consensus 14 ~~~~~~~~~~~-~~~~i~~~~GsGKT~~~~~~~~~~~~--~~~~~~~l~~~p-~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 14 KEAIEALLSGL-RDVILAAPTGSGKTLAALLPALEALK--RGKGKRVLVLVP-TRELAEQWAEELKKLG 78 (201)
T ss_pred HHHHHHHHcCC-CcEEEECCCCCchhHHHHHHHHHHhc--ccCCCcEEEEeC-CHHHHHHHHHHHHHHh
Confidence 34444444332 788999999999999 5555555541 111234555543 2223334444444443
No 457
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.52 E-value=0.021 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....|.++|++|+||||+++.+....
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998876
No 458
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.52 E-value=0.028 Score=46.96 Aligned_cols=42 Identities=24% Similarity=0.164 Sum_probs=34.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCC-CCCCEEEEEEeCCccC
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSP-NHFDFVIWVVVSKDLQ 219 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~ 219 (352)
..++.+.|+.|+|||.||+.+.... . ......+-++++....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 4678999999999999999999998 4 5566777777766544
No 459
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.13 Score=52.62 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+++++|+.|+||||++..+...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999988888766
No 460
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.50 E-value=0.068 Score=45.12 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....++.|.|.+|+||||+|+.+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999887
No 461
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.49 E-value=0.044 Score=55.27 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+-..++|+|..|+|||||++.+...+
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45789999999999999999998765
No 462
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.49 E-value=0.012 Score=49.05 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..|.|+|++|+||||+++.+....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999887
No 463
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.48 E-value=0.011 Score=48.17 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEecCCCcHHHHHHHHHHhh
Q 047607 180 LYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 180 I~G~~GiGKTtLa~~v~~~~ 199 (352)
|+|+||+||||+|+.+...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999987
No 464
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.48 E-value=0.071 Score=48.39 Aligned_cols=60 Identities=32% Similarity=0.356 Sum_probs=39.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCCC-------CEEEEEEeCCc-cCHHHHHHHHHHHcCCCC
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHF-------DFVIWVVVSKD-LQLEKIQECVAEKIGLFN 235 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~ 235 (352)
.+..|+|.+|+|||||+-..+-.....++.| ..+++|++... .++..=++.+..+++++.
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 4455669999999999988876553323333 36788887543 244455667777777653
No 465
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.47 E-value=0.054 Score=52.08 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=51.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCCC-----CCCCcCHH---
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-LQLEKIQECVAEKIGLFNE-----SWSSKNVQ--- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 244 (352)
.-..++|+|..|+|||||++.+.... ..+.++...+... .....+...+...-+.... ..+.....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 34679999999999999999887654 1234444434332 2455555555444222110 00111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 245 --EKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 245 --~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
.....+-+++ +++.+||++||+-.
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 1222344444 57899999999854
No 466
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.47 E-value=0.054 Score=51.74 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=50.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCCC----CCCCc-CHH---
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-LQLEKIQECVAEKIGLFNE----SWSSK-NVQ--- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~-~~~--- 244 (352)
+-..++|+|..|+|||||++.+.... . .+..+...+... ..+.++...+...-..... ..... ...
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~---~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT---E--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC---C--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 44679999999999999999888755 1 233344444443 3344444444433111100 00111 111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 245 --EKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 245 --~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
...-.+.+++ +++.+||++||+-.
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1222334444 57899999999853
No 467
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.47 E-value=0.011 Score=47.07 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-.+++|+|..|+|||||.+.+....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 4689999999999999999998766
No 468
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.46 E-value=0.013 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|.+.|++|+||||+|+.+..+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998765
No 469
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.46 E-value=0.056 Score=47.03 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 047607 176 GIVGLYGMGGVGKTTLLTQINN 197 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (352)
.++.|.|+.|.||||+.+.+.-
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 470
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.45 E-value=0.04 Score=51.04 Aligned_cols=36 Identities=19% Similarity=0.468 Sum_probs=29.1
Q ss_pred HHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 164 ERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 164 ~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|.+.+.. .+..+|+|.|++|+|||||+..+....
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555543 467899999999999999999988887
No 471
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.45 E-value=0.097 Score=51.80 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=55.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC-------------CCCC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE-------------SWSS 240 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------~~~~ 240 (352)
.-.++.|.|.+|+|||+|+.++.... ...-..++|++.... ...+.... .+++..-. .+..
