Query 047609
Match_columns 696
No_of_seqs 379 out of 1403
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 12:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2197 Ypt/Rab-specific GTPas 100.0 5.8E-48 1.3E-52 430.1 16.7 460 53-692 2-469 (488)
2 KOG2224 Uncharacterized conser 100.0 1.1E-37 2.3E-42 331.5 14.5 290 91-611 401-726 (781)
3 KOG1092 Ypt/Rab-specific GTPas 100.0 1.3E-37 2.7E-42 332.3 13.9 202 395-619 250-478 (484)
4 KOG4567 GTPase-activating prot 100.0 1.3E-34 2.8E-39 300.2 18.6 160 430-592 173-346 (370)
5 smart00164 TBC Domain in Tre-2 100.0 5.7E-34 1.2E-38 280.5 15.8 143 395-553 53-198 (199)
6 KOG2058 Ypt/Rab GTPase activat 100.0 4.6E-33 1E-37 304.3 14.7 200 370-590 179-382 (436)
7 COG5210 GTPase-activating prot 100.0 1.1E-29 2.3E-34 285.4 18.4 167 389-577 258-427 (496)
8 PF00566 RabGAP-TBC: Rab-GTPas 99.9 1.7E-27 3.7E-32 234.9 16.0 168 386-575 45-212 (214)
9 KOG2223 Uncharacterized conser 99.9 2.9E-25 6.3E-30 237.8 13.0 190 380-592 347-540 (586)
10 KOG2222 Uncharacterized conser 99.8 1.1E-20 2.4E-25 204.1 11.3 177 395-593 218-403 (848)
11 KOG1091 Ypt/Rab-specific GTPas 99.8 1.4E-20 3E-25 207.8 12.3 188 386-592 103-347 (625)
12 KOG4347 GTPase-activating prot 99.8 3.1E-19 6.7E-24 200.0 10.1 196 371-590 227-424 (671)
13 KOG4436 Predicted GTPase activ 99.8 2.6E-18 5.6E-23 195.1 13.1 199 388-614 622-826 (948)
14 KOG1093 Predicted protein kina 99.7 9.9E-18 2.1E-22 185.4 13.9 165 423-592 409-576 (725)
15 KOG1102 Rab6 GTPase activator 99.7 8.1E-18 1.8E-22 185.0 7.0 175 394-591 190-368 (397)
16 KOG2595 Predicted GTPase activ 99.7 6.5E-16 1.4E-20 163.0 14.3 124 426-551 122-246 (395)
17 KOG2221 PDZ-domain interacting 99.4 4.8E-13 1E-17 134.6 5.3 123 388-528 143-267 (267)
18 KOG3636 Uncharacterized conser 99.2 8.4E-11 1.8E-15 127.9 11.6 122 426-552 90-213 (669)
19 KOG1648 Uncharacterized conser 98.8 1.9E-10 4.1E-15 126.2 -4.4 125 419-552 621-745 (813)
20 KOG4436 Predicted GTPase activ 98.7 1.3E-08 2.7E-13 117.4 7.0 149 388-555 228-388 (948)
21 KOG2197 Ypt/Rab-specific GTPas 98.1 1.4E-06 3E-11 98.9 1.6 82 94-176 147-228 (488)
22 KOG2801 Probable Rab-GAPs [Int 97.0 0.0025 5.5E-08 67.6 8.9 142 424-571 107-250 (559)
23 KOG2224 Uncharacterized conser 94.3 0.016 3.4E-07 64.3 0.9 35 444-478 565-599 (781)
24 PF14961 BROMI: Broad-minded p 91.5 0.88 1.9E-05 56.7 10.0 158 428-591 1083-1260(1296)
25 PF00566 RabGAP-TBC: Rab-GTPas 69.1 5.9 0.00013 39.1 4.1 33 127-172 1-33 (214)
26 PRK05414 urocanate hydratase; 52.4 22 0.00048 41.4 5.3 80 108-188 239-327 (556)
27 TIGR01228 hutU urocanate hydra 52.3 22 0.00048 41.2 5.2 79 108-186 230-316 (545)
28 KOG2058 Ypt/Rab GTPase activat 43.7 21 0.00047 40.8 3.5 47 96-142 122-174 (436)
29 COG2987 HutU Urocanate hydrata 40.1 42 0.0009 38.7 4.9 81 108-188 239-327 (561)
30 KOG2595 Predicted GTPase activ 37.3 34 0.00074 38.1 3.6 40 125-164 62-134 (395)
31 PF01175 Urocanase: Urocanase; 32.1 55 0.0012 38.2 4.4 72 108-180 229-309 (546)
32 PHA02939 hypothetical protein; 26.8 74 0.0016 30.4 3.5 42 135-176 75-139 (144)
33 PHA02629 A-type inclusion body 21.5 51 0.0011 27.0 1.2 14 41-54 14-27 (61)
No 1
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-48 Score=430.14 Aligned_cols=460 Identities=35% Similarity=0.528 Sum_probs=324.9
Q ss_pred CCCcccccccCccCcchhhhcccccccCCCCCCCCC----CCcCCCCCHHHHhhhhCCCCCccCHHHHHHHHHhCCCCCC
Q 047609 53 GGGQEQWDCGKSGTLNFQRVGSIVRDIGDPCLSHSH----IKVSRILKPEKWQACFDSDGKVSGFHKALKLIVLGGVDPS 128 (696)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~----~~~~~~Ls~~~W~~~fd~~Grl~~~~~~~k~I~~GGvdps 128 (696)
|+..++|.+.+.+...+...+..|.+++++|..+++ ++++++|++++|++.|+++|++.+..+++++|+.|||||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~ps 81 (488)
T KOG2197|consen 2 GSESKQWDSLKSLLLSLDSSSFTVVDSREPCLSQSRIWVLIKPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPS 81 (488)
T ss_pred CccchhhhhcccceEEEeeccCccccccccccccCCcceeeccccccchhhhhhccCCCccccchhhhheeeecCCCCCc
Confidence 567899999999999999999999999999988866 8899999999999999999999989999999999999999
Q ss_pred chhhhHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcceeeccccccccccCCCCCCCccccccCC
Q 047609 129 IRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVMHSSIGTGSLAYVVGSKVMDMRTSSKDDGPREAKVESG 208 (696)
Q Consensus 129 iR~EVWpFLLG~Y~~~ST~eER~~l~~~~r~eY~~lk~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (696)
||+|||+||||||++++|++||..+|..+|.+|..|+.+|+.|++.++++ +.+++++.+++.+.++-.
