Query 047607
Match_columns 352
No_of_seqs 229 out of 2152
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 22:48:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-29 3.8E-34 250.3 16.4 183 154-346 128-324 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 3.7E-24 1.3E-28 229.2 15.5 182 152-345 122-314 (1249)
3 1vt4_I APAF-1 related killer D 99.9 1.9E-24 6.7E-29 219.4 10.0 165 154-327 128-312 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 5.5E-22 1.9E-26 197.2 14.7 167 152-329 122-302 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.6 4.8E-16 1.6E-20 120.2 8.7 83 9-98 1-84 (115)
6 1w5s_A Origin recognition comp 99.5 6.7E-14 2.3E-18 132.4 11.1 172 153-326 21-228 (412)
7 2qby_B CDC6 homolog 3, cell di 99.5 4E-13 1.4E-17 126.0 13.5 173 153-326 19-210 (384)
8 2qby_A CDC6 homolog 1, cell di 99.4 3.8E-13 1.3E-17 125.8 9.5 172 153-326 19-210 (386)
9 2qen_A Walker-type ATPase; unk 99.4 8.4E-13 2.9E-17 121.9 11.5 163 153-326 11-216 (350)
10 2fna_A Conserved hypothetical 99.4 3.1E-12 1.1E-16 118.3 14.6 162 153-326 12-222 (357)
11 2v1u_A Cell division control p 99.4 2.7E-12 9.3E-17 120.1 13.5 173 153-327 18-215 (387)
12 1fnn_A CDC6P, cell division co 99.4 1.2E-11 4.1E-16 115.9 16.6 171 153-327 16-207 (389)
13 2chg_A Replication factor C sm 99.2 1.3E-10 4.3E-15 99.8 12.0 156 154-328 17-176 (226)
14 1njg_A DNA polymerase III subu 99.2 1.2E-10 4.2E-15 101.1 11.9 166 154-328 23-200 (250)
15 1sxj_B Activator 1 37 kDa subu 99.0 3.5E-10 1.2E-14 103.1 8.5 156 154-328 21-181 (323)
16 3te6_A Regulatory protein SIR3 99.0 2.8E-09 9.4E-14 96.8 13.1 170 155-327 21-212 (318)
17 1jbk_A CLPB protein; beta barr 99.0 3.9E-10 1.3E-14 94.4 4.8 151 154-322 22-194 (195)
18 1iqp_A RFCS; clamp loader, ext 98.9 1.6E-09 5.4E-14 98.9 7.4 153 154-328 25-184 (327)
19 3h4m_A Proteasome-activating n 98.8 9E-09 3.1E-13 92.2 9.3 166 154-343 17-218 (285)
20 2chq_A Replication factor C sm 98.8 1.4E-08 4.9E-13 92.1 9.4 152 154-328 17-176 (319)
21 2z4s_A Chromosomal replication 98.7 6.2E-08 2.1E-12 92.4 10.2 156 155-328 106-278 (440)
22 3pvs_A Replication-associated 98.6 4.1E-07 1.4E-11 86.7 14.2 144 154-327 26-179 (447)
23 1jr3_A DNA polymerase III subu 98.6 2.5E-07 8.4E-12 85.9 11.7 165 154-327 16-192 (373)
24 3syl_A Protein CBBX; photosynt 98.6 1.6E-07 5.6E-12 84.9 10.0 150 155-328 32-219 (309)
25 3bos_A Putative DNA replicatio 98.6 2.1E-08 7.2E-13 87.0 3.4 144 154-327 28-188 (242)
26 1sxj_A Activator 1 95 kDa subu 98.6 3.4E-07 1.2E-11 89.1 12.2 161 154-330 39-226 (516)
27 2qz4_A Paraplegin; AAA+, SPG7, 98.6 1.5E-06 5.2E-11 76.4 14.9 151 154-327 6-191 (262)
28 1hqc_A RUVB; extended AAA-ATPa 98.5 1.6E-07 5.5E-12 85.5 8.3 144 154-327 12-182 (324)
29 3cf0_A Transitional endoplasmi 98.5 1.2E-06 4E-11 79.2 13.5 166 154-342 15-215 (301)
30 1sxj_E Activator 1 40 kDa subu 98.5 4.4E-07 1.5E-11 83.7 10.1 168 154-330 14-210 (354)
31 2p65_A Hypothetical protein PF 98.5 1.2E-07 4.3E-12 78.6 5.7 46 154-199 22-67 (187)
32 1sxj_D Activator 1 41 kDa subu 98.5 2.1E-07 7.1E-12 85.8 7.6 165 154-328 37-207 (353)
33 3uk6_A RUVB-like 2; hexameric 98.5 4.8E-07 1.7E-11 83.9 9.9 46 154-199 44-94 (368)
34 1xwi_A SKD1 protein; VPS4B, AA 98.5 4.3E-06 1.5E-10 76.3 15.9 150 154-328 12-194 (322)
35 1l8q_A Chromosomal replication 98.4 4.7E-07 1.6E-11 82.6 9.0 153 154-328 11-181 (324)
36 4b4t_J 26S protease regulatory 98.4 4.3E-06 1.5E-10 77.8 15.0 165 154-343 148-349 (405)
37 3eie_A Vacuolar protein sortin 98.4 1.5E-06 5.3E-11 79.2 11.9 148 154-328 18-199 (322)
38 2gno_A DNA polymerase III, gam 98.4 9.7E-07 3.3E-11 79.9 9.9 147 158-326 1-152 (305)
39 1d2n_A N-ethylmaleimide-sensit 98.4 2E-06 6.9E-11 76.4 11.6 149 154-325 33-211 (272)
40 3u61_B DNA polymerase accessor 98.4 1.1E-06 3.9E-11 80.0 9.9 139 154-321 26-173 (324)
41 3hu3_A Transitional endoplasmi 98.3 3.2E-06 1.1E-10 81.4 12.3 165 154-343 204-402 (489)
42 1qvr_A CLPB protein; coiled co 98.3 1.4E-06 4.9E-11 89.8 10.3 154 154-326 170-345 (854)
43 2qp9_X Vacuolar protein sortin 98.3 1.2E-06 4.2E-11 81.0 8.5 149 154-328 51-232 (355)
44 3pxg_A Negative regulator of g 98.3 3.6E-06 1.2E-10 80.8 11.7 148 154-326 180-338 (468)
45 2zan_A Vacuolar protein sortin 98.3 6.8E-06 2.3E-10 78.3 13.5 151 154-328 134-316 (444)
46 3pfi_A Holliday junction ATP-d 98.3 4.6E-06 1.6E-10 76.4 11.8 141 154-327 29-198 (338)
47 1sxj_C Activator 1 40 kDa subu 98.3 1.7E-06 5.9E-11 79.4 8.9 147 154-326 25-182 (340)
48 4b4t_H 26S protease regulatory 98.3 9E-06 3.1E-10 76.8 13.3 164 155-343 210-410 (467)
49 3d8b_A Fidgetin-like protein 1 98.3 5.9E-06 2E-10 76.4 11.9 149 154-326 84-264 (357)
50 4b4t_L 26S protease subunit RP 98.3 4.9E-06 1.7E-10 78.6 11.4 164 154-342 181-381 (437)
51 3b9p_A CG5977-PA, isoform A; A 98.2 1.4E-05 4.7E-10 71.7 13.5 148 154-327 21-203 (297)
52 3n70_A Transport activator; si 98.2 8.6E-07 3E-11 71.0 4.6 45 155-199 2-48 (145)
53 3vfd_A Spastin; ATPase, microt 98.2 1.6E-05 5.5E-10 74.4 13.9 150 154-328 115-297 (389)
54 1r6b_X CLPA protein; AAA+, N-t 98.2 1.9E-05 6.3E-10 80.5 15.4 154 154-326 186-362 (758)
55 2r62_A Cell division protease 98.2 1.1E-06 3.8E-11 77.7 5.6 151 154-327 11-197 (268)
56 4b4t_M 26S protease regulatory 98.2 3.4E-06 1.2E-10 79.6 8.7 164 154-343 181-382 (434)
57 1a5t_A Delta prime, HOLB; zinc 98.2 1.1E-05 3.8E-10 73.9 11.9 158 159-326 7-180 (334)
58 3ec2_A DNA replication protein 98.2 6.1E-07 2.1E-11 74.5 2.9 117 160-296 20-143 (180)
59 3pxi_A Negative regulator of g 98.2 1.4E-05 4.8E-10 81.4 13.1 148 154-326 180-338 (758)
60 4fcw_A Chaperone protein CLPB; 98.2 8.4E-06 2.9E-10 73.6 10.1 61 154-217 17-86 (311)
61 2ce7_A Cell division protein F 98.2 1.6E-05 5.4E-10 76.1 12.3 151 154-328 16-201 (476)
62 1lv7_A FTSH; alpha/beta domain 98.1 2.9E-05 9.8E-10 68.2 13.0 149 154-326 12-195 (257)
63 4b4t_I 26S protease regulatory 98.1 1.2E-05 4E-10 75.3 10.1 163 155-343 183-383 (437)
64 4b4t_K 26S protease regulatory 98.1 1.1E-05 3.6E-10 76.1 9.8 165 154-343 172-374 (428)
65 1ofh_A ATP-dependent HSL prote 98.1 1.7E-05 5.7E-10 71.4 10.3 46 154-199 15-74 (310)
66 2w58_A DNAI, primosome compone 98.0 1E-05 3.5E-10 68.2 7.8 121 154-295 25-158 (202)
67 1ojl_A Transcriptional regulat 98.0 2.1E-05 7.1E-10 71.1 9.0 61 154-217 2-64 (304)
68 3cf2_A TER ATPase, transitiona 98.0 3.1E-05 1.1E-09 78.4 11.1 164 155-343 205-402 (806)
69 2bjv_A PSP operon transcriptio 98.0 1.8E-05 6.2E-10 69.8 8.3 61 154-217 6-68 (265)
70 3co5_A Putative two-component 98.0 2.2E-06 7.4E-11 68.5 1.8 46 154-199 4-51 (143)
71 2kjq_A DNAA-related protein; s 97.9 4.7E-06 1.6E-10 67.1 3.7 54 156-215 20-73 (149)
72 3pxi_A Negative regulator of g 97.9 1.3E-05 4.4E-10 81.6 6.5 147 154-326 491-675 (758)
73 2dhr_A FTSH; AAA+ protein, hex 97.9 0.00024 8E-09 68.4 14.8 147 154-327 31-215 (499)
74 1iy2_A ATP-dependent metallopr 97.8 0.00032 1.1E-08 62.2 14.2 151 154-327 40-224 (278)
75 2x8a_A Nuclear valosin-contain 97.8 0.00049 1.7E-08 61.0 15.2 165 154-342 10-210 (274)
76 3t15_A Ribulose bisphosphate c 97.8 0.0001 3.5E-09 66.1 10.8 26 174-199 35-60 (293)
77 3m6a_A ATP-dependent protease 97.8 0.00012 4.1E-09 71.5 11.5 155 154-326 81-266 (543)
78 1ypw_A Transitional endoplasmi 97.8 6.8E-05 2.3E-09 76.7 9.6 163 154-341 204-400 (806)
79 1ixz_A ATP-dependent metallopr 97.8 0.00067 2.3E-08 59.1 14.8 149 154-326 16-199 (254)
80 2cvh_A DNA repair and recombin 97.5 0.00033 1.1E-08 59.4 9.3 89 174-269 19-117 (220)
81 1qvr_A CLPB protein; coiled co 97.5 0.00017 5.9E-09 74.3 8.0 60 155-217 559-627 (854)
82 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00015 5.2E-09 73.7 7.4 57 154-216 458-523 (758)
83 3hr8_A Protein RECA; alpha and 97.4 0.00054 1.9E-08 62.9 9.2 87 174-268 60-150 (356)
84 2c9o_A RUVB-like 1; hexameric 97.4 0.00032 1.1E-08 66.9 7.6 46 154-199 37-87 (456)
85 1n0w_A DNA repair protein RAD5 97.4 0.00079 2.7E-08 58.0 9.3 94 174-269 23-131 (243)
86 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00018 6.2E-09 64.8 5.1 70 175-269 123-194 (331)
87 2zr9_A Protein RECA, recombina 97.3 0.00095 3.2E-08 61.3 9.3 87 174-268 60-150 (349)
88 1v5w_A DMC1, meiotic recombina 97.2 0.0019 6.6E-08 59.1 11.0 93 174-268 121-230 (343)
89 2z43_A DNA repair and recombin 97.2 0.0014 4.7E-08 59.5 9.8 93 174-268 106-214 (324)
90 1xp8_A RECA protein, recombina 97.2 0.0014 4.7E-08 60.6 9.6 87 174-268 73-163 (366)
91 2b8t_A Thymidine kinase; deoxy 97.2 0.00014 4.7E-09 62.4 2.2 111 174-294 11-124 (223)
92 3io5_A Recombination and repai 97.1 0.0016 5.3E-08 58.6 8.9 89 175-269 28-123 (333)
93 2qgz_A Helicase loader, putati 97.1 0.00031 1E-08 63.5 4.4 39 161-199 135-176 (308)
94 1in4_A RUVB, holliday junction 97.1 0.00034 1.2E-08 63.9 4.1 46 154-199 25-75 (334)
95 2i1q_A DNA repair and recombin 97.0 0.0025 8.5E-08 57.7 9.0 94 174-268 97-215 (322)
96 4a74_A DNA repair and recombin 96.9 0.0052 1.8E-07 52.2 10.3 58 174-232 24-84 (231)
97 1rz3_A Hypothetical protein rb 96.9 0.0012 4E-08 55.5 5.9 42 158-199 2-46 (201)
98 3cf2_A TER ATPase, transitiona 96.9 0.0029 9.9E-08 64.1 9.5 164 154-342 477-677 (806)
99 1u94_A RECA protein, recombina 96.9 0.0026 8.9E-08 58.5 8.4 87 174-268 62-152 (356)
100 3sr0_A Adenylate kinase; phosp 96.9 0.003 1E-07 53.3 7.9 23 177-199 2-24 (206)
101 2r44_A Uncharacterized protein 96.8 0.00093 3.2E-08 60.7 4.9 44 154-199 27-70 (331)
102 3c8u_A Fructokinase; YP_612366 96.8 0.0011 3.9E-08 55.9 5.0 39 161-199 6-46 (208)
103 1g5t_A COB(I)alamin adenosyltr 96.8 0.00077 2.6E-08 56.2 3.8 118 174-296 27-163 (196)
104 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0033 1.1E-07 53.4 7.8 117 174-296 22-168 (235)
105 1ypw_A Transitional endoplasmi 96.7 7.4E-05 2.5E-09 76.4 -3.7 46 154-199 477-535 (806)
106 1pzn_A RAD51, DNA repair and r 96.7 0.0063 2.2E-07 55.8 9.5 94 174-269 130-243 (349)
107 3hws_A ATP-dependent CLP prote 96.7 0.0016 5.4E-08 60.1 5.3 45 155-199 16-75 (363)
108 1g8p_A Magnesium-chelatase 38 96.7 0.00088 3E-08 61.1 3.6 46 154-199 24-69 (350)
109 3lw7_A Adenylate kinase relate 96.7 0.00093 3.2E-08 54.2 3.3 23 176-199 2-24 (179)
110 3lda_A DNA repair protein RAD5 96.7 0.0085 2.9E-07 55.9 10.0 94 174-268 177-284 (400)
111 1qhx_A CPT, protein (chloramph 96.6 0.001 3.4E-08 54.5 3.2 24 176-199 4-27 (178)
112 3kb2_A SPBC2 prophage-derived 96.6 0.001 3.5E-08 53.9 3.3 24 176-199 2-25 (173)
113 1um8_A ATP-dependent CLP prote 96.6 0.0021 7.1E-08 59.5 5.6 46 154-199 21-96 (376)
114 3ice_A Transcription terminati 96.6 0.00081 2.8E-08 62.0 2.5 52 166-218 164-216 (422)
115 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.0015 5.1E-08 62.8 4.6 44 154-199 22-65 (500)
116 3dm5_A SRP54, signal recogniti 96.6 0.011 3.9E-07 55.6 10.4 26 174-199 99-124 (443)
117 1ly1_A Polynucleotide kinase; 96.6 0.0014 4.7E-08 53.6 3.6 22 176-197 3-24 (181)
118 1zp6_A Hypothetical protein AT 96.6 0.0015 5E-08 54.1 3.7 26 174-199 8-33 (191)
119 3kl4_A SRP54, signal recogniti 96.6 0.017 5.7E-07 54.4 11.3 26 174-199 96-121 (433)
120 3uie_A Adenylyl-sulfate kinase 96.5 0.0017 6E-08 54.3 4.2 29 171-199 21-49 (200)
121 3vaa_A Shikimate kinase, SK; s 96.5 0.0013 4.4E-08 55.1 3.3 26 174-199 24-49 (199)
122 1nks_A Adenylate kinase; therm 96.5 0.0018 6.2E-08 53.5 3.8 24 176-199 2-25 (194)
123 3trf_A Shikimate kinase, SK; a 96.5 0.0015 5.2E-08 53.8 3.3 25 175-199 5-29 (185)
124 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0034 1.2E-07 57.3 5.8 43 157-199 2-48 (359)
125 2rhm_A Putative kinase; P-loop 96.5 0.002 6.9E-08 53.3 4.0 25 175-199 5-29 (193)
126 1kag_A SKI, shikimate kinase I 96.5 0.0013 4.6E-08 53.4 2.9 24 176-199 5-28 (173)
127 1g41_A Heat shock protein HSLU 96.5 0.0022 7.7E-08 60.5 4.7 46 154-199 15-74 (444)
128 1kgd_A CASK, peripheral plasma 96.5 0.0016 5.3E-08 53.7 3.2 25 175-199 5-29 (180)
129 2hf9_A Probable hydrogenase ni 96.4 0.0036 1.2E-07 53.2 5.6 39 161-199 24-62 (226)
130 3bh0_A DNAB-like replicative h 96.4 0.014 4.9E-07 52.5 9.6 51 174-229 67-117 (315)
131 4eun_A Thermoresistant glucoki 96.4 0.002 6.8E-08 54.0 3.5 27 173-199 27-53 (200)
132 1jr3_D DNA polymerase III, del 96.4 0.02 6.7E-07 52.1 10.5 136 166-327 9-156 (343)
133 1odf_A YGR205W, hypothetical 3 96.4 0.0041 1.4E-07 55.5 5.6 27 173-199 29-55 (290)
134 1gvn_B Zeta; postsegregational 96.4 0.0041 1.4E-07 55.4 5.6 26 174-199 32-57 (287)
135 2wsm_A Hydrogenase expression/ 96.3 0.0037 1.3E-07 52.9 5.1 42 158-199 13-54 (221)
136 3e70_C DPA, signal recognition 96.3 0.022 7.6E-07 51.6 10.5 27 173-199 127-153 (328)
137 1knq_A Gluconate kinase; ALFA/ 96.3 0.0024 8.1E-08 52.1 3.7 25 175-199 8-32 (175)
138 2px0_A Flagellar biosynthesis 96.3 0.016 5.3E-07 51.8 9.3 26 174-199 104-129 (296)
139 1kht_A Adenylate kinase; phosp 96.3 0.0022 7.5E-08 52.9 3.4 24 176-199 4-27 (192)
140 1tev_A UMP-CMP kinase; ploop, 96.3 0.0025 8.6E-08 52.7 3.7 25 175-199 3-27 (196)
141 2yvu_A Probable adenylyl-sulfa 96.3 0.0025 8.7E-08 52.5 3.7 26 174-199 12-37 (186)
142 2q6t_A DNAB replication FORK h 96.3 0.1 3.5E-06 49.3 15.3 52 174-229 199-250 (444)
143 3t61_A Gluconokinase; PSI-biol 96.3 0.0019 6.5E-08 54.1 2.9 25 175-199 18-42 (202)
144 3tr0_A Guanylate kinase, GMP k 96.3 0.0022 7.7E-08 53.6 3.3 25 175-199 7-31 (205)
145 3iij_A Coilin-interacting nucl 96.3 0.002 6.9E-08 52.8 2.9 25 175-199 11-35 (180)
146 2c95_A Adenylate kinase 1; tra 96.3 0.0026 8.9E-08 52.7 3.7 26 174-199 8-33 (196)
147 3umf_A Adenylate kinase; rossm 96.3 0.0027 9.4E-08 54.0 3.8 26 174-199 28-53 (217)
148 2r6a_A DNAB helicase, replicat 96.3 0.087 3E-06 49.9 14.7 50 174-227 202-251 (454)
149 2ze6_A Isopentenyl transferase 96.3 0.0025 8.6E-08 55.6 3.6 24 176-199 2-25 (253)
150 2bdt_A BH3686; alpha-beta prot 96.3 0.0026 8.7E-08 52.7 3.5 23 176-198 3-25 (189)
151 2jaq_A Deoxyguanosine kinase; 96.2 0.0025 8.6E-08 53.1 3.4 23 177-199 2-24 (205)
152 2bbw_A Adenylate kinase 4, AK4 96.2 0.0025 8.6E-08 55.2 3.5 26 174-199 26-51 (246)
153 2qor_A Guanylate kinase; phosp 96.2 0.0021 7.3E-08 54.0 2.9 26 174-199 11-36 (204)
154 3tau_A Guanylate kinase, GMP k 96.2 0.0026 8.7E-08 53.7 3.4 26 174-199 7-32 (208)
155 2p5t_B PEZT; postsegregational 96.2 0.0042 1.4E-07 54.1 4.8 26 174-199 31-56 (253)
156 1ye8_A Protein THEP1, hypothet 96.2 0.0029 9.8E-08 52.1 3.4 23 177-199 2-24 (178)
157 3a00_A Guanylate kinase, GMP k 96.2 0.0022 7.5E-08 53.1 2.7 24 176-199 2-25 (186)
158 3cm0_A Adenylate kinase; ATP-b 96.2 0.0032 1.1E-07 51.8 3.6 25 175-199 4-28 (186)
159 1cke_A CK, MSSA, protein (cyti 96.2 0.0028 9.7E-08 53.9 3.4 24 176-199 6-29 (227)
160 2plr_A DTMP kinase, probable t 96.2 0.0034 1.2E-07 52.7 3.9 25 175-199 4-28 (213)
161 1zuh_A Shikimate kinase; alpha 96.2 0.003 1E-07 51.2 3.4 25 175-199 7-31 (168)
162 1cr0_A DNA primase/helicase; R 96.2 0.028 9.7E-07 49.9 10.2 40 174-215 34-73 (296)
163 1uf9_A TT1252 protein; P-loop, 96.2 0.0037 1.3E-07 52.1 4.1 26 173-198 6-31 (203)
164 2bwj_A Adenylate kinase 5; pho 96.2 0.0031 1E-07 52.4 3.5 25 175-199 12-36 (199)
165 1via_A Shikimate kinase; struc 96.2 0.0028 9.5E-08 51.8 3.2 23 177-199 6-28 (175)
166 2ck3_D ATP synthase subunit be 96.2 0.041 1.4E-06 52.1 11.4 100 166-267 143-263 (482)
167 3asz_A Uridine kinase; cytidin 96.1 0.0036 1.2E-07 52.7 3.9 26 174-199 5-30 (211)
168 2j41_A Guanylate kinase; GMP, 96.1 0.003 1E-07 52.8 3.4 25 175-199 6-30 (207)
169 1ukz_A Uridylate kinase; trans 96.1 0.0035 1.2E-07 52.4 3.8 26 174-199 14-39 (203)
170 1y63_A LMAJ004144AAA protein; 96.1 0.0032 1.1E-07 52.0 3.4 25 174-198 9-33 (184)
171 2iyv_A Shikimate kinase, SK; t 96.1 0.0023 7.8E-08 52.7 2.5 24 176-199 3-26 (184)
172 1qf9_A UMP/CMP kinase, protein 96.1 0.0038 1.3E-07 51.4 3.9 25 175-199 6-30 (194)
173 1ex7_A Guanylate kinase; subst 96.1 0.0026 8.8E-08 52.8 2.8 24 176-199 2-25 (186)
174 2if2_A Dephospho-COA kinase; a 96.1 0.0035 1.2E-07 52.5 3.5 22 176-197 2-23 (204)
175 2vli_A Antibiotic resistance p 96.1 0.0025 8.4E-08 52.3 2.4 25 175-199 5-29 (183)
176 4gp7_A Metallophosphoesterase; 96.1 0.003 1E-07 51.6 2.9 22 174-195 8-29 (171)
177 1vma_A Cell division protein F 96.0 0.02 6.8E-07 51.4 8.4 90 174-267 103-196 (306)
178 1lvg_A Guanylate kinase, GMP k 96.0 0.0029 1E-07 52.9 2.7 24 176-199 5-28 (198)
179 1sky_E F1-ATPase, F1-ATP synth 96.0 0.011 3.9E-07 55.9 7.0 91 176-268 152-256 (473)
180 1e6c_A Shikimate kinase; phosp 96.0 0.003 1E-07 51.2 2.7 24 176-199 3-26 (173)
181 3tlx_A Adenylate kinase 2; str 96.0 0.0085 2.9E-07 51.8 5.7 27 173-199 27-53 (243)
182 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0043 1.5E-07 54.3 3.8 25 175-199 4-28 (260)
183 2cdn_A Adenylate kinase; phosp 96.0 0.0039 1.3E-07 52.1 3.4 25 175-199 20-44 (201)
184 1fx0_B ATP synthase beta chain 96.0 0.026 9E-07 53.6 9.3 100 166-267 155-276 (498)
185 1jjv_A Dephospho-COA kinase; P 96.0 0.0039 1.3E-07 52.3 3.3 22 176-197 3-24 (206)
186 4a1f_A DNAB helicase, replicat 96.0 0.07 2.4E-06 48.4 11.8 50 174-228 45-94 (338)
187 2qt1_A Nicotinamide riboside k 96.0 0.0045 1.5E-07 52.0 3.7 26 174-199 20-45 (207)
188 2wwf_A Thymidilate kinase, put 96.0 0.0045 1.5E-07 52.0 3.7 32 175-208 10-41 (212)
189 2pbr_A DTMP kinase, thymidylat 96.0 0.0042 1.4E-07 51.3 3.4 23 177-199 2-24 (195)
190 3cmu_A Protein RECA, recombina 96.0 0.016 5.6E-07 63.9 8.7 86 174-267 1426-1515(2050)
191 2pt5_A Shikimate kinase, SK; a 96.0 0.0043 1.5E-07 50.0 3.4 23 177-199 2-24 (168)
192 1nn5_A Similar to deoxythymidy 95.9 0.0047 1.6E-07 51.9 3.7 25 175-199 9-33 (215)
193 3ney_A 55 kDa erythrocyte memb 95.9 0.0045 1.6E-07 51.8 3.4 26 174-199 18-43 (197)
194 2ffh_A Protein (FFH); SRP54, s 95.9 0.025 8.6E-07 53.1 8.8 25 175-199 98-122 (425)
195 1zd8_A GTP:AMP phosphotransfer 95.9 0.0045 1.5E-07 52.9 3.5 25 175-199 7-31 (227)
196 1znw_A Guanylate kinase, GMP k 95.9 0.0041 1.4E-07 52.3 3.2 26 174-199 19-44 (207)
197 3tqc_A Pantothenate kinase; bi 95.9 0.0076 2.6E-07 54.5 5.0 26 174-199 91-116 (321)
198 3k1j_A LON protease, ATP-depen 95.9 0.013 4.3E-07 57.9 7.0 43 155-199 42-84 (604)
199 1gtv_A TMK, thymidylate kinase 95.9 0.003 1E-07 53.2 2.1 23 177-199 2-24 (214)
200 1aky_A Adenylate kinase; ATP:A 95.9 0.005 1.7E-07 52.3 3.5 25 175-199 4-28 (220)
201 3fb4_A Adenylate kinase; psych 95.9 0.0049 1.7E-07 52.1 3.4 23 177-199 2-24 (216)
202 4e22_A Cytidylate kinase; P-lo 95.8 0.0051 1.8E-07 53.6 3.4 26 174-199 26-51 (252)
203 2xxa_A Signal recognition part 95.8 0.067 2.3E-06 50.4 11.3 26 174-199 99-124 (433)
204 1zak_A Adenylate kinase; ATP:A 95.8 0.0048 1.6E-07 52.5 3.1 25 175-199 5-29 (222)
205 3dl0_A Adenylate kinase; phosp 95.8 0.0054 1.9E-07 51.8 3.4 23 177-199 2-24 (216)
206 2v54_A DTMP kinase, thymidylat 95.8 0.0056 1.9E-07 51.1 3.4 25 175-199 4-28 (204)
207 3aez_A Pantothenate kinase; tr 95.8 0.0061 2.1E-07 55.0 3.8 26 174-199 89-114 (312)
208 2z0h_A DTMP kinase, thymidylat 95.7 0.0059 2E-07 50.6 3.4 23 177-199 2-24 (197)
209 1z6g_A Guanylate kinase; struc 95.7 0.0046 1.6E-07 52.6 2.7 26 174-199 22-47 (218)
210 1m7g_A Adenylylsulfate kinase; 95.7 0.0087 3E-07 50.4 4.5 27 173-199 23-49 (211)
211 1uj2_A Uridine-cytidine kinase 95.7 0.0069 2.4E-07 52.7 3.9 26 174-199 21-46 (252)
212 1htw_A HI0065; nucleotide-bind 95.7 0.0064 2.2E-07 49.0 3.4 26 174-199 32-57 (158)
213 2grj_A Dephospho-COA kinase; T 95.7 0.0069 2.4E-07 50.5 3.6 26 174-199 11-36 (192)
214 1tue_A Replication protein E1; 95.7 0.011 3.7E-07 49.7 4.6 38 162-199 44-82 (212)
215 2jeo_A Uridine-cytidine kinase 95.7 0.0071 2.4E-07 52.3 3.7 26 174-199 24-49 (245)
216 2pez_A Bifunctional 3'-phospho 95.6 0.0085 2.9E-07 49.0 3.9 25 175-199 5-29 (179)
217 3upu_A ATP-dependent DNA helic 95.6 0.016 5.5E-07 55.1 6.3 40 160-200 31-70 (459)
218 1j8m_F SRP54, signal recogniti 95.6 0.046 1.6E-06 48.8 8.9 25 175-199 98-122 (297)
219 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.0086 2.9E-07 54.4 4.1 107 175-298 171-277 (330)
220 2ehv_A Hypothetical protein PH 95.6 0.0064 2.2E-07 52.4 3.2 24 174-197 29-52 (251)
221 1s96_A Guanylate kinase, GMP k 95.6 0.0069 2.4E-07 51.6 3.2 26 174-199 15-40 (219)
222 1xjc_A MOBB protein homolog; s 95.6 0.0078 2.7E-07 49.0 3.4 25 175-199 4-28 (169)
223 3be4_A Adenylate kinase; malar 95.6 0.0079 2.7E-07 51.0 3.6 24 176-199 6-29 (217)
224 2yhs_A FTSY, cell division pro 95.5 0.053 1.8E-06 51.7 9.5 26 174-199 292-317 (503)
225 1e4v_A Adenylate kinase; trans 95.5 0.0082 2.8E-07 50.7 3.6 23 177-199 2-24 (214)
226 3fwy_A Light-independent proto 95.5 0.0083 2.9E-07 54.1 3.6 27 173-199 46-72 (314)
227 1vht_A Dephospho-COA kinase; s 95.5 0.0093 3.2E-07 50.4 3.8 23 175-197 4-26 (218)
228 2xb4_A Adenylate kinase; ATP-b 95.5 0.0084 2.9E-07 51.1 3.4 23 177-199 2-24 (223)
229 2i3b_A HCR-ntpase, human cance 95.5 0.0071 2.4E-07 50.3 2.8 23 177-199 3-25 (189)
230 3ake_A Cytidylate kinase; CMP 95.4 0.009 3.1E-07 49.9 3.4 23 177-199 4-26 (208)
231 3r20_A Cytidylate kinase; stru 95.4 0.0091 3.1E-07 51.4 3.4 25 175-199 9-33 (233)
232 3nwj_A ATSK2; P loop, shikimat 95.4 0.007 2.4E-07 52.7 2.7 25 175-199 48-72 (250)
233 2f1r_A Molybdopterin-guanine d 95.4 0.0062 2.1E-07 49.8 2.2 24 176-199 3-26 (171)
234 3lnc_A Guanylate kinase, GMP k 95.4 0.0055 1.9E-07 52.5 2.0 25 175-199 27-52 (231)
235 1ak2_A Adenylate kinase isoenz 95.4 0.0097 3.3E-07 51.0 3.5 25 175-199 16-40 (233)
236 2f6r_A COA synthase, bifunctio 95.3 0.01 3.6E-07 52.5 3.8 23 174-196 74-96 (281)
237 2pcj_A ABC transporter, lipopr 95.3 0.0078 2.7E-07 51.5 2.8 26 174-199 29-54 (224)
238 3tif_A Uncharacterized ABC tra 95.3 0.0083 2.8E-07 51.7 3.0 26 174-199 30-55 (235)
239 2j37_W Signal recognition part 95.3 0.12 4.1E-06 49.6 11.3 26 174-199 100-125 (504)
240 1rj9_A FTSY, signal recognitio 95.3 0.0098 3.4E-07 53.4 3.5 26 174-199 101-126 (304)
241 2onk_A Molybdate/tungstate ABC 95.3 0.0091 3.1E-07 51.6 3.2 25 174-199 24-48 (240)
242 1sq5_A Pantothenate kinase; P- 95.3 0.012 4E-07 53.0 3.9 26 174-199 79-104 (308)
243 3b85_A Phosphate starvation-in 95.3 0.0079 2.7E-07 50.8 2.6 23 176-198 23-45 (208)
244 2dr3_A UPF0273 protein PH0284; 95.3 0.013 4.4E-07 50.2 4.0 40 174-216 22-61 (247)
245 4eaq_A DTMP kinase, thymidylat 95.3 0.021 7.3E-07 48.9 5.3 26 174-199 25-50 (229)
246 3f9v_A Minichromosome maintena 95.3 0.0058 2E-07 60.2 2.0 46 154-199 295-351 (595)
247 3l0o_A Transcription terminati 95.2 0.025 8.4E-07 52.2 5.9 52 165-217 164-216 (427)
248 3d3q_A TRNA delta(2)-isopenten 95.2 0.011 3.9E-07 53.6 3.7 24 176-199 8-31 (340)
249 3b9q_A Chloroplast SRP recepto 95.2 0.013 4.3E-07 52.6 3.8 26 174-199 99-124 (302)