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 45788999999999999999998776 234467888887653 44444333 34432110 0112
Q ss_pred cCHHHHHHHHHHHhCC-CcEEEEEeCCC
Q 047607 241 KNVQEKAQEIFKILSD-KKFMLLLDDIW 267 (352)
Q Consensus 241 ~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 267 (352)
...+.....+.+.+.. +.-++|+|.+-
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 2345556666666533 44589999984
No 472
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.45 E-value=0.59 Score=42.76 Aligned_cols=144 Identities=14% Similarity=0.105 Sum_probs=79.2
Q ss_pred HHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhcc-------CCCCCCEEEEEEe-CCccCHHHHHHHHHHHcCC
Q 047607 163 FERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLV-------SPNHFDFVIWVVV-SKDLQLEKIQECVAEKIGL 233 (352)
Q Consensus 163 ~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~ 233 (352)
++.+.+.+..++ .++..++|..|.||+++|..+.+.... ...+.+...++.. .....+.++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 445566666554 567889999999999999999887621 0112222333321 1111222211 22222211
Q ss_pred CCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc--ccccccCCCCCCCCCcEEEEecC-ChHHHhh-ccCCceee
Q 047607 234 FNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD--LAQVGLPIPSPRSTSSKVVFTSR-DFEVCGQ-MEAHRSFK 309 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~gs~IiiTTr-~~~v~~~-~~~~~~~~ 309 (352)
.. .-.+++-++|+|+++.... ...+...+..- ...+.+|++|. ...+... .+....++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEP-p~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEP-PKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCC-CCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 10 0014677889999876532 33333333332 44566665554 4444433 33456889
Q ss_pred cCCCCHHHHHHHHHHh
Q 047607 310 VECLAYEDAWELFEEK 325 (352)
Q Consensus 310 l~~L~~~e~~~Lf~~~ 325 (352)
+.+++.++..+.+...
T Consensus 146 f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 146 VKEPDQQKILAKLLSK 161 (299)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 9999999988877764
No 473
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.44 E-value=0.056 Score=51.78 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=53.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC----CCCCcCH------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE----SWSSKNV------ 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~~------ 243 (352)
.-..++|+|..|+|||||++.++... .. ...++...-.+.....+.+...+..-+.... .....+.
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~---~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNA---KA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC---CC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 44688999999999999999998866 21 2234433333445666666655554322110 0011111
Q ss_pred HHHHHHHHHHh--CCCcEEEEEeCCCCc
Q 047607 244 QEKAQEIFKIL--SDKKFMLLLDDIWEP 269 (352)
Q Consensus 244 ~~~~~~l~~~L--~~kr~LlVlDdv~~~ 269 (352)
......+.+++ +++..||++||+-..
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 12223344444 578999999999653
No 474
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.44 E-value=0.013 Score=48.59 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|.|.|++|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 475
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.43 E-value=0.014 Score=49.15 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++.|+|++|+|||||++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999977
No 476
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.42 E-value=0.13 Score=49.38 Aligned_cols=90 Identities=21% Similarity=0.278 Sum_probs=50.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHcCCCCC----CCCCcCHH----
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK-DLQLEKIQECVAEKIGLFNE----SWSSKNVQ---- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~---- 244 (352)
.-..++|.|.+|+|||||.+.+.... . .+....+.+.. ...+.....+.......... .....+..
T Consensus 144 ~Gq~~~I~G~sG~GKStLl~~I~~~~---~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~ 218 (422)
T TIGR02546 144 EGQRIGIFAGAGVGKSTLLGMIARGA---S--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK 218 (422)
T ss_pred CCCEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence 45688999999999999999998765 2 23333333333 34455555444433211100 00111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 245 --EKAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 245 --~~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
.....+.+++ ++++.|+++|++-.
T Consensus 219 ~~~~a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 219 AAYTATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCchH
Confidence 1222344444 56899999999963
No 477
>PRK06820 type III secretion system ATPase; Validated
Probab=95.40 E-value=0.045 Score=52.58 Aligned_cols=90 Identities=20% Similarity=0.295 Sum_probs=48.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----CCCCc-CHHH--
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAEKIGLFNE----SWSSK-NVQE-- 245 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~-~~~~-- 245 (352)
+-..++|+|.+|+|||||++.+.... +.+..+..-+.... .+..+....+..-..... ..... ....