T Consensus 82 ir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c~~~~~~~~~~-~~~~~~~~~~~~~~p~~~----------- 149 (488)
T KOG2197|consen 82 IRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVCQMMKSTVGNG-LSYVVSSVVSDNRSPSLT----------- 149 (488)
T ss_pred ccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHcchhhhhhccc-cceeeeEEeecCCCCcch-----------
Confidence 99999999999999999999999999999999999999999999999987 566777777776654300
Q ss_pred CCccCCCCcCccccC-CCCCCCcchhhhccccccccccccccccccccccccccccccCCCCCCCCCCCcCccCCCCCcc
Q 047609 209 EPSVDNTNQSKSFYD-SSKNCTDISYACQKESSIDSADLVSVRESADSAAYDSSCFISASGPCNCSSLKRGREARGSPYV 287 (696)
Q Consensus 209 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (696)
++++.. +............++ .+..++. .+ ..+ ..+
T Consensus 150 ---------~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~---------------~~-------~l~---------~~~ 186 (488)
T KOG2197|consen 150 ---------LEEYNSNAMREGRLDESVHQRE---RIFSGGL---------------SK-------SLR---------AEV 186 (488)
T ss_pred ---------hhhhhhhhhhccccccchhhhh---eeccccc---------------cc-------chh---------hhh
Confidence 000000 000000000000000 0000000 00 000 000
Q ss_pred cccccCCCCC-CccccccccccccCCCCcccCCcchhhhhccccccccccccccchhhhhhcCCCCCCcccccccchhhh
Q 047609 288 TESYIDFPPL-PITDLFEKNGKYEKNNGVCEEKPSTRHKLRLEDDRMHSFQIANNADLIMESNGSPSNSISHHMKSEIEM 366 (696)
Q Consensus 288 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~s~~e~ 366 (696)
.....+|.+= ..++...- ..+. .++......+|. ..+...+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~k~qW~--------------------~~~~~~~~------------- 229 (488)
T KOG2197|consen 187 WKFLLDYSPWDSTTRERVS---LRKL-TDEYFRLKLQWS--------------------STSPEQSP------------- 229 (488)
T ss_pred hhhhhcccCcccccccccc---cccc-cccHhhhhhhhe--------------------eccccccc-------------
Confidence 0000000000 00000000 0000 112222333332 22221110
Q ss_pred cCCCCCccccccCCccchHHHhhhhccccCCCCCCCCCCCCCCcchhhhhhhhccccCchh--HHHHHHHHHHhhhcCCC
Q 047609 367 ASPGSHEPELWSNSQDFKTEITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKN--LARMSDILAVYAWVDPA 444 (696)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~eild~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~~~~--~~~L~rIL~aYA~~nPd 444 (696)
+..+ -++-...|.+ | |.++||. ++||....+ ..+|.+||.+|+.+|++
T Consensus 230 -~~~~------------~~~~~~~i~~-d--------------v~rtDr~--~~~~~~~~n~~~~~l~~iL~ty~~~~~d 279 (488)
T KOG2197|consen 230 -ESEG------------YLERKSRIEK-D--------------VGRTDRS--LEFYEGEENPHLARLVDILLTYAVYDFD 279 (488)
T ss_pred -cccc------------hhhhhhhhhh-h--------------ccccchh--hhhhhcccccCHHHHHHHHhhcccccCc
Confidence 0000 0111222333 4 4455665 788876655 99999999999999999
Q ss_pred CcccCChhHHHHHHHHhhhchhhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhh
Q 047609 445 TGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFA 524 (696)
Q Consensus 445 IGYcQGMNdIaapLLlv~~dE~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa 524 (696)
+||||||+++++|++.++.+|.+|||||+.+|++++++|..+ ..|+..++..+..+++..||.||+||+.++....+|+
T Consensus 280 ~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF~~d-~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~ 358 (488)
T KOG2197|consen 280 LGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNFRID-QSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFC 358 (488)
T ss_pred cccccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcCccc-cccHHHHhhhhhhhccccCHHHHhhccccCCCcccee
Confidence 999999999999999999999999999999999999999765 6799999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCChhHHHHHhhHHHHhccchhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCCCCCCCCCCCCCCCc
Q 047609 525 FRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRESVVIREGSTENSGGDLKGGLQPKNGNIE 604 (696)
Q Consensus 525 ~rWfltLFsreLp~e~vlRLWDv~faeG~~~~~~~~L~yvclA~Lll~~~~~L~d~~E~m~~Lq~~p~~~~~k~~~~d~e 604 (696)
++|+++.|.|+|.++++++||+++|+.-++. .|.+|++.|+|-. -++.+
T Consensus 359 fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~---~f~~~~~~~~l~~-~~~~l--------------------------- 407 (488)
T KOG2197|consen 359 FRMLLVPFRREFEFEDSLRLWEVLWTDLPSP---HFHLYVAPAILNK-DPQTL--------------------------- 407 (488)
T ss_pred eehhhcccccccccccHHHHHHHHHhcCccc---hHHHHHHHhhhhc-chHHH---------------------------