250 3crm_A TRNA delta(2)-isopenten 95.2 0.012 4E-07 53.1 3.6 24 176-199 6-29 (323)
251 3p32_A Probable GTPase RV1496/ 95.2 0.026 8.8E-07 51.8 5.9 37 163-199 65-103 (355)
252 3cmu_A Protein RECA, recombina 95.1 0.045 1.5E-06 60.5 8.5 87 174-268 382-472 (2050)
253 1g8f_A Sulfate adenylyltransfe 95.1 0.021 7.1E-07 54.9 5.4 46 154-199 372-419 (511)
254 1ls1_A Signal recognition part 95.1 0.065 2.2E-06 47.7 8.3 25 175-199 98-122 (295)
255 1np6_A Molybdopterin-guanine d 95.1 0.013 4.4E-07 48.0 3.4 25 175-199 6-30 (174)
256 3bgw_A DNAB-like replicative h 95.1 0.085 2.9E-06 49.8 9.6 40 174-216 196-235 (444)
257 1ltq_A Polynucleotide kinase; 95.1 0.013 4.3E-07 52.3 3.6 23 176-198 3-25 (301)
258 1b0u_A Histidine permease; ABC 95.1 0.0095 3.2E-07 52.2 2.6 26 174-199 31-56 (262)
259 2cbz_A Multidrug resistance-as 95.1 0.0097 3.3E-07 51.3 2.6 26 174-199 30-55 (237)
260 2d2e_A SUFC protein; ABC-ATPas 95.1 0.012 4E-07 51.3 3.2 25 174-198 28-52 (250)
261 3a8t_A Adenylate isopentenyltr 95.1 0.013 4.5E-07 53.1 3.5 26 174-199 39-64 (339)
262 3gfo_A Cobalt import ATP-bindi 95.1 0.011 3.8E-07 52.2 3.0 26 174-199 33-58 (275)
263 3exa_A TRNA delta(2)-isopenten 95.1 0.015 5.1E-07 52.1 3.8 25 175-199 3-27 (322)
264 1oix_A RAS-related protein RAB 95.1 0.014 4.8E-07 48.2 3.5 25 175-199 29-53 (191)
265 1q57_A DNA primase/helicase; d 95.0 0.14 4.7E-06 49.2 10.9 51 174-228 241-291 (503)
266 2zu0_C Probable ATP-dependent 95.0 0.012 4.3E-07 51.6 3.2 25 174-198 45-69 (267)
267 1ji0_A ABC transporter; ATP bi 95.0 0.011 3.7E-07 51.2 2.6 26 174-199 31-56 (240)
268 1g6h_A High-affinity branched- 95.0 0.011 3.6E-07 51.8 2.6 26 174-199 32-57 (257)
269 3cmw_A Protein RECA, recombina 95.0 0.043 1.5E-06 59.9 7.7 88 174-269 382-473 (1706)
270 3zvl_A Bifunctional polynucleo 95.0 0.011 3.8E-07 55.5 2.8 27 173-199 256-282 (416)
271 4g1u_C Hemin import ATP-bindin 95.0 0.012 4.2E-07 51.6 3.0 26 174-199 36-61 (266)
272 4gzl_A RAS-related C3 botulinu 95.0 0.016 5.6E-07 48.3 3.7 38 162-199 17-54 (204)
273 2olj_A Amino acid ABC transpor 94.9 0.011 3.8E-07 51.8 2.6 26 174-199 49-74 (263)
274 2pze_A Cystic fibrosis transme 94.9 0.012 3.9E-07 50.6 2.6 26 174-199 33-58 (229)
275 2ff7_A Alpha-hemolysin translo 94.9 0.012 3.9E-07 51.2 2.6 26 174-199 34-59 (247)
276 1mv5_A LMRA, multidrug resista 94.9 0.013 4.4E-07 50.8 2.9 26 174-199 27-52 (243)
277 2eyu_A Twitching motility prot 94.9 0.016 5.5E-07 50.8 3.5 27 173-199 23-49 (261)
278 1sgw_A Putative ABC transporte 94.9 0.0098 3.4E-07 50.5 2.1 26 174-199 34-59 (214)
279 3cr8_A Sulfate adenylyltranfer 94.9 0.027 9.1E-07 54.8 5.3 44 156-199 348-393 (552)
280 3lv8_A DTMP kinase, thymidylat 94.9 0.041 1.4E-06 47.4 6.0 37 175-213 27-63 (236)
281 1p9r_A General secretion pathw 94.9 0.052 1.8E-06 50.9 7.1 29 171-199 163-191 (418)
282 1vpl_A ABC transporter, ATP-bi 94.8 0.012 4.2E-07 51.3 2.6 26 174-199 40-65 (256)
283 2f9l_A RAB11B, member RAS onco 94.8 0.015 5E-07 48.3 3.0 25 175-199 5-29 (199)
284 2og2_A Putative signal recogni 94.8 0.018 6.2E-07 52.8 3.8 26 174-199 156-181 (359)
285 2r9v_A ATP synthase subunit al 94.8 0.045 1.5E-06 52.1 6.6 97 166-267 165-277 (515)
286 2ixe_A Antigen peptide transpo 94.8 0.013 4.4E-07 51.7 2.6 26 174-199 44-69 (271)
287 1zj6_A ADP-ribosylation factor 94.8 0.033 1.1E-06 45.5 5.0 35 164-199 6-40 (187)
288 2ghi_A Transport protein; mult 94.8 0.013 4.4E-07 51.3 2.6 26 174-199 45-70 (260)
289 3foz_A TRNA delta(2)-isopenten 94.8 0.019 6.4E-07 51.4 3.7 26 174-199 9-34 (316)
290 2v9p_A Replication protein E1; 94.8 0.016 5.5E-07 51.9 3.3 26 174-199 125-150 (305)
291 3sop_A Neuronal-specific septi 94.8 0.017 5.9E-07 50.8 3.5 23 177-199 4-26 (270)
292 2wji_A Ferrous iron transport 94.8 0.018 6E-07 46.2 3.2 24 176-199 4-27 (165)
293 2qi9_C Vitamin B12 import ATP- 94.7 0.014 4.6E-07 50.8 2.6 26 174-199 25-50 (249)
294 3cmw_A Protein RECA, recombina 94.7 0.045 1.5E-06 59.7 7.1 87 174-268 1430-1520(1706)
295 4tmk_A Protein (thymidylate ki 94.7 0.048 1.6E-06 46.1 6.0 52 176-229 4-55 (213)
296 2qe7_A ATP synthase subunit al 94.7 0.1 3.6E-06 49.6 8.8 97 166-267 152-264 (502)
297 2ihy_A ABC transporter, ATP-bi 94.7 0.014 4.6E-07 51.8 2.6 26 174-199 46-71 (279)
298 1a7j_A Phosphoribulokinase; tr 94.7 0.0099 3.4E-07 53.0 1.8 26 174-199 4-29 (290)
299 2yz2_A Putative ABC transporte 94.7 0.014 4.8E-07 51.3 2.6 26 174-199 32-57 (266)
300 1svm_A Large T antigen; AAA+ f 94.7 0.033 1.1E-06 51.4 5.3 26 174-199 168-193 (377)
301 1fx0_A ATP synthase alpha chai 94.7 0.047 1.6E-06 52.0 6.4 86 175-267 163-265 (507)
302 2ocp_A DGK, deoxyguanosine kin 94.7 0.023 7.8E-07 48.9 4.0 25 175-199 2-26 (241)
303 2nq2_C Hypothetical ABC transp 94.7 0.014 4.9E-07 50.8 2.6 26 174-199 30-55 (253)
304 1q3t_A Cytidylate kinase; nucl 94.7 0.02 6.7E-07 49.2 3.5 26 174-199 15-40 (236)
305 1nlf_A Regulatory protein REPA 94.6 0.018 6.3E-07 50.7 3.3 44 174-217 29-79 (279)
306 3fvq_A Fe(3+) IONS import ATP- 94.6 0.019 6.3E-07 52.7 3.3 26 174-199 29-54 (359)
307 2dyk_A GTP-binding protein; GT 94.6 0.022 7.6E-07 45.0 3.5 24 176-199 2-25 (161)
308 2ce2_X GTPase HRAS; signaling 94.6 0.02 6.7E-07 45.3 3.1 23 177-199 5-27 (166)
309 1moz_A ARL1, ADP-ribosylation 94.6 0.025 8.5E-07 45.8 3.8 35 164-198 6-41 (183)
310 3vr4_D V-type sodium ATPase su 94.6 0.04 1.4E-06 51.9 5.5 92 176-267 152-258 (465)
311 4edh_A DTMP kinase, thymidylat 94.5 0.06 2.1E-06 45.5 6.2 32 175-208 6-37 (213)
312 1yrb_A ATP(GTP)binding protein 94.5 0.025 8.7E-07 49.0 3.9 26 174-199 13-38 (262)
313 2zej_A Dardarin, leucine-rich 94.5 0.018 6E-07 47.2 2.7 22 177-198 4-25 (184)
314 2wjg_A FEOB, ferrous iron tran 94.5 0.024 8.1E-07 46.3 3.4 24 175-198 7-30 (188)
315 3end_A Light-independent proto 94.4 0.035 1.2E-06 49.6 4.7 40 173-215 39-78 (307)
316 1z2a_A RAS-related protein RAB 94.4 0.021 7.1E-07 45.4 2.9 25 175-199 5-29 (168)
317 1tq4_A IIGP1, interferon-induc 94.4 0.036 1.2E-06 51.8 4.9 25 174-198 68-92 (413)
318 3hjn_A DTMP kinase, thymidylat 94.4 0.057 1.9E-06 45.0 5.7 87 177-267 2-91 (197)
319 3gqb_B V-type ATP synthase bet 94.4 0.038 1.3E-06 52.0 4.9 101 166-267 137-261 (464)
320 3jvv_A Twitching mobility prot 94.4 0.036 1.2E-06 50.8 4.8 113 173-299 121-234 (356)
321 1u0j_A DNA replication protein 94.4 0.043 1.5E-06 48.0 4.9 36 164-199 91-128 (267)
322 2pjz_A Hypothetical protein ST 94.4 0.018 6.3E-07 50.4 2.6 24 175-198 30-53 (263)
323 2qmh_A HPR kinase/phosphorylas 94.4 0.024 8.1E-07 47.3 3.1 26 174-199 33-58 (205)
324 3nh6_A ATP-binding cassette SU 94.4 0.022 7.4E-07 51.1 3.1 26 174-199 79-104 (306)
325 2orw_A Thymidine kinase; TMTK, 94.3 0.027 9.2E-07 46.5 3.5 24 176-199 4-27 (184)
326 1zu4_A FTSY; GTPase, signal re 94.3 0.028 9.7E-07 50.7 3.8 26 174-199 104-129 (320)
327 1z47_A CYSA, putative ABC-tran 94.3 0.023 7.8E-07 52.0 3.2 26 174-199 40-65 (355)
328 2nzj_A GTP-binding protein REM 94.3 0.02 7E-07 45.9 2.5 25 175-199 4-28 (175)
329 1u8z_A RAS-related protein RAL 94.3 0.024 8.3E-07 44.9 3.0 24 176-199 5-28 (168)
330 3gmt_A Adenylate kinase; ssgci 94.2 0.026 8.9E-07 48.3 3.2 24 176-199 9-32 (230)
331 2ged_A SR-beta, signal recogni 94.2 0.024 8.2E-07 46.5 3.0 26 174-199 47-72 (193)
332 3rlf_A Maltose/maltodextrin im 94.2 0.024 8.2E-07 52.4 3.2 26 174-199 28-53 (381)
333 3ld9_A DTMP kinase, thymidylat 94.2 0.056 1.9E-06 46.0 5.3 29 172-200 18-46 (223)
334 1fzq_A ADP-ribosylation factor 94.2 0.037 1.3E-06 45.1 4.1 26 173-198 14-39 (181)
335 2bbs_A Cystic fibrosis transme 94.2 0.022 7.5E-07 50.7 2.8 26 174-199 63-88 (290)
336 3tui_C Methionine import ATP-b 94.2 0.025 8.4E-07 52.0 3.2 26 174-199 53-78 (366)
337 1m7b_A RND3/RHOE small GTP-bin 94.2 0.027 9.1E-07 46.0 3.1 25 175-199 7-31 (184)
338 1kao_A RAP2A; GTP-binding prot 94.2 0.026 8.7E-07 44.7 3.0 24 176-199 4-27 (167)
339 2yyz_A Sugar ABC transporter, 94.2 0.025 8.4E-07 51.9 3.2 26 174-199 28-53 (359)
340 2vp4_A Deoxynucleoside kinase; 94.2 0.019 6.4E-07 49.1 2.2 25 174-198 19-43 (230)
341 3eph_A TRNA isopentenyltransfe 94.2 0.031 1.1E-06 51.9 3.8 25 175-199 2-26 (409)
342 2gj8_A MNME, tRNA modification 94.2 0.025 8.6E-07 45.8 2.9 24 176-199 5-28 (172)
343 1c1y_A RAS-related protein RAP 94.2 0.026 8.8E-07 44.8 2.9 24 176-199 4-27 (167)
344 3con_A GTPase NRAS; structural 94.2 0.026 8.8E-07 46.2 3.0 24 176-199 22-45 (190)
345 1ek0_A Protein (GTP-binding pr 94.2 0.026 9E-07 44.8 3.0 23 177-199 5-27 (170)
346 2it1_A 362AA long hypothetical 94.2 0.025 8.7E-07 51.9 3.2 26 174-199 28-53 (362)
347 1z08_A RAS-related protein RAB 94.2 0.026 8.9E-07 45.0 2.9 25 175-199 6-30 (170)
348 1r8s_A ADP-ribosylation factor 94.1 0.029 9.8E-07 44.5 3.1 22 178-199 3-24 (164)
349 1f6b_A SAR1; gtpases, N-termin 94.1 0.047 1.6E-06 45.2 4.6 26 173-198 23-48 (198)
350 1z0j_A RAB-22, RAS-related pro 94.1 0.027 9.2E-07 44.9 3.0 24 176-199 7-30 (170)
351 2axn_A 6-phosphofructo-2-kinas 94.1 0.033 1.1E-06 53.8 4.0 26 174-199 34-59 (520)
352 2gks_A Bifunctional SAT/APS ki 94.1 0.063 2.1E-06 52.2 5.9 45 155-199 350-396 (546)
353 3kta_A Chromosome segregation 94.1 0.031 1.1E-06 45.6 3.3 25 175-199 26-50 (182)
354 1g29_1 MALK, maltose transport 94.1 0.027 9.1E-07 52.0 3.2 26 174-199 28-53 (372)
355 1g16_A RAS-related protein SEC 94.1 0.029 1E-06 44.6 3.1 24 176-199 4-27 (170)
356 1v43_A Sugar-binding transport 94.1 0.027 9.3E-07 51.9 3.2 26 174-199 36-61 (372)
357 1ky3_A GTP-binding protein YPT 94.0 0.028 9.6E-07 45.3 3.0 26 174-199 7-32 (182)
358 2fn4_A P23, RAS-related protei 94.0 0.031 1E-06 45.0 3.1 26 174-199 8-33 (181)
359 2ck3_A ATP synthase subunit al 94.0 0.064 2.2E-06 51.1 5.7 102 166-267 152-272 (510)
360 2erx_A GTP-binding protein DI- 94.0 0.028 9.5E-07 44.8 2.8 24 176-199 4-27 (172)
361 1wms_A RAB-9, RAB9, RAS-relate 94.0 0.029 9.9E-07 45.1 3.0 25 175-199 7-31 (177)
362 3q72_A GTP-binding protein RAD 94.0 0.029 9.9E-07 44.6 2.9 22 177-198 4-25 (166)
363 3d31_A Sulfate/molybdate ABC t 94.0 0.023 7.8E-07 51.9 2.5 26 174-199 25-50 (348)
364 2hxs_A RAB-26, RAS-related pro 94.0 0.031 1.1E-06 44.9 3.1 25 175-199 6-30 (178)
365 2www_A Methylmalonic aciduria 94.0 0.067 2.3E-06 48.8 5.7 26 174-199 73-98 (349)
366 3ihw_A Centg3; RAS, centaurin, 94.0 0.03 1E-06 45.9 3.0 25 175-199 20-44 (184)
367 2h92_A Cytidylate kinase; ross 94.0 0.028 9.5E-07 47.4 2.9 24 176-199 4-27 (219)
368 2lkc_A Translation initiation 94.0 0.034 1.2E-06 44.7 3.3 26 174-199 7-32 (178)
369 1lw7_A Transcriptional regulat 93.9 0.033 1.1E-06 51.2 3.6 25 175-199 170-194 (365)
370 3iqw_A Tail-anchored protein t 93.9 0.087 3E-06 47.8 6.2 30 170-199 11-40 (334)
371 1svi_A GTP-binding protein YSX 93.9 0.034 1.2E-06 45.6 3.3 26 174-199 22-47 (195)
372 3q85_A GTP-binding protein REM 93.9 0.031 1E-06 44.6 2.9 22 176-197 3-24 (169)
373 1nrj_B SR-beta, signal recogni 93.9 0.036 1.2E-06 46.5 3.5 26 174-199 11-36 (218)
374 3t1o_A Gliding protein MGLA; G 93.9 0.032 1.1E-06 45.7 3.1 25 175-199 14-38 (198)
375 1m2o_B GTP-binding protein SAR 93.9 0.033 1.1E-06 45.8 3.1 25 175-199 23-47 (190)
376 1m8p_A Sulfate adenylyltransfe 93.9 0.057 2E-06 52.8 5.3 26 174-199 395-420 (573)
377 1r2q_A RAS-related protein RAB 93.9 0.032 1.1E-06 44.3 3.0 24 176-199 7-30 (170)
378 1nij_A Hypothetical protein YJ 93.9 0.032 1.1E-06 50.3 3.2 26 174-199 3-28 (318)
379 3c5c_A RAS-like protein 12; GD 93.8 0.032 1.1E-06 45.7 3.0 25 175-199 21-45 (187)
380 4akg_A Glutathione S-transfera 93.8 0.16 5.4E-06 58.1 9.3 165 166-345 1259-1449(2695)
381 2bme_A RAB4A, RAS-related prot 93.8 0.034 1.2E-06 45.1 3.1 25 175-199 10-34 (186)
382 3oaa_A ATP synthase subunit al 93.8 0.1 3.4E-06 49.6 6.6 98 166-267 152-264 (513)
383 3gd7_A Fusion complex of cysti 93.8 0.033 1.1E-06 51.6 3.3 25 174-198 46-70 (390)
384 1p5z_B DCK, deoxycytidine kina 93.8 0.021 7.1E-07 49.9 1.8 26 174-199 23-48 (263)
385 1oxx_K GLCV, glucose, ABC tran 93.8 0.021 7.3E-07 52.3 1.9 26 174-199 30-55 (353)
386 3pqc_A Probable GTP-binding pr 93.8 0.033 1.1E-06 45.5 2.9 25 175-199 23-47 (195)
387 3llm_A ATP-dependent RNA helic 93.8 0.3 1E-05 41.6 9.1 104 163-269 66-188 (235)
388 1upt_A ARL1, ADP-ribosylation 93.8 0.034 1.2E-06 44.3 3.0 25 175-199 7-31 (171)
389 2cxx_A Probable GTP-binding pr 93.8 0.031 1.1E-06 45.5 2.8 23 177-199 3-25 (190)
390 2y8e_A RAB-protein 6, GH09086P 93.8 0.036 1.2E-06 44.5 3.1 24 176-199 15-38 (179)
391 1z0f_A RAB14, member RAS oncog 93.8 0.034 1.2E-06 44.6 3.0 25 175-199 15-39 (179)
392 4dsu_A GTPase KRAS, isoform 2B 93.8 0.034 1.2E-06 45.2 3.0 24 176-199 5-28 (189)
393 3io3_A DEHA2D07832P; chaperone 93.7 0.074 2.5E-06 48.5 5.4 30 170-199 13-42 (348)
394 2iwr_A Centaurin gamma 1; ANK 93.7 0.027 9.2E-07 45.5 2.3 24 176-199 8-31 (178)
395 2r8r_A Sensor protein; KDPD, P 93.7 0.058 2E-06 45.9 4.4 25 176-200 7-31 (228)
396 3kkq_A RAS-related protein M-R 93.7 0.035 1.2E-06 45.0 3.0 25 175-199 18-42 (183)
397 3fdi_A Uncharacterized protein 93.7 0.047 1.6E-06 45.7 3.8 25 175-199 6-30 (201)
398 2c61_A A-type ATP synthase non 93.7 0.068 2.3E-06 50.5 5.2 102 166-267 142-259 (469)
399 3t5g_A GTP-binding protein RHE 93.7 0.039 1.3E-06 44.6 3.1 25 175-199 6-30 (181)
400 3thx_A DNA mismatch repair pro 93.7 0.065 2.2E-06 55.3 5.4 22 174-195 661-682 (934)
401 2qm8_A GTPase/ATPase; G protei 93.7 0.042 1.4E-06 50.0 3.6 27 173-199 53-79 (337)
402 2yv5_A YJEQ protein; hydrolase 93.6 0.058 2E-06 48.2 4.5 33 163-199 156-188 (302)
403 1mh1_A RAC1; GTP-binding, GTPa 93.6 0.037 1.3E-06 44.8 3.0 24 176-199 6-29 (186)
404 2ewv_A Twitching motility prot 93.6 0.059 2E-06 49.7 4.6 111 173-297 134-245 (372)
405 3bc1_A RAS-related protein RAB 93.6 0.037 1.3E-06 45.1 3.0 25 175-199 11-35 (195)
406 2obl_A ESCN; ATPase, hydrolase 93.6 0.041 1.4E-06 50.3 3.5 26 174-199 70-95 (347)
407 2oil_A CATX-8, RAS-related pro 93.6 0.037 1.3E-06 45.4 2.9 25 175-199 25-49 (193)
408 2v3c_C SRP54, signal recogniti 93.6 0.028 9.5E-07 53.0 2.4 25 175-199 99-123 (432)
409 3dz8_A RAS-related protein RAB 93.6 0.043 1.5E-06 45.0 3.3 25 175-199 23-47 (191)
410 2qnr_A Septin-2, protein NEDD5 93.6 0.036 1.2E-06 49.6 3.0 22 177-198 20-41 (301)
411 2cjw_A GTP-binding protein GEM 93.6 0.041 1.4E-06 45.4 3.1 24 175-198 6-29 (192)
412 3bwd_D RAC-like GTP-binding pr 93.6 0.039 1.3E-06 44.6 3.0 25 175-199 8-32 (182)
413 2efe_B Small GTP-binding prote 93.6 0.038 1.3E-06 44.5 2.9 24 176-199 13-36 (181)
414 1bif_A 6-phosphofructo-2-kinas 93.6 0.046 1.6E-06 52.1 3.9 26 174-199 38-63 (469)
415 2a9k_A RAS-related protein RAL 93.5 0.039 1.3E-06 44.6 3.0 25 175-199 18-42 (187)
416 2fz4_A DNA repair protein RAD2 93.5 0.45 1.5E-05 40.6 9.8 22 178-199 111-132 (237)
417 2b6h_A ADP-ribosylation factor 93.5 0.04 1.4E-06 45.4 3.0 27 172-198 26-52 (192)
418 1gwn_A RHO-related GTP-binding 93.5 0.042 1.4E-06 45.9 3.1 26 174-199 27-52 (205)
419 2bov_A RAla, RAS-related prote 93.5 0.04 1.4E-06 45.6 3.0 26 174-199 13-38 (206)
420 1pui_A ENGB, probable GTP-bind 93.5 0.024 8.2E-07 47.2 1.6 26 173-198 24-49 (210)
421 2fg5_A RAB-22B, RAS-related pr 93.5 0.042 1.4E-06 45.1 3.1 25 175-199 23-47 (192)
422 2zts_A Putative uncharacterize 93.5 0.041 1.4E-06 47.1 3.1 50 174-227 29-78 (251)
423 2atv_A RERG, RAS-like estrogen 93.5 0.053 1.8E-06 44.6 3.6 27 173-199 26-52 (196)
424 2g6b_A RAS-related protein RAB 93.5 0.042 1.4E-06 44.3 3.0 25 175-199 10-34 (180)
425 1cp2_A CP2, nitrogenase iron p 93.4 0.095 3.3E-06 45.6 5.5 37 176-215 2-38 (269)
426 2ew1_A RAS-related protein RAB 93.4 0.044 1.5E-06 45.6 3.1 25 175-199 26-50 (201)
427 1vg8_A RAS-related protein RAB 93.4 0.042 1.4E-06 45.5 3.0 26 174-199 7-32 (207)
428 1ksh_A ARF-like protein 2; sma 93.4 0.041 1.4E-06 44.7 2.9 27 173-199 16-42 (186)
429 3tw8_B RAS-related protein RAB 93.4 0.04 1.4E-06 44.3 2.8 25 175-199 9-33 (181)
430 3v9p_A DTMP kinase, thymidylat 93.4 0.062 2.1E-06 45.9 4.1 25 175-199 25-49 (227)
431 3oes_A GTPase rhebl1; small GT 93.4 0.045 1.5E-06 45.3 3.1 26 174-199 23-48 (201)
432 3cbq_A GTP-binding protein REM 93.4 0.033 1.1E-06 46.1 2.2 24 174-197 22-45 (195)
433 3clv_A RAB5 protein, putative; 93.4 0.043 1.5E-06 45.0 3.0 25 175-199 7-31 (208)
434 3llu_A RAS-related GTP-binding 93.3 0.041 1.4E-06 45.4 2.7 25 175-199 20-44 (196)
435 2gf9_A RAS-related protein RAB 93.3 0.045 1.5E-06 44.7 3.0 25 175-199 22-46 (189)
436 1zd9_A ADP-ribosylation factor 93.3 0.045 1.6E-06 44.7 3.0 25 175-199 22-46 (188)
437 2fh5_B SR-beta, signal recogni 93.3 0.045 1.5E-06 45.7 3.0 25 175-199 7-31 (214)
438 3tkl_A RAS-related protein RAB 93.3 0.046 1.6E-06 44.8 3.0 25 175-199 16-40 (196)
439 3reg_A RHO-like small GTPase; 93.3 0.046 1.6E-06 44.9 3.0 25 175-199 23-47 (194)
440 2gf0_A GTP-binding protein DI- 93.2 0.051 1.7E-06 44.6 3.2 26 174-199 7-32 (199)
441 4b3f_X DNA-binding protein smu 93.2 0.21 7.2E-06 49.5 8.2 61 163-229 195-255 (646)
442 4hlc_A DTMP kinase, thymidylat 93.2 0.11 3.7E-06 43.6 5.2 24 176-199 3-26 (205)
443 2gza_A Type IV secretion syste 93.2 0.04 1.4E-06 50.6 2.7 26 174-199 174-199 (361)
444 3kjh_A CO dehydrogenase/acetyl 93.2 0.11 3.6E-06 44.5 5.3 40 178-220 3-42 (254)
445 2h17_A ADP-ribosylation factor 93.2 0.048 1.7E-06 44.2 2.9 25 175-199 21-45 (181)
446 1zbd_A Rabphilin-3A; G protein 93.2 0.044 1.5E-06 45.3 2.7 24 176-199 9-32 (203)
447 1u0l_A Probable GTPase ENGC; p 93.2 0.076 2.6E-06 47.4 4.4 34 163-199 160-193 (301)
448 2a5j_A RAS-related protein RAB 93.1 0.048 1.6E-06 44.7 2.9 25 175-199 21-45 (191)
449 2o52_A RAS-related protein RAB 93.1 0.047 1.6E-06 45.2 2.8 25 175-199 25-49 (200)
450 1x3s_A RAS-related protein RAB 93.1 0.05 1.7E-06 44.5 3.0 24 176-199 16-39 (195)
451 1z06_A RAS-related protein RAB 93.1 0.05 1.7E-06 44.4 3.0 26 174-199 19-44 (189)
452 2bcg_Y Protein YP2, GTP-bindin 93.1 0.052 1.8E-06 45.0 3.1 25 175-199 8-32 (206)
453 3k53_A Ferrous iron transport 93.1 0.062 2.1E-06 47.0 3.7 25 175-199 3-27 (271)
454 3ch4_B Pmkase, phosphomevalona 93.1 0.078 2.7E-06 44.3 4.0 26 174-199 10-35 (202)
455 2p5s_A RAS and EF-hand domain 93.1 0.05 1.7E-06 45.0 2.9 26 174-199 27-52 (199)
456 1ega_A Protein (GTP-binding pr 93.0 0.052 1.8E-06 48.5 3.2 26 174-199 7-32 (301)
457 2p67_A LAO/AO transport system 93.0 0.066 2.3E-06 48.7 3.9 27 173-199 54-80 (341)
458 2q3h_A RAS homolog gene family 93.0 0.047 1.6E-06 45.1 2.7 26 174-199 19-44 (201)
459 2atx_A Small GTP binding prote 93.0 0.056 1.9E-06 44.3 3.1 25 175-199 18-42 (194)
460 2npi_A Protein CLP1; CLP1-PCF1 92.9 0.048 1.6E-06 51.8 2.9 26 174-199 137-162 (460)
461 2j0v_A RAC-like GTP-binding pr 92.9 0.057 2E-06 45.0 3.1 25 175-199 9-33 (212)
462 2fv8_A H6, RHO-related GTP-bin 92.9 0.057 2E-06 44.9 3.1 25 175-199 25-49 (207)
463 2j1l_A RHO-related GTP-binding 92.9 0.053 1.8E-06 45.5 2.8 26 174-199 33-58 (214)
464 2hup_A RAS-related protein RAB 92.9 0.06 2E-06 44.7 3.1 25 175-199 29-53 (201)
465 4dkx_A RAS-related protein RAB 92.9 0.056 1.9E-06 45.7 3.0 23 177-199 15-37 (216)
466 2afh_E Nitrogenase iron protei 92.8 0.072 2.5E-06 47.0 3.8 25 176-200 3-27 (289)
467 2gco_A H9, RHO-related GTP-bin 92.8 0.062 2.1E-06 44.5 3.1 25 175-199 25-49 (201)
468 2g3y_A GTP-binding protein GEM 92.8 0.058 2E-06 45.4 2.9 23 175-197 37-59 (211)
469 2qu8_A Putative nucleolar GTP- 92.8 0.063 2.2E-06 45.5 3.2 26 174-199 28-53 (228)
470 2qag_B Septin-6, protein NEDD5 92.8 0.052 1.8E-06 50.9 2.8 23 176-198 43-65 (427)
471 2dpy_A FLII, flagellum-specifi 92.7 0.064 2.2E-06 50.6 3.5 26 174-199 156-181 (438)
472 2gk6_A Regulator of nonsense t 92.7 0.17 5.8E-06 50.0 6.6 67 158-229 180-246 (624)
473 2rcn_A Probable GTPase ENGC; Y 92.7 0.061 2.1E-06 49.2 3.2 24 176-199 216-239 (358)
474 3cph_A RAS-related protein SEC 92.7 0.06 2E-06 44.8 2.9 25 175-199 20-44 (213)
475 1x6v_B Bifunctional 3'-phospho 92.7 0.073 2.5E-06 52.4 3.9 26 174-199 51-76 (630)
476 2fu5_C RAS-related protein RAB 92.6 0.036 1.2E-06 44.9 1.4 25 175-199 8-32 (183)
477 1f2t_A RAD50 ABC-ATPase; DNA d 92.6 0.088 3E-06 41.7 3.6 25 175-199 23-47 (149)
478 3lxx_A GTPase IMAP family memb 92.6 0.071 2.4E-06 45.6 3.3 26 174-199 28-53 (239)
479 3hdt_A Putative kinase; struct 92.6 0.096 3.3E-06 44.6 4.0 26 174-199 13-38 (223)
480 3tqf_A HPR(Ser) kinase; transf 92.6 0.093 3.2E-06 42.7 3.7 25 175-199 16-40 (181)
481 3q3j_B RHO-related GTP-binding 92.5 0.066 2.2E-06 44.9 3.0 25 175-199 27-51 (214)
482 4bas_A ADP-ribosylation factor 92.5 0.077 2.6E-06 43.5 3.3 26 174-199 16-41 (199)
483 3def_A T7I23.11 protein; chlor 92.5 0.15 5.1E-06 44.4 5.2 35 165-199 24-60 (262)
484 2h57_A ADP-ribosylation factor 92.4 0.046 1.6E-06 44.7 1.7 25 175-199 21-45 (190)
485 3tmk_A Thymidylate kinase; pho 92.4 0.09 3.1E-06 44.5 3.6 25 175-199 5-29 (216)
486 3euj_A Chromosome partition pr 92.3 0.07 2.4E-06 50.8 3.2 24 176-199 30-53 (483)
487 1mky_A Probable GTP-binding pr 92.3 0.14 4.9E-06 48.1 5.3 43 157-199 151-204 (439)
488 4dzz_A Plasmid partitioning pr 92.3 0.11 3.9E-06 42.9 4.1 42 176-220 2-44 (206)
489 2il1_A RAB12; G-protein, GDP, 92.3 0.07 2.4E-06 43.8 2.7 25 175-199 26-50 (192)
490 2f7s_A C25KG, RAS-related prot 92.2 0.066 2.2E-06 44.8 2.5 25 175-199 25-49 (217)
491 1yqt_A RNAse L inhibitor; ATP- 92.2 0.074 2.5E-06 51.6 3.2 25 175-199 47-71 (538)
492 3iev_A GTP-binding protein ERA 92.1 0.075 2.6E-06 47.6 3.0 26 174-199 9-34 (308)
493 1yqt_A RNAse L inhibitor; ATP- 92.1 0.075 2.6E-06 51.6 3.2 25 175-199 312-336 (538)
494 2xtp_A GTPase IMAP family memb 92.1 0.099 3.4E-06 45.3 3.6 26 174-199 21-46 (260)
495 3ozx_A RNAse L inhibitor; ATP 92.0 0.067 2.3E-06 51.9 2.6 25 175-199 294-318 (538)
496 1h65_A Chloroplast outer envel 92.0 0.18 6.2E-06 44.0 5.3 26 174-199 38-63 (270)
497 2orv_A Thymidine kinase; TP4A 91.9 0.17 5.9E-06 43.1 4.7 105 175-295 19-125 (234)
498 2qag_C Septin-7; cell cycle, c 91.9 0.066 2.3E-06 50.1 2.3 22 178-199 34-55 (418)
499 3mfy_A V-type ATP synthase alp 91.9 0.6 2.1E-05 44.9 8.9 57 166-227 217-275 (588)
500 3cpj_B GTP-binding protein YPT 91.8 0.086 2.9E-06 44.4 2.9 25 175-199 13-37 (223)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=1.1e-29 Score=250.35 Aligned_cols=183 Identities=14% Similarity=0.149 Sum_probs=150.5
Q ss_pred CccccchHHHHHHHHHHhcC---CcEEEEEEecCCCcHHHHHHHHHH--hhccCCCCCCEEEEEEeCCcc--CHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMED---TIGIVGLYGMGGVGKTTLLTQINN--KFLVSPNHFDFVIWVVVSKDL--QLEKIQEC 226 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~ 226 (352)
+..|||++++++|.++|..+ ..++|+|+||||+||||||+.+|+ +. .+..+|++++||++++.+ ++..++..