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~-----~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~ 236 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADS-----AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLK 236 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccC-----CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHH
Confidence 34588999999999999999887654 23344445554442 223332222211000000 00111 1111
Q ss_pred ---HHHHHHHHh--CCCcEEEEEeCCCC
Q 047607 246 ---KAQEIFKIL--SDKKFMLLLDDIWE 268 (352)
Q Consensus 246 ---~~~~l~~~L--~~kr~LlVlDdv~~ 268 (352)
....+.+++ +++.+||++||+-.
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 264 (440)
T PRK06820 237 GLSTATTIAEYFRDRGKKVLLMADSLTR 264 (440)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchhH
Confidence 122344444 57899999999854
No 478
>PRK13695 putative NTPase; Provisional
Probab=95.39 E-value=0.021 Score=47.84 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++|.|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 479
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.38 E-value=0.55 Score=42.61 Aligned_cols=38 Identities=11% Similarity=0.067 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 162 TFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 162 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-++|...+..+. .....++|+.|+||+++|..+....
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 4466777777765 5678899999999999999998877
No 480
>PRK01184 hypothetical protein; Provisional
Probab=95.37 E-value=0.013 Score=49.42 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=18.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|+|+|++|+||||+++ +....
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc
Confidence 479999999999999987 44433
No 481
>PRK08356 hypothetical protein; Provisional
Probab=95.37 E-value=0.014 Score=49.87 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=19.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQIN 196 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~ 196 (352)
..+|+|+|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999993
No 482
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.36 E-value=0.17 Score=47.65 Aligned_cols=38 Identities=26% Similarity=0.416 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcC----CcEEEEEEecCCCcHH-HHHHHHHHhh
Q 047607 162 TFERVWSCVMED----TIGIVGLYGMGGVGKT-TLLTQINNKF 199 (352)
Q Consensus 162 ~~~~l~~~L~~~----~~~vi~I~G~~GiGKT-tLa~~v~~~~ 199 (352)
....+..++.++ +.+++.++||.|+||| |||+..+.-.
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 344445555444 4799999999999997 6666665544
No 483
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.34 E-value=0.082 Score=54.07 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-..++|+|..|+|||||++.+..-+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998766
No 484
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.33 E-value=0.014 Score=50.08 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=68.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEe-------------------CCcc----------------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV-------------------SKDL---------------- 218 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-------------------s~~~---------------- 218 (352)
+-.+++|+|++|+|||||.+.+..-. ..=.+.+|+.- -+.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 45799999999999999999886544 22234445432 1111
Q ss_pred ---------CHHHHHHHHHHHcCCCCCCC---CC-cCHHHHHHHHHHHhCCCcEEEEEeCCCCcccc---cccccCCCCC
Q 047607 219 ---------QLEKIQECVAEKIGLFNESW---SS-KNVQEKAQEIFKILSDKKFMLLLDDIWEPVDL---AQVGLPIPSP 282 (352)
Q Consensus 219 ---------~~~~~~~~i~~~l~~~~~~~---~~-~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~---~~l~~~~~~~ 282 (352)
...+...+++..++...... .. ..-++..-.|.+.|.-++-++.||+.-+.-|- .+....+..-
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 23455556666666543211 11 11122223355566777889999998764321 1211111111
Q ss_pred CCCCcEEEEecCChHHHhhc
Q 047607 283 RSTSSKVVFTSRDFEVCGQM 302 (352)
Q Consensus 283 ~~~gs~IiiTTr~~~v~~~~ 302 (352)
...|-..|+.|..-..|...
T Consensus 183 A~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 183 AEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHcCCeEEEEechhHHHHHh
Confidence 14566677777765555544
No 485
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.32 E-value=0.04 Score=45.55 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
++..|+|+.|.|||++.+.+.--
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999987543
No 486
>PRK02496 adk adenylate kinase; Provisional
Probab=95.32 E-value=0.014 Score=49.27 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+.|.|++|+||||+++.+...+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 487
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.30 E-value=0.062 Score=55.32 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-..++|+|..|+|||||++.+..-+
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998765
No 488
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.017 Score=48.29 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-.++.|.||+|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999998875
No 489
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.29 E-value=0.02 Score=52.77 Aligned_cols=111 Identities=13% Similarity=0.115 Sum_probs=58.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC--CCCCCCCCcCHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG--LFNESWSSKNVQEKAQEIF 251 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~~~l~ 251 (352)
....+.|.|+.|+|||||++.+.... ..... ++.+.-.....+.. -..+. ..... .....-...+.+.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~---~~~~~-iv~ied~~El~~~~-----~~~~~l~~~~~~-~~~~~~~~~~~l~ 212 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI---PKDER-IITIEDTREIFLPH-----PNYVHLFYSKGG-QGLAKVTPKDLLQ 212 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC---Ccccc-EEEEcCccccCCCC-----CCEEEEEecCCC-CCcCccCHHHHHH
Confidence 34799999999999999999988766 22222 22221100100000 00000 00000 1111123344556
Q ss_pred HHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcE-EEEecCChHHH
Q 047607 252 KILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSK-VVFTSRDFEVC 299 (352)
Q Consensus 252 ~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~-IiiTTr~~~v~ 299 (352)
..|+...=.+++|++...+.+.-+ ..+. .|.. ++.|+...+..