Confidence 9999999999999999999999999995544 7788888887663 11111
Q ss_pred cccccccccccccccCccccccccccccCCCCCcccccccCCCCCCcchHHHHHHHHhhhhhhHhhcCChHHHHHHHHHH
Q 047609 605 CSVSADDGIKSASAHPFCGLTRTFWSRNGHSQNFTVVSSTWNVNEELPVFCVAAILIMNRHKVMKETRSIDDMIKAGVLL 684 (696)
Q Consensus 605 ~lla~~~~mK~~~~~~~~G~~~~~w~r~~~~~~~~~~~~~~~~~~~l~vf~vAail~~~r~~ii~~~~~~dd~ik~~~~~ 684 (696)
..+|. ..-|.+ ++ +.......+.+.+|++|..+...++++++..+++++++. .+
T Consensus 408 ---------------~~~~~-~~~e~l----~~---i~~~~~~~d~~~~~~~A~~~~~~~k~~~~~~~~~~~~~~---~~ 461 (488)
T KOG2197|consen 408 ---------------MEQGK-SFNEVL----KH---VNLLSEKADVLWVLVRAEALERQNKQMEEPPEVMDEIES---IL 461 (488)
T ss_pred ---------------HhcCc-cchhHH----hh---cccccccchhhhHHHHHHHHHHHHHhccccccchhhhhh---cc
Confidence 00111 011111 10 011223468999999999999999999999999999997 55
Q ss_pred HhhhhccC
Q 047609 685 NFYDTIFP 692 (696)
Q Consensus 685 ~~~~~~~~ 692 (696)
|-..+++|
T Consensus 462 ~~~~~~l~ 469 (488)
T KOG2197|consen 462 QITAGPLD 469 (488)
T ss_pred cCCCCCCC
Confidence 55555444
No 2
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=331.49 Aligned_cols=290 Identities=28% Similarity=0.435 Sum_probs=223.6
Q ss_pred cCCCCCHHHHhh-hhCCCCCccCHHHHHHHHHhCCCCCCchhhhHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047609 91 VSRILKPEKWQA-CFDSDGKVSGFHKALKLIVLGGVDPSIRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQ 169 (696)
Q Consensus 91 ~~~~Ls~~~W~~-~fd~~Grl~~~~~~~k~I~~GGvdpsiR~EVWpFLLG~Y~~~ST~eER~~l~~~~r~eY~~lk~q~~ 169 (696)
.+|.++...|-. ..++-|+|.+.-+++|.||+||||.+||+|||||||.||+..||+|+|++++-++|+||+++++...
T Consensus 401 ~~kki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrl 480 (781)
T KOG2224|consen 401 DVKKIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRL 480 (781)
T ss_pred hhhhhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888887 8999999999999999999999999999999999999999999999999999999999999966542
Q ss_pred -HhhcccCCCcceeeccccccccccCCCCCCCccccccCCCCccCCCCcCccccCCCCCCCcchhhhccccccccccccc
Q 047609 170 -VMHSSIGTGSLAYVVGSKVMDMRTSSKDDGPREAKVESGEPSVDNTNQSKSFYDSSKNCTDISYACQKESSIDSADLVS 248 (696)
Q Consensus 170 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 248 (696)
+|.|.--
T Consensus 481 ysmspeeh------------------------------------------------------------------------ 488 (781)
T KOG2224|consen 481 YSMSPEEH------------------------------------------------------------------------ 488 (781)
T ss_pred hcCCHHHH------------------------------------------------------------------------
Confidence 2211000
Q ss_pred cccccccccccccccccCCCCCCCCCCCcCccCCCCCcccccccCCCCCCccccccccccccCCCCcccCCcchhhhhcc
Q 047609 249 VRESADSAAYDSSCFISASGPCNCSSLKRGREARGSPYVTESYIDFPPLPITDLFEKNGKYEKNNGVCEEKPSTRHKLRL 328 (696)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 328 (696)
..-||
T Consensus 489 ------------------------------------------------------------------------~~fwk--- 493 (781)
T KOG2224|consen 489 ------------------------------------------------------------------------IAFWK--- 493 (781)
T ss_pred ------------------------------------------------------------------------HHHHh---
Confidence 00021
Q ss_pred ccccccccccccchhhhhhcCCCCCCcccccccchhhhcCCCCCccccccCCccchHHHhhhhccccCCCCCCCCCCCCC
Q 047609 329 EDDRMHSFQIANNADLIMESNGSPSNSISHHMKSEIEMASPGSHEPELWSNSQDFKTEITDRLRISDAPDVPLNTTTSPG 408 (696)
Q Consensus 329 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~~~~s~~~~~~~eild~Irl~DVpRTfp~~~~s~~ 408 (696)
|+.. + +. +
T Consensus 494 ------------nvq~-----------t----------------------------------vd-k-------------- 501 (781)
T KOG2224|consen 494 ------------NVQF-----------T----------------------------------VD-K-------------- 501 (781)
T ss_pred ------------heEE-----------E----------------------------------Ee-c--------------
Confidence 0000 0 00 1
Q ss_pred Ccchhhhhhhhcccc--CchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhchhhHHHHHHHHHHhhh------
Q 047609 409 EAVNEERIVILNSMR--MTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMR------ 480 (696)
Q Consensus 409 ~vi~~Dr~v~l~FF~--~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE~dAFw~F~~LM~rir------ 480 (696)
+|+++||. .+||. ++++.+.|+|||..||.|||.+||.|||++++||.|.-..+|.++||||+.||..+.