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 33359999999999999754 679999999999999999999998 34 558899999999999985 79999999
Q ss_pred HHHHcCCCCC-----CCCCcCHHHHHHHHHHHhCCC-cEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHh
Q 047607 227 VAEKIGLFNE-----SWSSKNVQEKAQEIFKILSDK-KFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCG 300 (352)
Q Consensus 227 i~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~ 300 (352)
|+.+++.... .....+...+...+++.|+++ ||||||||+|+..++ .+ +. .+||+||||||+..++.
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~~--~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----AQ--ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----HH--HTTCEEEEEESBGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----cc--cCCCEEEEEcCCHHHHH
Confidence 9999976522 112335567789999999996 999999999998754 11 11 37899999999999998
Q ss_pred hcc-CCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhhhhc
Q 047607 301 QME-AHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQAEVI 346 (352)
Q Consensus 301 ~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~iv~ 346 (352)
.++ ...+|+|++|+.++||+||.+.+|... .++.+++++++|+-
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~ 324 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIE 324 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHH
Confidence 875 446799999999999999999998754 35778889988873
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.91 E-value=3.7e-24 Score=229.20 Aligned_cols=182 Identities=20% Similarity=0.285 Sum_probs=142.4
Q ss_pred CCCccccchHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhhccCCC-CCCEEEEEEeCCcc--CHHHHHHH
Q 047607 152 LPTSVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPN-HFDFVIWVVVSKDL--QLEKIQEC 226 (352)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~--~~~~~~~~ 226 (352)
.++.||||++++++|.++|.. ++.++++|+||||+||||||++++++...... .|+.++|+++++.. .....+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 356799999999999999963 57899999999999999999999998632244 45688899998854 34455677
Q ss_pred HHHHcCCCCC--CCCCcCHHHHHHHHHHHhCCC--cEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHhh-
Q 047607 227 VAEKIGLFNE--SWSSKNVQEKAQEIFKILSDK--KFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCGQ- 301 (352)
Q Consensus 227 i~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~- 301 (352)
++..+..... .....+.+.+...++..|.++ ||||||||+|+..+|..+ .+||+||||||++.++..
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHHhh
Confidence 7777764332 123467788889999999877 999999999998877654 468999999999999854
Q ss_pred ccCCceeecCC-CCHHHHHHHHHHhhccccccCCCCcHHHHhhhh
Q 047607 302 MEAHRSFKVEC-LAYEDAWELFEEKVGREILLYIPLETNIHQAEV 345 (352)
Q Consensus 302 ~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~iv 345 (352)
+.....+.+.+ |+.+++++||...++... +.+.+++++|+
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~ 314 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSII 314 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHH
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHH
Confidence 45667889996 999999999999885433 44455566654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.90 E-value=1.9e-24 Score=219.40 Aligned_cols=165 Identities=15% Similarity=0.214 Sum_probs=130.3
Q ss_pred CccccchHHHHHHHHHHhc-CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCE-EEEEEeCCccCHHHHHHHHHHHc
Q 047607 154 TSVVGLQSTFERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDF-VIWVVVSKDLQLEKIQECVAEKI 231 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l 231 (352)
+..|||+.++++|.++|.. +..++|+|+||||+||||||++++++. .+..+|+. ++|+++++.++...++..|+..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3459999999999999976 567999999999999999999999876 45678986 99999999999888888887764
Q ss_pred CCCC---C-CCC-----CcCHHHHHHHHHHHh---CCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHH
Q 047607 232 GLFN---E-SWS-----SKNVQEKAQEIFKIL---SDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVC 299 (352)
Q Consensus 232 ~~~~---~-~~~-----~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~ 299 (352)
+... . ... ..+.+.+...+++.| .++|+||||||+|+.+.|+.+ .+||+||||||+..++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f--------~pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--------NLSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH--------HSSCCEEEECSCSHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh--------CCCeEEEEeccChHHH
Confidence 3211 0 000 123345566777766 789999999999998888764 2579999999999988
Q ss_pred hhccCCceeecC------CCCHHHHHHHHHHhhc
Q 047607 300 GQMEAHRSFKVE------CLAYEDAWELFEEKVG 327 (352)
Q Consensus 300 ~~~~~~~~~~l~------~L~~~e~~~Lf~~~~~ 327 (352)
..+.....+.++ +|+.+|||+||.+.+.
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcC
Confidence 655444456666 9999999999999853
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.87 E-value=5.5e-22 Score=197.23 Aligned_cols=167 Identities=20% Similarity=0.305 Sum_probs=126.2
Q ss_pred CCCccccchHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhhccC-CCCC-CEEEEEEeCCccCHHHHHHHH
Q 047607 152 LPTSVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVS-PNHF-DFVIWVVVSKDLQLEKIQECV 227 (352)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~~i 227 (352)
.++.||||+.++++|.++|.. ++.++++|+||||+||||||.+++++. .. ..+| +.++|++++.. +...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 356799999999999999974 467899999999999999999999876 33 4668 48999999775 333344333
Q ss_pred ---HHHcCCCC--CCCCCcCHHHHHHHHHHHhCC--CcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHh
Q 047607 228 ---AEKIGLFN--ESWSSKNVQEKAQEIFKILSD--KKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCG 300 (352)
Q Consensus 228 ---~~~l~~~~--~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~ 300 (352)
+..++... ......+.......+...+.+ +++||||||+|+...+..+ ..|++||||||+..++.
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------cCCCeEEEECCCcHHHH
Confidence 44454211 112345667788888888865 7899999999987665432 36799999999998876
Q ss_pred hccCCceeec---CCCCHHHHHHHHHHhhccc
Q 047607 301 QMEAHRSFKV---ECLAYEDAWELFEEKVGRE 329 (352)
Q Consensus 301 ~~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~ 329 (352)
.+. ...+.+ ++|+.+++++||...++..
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~ 302 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMK 302 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCC
Confidence 653 334443 6999999999999998763
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.64 E-value=4.8e-16 Score=120.17 Aligned_cols=83 Identities=10% Similarity=0.066 Sum_probs=73.9
Q ss_pred cchhhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchHHHHHHHHHHHHHHHHHHH
Q 047607 9 FSCDGTISQCLDCSVRQAGYICYLRDNLKDLRRESQKLIEERNDVRIRVIVAEQQQ-MKRLERVQGWFSRVQDVLYEVDR 87 (352)
Q Consensus 9 ~~~~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~Wl~~l~~~a~~~ed 87 (352)
|+++++++||.+++.+|+.++.+++++++.|+++|+.|+++|.+ ++.+. ...++.++.|+.+||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999988 45442 22478999999999999999999
Q ss_pred HHhhhhHHhhh
Q 047607 88 LTLESNREDAK 98 (352)
Q Consensus 88 ~ld~~~~~~~~ 98 (352)
+||+|.++...
T Consensus 74 ~iD~f~~~~~~ 84 (115)
T 3qfl_A 74 VVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999988754
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.50 E-value=6.7e-14 Score=132.42 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=116.7
Q ss_pred CCccccchHHHHHHHHHH-hc------CCcEEEEE--EecCCCcHHHHHHHHHHhhccC--CCCCC-EEEEEEeCCccCH
Q 047607 153 PTSVVGLQSTFERVWSCV-ME------DTIGIVGL--YGMGGVGKTTLLTQINNKFLVS--PNHFD-FVIWVVVSKDLQL 220 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~--~~~f~-~~~wv~~s~~~~~ 220 (352)
++.++||++++++|.++| .. .....+.| +|++|+|||||++.+++..... ...|. ..+|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999888 42 24567777 9999999999999999877210 01122 4688888777789
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCcc--------cccccccCC---CCCCC--C
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILS--DKKFMLLLDDIWEPV--------DLAQVGLPI---PSPRS--T 285 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~--------~~~~l~~~~---~~~~~--~ 285 (352)
..++..++..++..... ...+.......+...+. +++++|||||+|... .+..+...+ +.. . .
T Consensus 101 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~-~~~~ 178 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR-DGVN 178 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT-TSCC
T ss_pred HHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC-CCCc
Confidence 99999999998754321 23345566667777664 679999999997632 122221111 211 1 3
Q ss_pred CcEEEEecCChHHHhhc--------c-CCceeecCCCCHHHHHHHHHHhh
Q 047607 286 SSKVVFTSRDFEVCGQM--------E-AHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 286 gs~IiiTTr~~~v~~~~--------~-~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
+..+|+||+...+...+ . ....+.+.+|+.++.+++|...+
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHH
Confidence 45588888755432111 1 12238999999999999998764
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=4e-13 Score=125.96 Aligned_cols=173 Identities=13% Similarity=0.038 Sum_probs=120.8
Q ss_pred CCccccchHHHHHHHHHHhc----CCcEEEEEEecCCCcHHHHHHHHHHhhccC----CCC-CCEEEEEEeCCcc-CHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVS----PNH-FDFVIWVVVSKDL-QLEK 222 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~~-f~~~~wv~~s~~~-~~~~ 222 (352)
+..++||+++++++.+++.. ...+.+.|+|++|+||||||+.+++..... ... ....+|++++... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 36799999999999877753 346789999999999999999999876211 011 3467889888777 8888
Q ss_pred HHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc--cccc-ccCCCCCCCCCcEEEEecCChHH-
Q 047607 223 IQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD--LAQV-GLPIPSPRSTSSKVVFTSRDFEV- 298 (352)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l-~~~~~~~~~~gs~IiiTTr~~~v- 298 (352)
++..++..+..........+.......+...+..++.+|||||++.... +... ...+... ..+..+|+||+....
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~-~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS-DANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS-SSCEEEEEECSSTTTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC-CcceEEEEEECCCchH
Confidence 8899888873222111334456677788888877777999999976422 1222 2222222 256888988886532
Q ss_pred ---Hhhc--cCCceeecCCCCHHHHHHHHHHhh
Q 047607 299 ---CGQM--EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 299 ---~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
...+ .....+.+++++.++..++|...+
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 1111 112388999999999999999975
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=3.8e-13 Score=125.85 Aligned_cols=172 Identities=11% Similarity=0.130 Sum_probs=117.3
Q ss_pred CCccccchHHHHHHHHHHhc----CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
++.|+||+++++.|.+++.. .....+.|+|++|+|||||++.+++........-...+|+++....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999998873 45678999999999999999999987721111023578888877778888888888
Q ss_pred HHcCCCCCCCCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCcc------cccccccCCCC-CCCCCcEEEEecCChHHH
Q 047607 229 EKIGLFNESWSSKNVQEKAQEIFKILS--DKKFMLLLDDIWEPV------DLAQVGLPIPS-PRSTSSKVVFTSRDFEVC 299 (352)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~l~~~~~~-~~~~gs~IiiTTr~~~v~ 299 (352)
..++..... ...+.......+.+.+. +++.+|||||++... .+..+...+.. . ..+..+|+||+.....
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVN-KSKISFIGITNDVKFV 176 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCC-C--EEEEEEESCGGGG
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcC-CCeEEEEEEECCCChH
Confidence 887653321 23345566666666664 458999999997632 12222111110 1 3456778888866432
Q ss_pred hhcc-------CCceeecCCCCHHHHHHHHHHhh
Q 047607 300 GQME-------AHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 300 ~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
..+. ....+.+++++.++..++|.+.+
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 2221 11478999999999999999865
No 9
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.41 E-value=8.4e-13 Score=121.86 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=110.4
Q ss_pred CCccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc------CHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL------QLEKIQEC 226 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~------~~~~~~~~ 226 (352)
++.|+||+++++.|.+++... +++.|+|++|+|||||++.+.+.. . .+|+++.... +...++..
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHH
Confidence 467999999999999998764 799999999999999999999875 1 7788875543 56667777
Q ss_pred HHHHcCCC--------------CC--CCCCcCHHHHHHHHHHHhCC-CcEEEEEeCCCCccc--------ccccccCCCC
Q 047607 227 VAEKIGLF--------------NE--SWSSKNVQEKAQEIFKILSD-KKFMLLLDDIWEPVD--------LAQVGLPIPS 281 (352)
Q Consensus 227 i~~~l~~~--------------~~--~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~--------~~~l~~~~~~ 281 (352)
+...+... .. .....+.......+.+.... ++++|||||++.... +..+...+.+
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 76665420 00 00123455566666665543 489999999977432 1111111111
Q ss_pred CCCCCcEEEEecCChHH-Hhh---------c-c-CCceeecCCCCHHHHHHHHHHhh
Q 047607 282 PRSTSSKVVFTSRDFEV-CGQ---------M-E-AHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 282 ~~~~gs~IiiTTr~~~v-~~~---------~-~-~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
. ..+.++|+|++.... ... . + ....+.+.+|+.+|+.+++...+
T Consensus 161 ~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 161 S-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp H-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred h-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH
Confidence 1 247889999987653 221 1 1 12368999999999999998754
No 10
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=3.1e-12 Score=118.27 Aligned_cols=162 Identities=11% Similarity=0.143 Sum_probs=104.7
Q ss_pred CCccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc-----cCHHHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-----LQLEKIQECV 227 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~i 227 (352)
++.|+||+++++.|.+ +.. +++.|+|++|+|||||++.+.+.. .. ..+|+++... .+...+...+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHH
Confidence 4679999999999999 765 699999999999999999999887 22 2588887643 3444555444
Q ss_pred HHHcC--------------C------CCC--CC-----CCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc-----ccccc
Q 047607 228 AEKIG--------------L------FNE--SW-----SSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV-----DLAQV 275 (352)
Q Consensus 228 ~~~l~--------------~------~~~--~~-----~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----~~~~l 275 (352)
...+. . +.. .. .......+...+.+.-. ++++|||||++... ++..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 44331 0 000 00 12234445555554333 48999999997632 22222
Q ss_pred ccCCCCCCCCCcEEEEecCChHHHh-h---------c-cC-CceeecCCCCHHHHHHHHHHhh
Q 047607 276 GLPIPSPRSTSSKVVFTSRDFEVCG-Q---------M-EA-HRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 276 ~~~~~~~~~~gs~IiiTTr~~~v~~-~---------~-~~-~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
...+.+. ..+.++|+|++...... . . +. ...+.+.+|+.+++.+++...+
T Consensus 161 l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 161 LAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF 222 (357)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH
Confidence 2222221 24688999999865322 1 1 11 2478999999999999998865
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=2.7e-12 Score=120.08 Aligned_cols=173 Identities=13% Similarity=0.138 Sum_probs=118.5
Q ss_pred CCccccchHHHHHHHHHHhc----CCcEEEEEEecCCCcHHHHHHHHHHhhccCC---CCCCEEEEEEeCCccCHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSP---NHFDFVIWVVVSKDLQLEKIQE 225 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~ 225 (352)
++.++||+++++++..++.. ...+.+.|+|++|+||||||+.+++...... ..-...+|+++....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 36799999999999998853 4567899999999999999999998772110 1123578899888889999999
Q ss_pred HHHHHcCCCCCCCCCcCHHHHHHHHHHHh--CCCcEEEEEeCCCCccc----cccc---ccCCCCCC-CCCcEEEEecCC
Q 047607 226 CVAEKIGLFNESWSSKNVQEKAQEIFKIL--SDKKFMLLLDDIWEPVD----LAQV---GLPIPSPR-STSSKVVFTSRD 295 (352)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~----~~~l---~~~~~~~~-~~gs~IiiTTr~ 295 (352)
.++..++..... ...+.......+...+ .+++.+|+|||++.... .+.+ ........ ..+..+|.||+.
T Consensus 98 ~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 98 AIAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 999999654321 3344566677777776 34688999999986422 1111 11111100 234567777765
Q ss_pred hHH--------HhhccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 296 FEV--------CGQMEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 296 ~~v--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
... ...+ ....+.+++++.++..++|...+.
T Consensus 177 ~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 177 LGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp STTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHH
Confidence 422 2221 114789999999999999998863
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.37 E-value=1.2e-11 Score=115.91 Aligned_cols=171 Identities=12% Similarity=0.110 Sum_probs=121.0
Q ss_pred CCccccchHHHHHHHHHHhc----CCcE--EEEEEecCCCcHHHHHHHHHHhhccCCCC-CCEEEEEEeCCccCHHHHHH
Q 047607 153 PTSVVGLQSTFERVWSCVME----DTIG--IVGLYGMGGVGKTTLLTQINNKFLVSPNH-FDFVIWVVVSKDLQLEKIQE 225 (352)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~ 225 (352)
++.++||+++++++..++.. .... .+.|+|++|+|||||++.+++.. ... -...+|++++...+...+..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHH
Confidence 36799999999999988865 3334 89999999999999999999987 232 23578889888888889999
Q ss_pred HHHHHcCCCCCCCCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCc--ccccccccCCCCCCC---CCcEEEEecCChHH
Q 047607 226 CVAEKIGLFNESWSSKNVQEKAQEIFKILS--DKKFMLLLDDIWEP--VDLAQVGLPIPSPRS---TSSKVVFTSRDFEV 298 (352)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~---~gs~IiiTTr~~~v 298 (352)
.++..++..... ...+.......+...+. +++.+|+|||++.. ..+..+...+..... .+..+|++|+....
T Consensus 93 ~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 93 EIARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 999998654321 23345666666666653 56889999999764 223333222222101 46788888876644
Q ss_pred Hhhcc-------CCceeecCCCCHHHHHHHHHHhhc
Q 047607 299 CGQME-------AHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 299 ~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
...+. ....+.+.+++.++..+++...+.
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 32221 123689999999999999998764
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.20 E-value=1.3e-10 Score=99.76 Aligned_cols=156 Identities=16% Similarity=0.125 Sum_probs=98.3
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGL 233 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (352)
..++|+++.++.+.+++.....+.+.|+|++|+|||+||+.+++... ....-...+.++.+.......+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 46899999999999999877665699999999999999999998762 11111234445544433333222222111110
Q ss_pred CCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCChHH-Hh-hccCCceee
Q 047607 234 FNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRDFEV-CG-QMEAHRSFK 309 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~~~v-~~-~~~~~~~~~ 309 (352)
.. .-.+++.+|++||++.. ..+..+...+... ..++++|+||+...- .. .......+.
T Consensus 96 ~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 96 AP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMY-SKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp CC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 00 01257889999999764 2233333333222 456788888876531 11 112234789
Q ss_pred cCCCCHHHHHHHHHHhhcc
Q 047607 310 VECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 310 l~~L~~~e~~~Lf~~~~~~ 328 (352)
+.+++.++..+++.+.+..
T Consensus 158 ~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987743
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.19 E-value=1.2e-10 Score=101.12 Aligned_cols=166 Identities=12% Similarity=0.124 Sum_probs=95.8
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
..++||+..++.|..++.... .+.+.|+|++|+||||||+.+++... ....+.. ..+... .. ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~---~~~~~~---~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA---TPCGVC---DN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCS---SCCSCS---HH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC---CCCccc---HH-HHHHhccCC
Confidence 468999999999999997654 45899999999999999999998773 1111100 000000 00 001110000
Q ss_pred CCC--CCCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCChH-HHh-h
Q 047607 233 LFN--ESWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRDFE-VCG-Q 301 (352)
Q Consensus 233 ~~~--~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~~~-v~~-~ 301 (352)
... ..............+.+.+ .+++.+||+||++.. ..+..+...+... ..+..+|+||+... +.. .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-CCceEEEEEeCChHhCCHHH
Confidence 000 0000001111222222222 346799999999763 3444444333333 45788888887643 211 1
Q ss_pred ccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 302 MEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
......+.+.+++.++..+++...+..
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 122357899999999999999987754
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=3.5e-10 Score=103.07 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=96.8
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGL 233 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (352)
.+++|++..++.|.+++..+..+.+.++|++|+||||+|+.+++.... .......++++.+.......+ .+++..+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~ 98 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGIDVV-RNQIKHFAQ 98 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSHHHH-HTHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccChHHH-HHHHHHHHh
Confidence 468999999999999998776555999999999999999999988621 111112444444332222211 111111100
Q ss_pred CCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCChH-HHhh-ccCCcee
Q 047607 234 FNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRDFE-VCGQ-MEAHRSF 308 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~~~-v~~~-~~~~~~~ 308 (352)
. ...+ .+++.++|+||++.. ..+..+...+... ..++++|+||+... +... ......+
T Consensus 99 ~----------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 99 K----------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-SNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp B----------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-TTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred c----------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-CCCceEEEEeCChhhchhHHHhhceEE
Confidence 0 0011 346889999999764 2333343333222 45678888887643 1111 1233478
Q ss_pred ecCCCCHHHHHHHHHHhhcc
Q 047607 309 KVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 309 ~l~~L~~~e~~~Lf~~~~~~ 328 (352)
.+.+++.++..+++...+..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHH
Confidence 99999999999999987643
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.02 E-value=2.8e-09 Score=96.78 Aligned_cols=170 Identities=8% Similarity=0.062 Sum_probs=106.9
Q ss_pred ccccchHHHHHHHHHHhc----CCcEEEEEEecCCCcHHHHHHHHHHhhccCCC--CC--CEEEEEEeCCccCHHHHHHH
Q 047607 155 SVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPN--HF--DFVIWVVVSKDLQLEKIQEC 226 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~f--~~~~wv~~s~~~~~~~~~~~ 226 (352)
.+.||++++++|...|.. ...+.+.|+|++|+|||++++.+++....... .. -..+++++....+...+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 378999999998877753 57788999999999999999999998842211 11 14678888888889999999
Q ss_pred HHHHcCCCCCCCCCcCHHHHHHHHHHHh---CCCcEEEEEeCCCCcccccccccCC--CCCCCCCcEEEEecCChH----
Q 047607 227 VAEKIGLFNESWSSKNVQEKAQEIFKIL---SDKKFMLLLDDIWEPVDLAQVGLPI--PSPRSTSSKVVFTSRDFE---- 297 (352)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~~--~~~~~~gs~IiiTTr~~~---- 297 (352)
|++++...... .... ......+...+ .+++++++||+++...+-+-+...+ +........+|.++...+
T Consensus 101 I~~~L~g~~~~-~~~~-~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENLC-GDIS-LEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC---CCCC-HHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCCC-chHH-HHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 99999643211 1222 23333333333 4567999999998754222121111 111011223343443321
Q ss_pred -H----HhhccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 298 -V----CGQMEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 298 -v----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
+ ...++ ...+.+.+++.+|-.+++.+++.
T Consensus 179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 11221 14689999999999999999873
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.96 E-value=3.9e-10 Score=94.36 Aligned_cols=151 Identities=16% Similarity=0.164 Sum_probs=86.7
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCC----CCCEEEEEEeCCccCHHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPN----HFDFVIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~ 229 (352)
..++||++.++++.+++.......+.|+|++|+|||+||+.+++....... .....++++++. +.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----- 90 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV----- 90 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH-----
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh-----
Confidence 468999999999999998776778899999999999999999988632111 112344544321 11
Q ss_pred HcCCCCCCCCCcCHHHHHHHHHHHh--CCCcEEEEEeCCCCcc---------cccccccCCCCCCCCCcEEEEecCChHH
Q 047607 230 KIGLFNESWSSKNVQEKAQEIFKIL--SDKKFMLLLDDIWEPV---------DLAQVGLPIPSPRSTSSKVVFTSRDFEV 298 (352)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~~gs~IiiTTr~~~v 298 (352)
.... ...........+...+ .+++.+|+|||++... .+..+...+.. ..+..+|.||.....
T Consensus 91 --~~~~---~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 91 --AGAK---YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEY 163 (195)
T ss_dssp --TTTC---SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHH
T ss_pred --ccCC---ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHH
Confidence 0000 0111111222222222 4567899999997541 11111111111 234567777765543
Q ss_pred Hhh-------ccCCceeecCCCCHHHHHHHH
Q 047607 299 CGQ-------MEAHRSFKVECLAYEDAWELF 322 (352)
Q Consensus 299 ~~~-------~~~~~~~~l~~L~~~e~~~Lf 322 (352)
... ...-..+.+.+++.++..+++
T Consensus 164 ~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 164 RQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 211 111235788899888876654
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=1.6e-09 Score=98.87 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=94.8
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGL 233 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (352)
.+++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++... ....-...+.++.+.......+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~---------- 93 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINVI---------- 93 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHTT----------
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHHH----------
Confidence 46899999999999999887766699999999999999999998862 1110112344443332111110
Q ss_pred CCCCCCCcCHHHHHHHHHHH--h-CCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCChHH-Hhh-ccCCc
Q 047607 234 FNESWSSKNVQEKAQEIFKI--L-SDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRDFEV-CGQ-MEAHR 306 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~~~v-~~~-~~~~~ 306 (352)
......+... + .+++.++++||++.. ..+..+...+... ..++++|+||....- ... .....
T Consensus 94 ----------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 94 ----------REKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-SSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp ----------HHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred ----------HHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-CCCCeEEEEeCCccccCHHHHhhCc
Confidence 0011111110 1 256789999999764 2333343333222 456788888876431 111 11224
Q ss_pred eeecCCCCHHHHHHHHHHhhcc
Q 047607 307 SFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 307 ~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
.+.+.+++.++...++...+..
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~ 184 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAEN 184 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHT
T ss_pred EEEecCCCHHHHHHHHHHHHHh
Confidence 7899999999999999887643
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.83 E-value=9e-09 Score=92.24 Aligned_cols=166 Identities=15% Similarity=0.114 Sum_probs=97.6
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
.+++|.++.+++|.+.+.. .....+.|+|++|+|||+||+.+++.. ... .+.++++.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHH-
Confidence 5689999999998887743 345679999999999999999999887 222 23333322100
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc----------------cccccccCCC--CC
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV----------------DLAQVGLPIP--SP 282 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~ 282 (352)
. ............+......+..+|+|||++... .+..+...+. ..