T Consensus 213 ~~Lr~~pd~ii~gE~r~~e~~~~l-~a~~----~g~~~~i~T~Ha~~~~ 256 (308)
T TIGR02788 213 SCLRMRPDRIILGELRGDEAFDFI-RAVN----TGHPGSITTLHAGSPE 256 (308)
T ss_pred HHhcCCCCeEEEeccCCHHHHHHH-HHHh----cCCCeEEEEEeCCCHH
Confidence 677778888999999887655433 2222 2332 46777665543
No 490
>PLN02459 probable adenylate kinase
Probab=95.29 E-value=0.048 Score=48.60 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+.|.|+||+||||+++.+...+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47778999999999999998877
No 491
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.29 E-value=0.068 Score=51.64 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=55.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC--EEEEEEeCCc-cCHHHHHHHHHHHcCCCCC----CCCCc-CHH-
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD--FVIWVVVSKD-LQLEKIQECVAEKIGLFNE----SWSSK-NVQ- 244 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~-~~~- 244 (352)
.-.-++|.|..|+|||||+.++.++. .....+. .++++-+.+. ..+.++...+...-..... ..... ...
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 34678999999999999999998876 2221111 5666666554 3455666655543211100 00111 111
Q ss_pred ----HHHHHHHHHhC---CCcEEEEEeCCCC
Q 047607 245 ----EKAQEIFKILS---DKKFMLLLDDIWE 268 (352)
Q Consensus 245 ----~~~~~l~~~L~---~kr~LlVlDdv~~ 268 (352)
.....+.++++ ++++||++||+-.
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 12334555554 6789999999853
No 492
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.29 E-value=0.02 Score=48.48 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+++.|+|++|+|||||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998875
No 493
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.28 E-value=0.047 Score=44.01 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|+|+|.+|+|||||.+.+....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~ 23 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ 23 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC
Confidence 6899999999999999998763
No 494
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.25 E-value=0.075 Score=52.45 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-..++|+|..|+|||||.+.+....
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34689999999999999999998876
No 495
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.23 E-value=0.021 Score=49.54 Aligned_cols=26 Identities=35% Similarity=0.315 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 496
>PRK13808 adenylate kinase; Provisional
Probab=95.22 E-value=0.026 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|.|+|+||+||||+++.+...+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998877
No 497
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.21 E-value=0.06 Score=46.11 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+....|+|+|.+|+|||||...+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 345789999999999999999998764
No 498
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.21 E-value=0.036 Score=54.56 Aligned_cols=27 Identities=19% Similarity=0.237 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....+|.++|.+|+||||+|+.+....
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~ 393 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPA 393 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999988754
No 499
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.21 E-value=0.013 Score=54.93 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=45.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
..+=+=|||..|.|||.|+-.+|+.. .+...-. .-....+.++-..+..... ... .+..+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~l-p~~~k~R----------~HFh~Fm~~vh~~l~~~~~--~~~----~l~~va~~ 123 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSL-PIKRKRR----------VHFHEFMLDVHSRLHQLRG--QDD----PLPQVADE 123 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhC-Ccccccc----------ccccHHHHHHHHHHHHHhC--CCc----cHHHHHHH
Confidence 35667799999999999999999988 3311110 0112333333333321110 112 23344455
Q ss_pred hCCCcEEEEEeCCCCc
Q 047607 254 LSDKKFMLLLDDIWEP 269 (352)
Q Consensus 254 L~~kr~LlVlDdv~~~ 269 (352)
+.++..||.||++.-.
T Consensus 124 l~~~~~lLcfDEF~V~ 139 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVT 139 (362)
T ss_pred HHhcCCEEEEeeeecc
Confidence 5667779999998543
No 500
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.20 E-value=0.018 Score=44.61 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHHHh
Q 047607 178 VGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~ 198 (352)
|+|+|++|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
Done!