T Consensus 502 dvvrtdrn--n~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapi 579 (781)
T KOG2224|consen 502 DVVRTDRN--NPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPI 579 (781)
T ss_pred ceeeccCC--CCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhH
Confidence 46666776 78886 478999999999999999999999988888888888777777778888877776421
Q ss_pred -------------------cccCC--CChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCC--cchhhHHHHHHhhccCCC
Q 047609 481 -------------------NNFQM--EGPTGVMKQLEELWHILELTDREMYKHLSNIGAE--SLHFAFRMLLVLFRRELS 537 (696)
Q Consensus 481 -------------------~~f~~--~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~--~~lFa~rWfltLFsreLp 537 (696)
..|+. +.-..+-..+-.+..||+...|..|+||.++|-+ ..+||-||++++|.|+||
T Consensus 580 laevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ 659 (781)
T KOG2224|consen 580 LAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFP 659 (781)
T ss_pred HHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhccc
Confidence 11221 1123566678889999999999999999998754 457999999999999999
Q ss_pred hhHHHHHhhHHHHhccchhHHHHHHHHHHHHHHHHhhcch---hhhhhhhhccCCCCCCCCCCCCCCCCcccccccc
Q 047609 538 FNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRES---VVIREGSTENSGGDLKGGLQPKNGNIECSVSADD 611 (696)
Q Consensus 538 ~e~vlRLWDv~faeG~~~~~~~~L~yvclA~Lll~~~~~L---~d~~E~m~~Lq~~p~~~~~k~~~~d~e~lla~~~ 611 (696)
-..++|||+..|++ ...-+|.+++|+|++.+.-.+.+ ..-.|++.-..++.. +.|++..+-++-
T Consensus 660 ea~airiweacwa~---y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam-------~mdgelilrkar 726 (781)
T KOG2224|consen 660 EAEAIRIWEACWAH---YLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAM-------HMDGELILRKAR 726 (781)
T ss_pred HHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhh-------hcCchhhHHHHH
Confidence 99999999999998 56677888999999887766666 344556666666542 456655555543
No 3
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-37 Score=332.25 Aligned_cols=202 Identities=26% Similarity=0.429 Sum_probs=185.8
Q ss_pred cCCCCCCCCCCCCCCcchhhhhhhhccccCchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhh-----------
Q 047609 395 DAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFE----------- 463 (696)
Q Consensus 395 DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~----------- 463 (696)
|+||+-|. ..+|..+..++.|.|||+.||.++|..||+||.|+++.|++.++.
T Consensus 250 d~prm~p~----------------~~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~ 313 (484)
T KOG1092|consen 250 DIPRMNPH----------------IPLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVE 313 (484)
T ss_pred CCCCCCcc----------------ccchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCcccccc
Confidence 88888776 467778889999999999999999999999999999999998872
Q ss_pred --------------chhhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHH
Q 047609 464 --------------DNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLL 529 (696)
Q Consensus 464 --------------dE~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfl 529 (696)
.|+|+|||+.+|++.++++|.+. .+|++++...|+.|++++|+.||+||+++|++...|+|||+.
T Consensus 314 ~~d~~~l~~E~~~~iEADsyWClskLLD~IQDNYtfa-QpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmN 392 (484)
T KOG1092|consen 314 SIDMSLLPAENAEDIEADAYWCLSKLLDGIQDNYTFA-QPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMN 392 (484)
T ss_pred ccchhhccHHHHhhhhhhHHHHHHHHHHHhhhhhhhc-ChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHH
Confidence 38999999999999999999876 679999999999999999999999999999999999999999
Q ss_pred HhhccCCChhHHHHHhhHHHHhccchhHHHHHHHHHHHHHHHHhhcch--hhhhhhhhccCCCCCCCCCCCCCCCCcccc
Q 047609 530 VLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRES--VVIREGSTENSGGDLKGGLQPKNGNIECSV 607 (696)
Q Consensus 530 tLFsreLp~e~vlRLWDv~faeG~~~~~~~~L~yvclA~Lll~~~~~L--~d~~E~m~~Lq~~p~~~~~k~~~~d~e~ll 607 (696)
+||.|+||+..++||||.|++++ ..|..|+.|||+| +++.+++.| .||++.|+|||++|+ ..|.+.+++.++
T Consensus 393 cLLmRE~pl~~~iRlWDTY~aE~--dgf~~FhvYvcAA-FL~kW~~eL~e~DFQ~~ilfLQnlPT---~~W~d~eIellL 466 (484)
T KOG1092|consen 393 CLLMREFPLRCTIRLWDTYLAEP--DGFNEFHVYVCAA-FLLKWSSELMENDFQELILFLQNLPT---HNWSDREIELLL 466 (484)
T ss_pred HHHHhhccchhHHHHHHHhhcCc--cchHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHhcCCC---CCccHHHHHHHH
Confidence 99999999999999999999996 6688899999955 666777777 899999999999994 899999999999
Q ss_pred cccccccccccc
Q 047609 608 SADDGIKSASAH 619 (696)
Q Consensus 608 a~~~~mK~~~~~ 619 (696)
|++|.+|++++.