T Consensus 90 -------------~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 -------------K---FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -------------C---STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -------------h---ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 011111112222333334567899999996521 0111111111 11
Q ss_pred CCCCcEEEEecCChHH-----HhhccCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 283 RSTSSKVVFTSRDFEV-----CGQMEAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 283 ~~~gs~IiiTTr~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
..+..||.||..... .........+.+.+++.++..++|...+.......+..+..+++.
T Consensus 154 -~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~ 218 (285)
T 3h4m_A 154 -RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKM 218 (285)
T ss_dssp -SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHH
T ss_pred -CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHH
Confidence 346778888875432 111012346899999999999999988755443334446665544
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.80 E-value=1.4e-08 Score=92.13 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=95.7
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC-EEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD-FVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|++..++.+.+++..+..+.+.++|++|+|||++|+.+.+... ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~------------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERG------------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTC-------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccC-------------
Confidence 45899999999999998877655699999999999999999998862 11111 233344433211
Q ss_pred CCCCCCCCcCHHHHHHHHHHH--h-CCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCChH-HHhh-ccCC
Q 047607 233 LFNESWSSKNVQEKAQEIFKI--L-SDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRDFE-VCGQ-MEAH 305 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~~~-v~~~-~~~~ 305 (352)
..........+... + .+++.++++||++.. .....+...+... ..++++|+||.... +... ....
T Consensus 82 -------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 82 -------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-SKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp -------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSS-SSSEEEEEEESCGGGSCHHHHTTC
T ss_pred -------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhc-CCCCeEEEEeCChhhcchHHHhhC
Confidence 01111111111111 1 256789999999764 2334444444433 45678888876543 2111 1223
Q ss_pred ceeecCCCCHHHHHHHHHHhhcc
Q 047607 306 RSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
..+.+.+++.++..+++...+..
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHT
T ss_pred eEEEecCCCHHHHHHHHHHHHHH
Confidence 47899999999999999877643
No 21
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.68 E-value=6.2e-08 Score=92.37 Aligned_cols=156 Identities=16% Similarity=0.149 Sum_probs=91.7
Q ss_pred ccc-cchHH--HHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 047607 155 SVV-GLQST--FERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK 230 (352)
Q Consensus 155 ~~v-Gr~~~--~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 230 (352)
+|+ |.... ...+........ ...+.|+|++|+||||||+.+++.... ...-..+++++++ .+..++...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHH------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHH------HHHHHHHHH
Confidence 455 64433 333444444333 678999999999999999999997721 1111234555543 234444444
Q ss_pred cCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc----ccccccCCCCCCCCCcEEEEecCCh---------H
Q 047607 231 IGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD----LAQVGLPIPSPRSTSSKVVFTSRDF---------E 297 (352)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~~gs~IiiTTr~~---------~ 297 (352)
+... . ...+...+..+.-+|+|||++.... .+.+...+......|..||+||.+. .
T Consensus 179 ~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 179 MKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 4221 1 1223344444677999999975431 1222222211003567888888752 2
Q ss_pred HHhhccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 298 VCGQMEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 298 v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+...+.....+.+++++.++-.+++.+.+..
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 3333444467899999999999999988753
No 22
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.63 E-value=4.1e-07 Score=86.72 Aligned_cols=144 Identities=14% Similarity=0.189 Sum_probs=89.2
Q ss_pred CccccchHHH---HHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 047607 154 TSVVGLQSTF---ERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK 230 (352)
Q Consensus 154 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 230 (352)
.+++|.+..+ ..|...+.....+.+.|+|++|+||||||+.+.+.. ...| ..++... .....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f---~~l~a~~-~~~~~-------- 90 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV---ERISAVT-SGVKE-------- 90 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE---EEEETTT-CCHHH--------
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe---EEEEecc-CCHHH--------
Confidence 4689999888 778888888888889999999999999999999987 3332 2222211 11111
Q ss_pred cCCCCCCCCCcCHHHHHHHHHH-HhCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEE-EecCChH--H-Hhhcc
Q 047607 231 IGLFNESWSSKNVQEKAQEIFK-ILSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVV-FTSRDFE--V-CGQME 303 (352)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~Ii-iTTr~~~--v-~~~~~ 303 (352)
.......... ...+++.+|+||+++.. ...+.+...+..+ ...+| .||.+.. + .....
T Consensus 91 ------------ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~---~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 91 ------------IREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG---TITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp ------------HHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT---SCEEEEEESSCGGGSSCHHHHT
T ss_pred ------------HHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC---ceEEEecCCCCcccccCHHHhC
Confidence 1111111111 12467889999999864 3344444444332 23333 3555542 1 11222
Q ss_pred CCceeecCCCCHHHHHHHHHHhhc
Q 047607 304 AHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 304 ~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
...++.+.+++.++...++.+.+.
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHH
Confidence 335789999999999999988764
No 23
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.60 E-value=2.5e-07 Score=85.93 Aligned_cols=165 Identities=11% Similarity=0.096 Sum_probs=92.4
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+.+... ....+. ...+... .....+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~---~~~~~~~----~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGIT---ATPCGVC----DNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSC---SSCCSSS----HHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCC---CCCCccc----HHHHHHhccCC
Confidence 468999999999999997764 45789999999999999999998772 111110 0000000 00111111000
Q ss_pred -----CCC-CCCCCcCHHHHHHHHHHH-hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCChH-HH-hh
Q 047607 233 -----LFN-ESWSSKNVQEKAQEIFKI-LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRDFE-VC-GQ 301 (352)
Q Consensus 233 -----~~~-~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~~~-v~-~~ 301 (352)
... ..........+...+... ..+++.++|+||++.. ..+..+...+... ..+..+|++|.... +. ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC-CSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC-CCceEEEEEeCChHhCcHHH
Confidence 000 000112222222222111 1346789999999764 2233333333222 34567777776432 21 11
Q ss_pred ccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 302 MEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
......+.+.+++.++..+++.+.+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~ 192 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILN 192 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHH
Confidence 12335789999999999999987763
No 24
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.60 E-value=1.6e-07 Score=84.93 Aligned_cols=150 Identities=11% Similarity=0.119 Sum_probs=87.1
Q ss_pred ccccchHHHHHHHHHHh---------------cCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC--EEEEEEeCCc
Q 047607 155 SVVGLQSTFERVWSCVM---------------EDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD--FVIWVVVSKD 217 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~ 217 (352)
.++|.++.++.|.+.+. ......+.|+|++|+|||+||+.+.+.... ..... ..+.++.+.-
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHHHh
Confidence 58999988888876653 234457999999999999999988887632 11111 2333332111
Q ss_pred cCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc-----------ccccccccCCCCCCCCC
Q 047607 218 LQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP-----------VDLAQVGLPIPSPRSTS 286 (352)
Q Consensus 218 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~g 286 (352)
.. . ............+... +..+|+||+++.. .....+...+... ..+
T Consensus 111 --------------~~--~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-~~~ 169 (309)
T 3syl_A 111 --------------VG--Q-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-RDD 169 (309)
T ss_dssp --------------CC--S-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-TTT
T ss_pred --------------hh--h-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-CCC
Confidence 00 0 0111111222222222 3459999999733 1122333333333 456
Q ss_pred cEEEEecCChHH----------HhhccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 287 SKVVFTSRDFEV----------CGQMEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 287 s~IiiTTr~~~v----------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
..+|.||..... ... ....+.+.+++.++-.+++...+..
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 678888764322 222 1257899999999999999887643
No 25
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.58 E-value=2.1e-08 Score=87.05 Aligned_cols=144 Identities=9% Similarity=0.100 Sum_probs=84.7
Q ss_pred Cccccc---hHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 047607 154 TSVVGL---QSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEK 230 (352)
Q Consensus 154 ~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 230 (352)
.+|+|. +..++.+..++.....+.+.|+|++|+||||||+.+++... .....+.|++++..... +...
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~~ 98 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STAL 98 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHHH
Confidence 456763 35566666666655678899999999999999999999873 22334567766442110 0000
Q ss_pred cCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc----ccccccCCCCCCCCC-cEEEEecCCh---------
Q 047607 231 IGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD----LAQVGLPIPSPRSTS-SKVVFTSRDF--------- 296 (352)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~~g-s~IiiTTr~~--------- 296 (352)
+ +.+ .+..+|+|||++.... ...+...+......+ .++|+||+..
T Consensus 99 -------------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 99 -------------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp -------------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred -------------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 0 011 3457999999975421 122221111000112 2477777632
Q ss_pred HHHhhccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 297 EVCGQMEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 297 ~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
.+...+.....+.+.+++.++..+++.+.+.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 2222222236789999999999999998774
No 26
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=3.4e-07 Score=89.13 Aligned_cols=161 Identities=13% Similarity=0.083 Sum_probs=93.9
Q ss_pred CccccchHHHHHHHHHHhc-----------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC
Q 047607 154 TSVVGLQSTFERVWSCVME-----------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 216 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 216 (352)
.+++|++..+++|.+++.. ...+.+.|+|++|+||||+|+.+++.. . + .++.++++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 4689999999999999864 134789999999999999999999887 1 1 345566665
Q ss_pred ccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHH--HhCCCcEEEEEeCCCCccc-----ccccccCCCCCCCCCcEE
Q 047607 217 DLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFK--ILSDKKFMLLLDDIWEPVD-----LAQVGLPIPSPRSTSSKV 289 (352)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~--~L~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~~gs~I 289 (352)
......+ ...+....... +.......... ...+++.+|+||+++.... +..+...+.. .+..|
T Consensus 113 ~~~~~~~-~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~---~~~~i 182 (516)
T 1sxj_A 113 VRSKTLL-NAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK---TSTPL 182 (516)
T ss_dssp CCCHHHH-HHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH---CSSCE
T ss_pred cchHHHH-HHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh---cCCCE
Confidence 5443322 22222111100 00000000000 1235778999999976421 1222221111 23345
Q ss_pred EEecCChH---HHhhccCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 290 VFTSRDFE---VCGQMEAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 290 iiTTr~~~---v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
|+++.... +.........+.+.+++.++..+++...+....
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~ 226 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK 226 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 55554322 222222345789999999999999988775543
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.56 E-value=1.5e-06 Score=76.42 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=85.2
Q ss_pred CccccchHHHHHHHHHHh---c---------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVM---E---------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.++.++.|.+++. . ...+.+.|+|++|+|||+||+.+++.. ... .+.++++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHhh-
Confidence 468999988877766542 1 234568899999999999999999987 222 344444432110
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc-------------c----ccccccCCCC-CC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV-------------D----LAQVGLPIPS-PR 283 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-------------~----~~~l~~~~~~-~~ 283 (352)
............+.........+|+|||++... . +..+...+.. ..
T Consensus 79 ----------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 79 ----------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ----------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ----------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 011111222222333334567899999997641 0 1111111111 10
Q ss_pred CCCcEEEEecCChHHH-hh-cc---CCceeecCCCCHHHHHHHHHHhhc
Q 047607 284 STSSKVVFTSRDFEVC-GQ-ME---AHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 284 ~~gs~IiiTTr~~~v~-~~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
..+..+|.||...... .. .. ....+.+.+.+.++-.++|...+.
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLK 191 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHH
Confidence 2456677777654321 11 11 235678999999999999988764
No 28
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.54 E-value=1.6e-07 Score=85.51 Aligned_cols=144 Identities=11% Similarity=0.084 Sum_probs=84.8
Q ss_pred CccccchHHHHHHHHHHhc-----CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVME-----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
.+++|++..+..+..++.. .....+.|+|++|+|||+||+.+++.. ... .++++++.......+..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~--- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAA--- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHH---
Confidence 5689999999988887752 244678899999999999999999877 222 34555443322222111
Q ss_pred HHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--cccccccCCC---------CC--------CCCCcEE
Q 047607 229 EKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--DLAQVGLPIP---------SP--------RSTSSKV 289 (352)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~---------~~--------~~~gs~I 289 (352)
.+...+ .+..+|+|||++... ....+...+. .. ...+.++
T Consensus 83 --------------------~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 83 --------------------ILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp --------------------HHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred --------------------HHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 111101 245688888887642 1111110000 00 0123566
Q ss_pred EEecCChH-HHhhc-c-CCceeecCCCCHHHHHHHHHHhhc
Q 047607 290 VFTSRDFE-VCGQM-E-AHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 290 iiTTr~~~-v~~~~-~-~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
|.||.... +...+ . ....+.+.+++.++..+++.+.+.
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH
Confidence 66666432 11111 1 124789999999999999988764
No 29
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.52 E-value=1.2e-06 Score=79.20 Aligned_cols=166 Identities=12% Similarity=0.073 Sum_probs=94.8
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
.+++|.++.+++|.+++.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA---NFISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---EEEEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CC---CEEEEE------h
Confidence 4689999988888777642 245679999999999999999999987 22 223332 2
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc------------c----ccccccCCCC-CC
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV------------D----LAQVGLPIPS-PR 283 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~-~~ 283 (352)
..+.... ++. ... .....+.........+|+||+++... . ...+...+.. ..
T Consensus 83 ~~l~~~~---~g~-----~~~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGE-----SEA---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTT-----CTT---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCc-----hHH---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2222211 111 111 12222333334567999999997421 0 1111111110 11
Q ss_pred CCCcEEEEecCChHHH-h-hcc---CCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHh
Q 047607 284 STSSKVVFTSRDFEVC-G-QME---AHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQ 342 (352)
Q Consensus 284 ~~gs~IiiTTr~~~v~-~-~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~ 342 (352)
..+..||.||...... . ... ....+.+...+.++-.++|...+.......+..+..+++
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~ 215 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 215 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHH
Confidence 3456777788765321 1 111 235688999999999999987764433222334555554
No 30
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=4.4e-07 Score=83.68 Aligned_cols=168 Identities=10% Similarity=0.059 Sum_probs=87.8
Q ss_pred CccccchHHHHHHHHHH-hcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCC---CCCE--------------------E
Q 047607 154 TSVVGLQSTFERVWSCV-MEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPN---HFDF--------------------V 209 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~~--------------------~ 209 (352)
.+++|++..++.+.+++ ..+..+.+.|+|++|+||||+++.+......... .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 46899999999999988 6555444999999999999999999886411110 0110 0
Q ss_pred EEEEeCCcc-CHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--cccccccCCCCCCCCC
Q 047607 210 IWVVVSKDL-QLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTS 286 (352)
Q Consensus 210 ~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~g 286 (352)
+.+..+... .......+++..+..... ..... .+. -+..++-+++||++.... ....+...+... ..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~-~~~ 164 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY-SKN 164 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS-TTT
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh-cCC
Confidence 111111000 000011122222110000 00000 000 023366799999998742 122222222222 345
Q ss_pred cEEEEecCCh-HHHh-hccCCceeecCCCCHHHHHHHHHHhhcccc
Q 047607 287 SKVVFTSRDF-EVCG-QMEAHRSFKVECLAYEDAWELFEEKVGREI 330 (352)
Q Consensus 287 s~IiiTTr~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 330 (352)
+.+|++|... .+.. ..+....+++.+++.++..+++.+.+...+
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC
Confidence 7777777653 2211 112335789999999999999998775433
No 31
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.49 E-value=1.2e-07 Score=78.57 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=41.8
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++||+..++.+.+.+.......+.|+|++|+|||+||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987767778999999999999999999887
No 32
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=2.1e-07 Score=85.76 Aligned_cols=165 Identities=9% Similarity=0.101 Sum_probs=92.8
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccC-CCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVS-PNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|+++.++.+..++.....+.+.++|++|+||||+|+.+.+..... ...+ ....++++.......+. +.+..+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVR-EKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHT-THHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHH-HHHHHHh
Confidence 4689999999999999987755558999999999999999999875210 0111 23344444432332221 1111111
Q ss_pred -CCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEecCChH-HHhh-ccCCce
Q 047607 233 -LFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRDFE-VCGQ-MEAHRS 307 (352)
Q Consensus 233 -~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~~~-v~~~-~~~~~~ 307 (352)
.... ..... .....-..+.-+|++|+++... ....+...+... ....++|++|.... +... ......
T Consensus 115 ~~~~~--~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~-~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 115 RLTVS--KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETY-SGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HSCCC--CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred hhccc--ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc-CCCceEEEEeCchhhCcchhhccCce
Confidence 0000 00000 0001112355799999986542 222333222222 34567777775432 1111 111247
Q ss_pred eecCCCCHHHHHHHHHHhhcc
Q 047607 308 FKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 308 ~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+.+.+++.++....+.+.+..
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~ 207 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQ 207 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHT
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 899999999999999887643
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.47 E-value=4.8e-07 Score=83.90 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=37.3
Q ss_pred CccccchHHHHH---HHHHHhcCCc--EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFER---VWSCVMEDTI--GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~--~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|++..++. +.+.+..... +.+.|+|++|+|||+||+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999988766 4555555433 589999999999999999999988
No 34
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.47 E-value=4.3e-06 Score=76.27 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=87.8
Q ss_pred CccccchHHHHHHHHHHhc------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.++.++.|.+.+.. ...+.+.++|++|+|||+||+.+++... .. ..+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CC---cEEEEEhHHHHh--
Confidence 4689999988888776631 1346789999999999999999998761 11 233444432110
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc-------------ccccc---cCCCCCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD-------------LAQVG---LPIPSPRST 285 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-------------~~~l~---~~~~~~~~~ 285 (352)
.............+...-..++.+|+||+++.... ...+. ..+... ..
T Consensus 85 ---------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~ 148 (322)
T 1xwi_A 85 ---------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-ND 148 (322)
T ss_dssp ---------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC-CT
T ss_pred ---------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc-CC
Confidence 00111222222222222345788999999975410 01111 111111 34
Q ss_pred CcEEEEecCChH-----HHhhccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 286 SSKVVFTSRDFE-----VCGQMEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 286 gs~IiiTTr~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+..||.||.... +.. .....+.+...+.++-.++|...+..
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~ 194 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGT 194 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 556666675432 222 23457789999999999999887643
No 35
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.45 E-value=4.7e-07 Score=82.61 Aligned_cols=153 Identities=17% Similarity=0.199 Sum_probs=85.8
Q ss_pred Cccc-cch--HHHHHHHHHHhcC--CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 154 TSVV-GLQ--STFERVWSCVMED--TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 154 ~~~v-Gr~--~~~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
++|+ |.. .....+...+... ....+.|+|++|+||||||+.+++..... . ..+++++++ .+...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~-~~~~~i~~~------~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--G-YRVIYSSAD------DFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--T-CCEEEEEHH------HHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--C-CEEEEEEHH------HHHHHHH
Confidence 4455 533 2334455555443 34679999999999999999999987311 2 234555542 2333333
Q ss_pred HHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc---c-cccccCCCCCCCCCcEEEEecCCh--------
Q 047607 229 EKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD---L-AQVGLPIPSPRSTSSKVVFTSRDF-------- 296 (352)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~gs~IiiTTr~~-------- 296 (352)
..+... .. ..+...+. +..+|+|||++.... + ..+...+......+..||+||.+.
T Consensus 82 ~~~~~~-------~~----~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 82 EHLKKG-------TI----NEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHT-------CH----HHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHcC-------cH----HHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 333110 11 11222222 366999999976431 1 222222111002456788877632
Q ss_pred -HHHhhccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 297 -EVCGQMEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 297 -~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
.+...+.....+.+++ +.++..+++...+..
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence 2333333445789999 999999999988743
No 36
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=4.3e-06 Score=77.81 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=97.2
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
.++.|.++.+++|.+.+.- ..++-+.++|+||+|||.||+.+++.. ..+| +.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc-
Confidence 3478899888888766531 235678999999999999999999988 3333 3444332210
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc----------c------ccccc---cCCCC
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV----------D------LAQVG---LPIPS 281 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------~------~~~l~---~~~~~ 281 (352)
.+.......+...+...-...+++|.||+++... + ...+. ..+..
T Consensus 221 ----------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 221 ----------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp ----------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred ----------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 0011111112222222224578999999998531 0 11111 12222
Q ss_pred CCCCCcEEEEecCChHH-----HhhccCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 282 PRSTSSKVVFTSRDFEV-----CGQMEAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 282 ~~~~gs~IiiTTr~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
..+..||.||...+. .+.-..+..+.++..+.++-.++|+.+...-....+-++..+++.
T Consensus 285 --~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~ 349 (405)
T 4b4t_J 285 --SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEK 349 (405)
T ss_dssp --CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHH
T ss_pred --CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHH
Confidence 345567777775432 221134568899999999999999877644332334457777654
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.43 E-value=1.5e-06 Score=79.20 Aligned_cols=148 Identities=17% Similarity=0.175 Sum_probs=89.2
Q ss_pred CccccchHHHHHHHHHHhc------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.++.++.|.+.+.- ...+.+.++|++|+|||+||+.+++.. ... .+.++++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 4689999999999887721 124679999999999999999999987 332 2333331
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHH-HhCCCcEEEEEeCCCCccc-------------ccccc---cCCCCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFK-ILSDKKFMLLLDDIWEPVD-------------LAQVG---LPIPSPRS 284 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~-------------~~~l~---~~~~~~~~ 284 (352)
.+ ... ...........+.. .-..+..+|+||+++.... ...+. ..+... .
T Consensus 86 ~l----~~~--------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~ 152 (322)
T 3eie_A 86 DL----VSK--------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-S 152 (322)
T ss_dssp HH----HTT--------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-C
T ss_pred HH----hhc--------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-C
Confidence 11 110 01112222222222 2345678999999975311 11111 111122 3
Q ss_pred CCcEEEEecCChH-----HHhhccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 285 TSSKVVFTSRDFE-----VCGQMEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 285 ~gs~IiiTTr~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
.+..||.||.... +.. .....+.+...+.++-.++|...+..
T Consensus 153 ~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhcc
Confidence 4566776777532 222 23456788999999999999988754
No 38
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=9.7e-07 Score=79.86 Aligned_cols=147 Identities=11% Similarity=0.116 Sum_probs=91.0
Q ss_pred cchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCC-CCCCEEEEEEeCC-ccCHHHHHHHHHHHcCCCC
Q 047607 158 GLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSP-NHFDFVIWVVVSK-DLQLEKIQECVAEKIGLFN 235 (352)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 235 (352)
|.++.++.|.+.+..++.+.+.++|++|+||||+|+.+.+...... .+.+ ..+++.+. ...+..+ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 4566778888888877788999999999999999999987531112 2333 35555432 2233222 23444332211
Q ss_pred CCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCCh-HHHhhccCCceeecCC
Q 047607 236 ESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRDF-EVCGQMEAHRSFKVEC 312 (352)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~~-~v~~~~~~~~~~~l~~ 312 (352)
..+++-++|+|+++.. ...+.+...+..- ...+.+|++|.+. .+...+... .+++.+
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep-~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEP-PEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSC-CTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCC-CCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 1245679999999764 2334443333322 4556776666543 344444344 899999
Q ss_pred CCHHHHHHHHHHhh
Q 047607 313 LAYEDAWELFEEKV 326 (352)
Q Consensus 313 L~~~e~~~Lf~~~~ 326 (352)
++.++..+.+.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.40 E-value=2e-06 Score=76.36 Aligned_cols=149 Identities=18% Similarity=0.172 Sum_probs=82.2
Q ss_pred CccccchHHHHHHHH-------HHh---cCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHH
Q 047607 154 TSVVGLQSTFERVWS-------CVM---EDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKI 223 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 223 (352)
..++|....++++.. .+. ......+.|+|++|+|||+||+.+++.. ...| +.++++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~~----- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDKM----- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGGC-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHHh-----
Confidence 457888777766655 332 2356789999999999999999999986 2222 223332210
Q ss_pred HHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc-----------cc-ccccccCCC---CCCCCCcE
Q 047607 224 QECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP-----------VD-LAQVGLPIP---SPRSTSSK 288 (352)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----------~~-~~~l~~~~~---~~~~~gs~ 288 (352)
++. . ...........+......+..+|+|||++.. .. +..+...+. .. .....
T Consensus 102 -------~g~-~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~-~~~~~ 169 (272)
T 1d2n_A 102 -------IGF-S---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQ-GRKLL 169 (272)
T ss_dssp -------TTC-C---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCST-TCEEE
T ss_pred -------cCC-c---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCC-CCCEE
Confidence 000 0 0000111222333334567889999998642 01 111211111 11 23455
Q ss_pred EEEecCChHHHhh---ccC-CceeecCCCCH-HHHHHHHHHh
Q 047607 289 VVFTSRDFEVCGQ---MEA-HRSFKVECLAY-EDAWELFEEK 325 (352)
Q Consensus 289 IiiTTr~~~v~~~---~~~-~~~~~l~~L~~-~e~~~Lf~~~ 325 (352)
||.||........ .+. ...+.+++++. ++...++.+.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~ 211 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL 211 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc
Confidence 7778877654332 111 35678999988 6666666553
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.39 E-value=1.1e-06 Score=79.98 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=85.1
Q ss_pred CccccchHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.+++|+++.++.+.+++.... .+++.+.|++|+|||++|+.+.+.. . ...+.++.+.. ....+ ..++....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i-~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFV-RGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHH-HTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHH-HHHHHHHH
Confidence 568999999999999998764 4677888889999999999999877 1 23455554432 22221 11111110
Q ss_pred CCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc---cccccccCCCCCCCCCcEEEEecCChH-----HHhhccC
Q 047607 233 LFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV---DLAQVGLPIPSPRSTSSKVVFTSRDFE-----VCGQMEA 304 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~~gs~IiiTTr~~~-----v~~~~~~ 304 (352)
... ...+++.+|++||++... ....+...+... ..++++|+||.... +...
T Consensus 98 ~~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~-~~~~~iI~~~n~~~~l~~~l~sR--- 156 (324)
T 3u61_B 98 SAA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY-SSNCSIIITANNIDGIIKPLQSR--- 156 (324)
T ss_dssp HBC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH-GGGCEEEEEESSGGGSCTTHHHH---
T ss_pred hhc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC-CCCcEEEEEeCCccccCHHHHhh---
Confidence 000 012367899999998753 222232222221 24567888887543 2222
Q ss_pred CceeecCCCCHHHHHHH
Q 047607 305 HRSFKVECLAYEDAWEL 321 (352)
Q Consensus 305 ~~~~~l~~L~~~e~~~L 321 (352)
...+.+++++.++-.++
T Consensus 157 ~~~i~~~~~~~~e~~~i 173 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEM 173 (324)
T ss_dssp SEEEECCCCCHHHHHHH
T ss_pred CcEEEeCCCCHHHHHHH
Confidence 24789999998875433
No 41
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.34 E-value=3.2e-06 Score=81.41 Aligned_cols=165 Identities=11% Similarity=0.092 Sum_probs=97.5
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
..++|.+..+++|.+++.. ....-+.|+|++|+|||+||+.+.+.. .. ..+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~~---- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGPE---- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEchH----
Confidence 3589999999998877642 345678999999999999999998876 22 234444321
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc-------------cccccc---cCCCCCCC
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV-------------DLAQVG---LPIPSPRS 284 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~---~~~~~~~~ 284 (352)
+...+ ...........+.....++..+|+||+++... ....+. ..+.. .
T Consensus 274 ------l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~--~ 338 (489)
T 3hu3_A 274 ------IMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--R 338 (489)
T ss_dssp ------HHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT--T
T ss_pred ------hhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc--C
Confidence 11111 11112222333444445677899999994310 011111 11121 2
Q ss_pred CCcEEEEecCChHH-Hhhc----cCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 285 TSSKVVFTSRDFEV-CGQM----EAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 285 ~gs~IiiTTr~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
.+..||.||....- -..+ .....+.+...+.++-.++|...+..-....+..+..+++.
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~ 402 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHT
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Confidence 45566767765432 1111 22346889999999999999988754333334456666654
No 42
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.34 E-value=1.4e-06 Score=89.81 Aligned_cols=154 Identities=14% Similarity=0.227 Sum_probs=85.6
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccC--CCC--CCEEEEEEeCCccCHHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVS--PNH--FDFVIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~--f~~~~wv~~s~~~~~~~~~~~i~~ 229 (352)
..++||++++.++.+.|.....+.+.++|++|+|||+||+.+.+..... ... -..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 3589999999999999987666678899999999999999999876211 111 11344444322100
Q ss_pred HcCCCCCCCCCcCHHHHHHHHHHHh-C-CCcEEEEEeCCCCcc-------ccc---ccccCCCCCCCCCcEEEEecCChH
Q 047607 230 KIGLFNESWSSKNVQEKAQEIFKIL-S-DKKFMLLLDDIWEPV-------DLA---QVGLPIPSPRSTSSKVVFTSRDFE 297 (352)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~L-~-~kr~LlVlDdv~~~~-------~~~---~l~~~~~~~~~~gs~IiiTTr~~~ 297 (352)
+. . ...........+...+ . +++.+|++|+++... .++ .+...+. ..+..+|.+|....
T Consensus 240 --g~-~---~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~---~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 --GA-K---YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---RGELRLIGATTLDE 310 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH---TTCCCEEEEECHHH
T ss_pred --cC-c---cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh---CCCeEEEEecCchH
Confidence 00 0 1112233333333333 2 367899999997642 011 1222222 23445666665443
Q ss_pred HHh-----hc-cCCceeecCCCCHHHHHHHHHHhh
Q 047607 298 VCG-----QM-EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 298 v~~-----~~-~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
... .+ ..-..+.+++++.++..+++....
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 211 11 112358899999999999997543
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.32 E-value=1.2e-06 Score=81.02 Aligned_cols=149 Identities=17% Similarity=0.148 Sum_probs=86.8
Q ss_pred CccccchHHHHHHHHHHhc------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.+..++.|.+.+.. ...+-+.|+|++|+|||+||+.+++.. ... .+.++++
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 4689999999998887631 123568899999999999999999987 222 2333322
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc-------------cccccc---CCCCCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD-------------LAQVGL---PIPSPRST 285 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-------------~~~l~~---~~~~~~~~ 285 (352)
.+ .... ...........+...-..+..+|+||+++.... ...+.. .+... ..
T Consensus 119 ~l----~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~ 186 (355)
T 2qp9_X 119 DL----VSKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQ 186 (355)
T ss_dssp HH----HSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----C
T ss_pred HH----hhhh-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-CC
Confidence 11 1111 111112122222222345788999999975320 111111 11111 34
Q ss_pred CcEEEEecCChH-----HHhhccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 286 SSKVVFTSRDFE-----VCGQMEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 286 gs~IiiTTr~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
+..||.||.... +.. .....+.+...+.++-.++|...+..
T Consensus 187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~ 232 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGD 232 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhh
Confidence 566666776542 222 23456789999999999999887643
No 44
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.31 E-value=3.6e-06 Score=80.84 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=82.9
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCC--CCC-C-EEEEEEeCCccCHHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSP--NHF-D-FVIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~~s~~~~~~~~~~~i~~ 229 (352)
+.++||++++..+...|.......+.++|++|+|||+||+.++....... ... . ..+.++++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------c
Confidence 35899999999999999876666778999999999999999999862111 001 1 12223322 0
Q ss_pred HcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHh-------hc
Q 047607 230 KIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCG-------QM 302 (352)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~-------~~ 302 (352)
...+. ........ +...-..++.+|++| -..+....+...+.. ...++|.+|....... ..
T Consensus 247 ~~~g~----~e~~~~~~---~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~---g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 247 KYRGE----FEDRLKKV---MDEIRQAGNIILFID--AAIDASNILKPSLAR---GELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp ----------CTTHHHH---HHHHHTCCCCEEEEC--C--------CCCTTS---SSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred cccch----HHHHHHHH---HHHHHhcCCeEEEEe--CchhHHHHHHHhhcC---CCEEEEecCCHHHHHHHhhcCHHHH
Confidence 00000 11112222 222234567888999 122222223333332 2456666665443111 11
Q ss_pred cCCceeecCCCCHHHHHHHHHHhh
Q 047607 303 EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
..-..+.+.+++.++..+++...+
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHH
Confidence 122368999999999999998765
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.30 E-value=6.8e-06 Score=78.33 Aligned_cols=151 Identities=17% Similarity=0.098 Sum_probs=86.5
Q ss_pred CccccchHHHHHHHHHHhc------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++... . ...+.++++.-
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---~--~~~~~v~~~~l---- 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---N--STFFSISSSDL---- 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---S--SEEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---C--CCEEEEeHHHH----
Confidence 4689999999988887631 2346799999999999999999999761 1 12233333221
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc-------------ccccccCCCCC--CCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD-------------LAQVGLPIPSP--RSTS 286 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~--~~~g 286 (352)
....... .......+.. ..-..+..+|+||+++.... ...+...+... ...+
T Consensus 205 ------~~~~~g~----~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 205 ------VSKWLGE----SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred ------Hhhhcch----HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 1110000 1122222222 22235678999999985410 11122222110 0345
Q ss_pred cEEEEecCChHH-----HhhccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 287 SKVVFTSRDFEV-----CGQMEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 287 s~IiiTTr~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
..||.||..... .. .....+.+...+.++-..+|...+..
T Consensus 272 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~ 316 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGS 316 (444)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred EEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhc
Confidence 667777765432 22 23356788888888888999887643
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.30 E-value=4.6e-06 Score=76.38 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=84.4
Q ss_pred CccccchHHHHHHHHHHhc-----CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVME-----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
.+++|++..++.+..++.. .....+.|+|++|+|||+||+.+.+.. ...| +.++++.......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~------ 96 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGD------ 96 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhH------
Confidence 4689999999998888863 345678999999999999999998876 3332 3344322211111
Q ss_pred HHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--cccccccCCCCC-----------------CCCCcEE
Q 047607 229 EKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--DLAQVGLPIPSP-----------------RSTSSKV 289 (352)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~-----------------~~~gs~I 289 (352)
....+.. ..+..+|+||+++... ....+...+... ..++..+
T Consensus 97 -----------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 97 -----------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp -----------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred -----------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 1111111 2355688888887531 111111111000 0123566
Q ss_pred EEecCChH-----HHhhccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 290 VFTSRDFE-----VCGQMEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 290 iiTTr~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
|.+|.... +... ....+.+.+++.++...++.+.+.
T Consensus 158 i~atn~~~~l~~~L~~R--~~~~i~l~~~~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDR--FGMQFRLEFYKDSELALILQKAAL 198 (338)
T ss_dssp EEEESCGGGSCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EEeCCCccccCHHHHhh--cCEEeeCCCcCHHHHHHHHHHHHH
Confidence 66666532 2221 235789999999999999988764
No 47
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=1.7e-06 Score=79.45 Aligned_cols=147 Identities=15% Similarity=0.190 Sum_probs=86.7
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCC-EEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD-FVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
..++|.+..++.|...+..++.+.+.++|++|+||||+|+.+..... ...+. .+..++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~------------ 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGI------------ 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSH------------
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccH------------
Confidence 35789999999999888877655599999999999999999999862 11111 1222222221111
Q ss_pred CCCCCCCCcCHHHHHHHHHHH------hCCCcEEEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecCChH-HHhh-c
Q 047607 233 LFNESWSSKNVQEKAQEIFKI------LSDKKFMLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSRDFE-VCGQ-M 302 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~------L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr~~~-v~~~-~ 302 (352)
......+... +.+.+-++|+|+++.. ...+.+...+... ...+++|++|.... +... .
T Consensus 91 -----------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 91 -----------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY-TKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp -----------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGSCHHHH
T ss_pred -----------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-CCCeEEEEEecCccccchhHH
Confidence 1111112111 1234678999999653 2222232222221 34566777665432 2111 1
Q ss_pred cCCceeecCCCCHHHHHHHHHHhh
Q 047607 303 EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
+....+.+.+++.++..+.+.+.+
T Consensus 159 sR~~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 159 SQCTRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhceeEeccCCCHHHHHHHHHHHH
Confidence 223467899999999888887765
No 48
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=9e-06 Score=76.79 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=95.3
Q ss_pred ccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 155 SVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
++.|.++.+++|.+.+.- ..++-|.++|++|+|||+||+.+++.. ..+ .+.++.+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhc--
Confidence 478889888888765421 246788999999999999999999988 333 33444332110
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc----------------ccccc---cCCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD----------------LAQVG---LPIPSP 282 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----------------~~~l~---~~~~~~ 282 (352)
.+.......+...+...-...+++|++|+++.... ...+. ..+..
T Consensus 282 ---------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~- 345 (467)
T 4b4t_H 282 ---------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP- 345 (467)
T ss_dssp ---------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC-
T ss_pred ---------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC-
Confidence 00111112222222223345789999999985310 00111 11121
Q ss_pred CCCCcEEEEecCChHH-----HhhccCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 283 RSTSSKVVFTSRDFEV-----CGQMEAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 283 ~~~gs~IiiTTr~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
..+..||.||..... .+.-..+..+.+...+.++-.++|+.++..-....+-+++.|++.
T Consensus 346 -~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~ 410 (467)
T 4b4t_H 346 -RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRL 410 (467)
T ss_dssp -TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHH
T ss_pred -CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 345566777765432 211124567889998999999999877644332333456666653
No 49
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.27 E-value=5.9e-06 Score=76.43 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=85.6
Q ss_pred CccccchHHHHHHHHHHhc------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.++++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhcc-
Confidence 4689999999998887642 245689999999999999999999876 22 2345555432110
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHH-HhCCCcEEEEEeCCCCcc-------------cccccccCC---CCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFK-ILSDKKFMLLLDDIWEPV-------------DLAQVGLPI---PSPRS 284 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~-------------~~~~l~~~~---~~~~~ 284 (352)
.... .......+.. .-..++.+|+||+++... .+..+...+ .....
T Consensus 157 ----------------~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 157 ----------------WVGE-GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ----------------STTH-HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ----------------ccch-HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0011 1122222222 223567899999995320 011121111 11102
Q ss_pred CCcEEEEecCChH-HHhhc--cCCceeecCCCCHHHHHHHHHHhh
Q 047607 285 TSSKVVFTSRDFE-VCGQM--EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 285 ~gs~IiiTTr~~~-v~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
.+..||.||.... +...+ .....+.+...+.++..+++...+
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~ 264 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLM 264 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHH
Confidence 3455666776532 11111 223467888899999888888766
No 50
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=4.9e-06 Score=78.57 Aligned_cols=164 Identities=12% Similarity=0.101 Sum_probs=94.4
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
.++.|.++.+++|.+.+.- ..++-+.++|+||+|||+||+.+++.. ..+ .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 3478899888887766531 145789999999999999999999988 332 33444332110
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--------c--------ccccc---cCCCC
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--------D--------LAQVG---LPIPS 281 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~--------~~~l~---~~~~~ 281 (352)
.+.......+...+...-...+++|.+|+++... . +..+. ..+..
T Consensus 254 ----------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 ----------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp ----------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred ----------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 0011111112222222234578999999997521 0 11111 11222
Q ss_pred CCCCCcEEEEecCChHHHhh--cc---CCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHh
Q 047607 282 PRSTSSKVVFTSRDFEVCGQ--ME---AHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQ 342 (352)
Q Consensus 282 ~~~~gs~IiiTTr~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~ 342 (352)
..+..||.||...+.... +. -+..+.++..+.++-.++|+.+...-....+-++..+++
T Consensus 318 --~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~ 381 (437)
T 4b4t_L 318 --LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVK 381 (437)
T ss_dssp --TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHH
T ss_pred --CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence 345678888876543111 11 245678888888888888887764322223345666655
No 51
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.25 E-value=1.4e-05 Score=71.74 Aligned_cols=148 Identities=11% Similarity=0.076 Sum_probs=85.2
Q ss_pred CccccchHHHHHHHHHHhc------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.+..++.|.+++.. ...+.+.|+|++|+||||||+.+.+.. .. ..+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 4689999999998887632 235688999999999999999999877 22 233444433210
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHH-HHhCCCcEEEEEeCCCCcccc-------------cccc---cCCCCC-C
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIF-KILSDKKFMLLLDDIWEPVDL-------------AQVG---LPIPSP-R 283 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~~~~~-------------~~l~---~~~~~~-~ 283 (352)
. ...........+. .....++.+|+||+++....- ..+. ..++.. .
T Consensus 93 ------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------K----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------S----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------c----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 0111222222222 223456789999999653110 0011 111111 0
Q ss_pred CCCcEEEEecCChH-----HHhhccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 284 STSSKVVFTSRDFE-----VCGQMEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 284 ~~gs~IiiTTr~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
..+..||.||.... +... ....+.+...+.++-..++...+.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~ 203 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQ 203 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHG
T ss_pred CCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHH
Confidence 13456777777542 2222 235677888888888888877653
No 52
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.23 E-value=8.6e-07 Score=71.01 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 155 SVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++|+...+.++.+.+.. .....+.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999998887753 333457899999999999999999876
No 53
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.22 E-value=1.6e-05 Score=74.36 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=84.4
Q ss_pred CccccchHHHHHHHHHHhc------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.+..++.|.+++.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.++++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhcc-
Confidence 4689999999999887732 234689999999999999999998876 22 2344444332110
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--------c-----ccccccC---CCCCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--------D-----LAQVGLP---IPSPRST 285 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~-----~~~l~~~---~~~~~~~ 285 (352)
. ...........+...-.....+|+||+++... . ...+... +......
T Consensus 188 -~---------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 188 -Y---------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred -c---------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 01111111222222223456899999996430 0 0011111 1111023
Q ss_pred CcEEEEecCChH-----HHhhccCCceeecCCCCHHHHHHHHHHhhcc
Q 047607 286 SSKVVFTSRDFE-----VCGQMEAHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 286 gs~IiiTTr~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
...||.||.... +.. .....+.+...+.++-.+++...+..
T Consensus 252 ~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCK 297 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHh
Confidence 355666666432 222 12346789999999999999887643
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.22 E-value=1.9e-05 Score=80.48 Aligned_cols=154 Identities=15% Similarity=0.216 Sum_probs=91.6
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCC---CCCEEEE-EEeCCccCHHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPN---HFDFVIW-VVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~~~~w-v~~s~~~~~~~~~~~i~~ 229 (352)
..++||++++.++.+.|.......+.|+|++|+|||++|+.+.+......- .....+| ++++.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 358999999999999998776777899999999999999999987621111 1122222 111110
Q ss_pred HcCCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCcc--------c---ccccccCCCCCCCCCcEEEEecCChH
Q 047607 230 KIGLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEPV--------D---LAQVGLPIPSPRSTSSKVVFTSRDFE 297 (352)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~--------~---~~~l~~~~~~~~~~gs~IiiTTr~~~ 297 (352)
+.... .....+.....+.+.+ ..+..+|++||++... . ...+...+. ..+..+|.+|....
T Consensus 254 -~~~~~---~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~---~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 254 -LAGTK---YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTTYQE 326 (758)
T ss_dssp --CCCC---CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS---SCCCEEEEEECHHH
T ss_pred -hcccc---ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh---CCCeEEEEEeCchH
Confidence 00000 1223343444444444 3467899999997541 1 111223332 23566777776544
Q ss_pred HHhhcc-------CCceeecCCCCHHHHHHHHHHhh
Q 047607 298 VCGQME-------AHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 298 v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
...... .-..+.+.+.+.++..+++...+
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 321111 11357899999999988887654
No 55
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.22 E-value=1.1e-06 Score=77.73 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=82.2
Q ss_pred CccccchHHHHHHHHHHhc------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.+..++.+.+.+.. ...+-+.|+|++|+|||+||+.+++.. ...|- .++++.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~--- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFI--- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHH---
Confidence 5689999888877665531 123447899999999999999999987 22221 11221110
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc-----------------cccccccCCCCC--
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV-----------------DLAQVGLPIPSP-- 282 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~~-- 282 (352)
...... ........ +......+..+|+|||++... .+..+...+...
T Consensus 82 -------~~~~~~----~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 82 -------EMFVGL----GASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp -------TSCSSS----CSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred -------Hhhcch----HHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 001000 11111111 122222456899999996431 122232222211
Q ss_pred CCCCcEEEEecCChHHH--hhc---cCCceeecCCCCHHHHHHHHHHhhc
Q 047607 283 RSTSSKVVFTSRDFEVC--GQM---EAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 283 ~~~gs~IiiTTr~~~v~--~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
......||.||...... ... .....+.+.+.+.++-.+++...+.
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 01235677777654321 111 1234678899999999999987763
No 56
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=3.4e-06 Score=79.58 Aligned_cols=164 Identities=12% Similarity=0.124 Sum_probs=92.9
Q ss_pred CccccchHHHHHHHHHHh----c---------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVM----E---------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
.++.|.++.+++|.+.+. . ..++-|.++||||+|||+||+.+++.. ..+ .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhh-
Confidence 347899998888877643 1 246789999999999999999999988 332 33444332110
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHH-HhCCCcEEEEEeCCCCc-------cc---------ccccc---cCCC
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFK-ILSDKKFMLLLDDIWEP-------VD---------LAQVG---LPIP 280 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~-------~~---------~~~l~---~~~~ 280 (352)
.+... .+..+..+.. .-...+++|.+|+++.. .. ...+. ..+.
T Consensus 254 ----------------~~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 254 ----------------MYIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp ----------------SCSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred ----------------cccch-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 00111 1222222222 22346899999999631 00 11121 1222
Q ss_pred CCCCCCcEEEEecCChHHHh-h-c---cCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 281 SPRSTSSKVVFTSRDFEVCG-Q-M---EAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 281 ~~~~~gs~IiiTTr~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
. ..+..||.||...+... . + ..+..+.++..+.++-.++|+.+...-....+-++..+++.
T Consensus 317 ~--~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~ 382 (434)
T 4b4t_M 317 S--DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARS 382 (434)
T ss_dssp S--SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHH
T ss_pred C--CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHh
Confidence 1 24456666776544311 1 1 12457788888888888888766533222233456666654
No 57
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.20 E-value=1.1e-05 Score=73.87 Aligned_cols=158 Identities=11% Similarity=0.097 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHhcCC-cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC----
Q 047607 159 LQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGL---- 233 (352)
Q Consensus 159 r~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~---- 233 (352)
.++..+.+.+.+..++ .+.+.++|++|+|||++|+.+.+........ + +..+.. ......+...-..
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~-~---~~~c~~----c~~c~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQ-G---HKSCGH----CRGCQLMQAGTHPDYYT 78 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCB-T---TBCCSC----SHHHHHHHHTCCTTEEE
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCC-C---CCCCCC----CHHHHHHhcCCCCCEEE
Confidence 4566777888887765 4579999999999999999999887311110 0 000000 0001111111000
Q ss_pred -CCC-CCCCcCHHHHHHHHHHHh-----CCCcEEEEEeCCCCcc--cccccccCCCCCCCCCcEEEEecCChH-HHhhc-
Q 047607 234 -FNE-SWSSKNVQEKAQEIFKIL-----SDKKFMLLLDDIWEPV--DLAQVGLPIPSPRSTSSKVVFTSRDFE-VCGQM- 302 (352)
Q Consensus 234 -~~~-~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~IiiTTr~~~-v~~~~- 302 (352)
... .......++.. .+.+.+ .+++-++|+|+++... ..+.+...+... ..++.+|++|.+.. +...+
T Consensus 79 ~~~~~~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep-~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 79 LAPEKGKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP-PAETWFFLATREPERLLATLR 156 (334)
T ss_dssp ECCCTTCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-CTTEEEEEEESCGGGSCHHHH
T ss_pred EeccccCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC-CCCeEEEEEeCChHhCcHHHh
Confidence 000 00112222222 222322 2467899999997642 233333333332 44567777766543 22222
Q ss_pred cCCceeecCCCCHHHHHHHHHHhh
Q 047607 303 EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
+....+.+.+++.++..+.+.+..
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc
Confidence 334578999999999999888775
No 58
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.18 E-value=6.1e-07 Score=74.51 Aligned_cols=117 Identities=13% Similarity=0.088 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhc---CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC
Q 047607 160 QSTFERVWSCVME---DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE 236 (352)
Q Consensus 160 ~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 236 (352)
...++.+.+++.+ .....+.|+|++|+|||||++.+++... ....+ .++++ +..++...+........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~-~~~~~------~~~~~~~~~~~~~~~~~- 90 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGI-RGYFF------DTKDLIFRLKHLMDEGK- 90 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCC-CCCEE------EHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCC-eEEEE------EHHHHHHHHHHHhcCch-
Confidence 3444444444433 2357899999999999999999998872 11111 12333 34444444444432211
Q ss_pred CCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCC--ccccc--ccccCCCCCCCCCcEEEEecCCh
Q 047607 237 SWSSKNVQEKAQEIFKILSDKKFMLLLDDIWE--PVDLA--QVGLPIPSPRSTSSKVVFTSRDF 296 (352)
Q Consensus 237 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~--~l~~~~~~~~~~gs~IiiTTr~~ 296 (352)
.. .....+ . +.-+|||||++. ...|. .+...+......|..+|+||...
T Consensus 91 --~~----~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 --DT----KFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp --CS----HHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred --HH----HHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11 122222 1 456899999973 23332 11111111102567888888653
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.17 E-value=1.4e-05 Score=81.37 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=83.8
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCC---CE-EEEEEeCCccCHHHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF---DF-VIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~-~~wv~~s~~~~~~~~~~~i~~ 229 (352)
..++||+++++++...|......-+.++|++|+|||++|+.+.+........+ .. .+.+++
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 35899999999999999876666788999999999999999998862211111 11 121221
Q ss_pred HcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHHhhc-------
Q 047607 230 KIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVCGQM------- 302 (352)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~~~~------- 302 (352)
+............ ..+......++.+|++| ........+...+.. ...++|.||.........
T Consensus 245 --g~~~~G~~e~~l~---~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~~---~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 --GTKYRGEFEDRLK---KVMDEIRQAGNIILFID--AAIDASNILKPSLAR---GELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp ----------CTTHH---HHHHHHHTCCCCEEEEC--C--------CCCTTS---SSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred --cccccchHHHHHH---HHHHHHHhcCCEEEEEc--CchhHHHHHHHHHhc---CCEEEEeCCChHHHHHHhhccHHHH
Confidence 0000000111222 22333334677899999 222222223333332 346666666544311100
Q ss_pred cCCceeecCCCCHHHHHHHHHHhh
Q 047607 303 EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
..-..+.+.+++.++..+++....
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112468999999999999998654
No 60
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.16 E-value=8.4e-06 Score=73.57 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=45.5
Q ss_pred CccccchHHHHHHHHHHhcC---------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc
Q 047607 154 TSVVGLQSTFERVWSCVMED---------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD 217 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 217 (352)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+..... ..-...+.++++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTEY 86 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGGC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeecccc
Confidence 45789999999888877542 236899999999999999999999872 22223556666543
No 61
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.15 E-value=1.6e-05 Score=76.13 Aligned_cols=151 Identities=14% Similarity=0.123 Sum_probs=86.9
Q ss_pred CccccchHHHHHHHHHHh---cC---------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVM---ED---------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.++.++++.+.+. .. -.+-+.|+|++|+|||+||+.+.+.. ...| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 468999988777665542 21 13458899999999999999999987 3332 34444332110
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc----------------cccccccCCC--CCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV----------------DLAQVGLPIP--SPR 283 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~ 283 (352)
+ ...........+.......+.+|+||+++... .+..+...+. ..
T Consensus 89 ---------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~- 151 (476)
T 2ce7_A 89 ---------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS- 151 (476)
T ss_dssp ---------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG-
T ss_pred ---------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC-
Confidence 0 11111222233444445678999999996521 0112211111 11
Q ss_pred CCCcEEEEecCChHHHh--hcc---CCceeecCCCCHHHHHHHHHHhhcc
Q 047607 284 STSSKVVFTSRDFEVCG--QME---AHRSFKVECLAYEDAWELFEEKVGR 328 (352)
Q Consensus 284 ~~gs~IiiTTr~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (352)
..+..||.||...+... ... .+..+.+.+.+.++-.++|..++..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~ 201 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN 201 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh
Confidence 24567777887664321 111 2347788888888888888776643
No 62
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.14 E-value=2.9e-05 Score=68.16 Aligned_cols=149 Identities=15% Similarity=0.109 Sum_probs=83.0
Q ss_pred CccccchHHHHHHHHHH---hc---------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCV---ME---------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.+..++++.+.+ .. ...+-+.|+|++|+||||||+.+.+.. ...| +.++.+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 46899998887765543 21 123458899999999999999999887 2232 3443322110
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc----------------ccccccCCC--CCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD----------------LAQVGLPIP--SPR 283 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 283 (352)
. ............+.........++++|+++.... ...+...+. ..
T Consensus 84 --------~-------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~- 147 (257)
T 1lv7_A 84 --------M-------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG- 147 (257)
T ss_dssp --------S-------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-
T ss_pred --------H-------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc-
Confidence 0 0111222233334444455678999999843100 011111010 11
Q ss_pred CCCcEEEEecCChH-HHhhc-c---CCceeecCCCCHHHHHHHHHHhh
Q 047607 284 STSSKVVFTSRDFE-VCGQM-E---AHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 284 ~~gs~IiiTTr~~~-v~~~~-~---~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
..+..||.||.... +.... . .+..+.+...+.++-.+++...+
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 34556777776543 21111 1 23467788888888888887765
No 63
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.2e-05 Score=75.27 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=93.8
Q ss_pred ccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 155 SVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
++-|.++.+++|.+.+.- ...+-|.++|++|+|||.||+.+++.. ..+| +.++.+.-.+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGCC--
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhhh--
Confidence 467899888888766531 135789999999999999999999988 3332 3333322100
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHH-HhCCCcEEEEEeCCCCcc-------c---------ccccc---cCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFK-ILSDKKFMLLLDDIWEPV-------D---------LAQVG---LPIPS 281 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~-------~---------~~~l~---~~~~~ 281 (352)
.+... .+..+..+.. .-...+++|.+|+++... . +..+. ..+..
T Consensus 255 ---------------k~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 255 ---------------KYLGD-GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp ---------------SSSSH-HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred ---------------ccCch-HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 00111 1222222222 224578999999997421 0 01111 11121
Q ss_pred CCCCCcEEEEecCChHHHhh--cc---CCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 282 PRSTSSKVVFTSRDFEVCGQ--ME---AHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 282 ~~~~gs~IiiTTr~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
..+..||.||...+.... +. .+..+.+..-+.++-.++|..+...-....+-+++.+++.
T Consensus 319 --~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~ 383 (437)
T 4b4t_I 319 --RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTT 383 (437)
T ss_dssp --SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHH
T ss_pred --CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHh
Confidence 345567777776543211 11 2346788888888888898877644332334457777654
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.1e-05 Score=76.09 Aligned_cols=165 Identities=18% Similarity=0.139 Sum_probs=89.6
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
.++.|.++.+++|.+.+.- ..++-+.++|+||+|||+||+.+++.. ..+ .+.++.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc-
Confidence 3578999888888776531 245679999999999999999999988 332 33444332110
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--------c--c------ccccc---cCCCC
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP--------V--D------LAQVG---LPIPS 281 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--------~--~------~~~l~---~~~~~ 281 (352)
.+.......+...+...-...+++|.+|+++.. . + +..+. ..+..
T Consensus 245 ----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 ----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 001111122222222233457899999999631 0 0 11111 11222
Q ss_pred CCCCCcEEEEecCChHH-----HhhccCCceeecCCCCH-HHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 282 PRSTSSKVVFTSRDFEV-----CGQMEAHRSFKVECLAY-EDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 282 ~~~~gs~IiiTTr~~~v-----~~~~~~~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
..+..||.||...+. .+....+..+.+..++. ++-..+|..+...-....+-++..+++.
T Consensus 309 --~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~ 374 (428)
T 4b4t_K 309 --STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIR 374 (428)
T ss_dssp --SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHH
T ss_pred --CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHH
Confidence 345667778875432 21111234677866654 4445566555433222233456666654
No 65
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.07 E-value=1.7e-05 Score=71.38 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=38.9
Q ss_pred CccccchHHHHHHHHHHhc--------------CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVME--------------DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.++|+++.++.+...+.. .....+.++|++|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999998877754 235678899999999999999999887
No 66
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.04 E-value=1e-05 Score=68.22 Aligned_cols=121 Identities=25% Similarity=0.145 Sum_probs=64.6
Q ss_pred Cccccch----HHHHHHHHHHhcC----CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHH
Q 047607 154 TSVVGLQ----STFERVWSCVMED----TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQE 225 (352)
Q Consensus 154 ~~~vGr~----~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 225 (352)
.+|++.+ ..++.+.+++... ....+.|+|++|+|||+||+.+++... .....++|++++ .+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELFR 95 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHHH
Confidence 3455543 3444555555543 127899999999999999999999883 223345666543 3444
Q ss_pred HHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCC--cccccc--cccCCCCC-CCCCcEEEEecCC
Q 047607 226 CVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWE--PVDLAQ--VGLPIPSP-RSTSSKVVFTSRD 295 (352)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~--l~~~~~~~-~~~gs~IiiTTr~ 295 (352)
.+...... .........+.+ .-+|||||++. ...|.. +...+... ...+.++|+||..
T Consensus 96 ~~~~~~~~-------~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 96 ELKHSLQD-------QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHC----------CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhcc-------chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 44433211 112222333321 23999999965 333322 21111111 0235678888874
No 67
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.98 E-value=2.1e-05 Score=71.07 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=43.8
Q ss_pred CccccchHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc
Q 047607 154 TSVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD 217 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 217 (352)
+.++|+...+.++.+.+.. .....+.|+|.+|+|||++|+.+++....... ..+.++++.-
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~---~~v~v~~~~~ 64 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDR---PLVTLNCAAL 64 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSS---CCCEEECSSC
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCC---CeEEEeCCCC
Confidence 3589999999988887754 34456789999999999999999987621122 2345666543
No 68
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.98 E-value=3.1e-05 Score=78.37 Aligned_cols=164 Identities=10% Similarity=0.106 Sum_probs=94.9
Q ss_pred ccccchHHHHHHHHHHh----c---------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 155 SVVGLQSTFERVWSCVM----E---------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
++.|.++.+++|.+.+. . ..++-|.++|++|+|||+||+.+++.. ..+ .+.++++.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH-----
Confidence 46788888777766542 1 135779999999999999999999987 332 34444321
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--------c-----ccccc---cCCCCCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--------D-----LAQVG---LPIPSPRST 285 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~-----~~~l~---~~~~~~~~~ 285 (352)
+.... .......+...+.......+++|+||+++... + ...+. ..+.. ..
T Consensus 274 -----l~sk~-------~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~--~~ 339 (806)
T 3cf2_A 274 -----IMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RA 339 (806)
T ss_dssp -----HHSSC-------TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG--GG
T ss_pred -----hhccc-------chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc--cC
Confidence 11100 12222223333344445678999999997521 0 01111 11111 23
Q ss_pred CcEEEEecCChH-HHhhc----cCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhh
Q 047607 286 SSKVVFTSRDFE-VCGQM----EAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQA 343 (352)
Q Consensus 286 gs~IiiTTr~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~ 343 (352)
+..||-||...+ +-..+ ..++.+++...+.++-.++|..+...-....+-++..+++.
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~ 402 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHH
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHh
Confidence 445566665433 21111 23457889999999999999877654433344556666654
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.97 E-value=1.8e-05 Score=69.79 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=41.5
Q ss_pred CccccchHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc
Q 047607 154 TSVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD 217 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 217 (352)
..++|.+..+.++.+.+.. .....+.|+|++|+|||+||+.+++... ..-...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST---TTTSCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC---ccCCCeEEEecCCC
Confidence 4579999988888776643 2345678999999999999999998762 22223456676653
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.96 E-value=2.2e-06 Score=68.49 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=34.2
Q ss_pred CccccchHHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-.++|++..++++.+.+.. .....+.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578999988888887653 233457799999999999999998765
No 71
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.95 E-value=4.7e-06 Score=67.08 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeC
Q 047607 156 VVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 215 (352)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 215 (352)
++|.+... +..|..-....+.|+|++|+|||||++.++.... . ..+ ..++++..
T Consensus 20 ~~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~-~~~~~~~~ 73 (149)
T 2kjq_A 20 LGTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGK-NAAYIDAA 73 (149)
T ss_dssp CSCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTC-CEEEEETT
T ss_pred CcCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCC-cEEEEcHH
Confidence 34554333 3333332556899999999999999999999873 2 222 25666543
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.88 E-value=1.3e-05 Score=81.62 Aligned_cols=147 Identities=17% Similarity=0.167 Sum_probs=84.2
Q ss_pred CccccchHHHHHHHHHHhcC---------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVMED---------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQ 224 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 224 (352)
..++|.+..++.+...+... ....+.++|++|+|||+||+.+.+... ..-...+.++++......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechhccccc---
Confidence 45899999998888877531 224799999999999999999999872 222345666665432110
Q ss_pred HHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--cccccccCCCCC----------CCCCcEEEEe
Q 047607 225 ECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--DLAQVGLPIPSP----------RSTSSKVVFT 292 (352)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~----------~~~gs~IiiT 292 (352)
..........++ .....+|+||+++... .+..+...+..+ .....+||+|
T Consensus 565 ---------------~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 565 ---------------STSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ---------------CCC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ---------------ccccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 000011111111 1234589999997531 111111111100 1245688888
Q ss_pred cCC-----------------hHHHhhccCCceeecCCCCHHHHHHHHHHhh
Q 047607 293 SRD-----------------FEVCGQMEAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 293 Tr~-----------------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
|.. +.+...+ +..+.+.+|+.++..+++...+
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHHH
Confidence 873 1112222 3478999999999888887654
No 73
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.88 E-value=0.00024 Score=68.39 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=83.1
Q ss_pred CccccchHHHHHHHHHH---hcC---------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCV---MED---------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.++.+.++.+.. ... -.+-+.|+|++|+||||||+.+.... .. ..+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH--
Confidence 56899988777765543 221 12348999999999999999999877 22 234455432110
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCC----CcEEEEEeCCCCcc------------c----ccccccCCCC
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSD----KKFMLLLDDIWEPV------------D----LAQVGLPIPS 281 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~----kr~LlVlDdv~~~~------------~----~~~l~~~~~~ 281 (352)
.........++..++. ...++++|+++... . +..+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0011112233333432 34799999995421 0 1122111111
Q ss_pred C-CCCCcEEEEecCChHHHh--hc---cCCceeecCCCCHHHHHHHHHHhhc
Q 047607 282 P-RSTSSKVVFTSRDFEVCG--QM---EAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 282 ~-~~~gs~IiiTTr~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
. ...+..++.||...++.. .. ..+..+.+...+.++-.++|..++-
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 1 023455666676665421 11 1235778999999888888887653
No 74
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.84 E-value=0.00032 Score=62.23 Aligned_cols=151 Identities=15% Similarity=0.083 Sum_probs=79.7
Q ss_pred CccccchHHHHHHHHHHhc------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
++++|.++...++.+.... .-.+-+.|+|++|+|||||++.+.... . ...+.++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~---~~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---C---CCEEEecHH------
Confidence 5689988777766554321 011238999999999999999999877 2 223344321
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc------------c----ccccccCCCCCCC-
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV------------D----LAQVGLPIPSPRS- 284 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~~~~- 284 (352)
.+ .... ...........+...-.....++++|+++... . ...+...+..+..