T Consensus 467 seA~~~k~~f~d 478 (484)
T KOG1092|consen 467 SEAFRLKSVFSD 478 (484)
T ss_pred HHHHHHHHHHcc
Confidence 999999999654
No 4
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=300.16 Aligned_cols=160 Identities=25% Similarity=0.476 Sum_probs=149.2
Q ss_pred HHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhh----------chhhHHHHHHHHHHhhhcccCC---CChHHHHHHHH
Q 047609 430 RMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFE----------DNADAFWCFEMLLRRMRNNFQM---EGPTGVMKQLE 496 (696)
Q Consensus 430 ~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~----------dE~dAFw~F~~LM~rir~~f~~---~~~~gi~~~l~ 496 (696)
...|||..||+.||+|||+||||.|+|||++|+. .|+|||.||..||..++++|.. ++..|+...+.
T Consensus 173 ~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Ms 252 (370)
T KOG4567|consen 173 AAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMS 252 (370)
T ss_pred HHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 3589999999999999999999999999999993 4899999999999999999864 22347777799
Q ss_pred HHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHhhHHHHhccchhHHHHHHHHHHHHHHHHhhcc
Q 047609 497 ELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRE 576 (696)
Q Consensus 497 vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLWDv~faeG~~~~~~~~L~yvclA~Lll~~~~~ 576 (696)
.+..+|+++|-+||.||+..+|.|.+|++||+++|++.+||+++++||||.+|++ +.-+.+|+++|||||++.+..+
T Consensus 253 r~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD---~~rfd~Ll~iCcsmlil~Re~i 329 (370)
T KOG4567|consen 253 RLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD---PQRFDFLLYICCSMLILVRERI 329 (370)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC---hhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 5668999999999999999999
Q ss_pred h-hhhhhhhhccCCCCC
Q 047609 577 S-VVIREGSTENSGGDL 592 (696)
Q Consensus 577 L-~d~~E~m~~Lq~~p~ 592 (696)
| .+|.-.|..||+-|.
T Consensus 330 l~~DF~~nmkLLQ~yp~ 346 (370)
T KOG4567|consen 330 LEGDFTVNMKLLQNYPT 346 (370)
T ss_pred HhcchHHHHHHHhcCCC
Confidence 9 899999999999996
No 5
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=5.7e-34 Score=280.49 Aligned_cols=143 Identities=30% Similarity=0.607 Sum_probs=133.0
Q ss_pred cCCCCCCCCCCCCCCcchhhhhhhhccccC--chhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhchhhHHHHH
Q 047609 395 DAPDVPLNTTTSPGEAVNEERIVILNSMRM--TKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCF 472 (696)
Q Consensus 395 DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~--~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE~dAFw~F 472 (696)
||+||||+ +.+|+. ..+++.|+|||.+|+.+||++|||||||+||++||+++.+|++|||||
T Consensus 53 Dv~Rt~~~----------------~~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~ 116 (199)
T smart00164 53 DLRRTFPE----------------HSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCL 116 (199)
T ss_pred ccCCCCCC----------------chhhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999998 455653 569999999999999999999999999999999999988899999999
Q ss_pred HHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhh-cCCCcchhhHHHHHHhhccCCChhHHHHHhhHHHHh
Q 047609 473 EMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSN-IGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAA 551 (696)
Q Consensus 473 ~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~-~gI~~~lFa~rWfltLFsreLp~e~vlRLWDv~fae 551 (696)
.++|+++.+.|+.++..++...+..+..+|+..+|+||+||++ +++.+.+|+++||++||++++|++.++||||+||++
T Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~e 196 (199)
T smart00164 117 VKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAE 196 (199)
T ss_pred HHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Confidence 9999998877766777789999999999999999999999996 999999999999999999999999999999999999
Q ss_pred cc
Q 047609 552 DY 553 (696)
Q Consensus 552 G~ 553 (696)
|.