T Consensus 108 ~~----~~~~-------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 DF----VEMF-------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp HH----HHST-------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred HH----HHHH-------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 11 1100 00001111122222223456899999995210 0 1112112222201
Q ss_pred CCcEEEEecCChHH-----HhhccCCceeecCCCCHHHHHHHHHHhhc
Q 047607 285 TSSKVVFTSRDFEV-----CGQMEAHRSFKVECLAYEDAWELFEEKVG 327 (352)
Q Consensus 285 ~gs~IiiTTr~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (352)
....++.||....+ ......+..+.+...+.++-.+++...+-
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 224 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence 22344556655433 11112345788999999988888887653
No 75
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.83 E-value=0.00049 Score=60.99 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=88.0
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
.++.|.++.+++|.+.+.. .-.+-+.++|++|+|||||++.+.... .. ..++++.+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh
Confidence 4577888887777665421 112239999999999999999999876 22 3455543221100
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCccc---------c----cccccCCCCC-CCC
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEPVD---------L----AQVGLPIPSP-RST 285 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~---------~----~~l~~~~~~~-~~~ 285 (352)
........+..+.+.. ....+++++|+++.... . ..+...+..+ ...
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000111122222221 34578999999975210 0 0111111111 023
Q ss_pred CcEEEEecCChHHHhh--c---cCCceeecCCCCHHHHHHHHHHhhccc---cccCCCCcHHHHh
Q 047607 286 SSKVVFTSRDFEVCGQ--M---EAHRSFKVECLAYEDAWELFEEKVGRE---ILLYIPLETNIHQ 342 (352)
Q Consensus 286 gs~IiiTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~---~~~~~~~l~~i~~ 342 (352)
..-++.+|....+... . .-+..+.+...+.++-.++|....... ....+-++..+++
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~ 210 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAG 210 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHH
Confidence 4456667766554211 1 235577899999999999998766321 1122334565554
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.83 E-value=0.0001 Score=66.12 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+..+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999988
No 77
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.80 E-value=0.00012 Score=71.46 Aligned_cols=155 Identities=16% Similarity=0.167 Sum_probs=80.0
Q ss_pred CccccchHHHHHHHHHHhc------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHH
Q 047607 154 TSVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECV 227 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 227 (352)
.+++|.++..+.+.+.+.- .....+.++|++|+||||||+.+.... ...| ..++++...+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~---~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL---GRKF---VRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH---TCEE---EEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc---CCCe---EEEEecccchhhhhhhHH
Confidence 3478888877777554421 245689999999999999999999887 2222 233333322211111111
Q ss_pred HHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc------ccccccCCCCC--------------CCCCc
Q 047607 228 AEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD------LAQVGLPIPSP--------------RSTSS 287 (352)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~------~~~l~~~~~~~--------------~~~gs 287 (352)
...++ .........+. ......-+++||+++.... ...+...+... .....
T Consensus 155 ~~~ig--------~~~~~~~~~~~-~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 155 RTYVG--------AMPGRIIQGMK-KAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp -----------------CHHHHHH-TTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred HHHhc--------cCchHHHHHHH-HhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 11111 00011111122 2222344888999976411 12222222111 01335
Q ss_pred EEEEecCCh-----HHHhhccCCceeecCCCCHHHHHHHHHHhh
Q 047607 288 KVVFTSRDF-----EVCGQMEAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 288 ~IiiTTr~~-----~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
.+|.||... .+..++ ..+.+.+++.++-.+++..++
T Consensus 226 ~iI~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred EEEeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 666666643 233333 468999999999999988765
No 78
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.77 E-value=6.8e-05 Score=76.65 Aligned_cols=163 Identities=12% Similarity=0.087 Sum_probs=89.6
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
.+++|.+..+++|.+++.. .....+.|+|++|+||||||+.+.... ...| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchH----
Confidence 3478999888888877642 234679999999999999999998876 3322 4444311
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc----------------ccccccCCCCCCC
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPVD----------------LAQVGLPIPSPRS 284 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~~ 284 (352)
+ . +. ........+...+.........++++|+++.... +..+...+.. .
T Consensus 274 --l----~---~~----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~--~ 338 (806)
T 1ypw_A 274 --I----M---SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--R 338 (806)
T ss_dssp --H----S---SS----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT--T
T ss_pred --h----h---hh----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc--c
Confidence 1 0 00 0111112222233333344678999999953210 1111111121 2
Q ss_pred CCcEEEEecCChH-HHhhc----cCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHH
Q 047607 285 TSSKVVFTSRDFE-VCGQM----EAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIH 341 (352)
Q Consensus 285 ~gs~IiiTTr~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~ 341 (352)
.+..+|.||.... +-..+ .....+.+...+.++-.+++...+..-.......+..++
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la 400 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA 400 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHH
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHH
Confidence 3455666665532 21111 123456888889999999998766433222233344443
No 79
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.77 E-value=0.00067 Score=59.14 Aligned_cols=149 Identities=16% Similarity=0.163 Sum_probs=78.7
Q ss_pred CccccchHHHHHHHHHHh---c---------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH
Q 047607 154 TSVVGLQSTFERVWSCVM---E---------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 221 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 221 (352)
.+++|.++...++.+... . .-.+-+.|+|++|+|||||++.++... .. ..+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~---~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CC---CEEEeeHH------
Confidence 467898877666554432 1 012238999999999999999999877 22 23333321
Q ss_pred HHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCcc------------c----ccccccCCCCCC-
Q 047607 222 KIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL-SDKKFMLLLDDIWEPV------------D----LAQVGLPIPSPR- 283 (352)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~~~- 283 (352)
. +.... ... .......+.+.. .....++++|+++... . ...+...+..+.
T Consensus 84 ~----~~~~~-------~~~-~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 D----FVEMF-------VGV-GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp H----HHHSC-------TTH-HHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred H----HHHHH-------hhH-HHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 1 11110 000 111222222222 2456899999995310 0 112211121110
Q ss_pred CCCcEEEEecCChHHHhh--c---cCCceeecCCCCHHHHHHHHHHhh
Q 047607 284 STSSKVVFTSRDFEVCGQ--M---EAHRSFKVECLAYEDAWELFEEKV 326 (352)
Q Consensus 284 ~~gs~IiiTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (352)
....-++.||....+... . ..+..+.+...+.++-.+++...+
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 123345556665544211 1 134567899999988888887765
No 80
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.55 E-value=0.00033 Score=59.43 Aligned_cols=89 Identities=21% Similarity=0.184 Sum_probs=55.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC----------CCCCCcCH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFN----------ESWSSKNV 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----------~~~~~~~~ 243 (352)
.-.++.|+|++|+|||||+..+.. . . -..++|++.....+...+.. +...++... ........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 346999999999999999999988 3 1 24688888776555555443 333332210 00011122
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCc
Q 047607 244 QEKAQEIFKILSDKKFMLLLDDIWEP 269 (352)
Q Consensus 244 ~~~~~~l~~~L~~kr~LlVlDdv~~~ 269 (352)
......++..+..+.-+||+|.+...
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 33455566666555779999998654
No 81
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.50 E-value=0.00017 Score=74.26 Aligned_cols=60 Identities=23% Similarity=0.344 Sum_probs=43.6
Q ss_pred ccccchHHHHHHHHHHhcC---------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc
Q 047607 155 SVVGLQSTFERVWSCVMED---------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD 217 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 217 (352)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+.+... ..-...+.++++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~---~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTEY 627 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH---SSGGGEEEECTTTC
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCCcEEEEechhc
Confidence 4799999888887776431 236899999999999999999999873 21223455665543
No 82
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.49 E-value=0.00015 Score=73.71 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=43.1
Q ss_pred CccccchHHHHHHHHHHhcC---------CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC
Q 047607 154 TSVVGLQSTFERVWSCVMED---------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 216 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 216 (352)
..++|.++.++.+...+... ....+.++|++|+|||++|+.+.+.. . ...+.++++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~---~~~~~i~~s~ 523 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---G---IELLRFDMSE 523 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---T---CEEEEEEGGG
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---c---CCEEEEechh
Confidence 45889999998887776521 23579999999999999999999887 2 2345566554
No 83
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.40 E-value=0.00054 Score=62.93 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=59.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES---WSSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (352)
.-.++.|+|++|+|||||+.++..... ..-..++|++....++.. .+..++..... ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 457999999999999999999998872 222357888877766654 45555543221 1234566666666
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 047607 251 FKILS-DKKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~-~kr~LlVlDdv~~ 268 (352)
...++ .+.-++|+|.+-.
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 66554 4556899999854
No 84
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.37 E-value=0.00032 Score=66.92 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=36.6
Q ss_pred CccccchHHHHHHHHH---HhcC--CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSC---VMED--TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~---L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|.++.++.+..+ +..+ ..+-+.++|++|+|||+||+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 5789999887765444 3333 23578899999999999999999988
No 85
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.00079 Score=58.00 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=57.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCC----CCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC----C---CCCcC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPN----HFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE----S---WSSKN 242 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 242 (352)
.-.++.|+|++|+|||||+..+..... ... .-..++|++....+....+. .++..++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQ-LPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTT-SCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHh-CchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 447999999999999999999998641 111 23578999887755554443 34455543210 0 01122
Q ss_pred HHH---HHHHHHHHhC-CCcEEEEEeCCCCc
Q 047607 243 VQE---KAQEIFKILS-DKKFMLLLDDIWEP 269 (352)
Q Consensus 243 ~~~---~~~~l~~~L~-~kr~LlVlDdv~~~ 269 (352)
..+ ....+.+.+. .+.-+||+|++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 222 2334555553 46779999998643
No 86
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.34 E-value=0.00018 Score=64.81 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=45.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEe--CCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV--SKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFK 252 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (352)
.+++.|+|++|+|||+||.++.... .. .+.|++. ... +.. ...+.+.....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhh-------------hhh-----hhcCHHHHHHHHHH
Confidence 4677899999999999999998762 11 2345555 222 100 11345666666666
Q ss_pred HhCCCcEEEEEeCCCCc
Q 047607 253 ILSDKKFMLLLDDIWEP 269 (352)
Q Consensus 253 ~L~~kr~LlVlDdv~~~ 269 (352)
.+...+ +||+|++...
T Consensus 179 ~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHCS-EEEEECCTTT
T ss_pred HHhhCC-EEEEeccccc
Confidence 665555 9999999653
No 87
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.27 E-value=0.00095 Score=61.30 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=57.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES---WSSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (352)
.-.++.|+|++|+|||||+.++..... ..-..++|++....++.. .+..++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457899999999999999999987762 222468899987766653 24555543211 1223456666666
Q ss_pred HHHhCC-CcEEEEEeCCCC
Q 047607 251 FKILSD-KKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~~-kr~LlVlDdv~~ 268 (352)
....+. +.-+||+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 655543 456999999854
No 88
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.24 E-value=0.0019 Score=59.08 Aligned_cols=93 Identities=15% Similarity=0.240 Sum_probs=59.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCC----CCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC---------C-CC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPN----HFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE---------S-WS 239 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~-~~ 239 (352)
.-.++.|+|++|+|||||+..+..... ... .-..++|++....++...+. .++..++.... . ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~-~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQ-LPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTT-SCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh-cccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 457999999999999999999988751 111 23478999988877776654 34455543211 0 01
Q ss_pred CcCHHHHHHHHHHHhC---CCcEEEEEeCCCC
Q 047607 240 SKNVQEKAQEIFKILS---DKKFMLLLDDIWE 268 (352)
Q Consensus 240 ~~~~~~~~~~l~~~L~---~kr~LlVlDdv~~ 268 (352)
.....++...+...+. .+--+||+|.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1122234444555553 4566999999854
No 89
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.23 E-value=0.0014 Score=59.55 Aligned_cols=93 Identities=18% Similarity=0.293 Sum_probs=59.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCC----CCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC-------CCCcC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPN----HFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES-------WSSKN 242 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 242 (352)
.-.++.|+|++|+|||||+.++..... ... .-..++|++....++...+. .++..++..... ....+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~-~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ-LPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT-SCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHh-cccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCC
Confidence 357999999999999999999988752 111 13478999988877776655 345555543210 01122
Q ss_pred HH---HHHHHHHHHhC--CCcEEEEEeCCCC
Q 047607 243 VQ---EKAQEIFKILS--DKKFMLLLDDIWE 268 (352)
Q Consensus 243 ~~---~~~~~l~~~L~--~kr~LlVlDdv~~ 268 (352)
.+ ++...+...++ .+.-+||+|.+..
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 22 34455555553 4567999999854
No 90
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.20 E-value=0.0014 Score=60.56 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=58.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNES---WSSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (352)
.-.++.|.|.+|+||||||.++..... ..-..++|++....++.. .+..++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~---~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH---HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 346889999999999999999988762 122368999988766654 24455543221 1234556666677
Q ss_pred HHHhCC-CcEEEEEeCCCC
Q 047607 251 FKILSD-KKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~~-kr~LlVlDdv~~ 268 (352)
...++. +--+||+|.+..
T Consensus 145 ~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHTTTCCSEEEEECTTT
T ss_pred HHHHhcCCCCEEEEeChHH
Confidence 666654 445999999854
No 91
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.15 E-value=0.00014 Score=62.43 Aligned_cols=111 Identities=12% Similarity=-0.038 Sum_probs=62.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
.-.++.++|++|+||||++..+.++.. ..... ++.+....... ....+++.++............+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~--~~g~k-Vli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE--YADVK-YLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCC-EEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH--hcCCE-EEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 357899999999999999999988873 22233 34444333211 1223445554332211223334455555555
Q ss_pred hCCCcE-EEEEeCCCCc--ccccccccCCCCCCCCCcEEEEecC
Q 047607 254 LSDKKF-MLLLDDIWEP--VDLAQVGLPIPSPRSTSSKVVFTSR 294 (352)
Q Consensus 254 L~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~IiiTTr 294 (352)
+.+.++ +|++|++... +..+.+ ..+. ..|..||+|-+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~---~~gi~Vil~Gl 124 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVA-NILA---ENGFVVIISGL 124 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHH-HHHH---HTTCEEEEECC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHH-HHHH---hCCCeEEEEec
Confidence 555555 9999998542 222222 1111 23677888887
No 92
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.14 E-value=0.0016 Score=58.56 Aligned_cols=89 Identities=9% Similarity=0.129 Sum_probs=58.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCcCHHHH-HHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW---SSKNVQEK-AQEI 250 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l 250 (352)
..++-|.|++|+|||||+.++...... ...-..++|++....++.. .+++++...+.. ...+.++. ...+
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 347899999999999999999887731 1113478999988877764 367776543311 23345555 4433
Q ss_pred HHH--h-CCCcEEEEEeCCCCc
Q 047607 251 FKI--L-SDKKFMLLLDDIWEP 269 (352)
Q Consensus 251 ~~~--L-~~kr~LlVlDdv~~~ 269 (352)
... + .++.-|||+|-+...
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHHhhccCceEEEEeccccc
Confidence 333 3 346789999998654
No 93
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.13 E-value=0.00031 Score=63.45 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcC---CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 161 STFERVWSCVMED---TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 161 ~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++.+.+++... ....+.|+|++|+|||+||..+++..
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3444555566542 24688899999999999999999987
No 94
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.07 E-value=0.00034 Score=63.86 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=37.1
Q ss_pred CccccchHHHHHHHHHHhc-----CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVME-----DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|.+..++.+...+.. .....+.++|++|+||||||+.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4578988877777666643 234679999999999999999999987
No 95
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.98 E-value=0.0025 Score=57.70 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=59.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCC---------CCC----CEEEEEEeCCccCHHHHHHHHHHHcCCCCC----
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSP---------NHF----DFVIWVVVSKDLQLEKIQECVAEKIGLFNE---- 236 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---- 236 (352)
.-.++.|+|.+|+|||+||.++........ ..- ..++|++....++...+. .++..++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhc
Confidence 457999999999999999999987641000 111 578999988877777665 34555544321
Q ss_pred ---CCCCcCHH---HHHHHHHHHhC--CCcEEEEEeCCCC
Q 047607 237 ---SWSSKNVQ---EKAQEIFKILS--DKKFMLLLDDIWE 268 (352)
Q Consensus 237 ---~~~~~~~~---~~~~~l~~~L~--~kr~LlVlDdv~~ 268 (352)
.....+.+ +....+...++ .+.-+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 00112223 34455556554 3556999999853
No 96
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.94 E-value=0.0052 Score=52.21 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=37.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVS---PNHFDFVIWVVVSKDLQLEKIQECVAEKIG 232 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (352)
.-.+++|+|++|+|||||++.+....... .......+|+.......... ...+...++
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 45799999999999999999998754110 01234688888665444333 234444443
No 97
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.92 E-value=0.0012 Score=55.52 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHHhc---CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 158 GLQSTFERVWSCVME---DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 158 Gr~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|++.++.|.+.+.. ....+++|.|++|+|||||++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355667777777754 356899999999999999999998866
No 98
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.91 E-value=0.0029 Score=64.12 Aligned_cols=164 Identities=12% Similarity=0.081 Sum_probs=78.8
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
.++.|.++..++|.+.+.- ...+-+.++|++|+|||.||+.+.+.. ...| +.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f-----~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANF-----ISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCEE-----EECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCce-----EEec----c
Confidence 4567888888887666531 124567899999999999999999988 2222 2222 2
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--------c--------ccccc---cCCCC
Q 047607 221 EKIQECVAEKIGLFNESWSSKNVQEKAQEIFKILSDKKFMLLLDDIWEPV--------D--------LAQVG---LPIPS 281 (352)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~--------~~~l~---~~~~~ 281 (352)
.+ ++... ...+...+...+...-+..+++|+||+++... + ..++. ..+..
T Consensus 545 ~~----l~s~~-------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 PE----LLTMW-------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HH----HHTTT-------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred ch----hhccc-------cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 22 22111 22233333333333335678999999997421 0 11111 11221
Q ss_pred CCCCCcEEEEecCChH-----HHhhccCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHh
Q 047607 282 PRSTSSKVVFTSRDFE-----VCGQMEAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQ 342 (352)
Q Consensus 282 ~~~~gs~IiiTTr~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~ 342 (352)
..+.-||-||.... +.+.-.-++.+.+..-+.++-.++|+.+........+-++..+++
T Consensus 614 --~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~ 677 (806)
T 3cf2_A 614 --KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 677 (806)
T ss_dssp --SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC--------
T ss_pred --CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 23334444665432 222112356777777677777777766653322222233444444
No 99
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.90 E-value=0.0026 Score=58.49 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=55.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW---SSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (352)
.-.++.|.|.+|+||||||.++..... ..-..++|++....++... +..++...+.. ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~---~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 457899999999999999999988762 1223688999877766432 44554432111 123445555555
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 047607 251 FKILS-DKKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~-~kr~LlVlDdv~~ 268 (352)
....+ .+--+||+|.+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 44442 3455999999743
No 100
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.86 E-value=0.003 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|.|.|+||+||||.|+.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887
No 101
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.84 E-value=0.00093 Score=60.68 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=38.4
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.++|+++.++.+...+..+ ..+.++|++|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999999988888764 468899999999999999999876
No 102
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.83 E-value=0.0011 Score=55.91 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhc--CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 161 STFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 161 ~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.+++|.+.+.. ....+++|+|++|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566666543 356799999999999999999998877
No 103
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.82 E-value=0.00077 Score=56.25 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=63.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC---ccCHHHHHHHHHHHc---CCCCCCCCCc------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK---DLQLEKIQECVAEKI---GLFNESWSSK------ 241 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l---~~~~~~~~~~------ 241 (352)
+...|.|++..|.||||+|--..-+.. ...+ .+.++..-+ ......++..+.-.+ +. .-.+...
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~--g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~-gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV--GHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMAT-GFTWETQNREADT 102 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH--HTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCT-TCCCCGGGHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEccc-ccccCCCCcHHHH
Confidence 346777888888999999999888772 2223 344443322 223333333331000 00 0001111
Q ss_pred -CHHHHHHHHHHHhCCCcE-EEEEeCCCC-----cccccccccCCCCCCCCCcEEEEecCCh
Q 047607 242 -NVQEKAQEIFKILSDKKF-MLLLDDIWE-----PVDLAQVGLPIPSPRSTSSKVVFTSRDF 296 (352)
Q Consensus 242 -~~~~~~~~l~~~L~~kr~-LlVlDdv~~-----~~~~~~l~~~~~~~~~~gs~IiiTTr~~ 296 (352)
........+++.+.+.+| |||||++-. ....+++...+... .....||+|+|+.
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCC
Confidence 112334556667766666 999999832 22223333333333 4567899999974
No 104
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.79 E-value=0.0033 Score=53.45 Aligned_cols=117 Identities=16% Similarity=0.110 Sum_probs=61.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---------------
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW--------------- 238 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--------------- 238 (352)
.-.++.|+|++|+|||||++.+..... ..-..+.|+.... ....+...+. .++......
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEecccccc
Confidence 346899999999999999999997652 1112466666543 3444443332 333211100
Q ss_pred ------CCcCHHHHHHHHHHHhCC-C--cEEEEEeCCCCcc-----cccccccCCCCC-CCCCcEEEEecCCh
Q 047607 239 ------SSKNVQEKAQEIFKILSD-K--KFMLLLDDIWEPV-----DLAQVGLPIPSP-RSTSSKVVFTSRDF 296 (352)
Q Consensus 239 ------~~~~~~~~~~~l~~~L~~-k--r~LlVlDdv~~~~-----~~~~l~~~~~~~-~~~gs~IiiTTr~~ 296 (352)
...+..+....+...+.. + ..+||+|...... ....+...+... ...|..||++|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 111445555555544421 3 3499999986321 111111111110 03578889988875
No 105
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.73 E-value=7.4e-05 Score=76.36 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=36.9
Q ss_pred CccccchHHHHHHHHHHhc-------------CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+++|.++..+.|.+.+.- .....+.++|++|+||||||+.+....
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 4578888888888776642 134568899999999999999999987
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.72 E-value=0.0063 Score=55.78 Aligned_cols=94 Identities=22% Similarity=0.302 Sum_probs=56.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCC----CEEEEEEeCCccCHHHHHHHHHHHcCCCCC----------CCC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF----DFVIWVVVSKDLQLEKIQECVAEKIGLFNE----------SWS 239 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~ 239 (352)
.-.++.|+|++|+|||||+..+..... ..... ..++|++....+....+ ..++...+.... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~-~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQ-LPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT-SCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc-cchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 458999999999999999999988761 11111 24589987665444433 334544432210 001
Q ss_pred CcCHHHHHHHHHHHhC------CCcEEEEEeCCCCc
Q 047607 240 SKNVQEKAQEIFKILS------DKKFMLLLDDIWEP 269 (352)
Q Consensus 240 ~~~~~~~~~~l~~~L~------~kr~LlVlDdv~~~ 269 (352)
.....+....+...+. .+.-+||+|.+-..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1112334445555553 46779999998654
No 107
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.69 E-value=0.0016 Score=60.07 Aligned_cols=45 Identities=22% Similarity=0.191 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHHh-------------c--CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 155 SVVGLQSTFERVWSCVM-------------E--DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++|.+..++.+...+. . .....+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899999998887773 1 134678999999999999999999887
No 108
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.69 E-value=0.00088 Score=61.13 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=35.1
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+++|.+..+..+...+......-+.|+|++|+|||+||+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4589998866665444443333458999999999999999999876
No 109
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.68 E-value=0.00093 Score=54.17 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|.|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 443
No 110
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.66 E-value=0.0085 Score=55.90 Aligned_cols=94 Identities=13% Similarity=0.202 Sum_probs=55.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC-------CCCCcCH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVS---PNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNE-------SWSSKNV 243 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~ 243 (352)
.-.++.|+|++|+|||||+..++-..... ...-..++|++....+....+. .++..++.... -....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 45799999999999999999876443110 1123568999887766655543 36666654321 0011222
Q ss_pred H---HHHHHHHHHh-CCCcEEEEEeCCCC
Q 047607 244 Q---EKAQEIFKIL-SDKKFMLLLDDIWE 268 (352)
Q Consensus 244 ~---~~~~~l~~~L-~~kr~LlVlDdv~~ 268 (352)
. .....+...+ ..+.-+||+|.+-.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 2 2333333333 34567999999743
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.64 E-value=0.001 Score=54.48 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999887
No 112
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.64 E-value=0.001 Score=53.91 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|.|.|++|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999886
No 113
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.62 E-value=0.0021 Score=59.52 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=36.7
Q ss_pred CccccchHHHHHHHHHHhc------------------------------CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVME------------------------------DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------------------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|.++.++.|...+.. .....+.++|++|+|||++|+.+.+..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999888888776621 124568899999999999999999877
No 114
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.60 E-value=0.00081 Score=62.00 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=34.5
Q ss_pred HHHHHhc-CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc
Q 047607 166 VWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL 218 (352)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 218 (352)
.++.+.. ..-..++|+|++|+|||||++.+.+........+. ++++-+.+..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 4455543 24568999999999999999999876531122333 4456676543
No 115
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.60 E-value=0.0015 Score=62.83 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=38.3
Q ss_pred CccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.++|+++.++.+...+..+ ..+.++|++|+|||+||+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 46899999999888877665 478899999999999999999876
No 116
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.59 E-value=0.011 Score=55.59 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.++|++|+||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 117
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.57 E-value=0.0014 Score=53.62 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 047607 176 GIVGLYGMGGVGKTTLLTQINN 197 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (352)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.56 E-value=0.0015 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|+|++|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34789999999999999999997753
No 119
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.56 E-value=0.017 Score=54.39 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...++.++|++|+||||++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998777
No 120
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.55 E-value=0.0017 Score=54.35 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=25.5
Q ss_pred hcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 171 MEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 171 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
......+|.|+|++|+|||||++.+....
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33567899999999999999999999887
No 121
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.54 E-value=0.0013 Score=55.12 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.|+|++|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999877
No 122
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.48 E-value=0.0018 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|.|.|++|+||||+++.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 123
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.48 E-value=0.0015 Score=53.79 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+.|.|+|++|+||||+++.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999877
No 124
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.47 E-value=0.0034 Score=57.30 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=32.3
Q ss_pred ccchHHHHHHHHHHh----cCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 157 VGLQSTFERVWSCVM----EDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 157 vGr~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|+.+...+++++.+. .++...|.|+|++|+||||+++.+....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 444555666666553 3456779999999999999999888765
No 125
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.46 E-value=0.002 Score=53.25 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 126
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.46 E-value=0.0013 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|+|+|++|+|||||++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 127
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.46 E-value=0.0022 Score=60.47 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=37.3
Q ss_pred CccccchHHHHHHHHHHhc--------------CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVME--------------DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|.++.++.|..++.. ...+-+.++|++|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999888888766632 134669999999999999999999887
No 128
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.45 E-value=0.0016 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+++|+|++|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998865
No 129
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.45 E-value=0.0036 Score=53.17 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 161 STFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+..+.+...+.......|.|+|.+|+|||||+..+....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334455555555678899999999999999999999876
No 130
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.40 E-value=0.014 Score=52.52 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=36.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 229 (352)
.-.++.|.|.+|+||||||.++..... .+. ..++|++... +...+...++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE~--s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLEM--GKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESSS--CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECCC--CHHHHHHHHHH
Confidence 447899999999999999999987762 222 5788888653 44555544443
No 131
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.38 E-value=0.002 Score=53.99 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....+++|+|++|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998876
No 132
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.37 E-value=0.02 Score=52.11 Aligned_cols=136 Identities=7% Similarity=-0.101 Sum_probs=80.3
Q ss_pred HHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHH
Q 047607 166 VWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQE 245 (352)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 245 (352)
+.+.|...-.++..++|+.|.||++.+..+..... ...|+....+.+....++ .+
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~-----------------------~~ 63 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDW-----------------------NA 63 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCH-----------------------HH
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCH-----------------------HH
Confidence 44445434567999999999999999999988762 123432222222222233 33
Q ss_pred HHHHHHH-HhCCCcEEEEEeCCCC-c--ccccccccCCCCCCCCCcEEEEecCC-------hHHHhhc-cCCceeecCCC
Q 047607 246 KAQEIFK-ILSDKKFMLLLDDIWE-P--VDLAQVGLPIPSPRSTSSKVVFTSRD-------FEVCGQM-EAHRSFKVECL 313 (352)
Q Consensus 246 ~~~~l~~-~L~~kr~LlVlDdv~~-~--~~~~~l~~~~~~~~~~gs~IiiTTr~-------~~v~~~~-~~~~~~~l~~L 313 (352)
+...+.. -+-+++-++|+|+++. . ..++.+...+..- ..++.+|++|.. ..+...+ .....++..++
T Consensus 64 l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p-~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 64 IFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLL-HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp HHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTC-BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred HHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcC-CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 3333222 1345677889999866 3 4445554444333 456777666542 2343333 33457889999
Q ss_pred CHHHHHHHHHHhhc
Q 047607 314 AYEDAWELFEEKVG 327 (352)
Q Consensus 314 ~~~e~~~Lf~~~~~ 327 (352)
+.++....+.+.+-
T Consensus 143 ~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 143 EQAQLPRWVAARAK 156 (343)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99888877777663
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.37 E-value=0.0041 Score=55.48 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=24.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....+|+|+|+.|+|||||++.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999998876
No 134
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.35 E-value=0.0041 Score=55.41 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 135
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.35 E-value=0.0037 Score=52.92 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=33.1
Q ss_pred cchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 158 GLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.++..+.+...+......+++|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555566666555678899999999999999999998876
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.34 E-value=0.022 Score=51.57 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=24.4
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+..+++|+|+.|+||||+++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998876
No 137
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.34 E-value=0.0024 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+++|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 138
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.33 E-value=0.016 Score=51.83 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++++|++|+||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998877
No 139
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.32 E-value=0.0022 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|.|.|++|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999877
No 140
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.31 E-value=0.0025 Score=52.66 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 141
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.30 E-value=0.0025 Score=52.55 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 142
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.30 E-value=0.1 Score=49.26 Aligned_cols=52 Identities=10% Similarity=-0.079 Sum_probs=36.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 229 (352)
.-.++.|.|.+|+||||||..+...... ..-..++|++... +...+...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECCC--CHHHHHHHHHH
Confidence 3468999999999999999999987731 1223577877653 45555555543
No 143
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.29 E-value=0.0019 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 144
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.28 E-value=0.0022 Score=53.59 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 145
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.28 E-value=0.002 Score=52.82 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|++|+||||+++.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 146
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.28 E-value=0.0026 Score=52.72 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+..+|.|.|++|+||||+++.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998876
No 147
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.28 E-value=0.0027 Score=54.03 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=24.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.++|.|.|+||+||||.|+.+...+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999887
No 148
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.27 E-value=0.087 Score=49.92 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=34.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECV 227 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 227 (352)
.-.++.|.|.+|+|||||+..+...... ..-..++|++... +...+...+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSS--CHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCC--CHHHHHHHH
Confidence 3469999999999999999999987721 1123577877544 334444443
No 149
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.27 E-value=0.0025 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++.|+|++|+||||||+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999876
No 150
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.26 E-value=0.0026 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
.+++|+|++|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999763
No 151
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.25 E-value=0.0025 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|+|.|++|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 152
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.24 E-value=0.0025 Score=55.22 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+..+++|+|++|+|||||++.+...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999776
No 153
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.23 E-value=0.0021 Score=53.99 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999998876
No 154
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.22 E-value=0.0026 Score=53.74 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|+|++|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998876
No 155
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.22 E-value=0.0042 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.|.|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998876
No 156
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.19 E-value=0.0029 Score=52.15 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++|+|+.|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 157
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.18 E-value=0.0022 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999765
No 158
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.18 E-value=0.0032 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|.+.|++|+||||+++.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 159
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.17 E-value=0.0028 Score=53.92 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|+|+|++|+||||+++.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998866
No 160
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.17 E-value=0.0034 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|++|+||||+++.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999987
No 161
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.17 E-value=0.003 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|+|.|++|+||||+++.+....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 162
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.17 E-value=0.028 Score=49.88 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=29.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 215 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 215 (352)
.-.+++|.|++|+|||||++.+...... . .-..+.|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~-~-~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT-A-MGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH-T-SCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH-H-cCCeEEEEeCc
Confidence 4469999999999999999999887721 1 11146666643
No 163
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.17 E-value=0.0037 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
.+..+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999774
No 164
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.17 E-value=0.0031 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999887
No 165
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.16 E-value=0.0028 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.|.|++|+||||+|+.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999887
No 166
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.16 E-value=0.041 Score=52.07 Aligned_cols=100 Identities=18% Similarity=0.276 Sum_probs=61.7
Q ss_pred HHHHHhc-CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCC------CC-
Q 047607 166 VWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAEKIGLF------NE- 236 (352)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~- 236 (352)
.++.|.. .+-.-++|+|.+|+|||+|+.++.+... ..+-+.++++-+.... ...++..++...-... ..