T Consensus 197 G~ 198 (199)
T smart00164 197 GS 198 (199)
T ss_pred CC
Confidence 84
No 6
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-33 Score=304.26 Aligned_cols=200 Identities=19% Similarity=0.276 Sum_probs=168.8
Q ss_pred CCCccccccCCccchHHHhhhhccccCCCCCCCCCCCCCCcchhhhhhhhcccc--CchhHHHHHHHHHHhhhcCCCCcc
Q 047609 370 GSHEPELWSNSQDFKTEITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMR--MTKNLARMSDILAVYAWVDPATGY 447 (696)
Q Consensus 370 ~~~~~~~~s~~~~~~~eild~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~--~~~~~~~L~rIL~aYA~~nPdIGY 447 (696)
+.+++.+......-...+.++|+. |++||||+|. ++|. ++.++++|+|||.|||++||.|||
T Consensus 179 ~~~yq~ll~~~~~~~~~~~~qI~~-DL~RTfP~n~---------------~~~~~~~~~~~~~LrRvL~Aya~hNp~vGY 242 (436)
T KOG2058|consen 179 PGYYQELLRKGDEKKSPVVKQIKL-DLPRTFPDNF---------------KGFDSEDSDGRQTLRRVLLAYARHNPSVGY 242 (436)
T ss_pred chhHHHHHhcCCCccchHHHHHHh-ccccccCCCc---------------ccCCCCCchHHHHHHHHHHHHHhhCCCCcc
Confidence 344554444333333368999999 9999999971 3343 355689999999999999999999
Q ss_pred cCChhHHHHHHHHhhhchhhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHH
Q 047609 448 CQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRM 527 (696)
Q Consensus 448 cQGMNdIaapLLlv~~dE~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rW 527 (696)
|||||+|||++|+++..|++|||||..+++++.+.|+.+++.|.+....+|..+|+..+|+|+.||..++++..++++.|
T Consensus 243 CQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~w 322 (436)
T KOG2058|consen 243 CQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPW 322 (436)
T ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhh
Confidence 99999999999999988999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCChhHHHHHhhHHHHhccchhHHHHHHHHHHHHHHHHhhcch--hhhhhhhhccCCC
Q 047609 528 LLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRES--VVIREGSTENSGG 590 (696)
Q Consensus 528 fltLFsreLp~e~vlRLWDv~faeG~~~~~~~~L~yvclA~Lll~~~~~L--~d~~E~m~~Lq~~ 590 (696)
|+++|...+|.++++||||++|++|.. +++.+++|++.......| ....+++..++..
T Consensus 323 fLt~f~d~lP~~t~LrIwD~~f~eGsk-----vlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~ 382 (436)
T KOG2058|consen 323 FLTLFVDILPSETVLRIWDCLFYEGSK-----VLFRVALAILKKHEEEILKEDSSKEILRVLPDL 382 (436)
T ss_pred hHHHhcccccHHHHHHHHHHHHhcccH-----HHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999854 566677888887777777 3444555554433
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=285.43 Aligned_cols=167 Identities=26% Similarity=0.485 Sum_probs=141.9
Q ss_pred hhhccccCCCCCCCCCCCCCCcchhhhhhhhccccCc--hhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhchh
Q 047609 389 DRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMT--KNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNA 466 (696)
Q Consensus 389 d~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~~--~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE~ 466 (696)
++|.. ||+||||.+. .|++. .....|+|||.+|+++||++|||||||+||++||+++..|+
T Consensus 258 ~~i~~-Dl~rt~~~~~----------------~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee 320 (496)
T COG5210 258 SQIEK-DLSRTFPDNS----------------LFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEE 320 (496)
T ss_pred HHHHc-cccccccccc----------------cccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhH
Confidence 34444 9999999853 33332 33345999999999999999999999999999999998899
Q ss_pred hHHHHHHHHHH-hhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHh
Q 047609 467 DAFWCFEMLLR-RMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMW 545 (696)
Q Consensus 467 dAFw~F~~LM~-rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLW 545 (696)
+|||||++||+ ...+.++..++.|+..++..+..+++..+|+||+||...++...+|+++||+++|.+++|++.++|||
T Consensus 321 ~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriw 400 (496)
T COG5210 321 QAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIW 400 (496)
T ss_pred HHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999 44566667779999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhccchhHHHHHHHHHHHHHHHHhhcch
Q 047609 546 EMMWAADYDEASASTLEEKCLEQLVVQLSRES 577 (696)
Q Consensus 546 Dv~faeG~~~~~~~~L~yvclA~Lll~~~~~L 577 (696)
|++|++|.. +++.+.+|.+.....+.+
T Consensus 401 D~lf~eg~~-----~l~~~~~~~l~~~~~~l~ 427 (496)
T COG5210 401 DCLFLEGSS-----MLFQLALAILKLLRDKLL 427 (496)
T ss_pred HHHHHhccH-----HHHHHHHHHHHhhhhhhh
Confidence 999999853 344455566666566655
No 8
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.95 E-value=1.7e-27 Score=234.89 Aligned_cols=168 Identities=30% Similarity=0.551 Sum_probs=140.7
Q ss_pred HHhhhhccccCCCCCCCCCCCCCCcchhhhhhhhccccCchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhch
Q 047609 386 EITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDN 465 (696)
Q Consensus 386 eild~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE 465 (696)
+..++|.. ||+||++. ...+....++..|.+||.+|+.++|++||||||++|++++++++.+|
T Consensus 45 ~~~~~I~~-Dv~rt~~~----------------~~~~~~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e 107 (214)
T PF00566_consen 45 KIFEQIDK-DVNRTFPN----------------SFLFKNEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDE 107 (214)
T ss_dssp TCHHHHHH-HHCTSSTS----------------CCCSTTHHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHH
T ss_pred hHHHHHHH-hhhhhccc----------------chhhhhcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccc
Confidence 34567775 99999984 23455778999999999999999999999999999999999899999
Q ss_pred hhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHh
Q 047609 466 ADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMW 545 (696)
Q Consensus 466 ~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLW 545 (696)
++|||||..+|+.....|+.++..++...+..+..+++.++|+||+||++.++++..|+++|++++|++.+|.+.++|||
T Consensus 108 ~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lw 187 (214)
T PF00566_consen 108 EEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLW 187 (214)
T ss_dssp HHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHH
T ss_pred cchhccccchhcccccccccccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHH
Confidence 99999999999544445556667789999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhccchhHHHHHHHHHHHHHHHHhhc
Q 047609 546 EMMWAADYDEASASTLEEKCLEQLVVQLSR 575 (696)
Q Consensus 546 Dv~faeG~~~~~~~~L~yvclA~Lll~~~~ 575 (696)
| ++.+|+. .+++++|+|++.....+
T Consensus 188 D-~l~~g~~----~~l~~~~lail~~~~~~ 212 (214)
T PF00566_consen 188 D-FLLEGYK----FFLFFIALAILKYLRDQ 212 (214)
T ss_dssp H-HHHHCTT----HHHHHHHHHHHHHTHHH
T ss_pred H-HHHcCCC----cHHHHHHHHHHHHHHHH
Confidence 9 6667652 22667888877654443
No 9
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.92 E-value=2.9e-25 Score=237.82 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=166.4
Q ss_pred CccchHHH-hhhhccccCCCCCCCCCCCCCCcchhhhhhhhccc-cCchhHHHHHHHHHHhhhcCCCCcccCChhHHHHH
Q 047609 380 SQDFKTEI-TDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSM-RMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSP 457 (696)
Q Consensus 380 ~~~~~~ei-ld~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF-~~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaap 457 (696)
++.-++|. +.+|++ |+.||||. +..| ++++..+.|..||.||+.|.|+|||+|||.+|+|+
T Consensus 347 ~sa~~re~sv~~i~L-DisrTfps----------------l~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAv 409 (586)
T KOG2223|consen 347 NSAADREASVELIKL-DISRTFPS----------------LSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAV 409 (586)
T ss_pred cchhhhhcchhheee-chhccCcc----------------eeeeccCCchHHHHHHHhhhheeecCccccccchHHHHHH
Confidence 34556677 999999 99999998 3444 56889999999999999999999999999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHhhh-cccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCC
Q 047609 458 FVVLFEDNADAFWCFEMLLRRMR-NNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRREL 536 (696)
Q Consensus 458 LLlv~~dE~dAFw~F~~LM~rir-~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreL 536 (696)
||+. .++++||.||.+|+++-. ..|+.-+...+...+..|...+++..|+|+.||.++.+.|.+|++.|+.+||+..+
T Consensus 410 Llln-md~~~AFiafANLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlysksl 488 (586)
T KOG2223|consen 410 LLLN-MDLADAFIAFANLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSL 488 (586)
T ss_pred HHHc-CCcHHHHHHHHHHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccC
Confidence 8666 578999999999999843 34444445567788999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhhHHHHhccchhHHHHHHHHHHHHHHHHhhcch-hhhhhhhhccCCCCC
Q 047609 537 SFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRES-VVIREGSTENSGGDL 592 (696)
Q Consensus 537 p~e~vlRLWDv~faeG~~~~~~~~L~yvclA~Lll~~~~~L-~d~~E~m~~Lq~~p~ 592 (696)
|++.++||||+|+-+|. .|++...+++|.+..+.+| .||..+..||-.+|.
T Consensus 489 pldlacRIwDvy~rdge-----eFlfr~~lgIlklyepkLl~mDf~~~~qfLtklp~ 540 (586)
T KOG2223|consen 489 PLDLACRIWDVYCRDGE-----EFLFRTALGILKLYEPKLLVMDFIHVAQFLTKLPE 540 (586)
T ss_pred ChHHhhhhhheeeecch-----HHHHHHHHHHHHHccchHhhhhHHHHHHHHHhCcc
Confidence 99999999999999974 3667788888888888888 899999999999983
No 10
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.83 E-value=1.1e-20 Score=204.10 Aligned_cols=177 Identities=16% Similarity=0.281 Sum_probs=145.4
Q ss_pred cCCCCCCCCCCCCCCcchhhhhhhhcccc-CchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhchhhHHHHHH
Q 047609 395 DAPDVPLNTTTSPGEAVNEERIVILNSMR-MTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFE 473 (696)
Q Consensus 395 DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~-~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE~dAFw~F~ 473 (696)
|+-|+.|+| .+|.+ ++.+..+|+|||.+.|+..|++||||||.-|+|.||+. ..|+.|||++.