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 4555544 2456889999999999999999998762 3445677888777654 4566667776552221 00
Q ss_pred ---CCCCcCHH------HHHHHHHHHh---CCCcEEEEEeCCC
Q 047607 237 ---SWSSKNVQ------EKAQEIFKIL---SDKKFMLLLDDIW 267 (352)
Q Consensus 237 ---~~~~~~~~------~~~~~l~~~L---~~kr~LlVlDdv~ 267 (352)
.....+.. ...-.+-+++ +++.+||++||+-
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00112211 1122233333 4689999999985
No 167
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.15 E-value=0.0036 Score=52.69 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|.|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998876
No 168
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.14 E-value=0.003 Score=52.81 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+++|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998765
No 169
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.14 E-value=0.0035 Score=52.41 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|+|.|++|+||||+++.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998876
No 170
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.14 E-value=0.0032 Score=51.98 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
....|.|.|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999887
No 171
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.12 E-value=0.0023 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999876
No 172
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.12 E-value=0.0038 Score=51.44 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|++|+||||+++.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 173
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.12 E-value=0.0026 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.|.|+||+|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998876
No 174
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.07 E-value=0.0035 Score=52.45 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 047607 176 GIVGLYGMGGVGKTTLLTQINN 197 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (352)
.+|+|.|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 175
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.06 E-value=0.0025 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=18.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998876
No 176
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.06 E-value=0.003 Score=51.56 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQI 195 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v 195 (352)
...+++|+|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999953
No 177
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.04 E-value=0.02 Score=51.37 Aligned_cols=90 Identities=14% Similarity=0.181 Sum_probs=48.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHH--HHHHHHHHHcCCCCC-CCCCcCHHHH-HHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE--KIQECVAEKIGLFNE-SWSSKNVQEK-AQE 249 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~-~~~~~~~~~~-~~~ 249 (352)
...++.|+|++|+||||++..+..... ..-..+.++.... +... +-+...+...+...- .....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 457999999999999999999998773 1122344555432 2221 222334444443210 0012222222 233
Q ss_pred HHHHhCCCcEEEEEeCCC
Q 047607 250 IFKILSDKKFMLLLDDIW 267 (352)
Q Consensus 250 l~~~L~~kr~LlVlDdv~ 267 (352)
+...+..+.-++++|..-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444444444578888664
No 178
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.02 E-value=0.0029 Score=52.95 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 179
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.02 E-value=0.011 Score=55.88 Aligned_cols=91 Identities=16% Similarity=0.308 Sum_probs=51.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCC------CCCCCCcCHHH---
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAEKIGLF------NESWSSKNVQE--- 245 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~~--- 245 (352)
..++|+|.+|+|||||+..+..... ....+.++++.+.+.. ...++..++...-... ...........
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 4689999999999999999988762 1223455667666644 3445554454321000 00001111111
Q ss_pred -HHHHHHHHh---CCCcEEEEEeCCCC
Q 047607 246 -KAQEIFKIL---SDKKFMLLLDDIWE 268 (352)
Q Consensus 246 -~~~~l~~~L---~~kr~LlVlDdv~~ 268 (352)
..-.+.+++ ++++.||++||+..
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 111233333 57899999999953
No 180
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.00 E-value=0.003 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999876
No 181
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.00 E-value=0.0085 Score=51.83 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=24.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.....|.|.|++|+||||+|+.+...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998876
No 182
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.00 E-value=0.0043 Score=54.30 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 183
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.00 E-value=0.0039 Score=52.08 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 184
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.99 E-value=0.026 Score=53.58 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=62.9
Q ss_pred HHHHHhc-CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCC-------CC
Q 047607 166 VWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAEKIGLF-------NE 236 (352)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~ 236 (352)
.++.|.. .+-.-++|+|.+|+|||+|+.++.++.. ..+-+.++++-+.... ...++..++...-... ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 3455544 2446789999999999999999999862 3455778888887754 4566666666542221 00
Q ss_pred ----CCCCcCH------HHHHHHHHHHhC---CCcEEEEEeCCC
Q 047607 237 ----SWSSKNV------QEKAQEIFKILS---DKKFMLLLDDIW 267 (352)
Q Consensus 237 ----~~~~~~~------~~~~~~l~~~L~---~kr~LlVlDdv~ 267 (352)
.....+. ....-.+-++++ ++.+||++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0011111 122334455654 478999999984
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.98 E-value=0.0039 Score=52.32 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 047607 176 GIVGLYGMGGVGKTTLLTQINN 197 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (352)
.+|+|.|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 186
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.98 E-value=0.07 Score=48.43 Aligned_cols=50 Identities=16% Similarity=0.029 Sum_probs=35.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
.-.++.|.|.+|+||||||..+...... .-..+.|++..- +...+...++
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEm--s~~ql~~Rll 94 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEM--SAEQLALRAL 94 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSS--CHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCC--CHHHHHHHHH
Confidence 3468999999999999999999988732 334677777543 4455555543
No 187
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.97 E-value=0.0045 Score=51.97 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|+|+|++|+||||+++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998764
No 188
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.97 E-value=0.0045 Score=51.97 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=25.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCE
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDF 208 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~ 208 (352)
..+|+|.|++|+||||+++.+..... ...++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~--~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK--NNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcE
Confidence 46899999999999999999998763 234554
No 189
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.96 E-value=0.0042 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|+|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 190
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.96 E-value=0.016 Score=63.94 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=57.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW---SSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (352)
..+++.|+|++|+|||+||.++..... .+=..++|+++...++... +..++..-+.. ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 568999999999999999999988772 3334578888877766655 44554221111 223345555566
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 047607 251 FKILS-DKKFMLLLDDIW 267 (352)
Q Consensus 251 ~~~L~-~kr~LlVlDdv~ 267 (352)
....+ .+.-+||+|++.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 55543 466799999994
No 191
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.95 E-value=0.0043 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 192
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.94 E-value=0.0047 Score=51.94 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=23.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|++|+||||+++.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 193
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.92 E-value=0.0045 Score=51.79 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++++|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999775
No 194
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.92 E-value=0.025 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++.++|++|+||||++..+....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999887
No 195
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.92 E-value=0.0045 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|.|.|++|+||||+++.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998876
No 196
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.91 E-value=0.0041 Score=52.34 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||++.+....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34699999999999999999998765
No 197
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.89 E-value=0.0076 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|.|+.|+|||||++.+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999998776
No 198
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.88 E-value=0.013 Score=57.90 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=37.5
Q ss_pred ccccchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 155 SVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++|.+..++.+...+..+ ..+.|+|++|+||||||+.+....
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 4799998888887777655 588999999999999999999977
No 199
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.86 E-value=0.003 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.746 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|+|.|++|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 200
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.86 E-value=0.005 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|.|.|++|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999877
No 201
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.86 E-value=0.0049 Score=52.06 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 202
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.81 E-value=0.0051 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|+|.|+.|+||||+++.+...+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999665
No 203
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.80 E-value=0.067 Score=50.39 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|.++|.+|+||||++..+....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999877
No 204
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.79 E-value=0.0048 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999887
No 205
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.77 E-value=0.0054 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998776
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.77 E-value=0.0056 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|+|.|++|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998865
No 207
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.75 E-value=0.0061 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|+|+.|+|||||++.+..-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 45799999999999999999998876
No 208
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.75 E-value=0.0059 Score=50.57 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|+|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 209
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.73 E-value=0.0046 Score=52.64 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 210
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.72 E-value=0.0087 Score=50.43 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.1
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....+|.|.|++|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998876
No 211
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.72 E-value=0.0069 Score=52.66 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|+|.|++|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998865
No 212
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.71 E-value=0.0064 Score=49.00 Aligned_cols=26 Identities=35% Similarity=0.278 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45799999999999999999998865
No 213
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.69 E-value=0.0069 Score=50.49 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|+|.|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998874
No 214
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.67 E-value=0.011 Score=49.69 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcC-CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 162 TFERVWSCVMED-TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 162 ~~~~l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-+..+..++..- +.+.+.|+|++|+||||+|..+++..
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 355555555542 33579999999999999999999887
No 215
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.67 E-value=0.0071 Score=52.35 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998765
No 216
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.61 E-value=0.0085 Score=48.97 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998876
No 217
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.60 E-value=0.016 Score=55.10 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhc
Q 047607 160 QSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFL 200 (352)
Q Consensus 160 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (352)
.+.+..+...+...+ +.+.|.|.+|+||||++..+.....
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 334444444554433 4899999999999999999998873
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.60 E-value=0.046 Score=48.75 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+++++|.+|+||||++..+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998877
No 219
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.59 E-value=0.0086 Score=54.42 Aligned_cols=107 Identities=16% Similarity=0.094 Sum_probs=56.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKIL 254 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 254 (352)
-.+++|+|+.|+|||||++.+.... .. -...+.+.-........ .-+.++.- .. .-......+...|
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~---~~-~~g~i~i~~~~e~~~~~----~~~~i~~~----~g-gg~~~r~~la~aL 237 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI---PK-EERIISIEDTEEIVFKH----HKNYTQLF----FG-GNITSADCLKSCL 237 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS---CT-TSCEEEEESSCCCCCSS----CSSEEEEE----CB-TTBCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---cC-CCcEEEECCeecccccc----chhEEEEE----eC-CChhHHHHHHHHh
Confidence 3589999999999999999998876 22 23455554222111000 00000000 00 1112334455667
Q ss_pred CCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHH
Q 047607 255 SDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEV 298 (352)
Q Consensus 255 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v 298 (352)
..+.-+|++|+..+.+.++.+. .+..+ +.-+|+||...+.
T Consensus 238 ~~~p~ilildE~~~~e~~~~l~-~~~~g---~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 238 RMRPDRIILGELRSSEAYDFYN-VLCSG---HKGTLTTLHAGSS 277 (330)
T ss_dssp TSCCSEEEECCCCSTHHHHHHH-HHHTT---CCCEEEEEECSSH
T ss_pred hhCCCEEEEcCCChHHHHHHHH-HHhcC---CCEEEEEEcccHH
Confidence 7778889999998755444332 22211 2236666665443
No 220
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.58 E-value=0.0064 Score=52.36 Aligned_cols=24 Identities=38% Similarity=0.267 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINN 197 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~ 197 (352)
.-.+++|+|++|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999999984
No 221
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.57 E-value=0.0069 Score=51.63 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34799999999999999999998876
No 222
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.57 E-value=0.0078 Score=49.03 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=23.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++++|.|+.|+|||||+..+....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999999887
No 223
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.56 E-value=0.0079 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..|.|.|++|+||||+|+.+...+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999887
No 224
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.55 E-value=0.053 Score=51.72 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|+|+.|+|||||++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 225
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.54 E-value=0.0082 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 226
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.48 E-value=0.0083 Score=54.09 Aligned_cols=27 Identities=30% Similarity=0.672 Sum_probs=24.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
++.++|+|.|-||+||||.+..+..-+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 467999999999999999999998877
No 227
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.48 E-value=0.0093 Score=50.44 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINN 197 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~ 197 (352)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 228
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.47 E-value=0.0084 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 229
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.45 E-value=0.0071 Score=50.26 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+++|+|+.|+|||||++.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998876
No 230
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.42 E-value=0.009 Score=49.89 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+|+|.|++|+||||+++.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998876
No 231
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.41 E-value=0.0091 Score=51.35 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|++|+||||+++.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 232
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.40 E-value=0.007 Score=52.70 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|+|+|++|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999877
No 233
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.38 E-value=0.0062 Score=49.77 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+++|+|..|+|||||++.+...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998877
No 234
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.38 E-value=0.0055 Score=52.48 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=16.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHH-Hhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQIN-NKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~-~~~ 199 (352)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 543
No 235
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.37 E-value=0.0097 Score=51.01 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|.|.|++|+||||+|+.+...+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 236
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.35 E-value=0.01 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQIN 196 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~ 196 (352)
...+|+|.|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999998
No 237
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.34 E-value=0.0078 Score=51.45 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 238
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.34 E-value=0.0083 Score=51.70 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 239
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.34 E-value=0.12 Score=49.56 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+..+|+|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998766
No 240
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.33 E-value=0.0098 Score=53.36 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+..+++|+|++|+|||||++.+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999998776
No 241
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.31 E-value=0.0091 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
. .+++|+|+.|+|||||.+.+..-.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 5 799999999999999999998654
No 242
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.29 E-value=0.012 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|.|+.|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 243
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.29 E-value=0.0079 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999865
No 244
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.27 E-value=0.013 Score=50.25 Aligned_cols=40 Identities=28% Similarity=0.195 Sum_probs=29.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 216 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 216 (352)
.-.++.|.|++|+|||||+.++..... ..-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence 346899999999999999988877652 1223577877654
No 245
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.27 E-value=0.021 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....|.|.|++|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999988
No 246
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.26 E-value=0.0058 Score=60.16 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=33.3
Q ss_pred CccccchHHHHHHHHHHhcCCcE-----------EEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCVMEDTIG-----------IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.++|.+.....+.-.|.....+ .+.++|++|+|||+||+.+.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 44678777666555545443222 58899999999999999998765
No 247
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.25 E-value=0.025 Score=52.18 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=35.1
Q ss_pred HHHHHHhc-CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCc
Q 047607 165 RVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD 217 (352)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 217 (352)
+.++.+.. .+-.-++|+|.+|+|||+|+.++.+........+. ++++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 45666655 24567899999999999999999987621122333 355666554
No 248
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.25 E-value=0.011 Score=53.64 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=22.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|+|.|+.|+||||||..+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999876
No 249
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.20 E-value=0.013 Score=52.59 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|+|+.|+||||+++.+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998876
No 250
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.19 E-value=0.012 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|.|+|++|+||||||+.+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999876
No 251
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.18 E-value=0.026 Score=51.76 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=28.9
Q ss_pred HHHHHHHHh--cCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 163 FERVWSCVM--EDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 163 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+...+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 3467899999999999999999998776
No 252
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.15 E-value=0.045 Score=60.53 Aligned_cols=87 Identities=18% Similarity=0.154 Sum_probs=59.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW---SSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (352)
.-.++.|+|++|+||||||.++..... ..-..++|++.....+... +..++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 457999999999999999999998873 2234688998887766542 55565432211 234566666666
Q ss_pred HHHh-CCCcEEEEEeCCCC
Q 047607 251 FKIL-SDKKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L-~~kr~LlVlDdv~~ 268 (352)
.... ..+.-+||+|.+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 6544 34556999998853
No 253
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.15 E-value=0.021 Score=54.90 Aligned_cols=46 Identities=9% Similarity=-0.064 Sum_probs=35.3
Q ss_pred CccccchHHHHHHHHHH--hcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 154 TSVVGLQSTFERVWSCV--MEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 154 ~~~vGr~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+..+.|.+..+.+.+.. ...+..+|.+.|++|+||||+|+.+...+
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred CccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 34566666666666655 23356789999999999999999999998
No 254
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.14 E-value=0.065 Score=47.73 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+++++|.+|+||||++..++...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999877
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.14 E-value=0.013 Score=48.01 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+++|.|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999876
No 256
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.14 E-value=0.085 Score=49.84 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=30.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCC
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 216 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 216 (352)
.-.++.|.|.+|+||||||.+++.+.. .+ -..++|++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a-~~--g~~vl~fSlEm 235 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMS-DN--DDVVNLHSLEM 235 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHH-HT--TCEEEEECSSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHH-Hc--CCEEEEEECCC
Confidence 346899999999999999999998873 22 23677776543
No 257
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.12 E-value=0.013 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 258
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.10 E-value=0.0095 Score=52.24 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 259
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.09 E-value=0.0097 Score=51.35 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997765
No 260
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.08 E-value=0.012 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 261
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.07 E-value=0.013 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.|+|+.|+|||||+..+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34699999999999999999998876
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.06 E-value=0.011 Score=52.18 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999997654
No 263
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.06 E-value=0.015 Score=52.13 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|+.|+||||||..+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 264
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.05 E-value=0.014 Score=48.18 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.++|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998765
No 265
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.03 E-value=0.14 Score=49.20 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=36.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 228 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 228 (352)
.-.++.|.|.+|+||||||.++..... ..+-..++|++... +...+...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEeccC--CHHHHHHHHH
Confidence 346889999999999999999998872 12123578887654 3455555443
No 266
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.01 E-value=0.012 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999885
No 267
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.99 E-value=0.011 Score=51.17 Aligned_cols=26 Identities=42% Similarity=0.486 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 268
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.99 E-value=0.011 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999997654
No 269
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.98 E-value=0.043 Score=59.86 Aligned_cols=88 Identities=18% Similarity=0.147 Sum_probs=59.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW---SSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (352)
.-+++.|+|++|+||||||.++..... ..-..++|++.....+.. .+..++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 457999999999999999999988773 223468899888777654 255565433211 234456666666
Q ss_pred HHHh-CCCcEEEEEeCCCCc
Q 047607 251 FKIL-SDKKFMLLLDDIWEP 269 (352)
Q Consensus 251 ~~~L-~~kr~LlVlDdv~~~ 269 (352)
.... ..+.-+||+|.+...
T Consensus 454 ~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHhcCCCEEEECCHHHh
Confidence 5544 345569999998643
No 270
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.97 E-value=0.011 Score=55.53 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....+|.|+|++|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999998765
No 271
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.96 E-value=0.012 Score=51.63 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999998654
No 272
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.96 E-value=0.016 Score=48.28 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 162 TFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+.+.+.....+.--|+++|.+|+|||||...+.+..
T Consensus 17 ~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred chhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33444444444456678999999999999999998754
No 273
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.95 E-value=0.011 Score=51.84 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45799999999999999999997654
No 274
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.92 E-value=0.012 Score=50.56 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 275
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.91 E-value=0.012 Score=51.21 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 276
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.90 E-value=0.013 Score=50.78 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999997654
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.89 E-value=0.016 Score=50.75 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-.+++|+|+.|+|||||.+.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 455799999999999999999998765
No 278
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.89 E-value=0.0098 Score=50.46 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 279
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.87 E-value=0.027 Score=54.79 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=31.0
Q ss_pred cccchHHHHHHHHHH--hcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 156 VVGLQSTFERVWSCV--MEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 156 ~vGr~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+.+.+....+.... .-.+..++.|+|+.|+|||||++.+....
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 344444444444433 12245789999999999999999999887
No 280
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.87 E-value=0.041 Score=47.36 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=28.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEE
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV 213 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (352)
...|.|.|++|+||||+++.+..... ...+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeeec
Confidence 46899999999999999999999884 34555344443
No 281
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.87 E-value=0.052 Score=50.88 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=25.0
Q ss_pred hcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 171 MEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 171 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
......+++|+|+.|+|||||.+.+....
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34556799999999999999999998876
No 282
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.85 E-value=0.012 Score=51.33 Aligned_cols=26 Identities=42% Similarity=0.508 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999997654
No 283
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.83 E-value=0.015 Score=48.30 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...++|+|.+|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998764
No 284
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.83 E-value=0.018 Score=52.82 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|+|+.|+||||+++.+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999998876
No 285
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.82 E-value=0.045 Score=52.13 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=54.6
Q ss_pred HHHHHhc-CCcEEEEEEecCCCcHHHHH-HHHHHhhccCCCCCC-EEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----C
Q 047607 166 VWSCVME-DTIGIVGLYGMGGVGKTTLL-TQINNKFLVSPNHFD-FVIWVVVSKDL-QLEKIQECVAEKIGLFNE----S 237 (352)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~ 237 (352)
.++.+.. .+-.-++|+|.+|+|||+|| ..+.+.. ..+ .++++-+.+.. .+.++...+...-..... .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 3444543 23467899999999999996 4666654 245 35677776644 455666666542111000 0
Q ss_pred CCCcCH-HH-----HHHHHHHHh--CCCcEEEEEeCCC
Q 047607 238 WSSKNV-QE-----KAQEIFKIL--SDKKFMLLLDDIW 267 (352)
Q Consensus 238 ~~~~~~-~~-----~~~~l~~~L--~~kr~LlVlDdv~ 267 (352)
....+. .. ..-.+-+++ +++.+||++||+-
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 011111 11 122333444 5789999999984
No 286
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.79 E-value=0.013 Score=51.67 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 287
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.79 E-value=0.033 Score=45.49 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 164 ERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+.+ +...+..-|.|+|.+|+|||||...+....
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 44555 445567789999999999999999998543
No 288
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.79 E-value=0.013 Score=51.31 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999997654
No 289
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.79 E-value=0.019 Score=51.43 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.|.|+.|+||||||..+....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998876
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.79 E-value=0.016 Score=51.89 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45799999999999999999998654
No 291
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.78 E-value=0.017 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999765
No 292
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.76 E-value=0.018 Score=46.23 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|+|.+|+|||||...+....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998643
No 293
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.75 E-value=0.014 Score=50.83 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987654
No 294
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.75 E-value=0.045 Score=59.68 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=63.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCcCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW---SSKNVQEKAQEI 250 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (352)
.-++|-|+|+.|+||||||.++.... +..=..++|+......++.- +..++...+.. .+..-++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 34899999999999999999999776 34556789999888777754 77777654322 233446666666
Q ss_pred HHHhCC-CcEEEEEeCCCC
Q 047607 251 FKILSD-KKFMLLLDDIWE 268 (352)
Q Consensus 251 ~~~L~~-kr~LlVlDdv~~ 268 (352)
...++. .--+||+|-|..
T Consensus 1502 ~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHcCCCCEEEEccHHh
Confidence 666754 455999998853
No 295
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.74 E-value=0.048 Score=46.10 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=33.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 229 (352)
..|.+-|+.|+||||+++.+..... ...+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999999884 334433333333222234444555554
No 296
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.73 E-value=0.1 Score=49.57 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=54.9
Q ss_pred HHHHHhcC-CcEEEEEEecCCCcHHHHH-HHHHHhhccCCCCCC-EEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----C
Q 047607 166 VWSCVMED-TIGIVGLYGMGGVGKTTLL-TQINNKFLVSPNHFD-FVIWVVVSKDL-QLEKIQECVAEKIGLFNE----S 237 (352)
Q Consensus 166 l~~~L~~~-~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~ 237 (352)
.++.+..- +-.-++|+|.+|+|||+|| ..+.+.. . .+ .++++-+.+.. ...++...+...-..... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK---G--QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG---S--CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh---c--CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 34545432 3467899999999999995 4666654 2 44 35677776644 455666666543211100 0
Q ss_pred CCCcCH-HH-----HHHHHHHHh--CCCcEEEEEeCCC
Q 047607 238 WSSKNV-QE-----KAQEIFKIL--SDKKFMLLLDDIW 267 (352)
Q Consensus 238 ~~~~~~-~~-----~~~~l~~~L--~~kr~LlVlDdv~ 267 (352)
....+. .. ..-.+-+++ +++.+||++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 011211 11 112333444 5789999999984
No 297
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.73 E-value=0.014 Score=51.75 Aligned_cols=26 Identities=42% Similarity=0.469 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999997654
No 298
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.72 E-value=0.0099 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=20.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+..+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 299
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.71 E-value=0.014 Score=51.28 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999997654
No 300
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.70 E-value=0.033 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|+|++|+|||||++.+....
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45799999999999999999999765
No 301
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.70 E-value=0.047 Score=51.97 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=48.7
Q ss_pred cEEEEEEecCCCcHHHHH-HHHHHhhccCCCCCC-EEEEEEeCCcc-CHHHHHHHHHHHcCC--------CCCCCCC--c
Q 047607 175 IGIVGLYGMGGVGKTTLL-TQINNKFLVSPNHFD-FVIWVVVSKDL-QLEKIQECVAEKIGL--------FNESWSS--K 241 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~--------~~~~~~~--~ 241 (352)
-.-++|+|.+|+|||+|| ..+.+.. . .+ .++++-+.+.. ...++...+...-.. ..+.+.. .
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 456889999999999995 4666654 2 34 45777776643 344544444432100 0000000 1
Q ss_pred CH----HHHHHHHHHHhCCCcEEEEEeCCC
Q 047607 242 NV----QEKAQEIFKILSDKKFMLLLDDIW 267 (352)
Q Consensus 242 ~~----~~~~~~l~~~L~~kr~LlVlDdv~ 267 (352)
-. -..++.++. +++.+||++||+-
T Consensus 238 ~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 11 122333443 5899999999974
No 302
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.69 E-value=0.023 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|.|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999887
No 303
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.69 E-value=0.014 Score=50.83 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 304
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.67 E-value=0.02 Score=49.15 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|+|.|++|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998865
No 305
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.65 E-value=0.018 Score=50.71 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=30.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCC-------CCEEEEEEeCCc
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNH-------FDFVIWVVVSKD 217 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~s~~ 217 (352)
.-.++.|+|++|+|||||+..+.......... -..++|++....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 34799999999999999999998765211000 134667776554
No 306
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.62 E-value=0.019 Score=52.70 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+.--.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 307
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.62 E-value=0.022 Score=44.96 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-|.++|.+|+|||||...+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998764
No 308
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.60 E-value=0.02 Score=45.30 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998764
No 309
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.60 E-value=0.025 Score=45.84 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=26.2
Q ss_pred HHHHHHHhc-CCcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 164 ERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 164 ~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
.++.+.+.. ....-|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 334444444 55678999999999999999888743
No 310
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.60 E-value=0.04 Score=51.86 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=52.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCCCC-EEEEEEeCCc-cCHHHHHHHHHHHcCCCCC----CCCCcCH-HH---
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD-FVIWVVVSKD-LQLEKIQECVAEKIGLFNE----SWSSKNV-QE--- 245 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~-~~--- 245 (352)
.-++|.|.+|+|||+|+.++.+......++-+ .++++-+.+. ....++..++...-..... .....+. ..
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 45789999999999999999987621011222 5666666654 3455666665543101000 0011221 11
Q ss_pred --HHHHHHHHh---CCCcEEEEEeCCC
Q 047607 246 --KAQEIFKIL---SDKKFMLLLDDIW 267 (352)
Q Consensus 246 --~~~~l~~~L---~~kr~LlVlDdv~ 267 (352)
..-.+.+++ +++.+||++||+-
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 122344555 3689999999984
No 311
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.55 E-value=0.06 Score=45.49 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=26.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCE
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDF 208 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~ 208 (352)
...|.|-|+.|+||||+++.+..... ...+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCc
Confidence 36899999999999999999999883 344554
No 312
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.52 E-value=0.025 Score=49.03 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999776
No 313
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.52 E-value=0.018 Score=47.15 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 314
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.48 E-value=0.024 Score=46.26 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 315
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.45 E-value=0.035 Score=49.56 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=29.2
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeC
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 215 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 215 (352)
...++|+|+|-||+||||+|..+...... ... .+.-|.+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~--~G~-~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LGK-RVLQIGCD 78 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTC-CEEEEEES
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH--CCC-eEEEEeCC
Confidence 46789999999999999999999888732 122 35555544
No 316
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.45 E-value=0.021 Score=45.44 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998764
No 317
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.43 E-value=0.036 Score=51.84 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
...+++|+|+.|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 5679999999999999999999873
No 318
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.42 E-value=0.057 Score=45.01 Aligned_cols=87 Identities=16% Similarity=0.090 Sum_probs=45.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCcCHHHHHHHHHHH
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESW---SSKNVQEKAQEIFKI 253 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 253 (352)
.|+|=|..|+||||.++.+.+.+. ....+ +++..-.......+....++..-....... -..+..+....+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~--~~g~~-v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~ 78 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE--KRGKK-VILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH--HTTCC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCCc-EEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999883 22233 333333333334444444443321110000 001112233445555
Q ss_pred hCCCcEEEEEeCCC
Q 047607 254 LSDKKFMLLLDDIW 267 (352)
Q Consensus 254 L~~kr~LlVlDdv~ 267 (352)
|...+ .+|.|-..
T Consensus 79 L~~g~-~Vi~DRy~ 91 (197)
T 3hjn_A 79 LSEGY-AVLLDRYT 91 (197)
T ss_dssp HTTTC-EEEEESCH
T ss_pred HHCCC-eEEecccc
Confidence 65444 56778654
No 319
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.41 E-value=0.038 Score=51.99 Aligned_cols=101 Identities=11% Similarity=0.100 Sum_probs=56.1
Q ss_pred HHHHHhcC-CcEEEEEEecCCCcHHHHHHHHHHhhccCC--------CCCC-EEEEEEeCCc-cCHHHHHHHHHHHcCCC
Q 047607 166 VWSCVMED-TIGIVGLYGMGGVGKTTLLTQINNKFLVSP--------NHFD-FVIWVVVSKD-LQLEKIQECVAEKIGLF 234 (352)
Q Consensus 166 l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~~s~~-~~~~~~~~~i~~~l~~~ 234 (352)
.++.|..- +-.-++|.|.+|+|||+|+.++.+.. ... ++-+ .++++-+.+. ....++..++...-...
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~ 215 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS 215 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence 34444331 33567899999999999999998876 221 1223 5666666654 34555555554421000
Q ss_pred -----CCCCCCcCHHH-----HHHHHHHHh---CCCcEEEEEeCCC
Q 047607 235 -----NESWSSKNVQE-----KAQEIFKIL---SDKKFMLLLDDIW 267 (352)
Q Consensus 235 -----~~~~~~~~~~~-----~~~~l~~~L---~~kr~LlVlDdv~ 267 (352)
....+...... ..-.+.+++ +++.+||++||+-
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 00001122221 122344555 3689999999985
No 320
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.40 E-value=0.036 Score=50.80 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=61.5
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCC-CEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHH
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF-DFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIF 251 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (352)
....+++|+|+.|+|||||.+.+..... ... ..++.+.-.-.+..... ..++.+.. ...+.......|.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~~i~t~ed~~e~~~~~~-~~~v~q~~------~~~~~~~~~~~La 190 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYHHILTIEDPIEFVHESK-KCLVNQRE------VHRDTLGFSEALR 190 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCCEEEEEESSCCSCCCCS-SSEEEEEE------BTTTBSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCcEEEEccCcHHhhhhcc-ccceeeee------eccccCCHHHHHH
Confidence 4456999999999999999999987652 111 12222211100000000 00000000 0011122344677
Q ss_pred HHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChHHH
Q 047607 252 KILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFEVC 299 (352)
Q Consensus 252 ~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~v~ 299 (352)
..|...+=+|++|+..+.+.+..+... . ..|..||+||...+..
T Consensus 191 ~aL~~~PdvillDEp~d~e~~~~~~~~---~-~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 191 SALREDPDIILVGEMRDLETIRLALTA---A-ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHH---H-HTTCEEEEEESCSSHH
T ss_pred HHhhhCcCEEecCCCCCHHHHHHHHHH---H-hcCCEEEEEEccChHH
Confidence 788888889999999876555443222 1 3466788888876554
No 321
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.38 E-value=0.043 Score=48.00 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=28.1
Q ss_pred HHHHHHHhcC--CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 164 ERVWSCVMED--TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 164 ~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-+..+|... +...+.++|++|+|||.+|..+.+..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3456666543 35679999999999999999999864
No 322
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.38 E-value=0.018 Score=50.41 Aligned_cols=24 Identities=42% Similarity=0.419 Sum_probs=21.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
-.+++|+|+.|+|||||.+.+..-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999754
No 323
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.38 E-value=0.024 Score=47.33 Aligned_cols=26 Identities=23% Similarity=0.086 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-..|.|.|++|+||||||..+..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34778999999999999999998765
No 324
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.36 E-value=0.022 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||++.+..-+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45799999999999999999997654
No 325
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.35 E-value=0.027 Score=46.45 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.++.|+|++|+||||++..+..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999997777665
No 326
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.30 E-value=0.028 Score=50.71 Aligned_cols=26 Identities=38% Similarity=0.635 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|+|++|+||||++..+....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999998877
No 327
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.29 E-value=0.023 Score=52.03 Aligned_cols=26 Identities=42% Similarity=0.503 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+.--.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 328
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.26 E-value=0.02 Score=45.88 Aligned_cols=25 Identities=40% Similarity=0.410 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|+|+|.+|+|||||...+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999997654
No 329
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.26 E-value=0.024 Score=44.89 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-|.++|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999998764
No 330
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.24 E-value=0.026 Score=48.30 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..++|.|++|+||||+|+.+...+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998877
No 331
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.024 Score=46.48 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998765
No 332
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.24 E-value=0.024 Score=52.38 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+.--.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34689999999999999999998754
No 333
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.23 E-value=0.056 Score=46.01 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=24.9
Q ss_pred cCCcEEEEEEecCCCcHHHHHHHHHHhhc
Q 047607 172 EDTIGIVGLYGMGGVGKTTLLTQINNKFL 200 (352)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (352)
......|.+.|+.|+||||+++.+.....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34567899999999999999999999873
No 334
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.23 E-value=0.037 Score=45.06 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
....-|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 35577999999999999999998765
No 335
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.22 E-value=0.022 Score=50.69 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45699999999999999999997754
No 336
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.20 E-value=0.025 Score=51.97 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45799999999999999999998654
No 337
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.20 E-value=0.027 Score=45.96 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998764
No 338
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.20 E-value=0.026 Score=44.72 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
--|+++|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999988754
No 339
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.19 E-value=0.025 Score=51.92 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34689999999999999999998654
No 340
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.19 E-value=0.019 Score=49.13 Aligned_cols=25 Identities=32% Similarity=0.232 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999998765
No 341
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.18 E-value=0.031 Score=51.88 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|+.|+||||||..+....
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3689999999999999999999876
No 342
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.18 E-value=0.025 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998754
No 343
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.17 E-value=0.026 Score=44.82 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
--|+|+|.+|+|||||...+.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998754
No 344
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.16 E-value=0.026 Score=46.17 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
--|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 345
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.15 E-value=0.026 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998765
No 346
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.15 E-value=0.025 Score=51.89 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 347
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.15 E-value=0.026 Score=44.99 Aligned_cols=25 Identities=36% Similarity=0.312 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998764
No 348
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.15 E-value=0.029 Score=44.51 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|+++|.+|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998754
No 349
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.14 E-value=0.047 Score=45.20 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=21.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
.+..-|+++|.+|+|||||...+...
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34556899999999999999998753
No 350
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.13 E-value=0.027 Score=44.86 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
--|.++|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999998765
No 351
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.10 E-value=0.033 Score=53.79 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.++|++|+||||+|+.+....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 352
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.09 E-value=0.063 Score=52.17 Aligned_cols=45 Identities=16% Similarity=0.026 Sum_probs=33.5
Q ss_pred ccccchHHHHHHHHHH--hcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 155 SVVGLQSTFERVWSCV--MEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 155 ~~vGr~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+.|.+..+.+.+.. ......+|.+.|++|+||||+|+.+....
T Consensus 350 ~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 350 EWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 4455555555555555 23346789999999999999999998876
No 353
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.09 E-value=0.031 Score=45.56 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+.+|+|+.|+|||||+..++.-.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3488999999999999999998755
No 354
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.08 E-value=0.027 Score=51.98 Aligned_cols=26 Identities=35% Similarity=0.289 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34689999999999999999998654
No 355
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.08 E-value=0.029 Score=44.63 Aligned_cols=24 Identities=33% Similarity=0.384 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
--|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458999999999999999998654
No 356
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.05 E-value=0.027 Score=51.89 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44789999999999999999998654
No 357
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.04 E-value=0.028 Score=45.30 Aligned_cols=26 Identities=38% Similarity=0.432 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...-|.|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34678999999999999999988764
No 358
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.02 E-value=0.031 Score=45.04 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...-|+|+|.+|+|||||...+....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999998764
No 359
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.01 E-value=0.064 Score=51.10 Aligned_cols=102 Identities=12% Similarity=0.161 Sum_probs=56.5
Q ss_pred HHHHHhcC-CcEEEEEEecCCCcHHHH-HHHHHHhhcc---CCCCCC-EEEEEEeCCcc-CHHHHHHHHHHHcCCCCC--
Q 047607 166 VWSCVMED-TIGIVGLYGMGGVGKTTL-LTQINNKFLV---SPNHFD-FVIWVVVSKDL-QLEKIQECVAEKIGLFNE-- 236 (352)
Q Consensus 166 l~~~L~~~-~~~vi~I~G~~GiGKTtL-a~~v~~~~~~---~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-- 236 (352)
.++.+..- +-.-++|+|.+|+|||+| +..+.+.... ...+.+ .++++-+.+.. ...++...+...-.....
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 45555442 346789999999999999 4566666520 012344 46777777654 455666666542111000
Q ss_pred --CCCCcCH-HH-----HHHHHHHHh--CCCcEEEEEeCCC
Q 047607 237 --SWSSKNV-QE-----KAQEIFKIL--SDKKFMLLLDDIW 267 (352)
Q Consensus 237 --~~~~~~~-~~-----~~~~l~~~L--~~kr~LlVlDdv~ 267 (352)
.....+. .. ..-.+-+++ +++.+||++||+-
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 0011111 11 112333444 5789999999985
No 360
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.01 E-value=0.028 Score=44.80 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
--|.++|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998754
No 361
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.01 E-value=0.029 Score=45.11 Aligned_cols=25 Identities=36% Similarity=0.471 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|+|+|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998754
No 362
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.00 E-value=0.029 Score=44.57 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
-|.++|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988653
No 363
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.00 E-value=0.023 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34689999999999999999998654
No 364
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.98 E-value=0.031 Score=44.94 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 3458899999999999999998654
No 365
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.98 E-value=0.067 Score=48.83 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+..+++|+|++|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999998754
No 366
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.97 E-value=0.03 Score=45.87 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999998887754
No 367
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.97 E-value=0.028 Score=47.40 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998865
No 368
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.96 E-value=0.034 Score=44.71 Aligned_cols=26 Identities=35% Similarity=0.368 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+...|.|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999998754
No 369
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.95 E-value=0.033 Score=51.17 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...++|+|+.|+|||||++.+....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 370
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.93 E-value=0.087 Score=47.80 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=25.3
Q ss_pred HhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 170 VMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 170 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.+...+++.+.|.||+||||+|..+....
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l 40 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQL 40 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 344457888899999999999999998877
No 371
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.93 E-value=0.034 Score=45.61 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+...|+|+|.+|+|||||...+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999998653
No 372
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.93 E-value=0.031 Score=44.58 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 047607 176 GIVGLYGMGGVGKTTLLTQINN 197 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (352)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999864
No 373
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.91 E-value=0.036 Score=46.49 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....|.++|++|+|||||...+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998865
No 374
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.91 E-value=0.032 Score=45.69 Aligned_cols=25 Identities=40% Similarity=0.307 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468999999999999997776554
No 375
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.91 E-value=0.033 Score=45.83 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|+++|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 376
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.89 E-value=0.057 Score=52.75 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.|.|++|+||||+|+.+....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999886
No 377
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.88 E-value=0.032 Score=44.33 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
--|.++|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998754
No 378
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.87 E-value=0.032 Score=50.28 Aligned_cols=26 Identities=46% Similarity=0.553 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+++|.|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998653
No 379
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.84 E-value=0.032 Score=45.71 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4568999999999999999988764
No 380
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.84 E-value=0.16 Score=58.06 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=85.5
Q ss_pred HHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHH
Q 047607 166 VWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQE 245 (352)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 245 (352)
+++.+...+ +-+.++|++|+|||++|+.+.... ..+ ..+.++++...+...+...+-..+...... ...-.
T Consensus 1259 ll~~~l~~~-~~vLL~GPpGtGKT~la~~~l~~~----~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~-~g~~~-- 1329 (2695)
T 4akg_A 1259 IFYDLLNSK-RGIILCGPPGSGKTMIMNNALRNS----SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTS-KGLTL-- 1329 (2695)
T ss_dssp HHHHHHHHT-CEEEEECSTTSSHHHHHHHHHHSC----SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEET-TTEEE--
T ss_pred HHHHHHHCC-CeEEEECCCCCCHHHHHHHHHhcC----CCC-ceEEEEeecCCCHHHHHHHHHHHhhhcccc-CCccc--
Confidence 444443333 577899999999999998877654 222 356678887777777666665554321100 00000
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCc--ccc------cccccCC-----CCCCC------CCcEEEEecCChH------HHh
Q 047607 246 KAQEIFKILSDKKFMLLLDDIWEP--VDL------AQVGLPI-----PSPRS------TSSKVVFTSRDFE------VCG 300 (352)
Q Consensus 246 ~~~~l~~~L~~kr~LlVlDdv~~~--~~~------~~l~~~~-----~~~~~------~gs~IiiTTr~~~------v~~ 300 (352)
.-.-.++++++.+||+.-. +.| +-+...+ -+... .+..+|-+|.... +..
T Consensus 1330 -----~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~ 1404 (2695)
T 4akg_A 1330 -----LPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSE 1404 (2695)
T ss_dssp -----EEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCH
T ss_pred -----cCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCCh
Confidence 0000357888889997432 110 0011000 00000 1233444443321 111
Q ss_pred -hccCCceeecCCCCHHHHHHHHHHhhccccccCCCCcHHHHhhhh
Q 047607 301 -QMEAHRSFKVECLAYEDAWELFEEKVGREILLYIPLETNIHQAEV 345 (352)
Q Consensus 301 -~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~i~~~iv 345 (352)
...-...+.+...+.++-..+|.....+-- ...+++..+++.||
T Consensus 1405 rllRrf~vi~i~~P~~~~l~~I~~~il~~~l-~~~~~v~~~~~~lv 1449 (2695)
T 4akg_A 1405 RFTRHAAILYLGYPSGKSLSQIYEIYYKAIF-KLVPEFRSYTEPFA 1449 (2695)
T ss_dssp HHHTTEEEEECCCCTTTHHHHHHHHHHHHHT-TSSGGGGGGHHHHH
T ss_pred hhhheeeEEEeCCCCHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHH
Confidence 111224678999999888888887653211 12345565655554
No 381
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.84 E-value=0.034 Score=45.11 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|.|+|.+|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998765
No 382
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.83 E-value=0.1 Score=49.64 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=54.4
Q ss_pred HHHHHhc-CCcEEEEEEecCCCcHHHHH-HHHHHhhccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----CC
Q 047607 166 VWSCVME-DTIGIVGLYGMGGVGKTTLL-TQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAEKIGLFNE----SW 238 (352)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~ 238 (352)
.++.|.. .+-.-++|.|.+|+|||+|+ ..+.+.. ... ..++++-+.+.. ...++...+...-..... ..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~---~~d-v~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR---DSG-IKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS---SSS-CEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc---cCC-ceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 3444543 23457889999999999996 5666543 222 246788777654 455666665543111100 00
Q ss_pred CCcCH-HH-----HHHHHHHHh--CCCcEEEEEeCCC
Q 047607 239 SSKNV-QE-----KAQEIFKIL--SDKKFMLLLDDIW 267 (352)
Q Consensus 239 ~~~~~-~~-----~~~~l~~~L--~~kr~LlVlDdv~ 267 (352)
...+. .. ..-.+-+++ +++.+||++||+-
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11111 11 112233333 5799999999985
No 383
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.83 E-value=0.033 Score=51.64 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4578999999999999999999864
No 384
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.80 E-value=0.021 Score=49.88 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+...|.|.|..|+||||+++.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999988776
No 385
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.80 E-value=0.021 Score=52.27 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||.+.+.--.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 386
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.79 E-value=0.033 Score=45.51 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|.|+|.+|+|||||...+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4578899999999999999998764
No 387
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.78 E-value=0.3 Score=41.57 Aligned_cols=104 Identities=17% Similarity=0.146 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCC-CEEEEEEeCCccCHHHHHHHHHHHcCCCCCC----
Q 047607 163 FERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF-DFVIWVVVSKDLQLEKIQECVAEKIGLFNES---- 237 (352)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---- 237 (352)
.++++..+..+ ..+.|.|+.|+||||+...+.-+........ ...+.+..........+...+...++.....
T Consensus 66 q~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~ 143 (235)
T 3llm_A 66 ESEILEAISQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGY 143 (235)
T ss_dssp HHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEE
T ss_pred HHHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEE
Confidence 34455555444 5889999999999987665543321112222 2233333333323334444444444321100
Q ss_pred --------------CCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 047607 238 --------------WSSKNVQEKAQEIFKILSDKKFMLLLDDIWEP 269 (352)
Q Consensus 238 --------------~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~ 269 (352)
..-.....+...+...+.+- -+||+|+++..
T Consensus 144 ~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 144 SVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp EETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred eechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 00023344555555544333 47899999873
No 388
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.77 E-value=0.034 Score=44.32 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|.++|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998754
No 389
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.77 E-value=0.031 Score=45.50 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-|.|+|.+|+|||||...+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998754
No 390
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.77 E-value=0.036 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
--|.|+|.+|+|||||...+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998654
No 391
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.77 E-value=0.034 Score=44.65 Aligned_cols=25 Identities=40% Similarity=0.359 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|.|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998765
No 392
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.75 E-value=0.034 Score=45.15 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 458899999999999999998765
No 393
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.75 E-value=0.074 Score=48.54 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=25.2
Q ss_pred HhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 170 VMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 170 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.....+++.+.|.||+||||+|..+....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 334567899999999999999999998766
No 394
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.74 E-value=0.027 Score=45.46 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
--|.++|.+|+|||||...+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 458899999999999999998764
No 395
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.73 E-value=0.058 Score=45.90 Aligned_cols=25 Identities=36% Similarity=0.194 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhc
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFL 200 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (352)
-.|.+.|.||+||||+|..+.....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4588899999999999999988873
No 396
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.72 E-value=0.035 Score=44.98 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568999999999999999998764
No 397
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.70 E-value=0.047 Score=45.65 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=23.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|.|+.|+||||+++.+...+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999987
No 398
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.67 E-value=0.068 Score=50.49 Aligned_cols=102 Identities=11% Similarity=0.058 Sum_probs=57.2
Q ss_pred HHHHHhcC-CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCC-CEEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----CC
Q 047607 166 VWSCVMED-TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF-DFVIWVVVSKDL-QLEKIQECVAEKIGLFNE----SW 238 (352)
Q Consensus 166 l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~ 238 (352)
.++.|..- +-.-++|.|.+|+|||+|+.++.++....+..- +.++++-+.+.. ...++..++...-..... ..
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 34444432 335677889999999999999999872111111 356676666543 456666666553211000 00
Q ss_pred CCcCHH------HHHHHHHHHhC---CCcEEEEEeCCC
Q 047607 239 SSKNVQ------EKAQEIFKILS---DKKFMLLLDDIW 267 (352)
Q Consensus 239 ~~~~~~------~~~~~l~~~L~---~kr~LlVlDdv~ 267 (352)
...+.. ...-.+.++++ ++.+||++||+-
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 111111 11223444443 689999999974
No 399
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.67 E-value=0.039 Score=44.64 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|+|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998654
No 400
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.66 E-value=0.065 Score=55.32 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=20.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQI 195 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v 195 (352)
...+++|.|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999998
No 401
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.66 E-value=0.042 Score=49.98 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+..+++|+|++|+|||||.+.+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456899999999999999999998654
No 402
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.65 E-value=0.058 Score=48.19 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 163 FERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+++|.+.+. -.+++++|++|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 556666654 3589999999999999999999 54
No 403
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.64 E-value=0.037 Score=44.82 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
--|+++|.+|+|||||...+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998654
No 404
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.64 E-value=0.059 Score=49.70 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=55.9
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCC-CCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHH
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNH-FDFVIWVVVSKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIF 251 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (352)
....+++|+|+.|+|||||++.+..... .. -..++++.-.-.... -...+.-....-..+.......+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~~e~~~e~~~-------~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPIEYVF-------KHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEEEESSCCSCC-------CCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEEecccHhhhh-------ccCceEEEeeecCCCHHHHHHHHH
Confidence 3557999999999999999999988652 11 122223321100000 000000000000000111234566
Q ss_pred HHhCCCcEEEEEeCCCCcccccccccCCCCCCCCCcEEEEecCChH
Q 047607 252 KILSDKKFMLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRDFE 297 (352)
Q Consensus 252 ~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~~~ 297 (352)
..|....-+|++|++.+.+.+...... . ..|..|+.|+...+
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~---~-~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRA---A-ETGHLVFGTLHTNT 245 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHH---H-TTTCEEEECCCCCS
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHH---H-hcCCEEEEEECcch
Confidence 666666778889998765443332211 1 24556777776544
No 405
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.64 E-value=0.037 Score=45.10 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|+|+|.+|+|||||...+....
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998754
No 406
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.61 E-value=0.041 Score=50.26 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+-.+++|+|+.|+|||||.+.+....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999999987
No 407
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.60 E-value=0.037 Score=45.38 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998765
No 408
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.59 E-value=0.028 Score=52.99 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+|.|+|++|+||||++..+....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 409
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.59 E-value=0.043 Score=44.97 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4568999999999999999998765
No 410
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.58 E-value=0.036 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
-|+|+|++|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3599999999999999998754
No 411
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.58 E-value=0.041 Score=45.38 Aligned_cols=24 Identities=38% Similarity=0.342 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998754
No 412
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.57 E-value=0.039 Score=44.57 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999988754
No 413
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.57 E-value=0.038 Score=44.54 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-|.|+|.+|+|||||...+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 414
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.55 E-value=0.046 Score=52.08 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.++|++|+||||+++.+....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 415
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.54 E-value=0.039 Score=44.64 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|.|+|.+|+|||||...+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568999999999999999998765
No 416
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.51 E-value=0.45 Score=40.62 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=19.4
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+.|+|+.|.|||.+|..+....
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7889999999999998887765
No 417
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.50 E-value=0.04 Score=45.39 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.4
Q ss_pred cCCcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 172 EDTIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
..+..-|.|+|.+|+|||||...+...
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 345567999999999999999998653
No 418
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.49 E-value=0.042 Score=45.90 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...-|.|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998864
No 419
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.49 E-value=0.04 Score=45.56 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...-|.|+|.+|+|||||...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999998764
No 420
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.49 E-value=0.024 Score=47.23 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=21.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
.....++|+|.+|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999888654
No 421
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.042 Score=45.10 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998765
No 422
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.47 E-value=0.041 Score=47.10 Aligned_cols=50 Identities=22% Similarity=0.151 Sum_probs=32.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECV 227 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 227 (352)
.-.++.|.|.+|+|||+||.+++.+.. ...-..++|++... +...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~--~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA--EEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCceeecccC--CHHHHHHHH
Confidence 346899999999999999998765431 12223466666543 344444433
No 423
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.46 E-value=0.053 Score=44.63 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...--|+|+|.+|+|||||...+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345678999999999999999998764
No 424
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.46 E-value=0.042 Score=44.29 Aligned_cols=25 Identities=40% Similarity=0.409 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.++|.+|+|||||...+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998765
No 425
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.45 E-value=0.095 Score=45.55 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=27.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeC
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 215 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 215 (352)
++|+|.|-||+||||+|..+..... ...+ .+.-|...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~-~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGK-TIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTC-CEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCC-cEEEEcCC
Confidence 5788899999999999999998883 2222 34555543
No 426
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.41 E-value=0.044 Score=45.62 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|+|+|.+|+|||||...+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568999999999999999988764
No 427
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.40 E-value=0.042 Score=45.51 Aligned_cols=26 Identities=42% Similarity=0.470 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999998764
No 428
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.40 E-value=0.041 Score=44.71 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....-|.++|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 456779999999999999999998654
No 429
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.40 E-value=0.04 Score=44.33 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|+|+|.+|+|||||...+....
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999987654
No 430
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.39 E-value=0.062 Score=45.88 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=20.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|.|-|+.|+||||+++.+....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 431
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.38 E-value=0.045 Score=45.30 Aligned_cols=26 Identities=31% Similarity=0.250 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...-|+|+|.+|+|||||...+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45678999999999999999998765
No 432
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.37 E-value=0.033 Score=46.09 Aligned_cols=24 Identities=42% Similarity=0.427 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHH
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINN 197 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~ 197 (352)
...-|.|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 346789999999999999999853
No 433
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.36 E-value=0.043 Score=45.01 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999998874
No 434
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.30 E-value=0.041 Score=45.40 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|.++|.+|+|||||.+.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 4578999999999999999777643
No 435
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.29 E-value=0.045 Score=44.70 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998765
No 436
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.29 E-value=0.045 Score=44.73 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998754
No 437
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.27 E-value=0.045 Score=45.73 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|.|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998764
No 438
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.27 E-value=0.046 Score=44.78 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998765
No 439
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.25 E-value=0.046 Score=44.86 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.++|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998865
No 440
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.25 E-value=0.051 Score=44.61 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCC
Confidence 34568999999999999999998754
No 441
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.21 E-value=0.21 Score=49.53 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 047607 163 FERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 229 (352)
.+.+...|... .+..|+||||.|||+.+..+...... . ...+.++..++..+..++..+..
T Consensus 195 ~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~--~--~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 195 KEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVK--Q--GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHH--T--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHh--C--CCeEEEEcCchHHHHHHHHHHHh
Confidence 34455555432 47789999999999555444444311 2 23678888877777777776654
No 442
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.20 E-value=0.11 Score=43.58 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..|+|=|..|+||||+++.+...+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468889999999999999999988
No 443
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.18 E-value=0.04 Score=50.63 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||++.+....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34689999999999999999998876
No 444
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.16 E-value=0.11 Score=44.51 Aligned_cols=40 Identities=30% Similarity=0.332 Sum_probs=28.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 178 VGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
|+|.|-||+||||+|..+..... +.. ..+.-|......++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la--~~g-~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA--SDY-DKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT--TTC-SCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHHH--HCC-CeEEEEeCCCCcCh
Confidence 66689999999999999999883 222 34556665444443
No 445
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.16 E-value=0.048 Score=44.21 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|.|+|.+|+|||||...+....
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998654
No 446
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.15 E-value=0.044 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-|.|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 447
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.15 E-value=0.076 Score=47.38 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 163 FERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
++++...+.. .+++|+|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhcC---CeEEEECCCCCcHHHHHHHhcccc
Confidence 5566666643 588999999999999999997765
No 448
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.15 E-value=0.048 Score=44.67 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998754
No 449
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.13 E-value=0.047 Score=45.25 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568999999999999999997654
No 450
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.12 E-value=0.05 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
--|.|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 568999999999999999998764
No 451
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.11 E-value=0.05 Score=44.43 Aligned_cols=26 Identities=27% Similarity=0.165 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...-|.|+|.+|+|||||...+....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 34679999999999999999998654
No 452
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.10 E-value=0.052 Score=45.01 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998754
No 453
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.09 E-value=0.062 Score=47.03 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|+++|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998754
No 454
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.07 E-value=0.078 Score=44.28 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|+|+|++|+||+|+|..+.+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45799999999999999999997755
No 455
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.06 E-value=0.05 Score=44.96 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...-|+|+|.+|+|||||...+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 45779999999999999999998754
No 456
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.04 E-value=0.052 Score=48.46 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
+...|+|+|.+|+|||||...+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34689999999999999999998764
No 457
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.03 E-value=0.066 Score=48.69 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 173 DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+..+++|+|.+|+|||||+..+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999997654
No 458
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.02 E-value=0.047 Score=45.07 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..--|.|+|.+|+|||||...+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568899999999999999998654
No 459
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.00 E-value=0.056 Score=44.29 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|.++|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998764
No 460
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.94 E-value=0.048 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45789999999999999999998754
No 461
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.94 E-value=0.057 Score=44.98 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.6
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+.+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998754
No 462
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.94 E-value=0.057 Score=44.91 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 463
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.88 E-value=0.053 Score=45.49 Aligned_cols=26 Identities=38% Similarity=0.406 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..--|.|+|.+|+|||||...+.+..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999998653
No 464
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.87 E-value=0.06 Score=44.65 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|.|+|.+|+|||||...+....
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 4568999999999999999997654
No 465
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.85 E-value=0.056 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 047607 177 IVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-|.|+|.+|+|||+|+..+.+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 47899999999999999988654
No 466
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.84 E-value=0.072 Score=47.01 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhhc
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKFL 200 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (352)
++|+|.|.||+||||+|..+.....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La 27 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALA 27 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHH
Confidence 6788899999999999999998873
No 467
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.80 E-value=0.062 Score=44.47 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568999999999999999998754
No 468
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.77 E-value=0.058 Score=45.45 Aligned_cols=23 Identities=39% Similarity=0.381 Sum_probs=20.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINN 197 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~ 197 (352)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999874
No 469
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.76 E-value=0.063 Score=45.49 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...-|+|+|.+|+|||||...+....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998754
No 470
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.76 E-value=0.052 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNK 198 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (352)
.-++|+|+.|+|||||.+.++..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCc
Confidence 33999999999999999999865
No 471
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.74 E-value=0.064 Score=50.58 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.-..++|+|+.|+|||||++.+....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999999887
No 472
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.73 E-value=0.17 Score=50.02 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHHhcCCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 047607 158 GLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAE 229 (352)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 229 (352)
+.++...+.+..... .++..|.|++|.|||+++..+..... ..-...+.++...+.....+...+..
T Consensus 180 ~ln~~Q~~av~~~l~--~~~~li~GppGTGKT~~~~~~i~~l~---~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQ--RPLSLIQGPPGTGKTVTSATIVYHLA---RQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHT--CSEEEEECCTTSCHHHHHHHHHHHHH---TSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc--CCCeEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 444444444443333 25778999999999998888877662 22345677777777666776666543
No 473
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.72 E-value=0.061 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+++|+|++|+|||||.+.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 589999999999999999998765
No 474
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.72 E-value=0.06 Score=44.77 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4678999999999999999998654
No 475
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.70 E-value=0.073 Score=52.38 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.+.|++|+||||+|+.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998876
No 476
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.64 E-value=0.036 Score=44.90 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=10.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEEEECCCCC-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3568999999999999999887653
No 477
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.59 E-value=0.088 Score=41.66 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..+.+|+|+.|+|||||...++.-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999987644
No 478
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.59 E-value=0.071 Score=45.58 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45789999999999999999998765
No 479
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.58 E-value=0.096 Score=44.57 Aligned_cols=26 Identities=12% Similarity=0.104 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...+|.|.|+.|+||||+|+.+....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999999876
No 480
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.57 E-value=0.093 Score=42.67 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-.-+.|.|.+|+||||||..+..+-
T Consensus 16 G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 3678899999999999999998753
No 481
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.54 E-value=0.066 Score=44.95 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+....
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998764
No 482
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.50 E-value=0.077 Score=43.47 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...-|.|+|.+|+|||||...+....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999997754
No 483
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.47 E-value=0.15 Score=44.35 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=26.5
Q ss_pred HHHHHHhcC--CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 165 RVWSCVMED--TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 165 ~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
++.+.+... +...|+++|.+|+|||||...+....
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444432 45679999999999999999998765
No 484
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.38 E-value=0.046 Score=44.71 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.9
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|+|+|.+|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998765
No 485
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.37 E-value=0.09 Score=44.51 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=23.2
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
...|.+-|+.|+||||+++.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999998
No 486
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.35 E-value=0.07 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhh
Q 047607 176 GIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.+++|+|+.|+|||||.+.+..-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 799999999999999999998765
No 487
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.33 E-value=0.14 Score=48.15 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHHHhc-----------CCcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 157 VGLQSTFERVWSCVME-----------DTIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 157 vGr~~~~~~l~~~L~~-----------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.|.++.++.+.+.+.. ....-++|+|.+|+|||||...+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 4667777777766642 123579999999999999999998764
No 488
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.31 E-value=0.11 Score=42.91 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=29.1
Q ss_pred EEEEEE-ecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccCH
Q 047607 176 GIVGLY-GMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 220 (352)
Q Consensus 176 ~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 220 (352)
++|+|+ +-||+||||+|..+...... .-..+.-+......+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~---~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR---SGYNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH---CCCeEEEEECCCCCCH
Confidence 578888 66899999999999988732 2224566666544433
No 489
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.27 E-value=0.07 Score=43.78 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=20.3
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
..-|.|+|.+|+|||||...+....
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999997654
No 490
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.17 E-value=0.066 Score=44.79 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999988654
No 491
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.16 E-value=0.074 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-.+++|+|+.|+|||||++.+....
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998754
No 492
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.15 E-value=0.075 Score=47.58 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....|+|+|.+|+|||||...+....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35789999999999999999998764
No 493
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.14 E-value=0.075 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-.+++|+|+.|+|||||++.++...
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999865
No 494
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.07 E-value=0.099 Score=45.27 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999998654
No 495
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.01 E-value=0.067 Score=51.86 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
-.+++|+|+.|+|||||++.++.-.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998765
No 496
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.98 E-value=0.18 Score=43.96 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 174 TIGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
....|.++|.+|+|||||...+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 35679999999999999999998765
No 497
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.88 E-value=0.17 Score=43.12 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=51.1
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEe-CCccCHHHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHH
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV-SKDLQLEKIQECVAEKIGLFNESWSSKNVQEKAQEIFKI 253 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (352)
..+..++|.-|.||||-+.....+.. .......++-.. ..... . .+.+.++.........+..+. .+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~~di----~~~ 87 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLLRDV----AQE 87 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEEEETTCCCC----------------CEEEEESSGGGG----HHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEeecCCccch-H----HHHhhcCCeeEEEecCCHHHH----HHH
Confidence 46889999999999987777776662 344444444322 22222 2 344444432211111111222 222
Q ss_pred hCCCcE-EEEEeCCCCcccccccccCCCCCCCCCcEEEEecCC
Q 047607 254 LSDKKF-MLLLDDIWEPVDLAQVGLPIPSPRSTSSKVVFTSRD 295 (352)
Q Consensus 254 L~~kr~-LlVlDdv~~~~~~~~l~~~~~~~~~~gs~IiiTTr~ 295 (352)
. +++ +|++|++.-.....++...+. ..|-.||+|-++
T Consensus 88 ~--~~~dvViIDEaQF~~~v~el~~~l~---~~gi~VI~~GL~ 125 (234)
T 2orv_A 88 A--LGVAVIGIDEGQFFPDIVEFCEAMA---NAGKTVIVAALD 125 (234)
T ss_dssp H--TTCSEEEESSGGGCTTHHHHHHHHH---HTTCEEEEECCS
T ss_pred h--ccCCEEEEEchhhhhhHHHHHHHHH---hCCCEEEEEecc
Confidence 2 334 899999854332333322222 246789998887
No 498
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.86 E-value=0.066 Score=50.14 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 047607 178 VGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (352)
|+|+|.+|+|||||.+.++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999998764
No 499
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.86 E-value=0.6 Score=44.93 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHHHHhc-CCcEEEEEEecCCCcHHHHHHHHHHhhccCCCCCCEEEEEEeCCccC-HHHHHHHH
Q 047607 166 VWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQ-LEKIQECV 227 (352)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 227 (352)
.++.|.. .+-.-++|.|.+|+|||+|+.++.+.. +-+.++++-+.+..+ ..++..++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4555544 245688999999999999999987754 225788888887654 44444443
No 500
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.086 Score=44.42 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCcHHHHHHHHHHhh
Q 047607 175 IGIVGLYGMGGVGKTTLLTQINNKF 199 (352)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (352)
.--|.|+|.+|+|||||...+....
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998754
Done!