T Consensus 218 dllr~lpnn---------------~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf-~~ee~afwmma 281 (848)
T KOG2222|consen 218 DLLRILPNN---------------ACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLF-CEEENAFWMMA 281 (848)
T ss_pred HHHHhCCCc---------------ceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHH-hcchhHHHHHH
Confidence 667788886 35554 67899999999999999999999999999999998665 45889999999
Q ss_pred HHHHhhh-cccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHhhHHHHhc
Q 047609 474 MLLRRMR-NNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAAD 552 (696)
Q Consensus 474 ~LM~rir-~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLWDv~faeG 552 (696)
.+++.+. .+||...+-|++..-.+...|+..+.|.|-+.|+.+.++..+....||+|||...+.....+||||.||.+|
T Consensus 282 aiiedilp~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g 361 (848)
T KOG2222|consen 282 AIIEDILPANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEG 361 (848)
T ss_pred HHHHHhcCchhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecC
Confidence 9999865 578888788999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cchhHHHHHHHHHHHHHHHHhhcchhhh-------hhhhhccCCCCCC
Q 047609 553 YDEASASTLEEKCLEQLVVQLSRESVVI-------REGSTENSGGDLK 593 (696)
Q Consensus 553 ~~~~~~~~L~yvclA~Lll~~~~~L~d~-------~E~m~~Lq~~p~~ 593 (696)
.. . ++.+.+.||.+.. +.+.+. .++..-|+.+|..
T Consensus 362 ~i-~----ifql~i~ilkmke-qdi~~iaettensa~if~als~ip~~ 403 (848)
T KOG2222|consen 362 GI-N----IFQLIIGILKMKE-QDIKEIAETTENSADIFNALSDIPAE 403 (848)
T ss_pred cc-h----hHHHHHHHHHhhH-HHHHHHHHhcccHHHHHHHHHhCCch
Confidence 52 2 2334455555433 223222 3456667777753
No 11
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.4e-20 Score=207.76 Aligned_cols=188 Identities=20% Similarity=0.262 Sum_probs=149.6
Q ss_pred HHhhhhccccCCCCCCCCCCCCCCcchhhhhhhhccccCchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhc-
Q 047609 386 EITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFED- 464 (696)
Q Consensus 386 eild~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~d- 464 (696)
|..+.|.. ||.||||.+ -.||+....+..|++||..||..||.+||-|||++|.||+++|+..
T Consensus 103 EL~~~i~q-DvsRtfPe~---------------~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D 166 (625)
T KOG1091|consen 103 ELEKTIDQ-DVSRTFPEH---------------SLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVD 166 (625)
T ss_pred HHHHhhcc-hhhccCcch---------------hhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehh
Confidence 44666666 999999983 3899999999999999999999999999999999999999998731
Q ss_pred -----------------------------hhhHH--HHHHHHHHhhhcc------------------cC-----CCChHH
Q 047609 465 -----------------------------NADAF--WCFEMLLRRMRNN------------------FQ-----MEGPTG 490 (696)
Q Consensus 465 -----------------------------E~dAF--w~F~~LM~rir~~------------------f~-----~~~~~g 490 (696)
+.+++ -+|+.+|..-... |. ..+.+.
T Consensus 167 ~q~l~h~se~~~~~l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~ 246 (625)
T KOG1091|consen 167 NQALLHVSESLFDKLGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPP 246 (625)
T ss_pred HHHHHHHHHhhhhhcCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchh
Confidence 22333 3555555321111 11 122345
Q ss_pred HHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHhh-HHHHhccchhHHHHHHHHHHHHH
Q 047609 491 VMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWE-MMWAADYDEASASTLEEKCLEQL 569 (696)
Q Consensus 491 i~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLWD-v~faeG~~~~~~~~L~yvclA~L 569 (696)
+......+..+|...|+.||.||.+++|.|.+|..||+.+||.|+||+.+++.||| +++++.+ ...++.++.++||
T Consensus 247 v~e~~~~~~~lL~~~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~p---r~~Lv~~m~VsmL 323 (625)
T KOG1091|consen 247 VFEANFAQYHLLAKVDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSP---RGILVACMFVSML 323 (625)
T ss_pred HHHHhhhhhhhhhhccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCc---hHHHHHHHHHHHH
Confidence 66677788999999999999999999999999999999999999999999999999 7777743 3456678889999
Q ss_pred HHHhhcch-hhhhhhhhccCCCCC
Q 047609 570 VVQLSRES-VVIREGSTENSGGDL 592 (696)
Q Consensus 570 ll~~~~~L-~d~~E~m~~Lq~~p~ 592 (696)
+..+..+| .+.+.++..|.+.|.
T Consensus 324 L~IRd~Llss~~~tcL~~Lm~yP~ 347 (625)
T KOG1091|consen 324 LYIRDSLLSSEYQTCLQYLMNYPE 347 (625)
T ss_pred HHHHHHHHHhcchhHHHHHhcCCC
Confidence 99888888 677777777766663
No 12
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.78 E-value=3.1e-19 Score=199.97 Aligned_cols=196 Identities=17% Similarity=0.239 Sum_probs=167.7
Q ss_pred CCccccccCCccchHHHhhhhccccCCCCCCCCCCCCCCcchhhhhhhhccccCchhHHHHHHHHHHhhhcCCCCcccCC
Q 047609 371 SHEPELWSNSQDFKTEITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQG 450 (696)
Q Consensus 371 ~~~~~~~s~~~~~~~eild~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~~~~~~~L~rIL~aYA~~nPdIGYcQG 450 (696)
.++..+....++-.....+.|.- |++|.-|. ++-|+.+++...|+|||.|||+.||+|||||-
T Consensus 227 Geygkll~~~~G~~~~a~eEIE~-Dl~rsLpE----------------hpA~Q~e~gi~aLR~vL~Aya~~Np~vGYcQa 289 (671)
T KOG4347|consen 227 GEYGKLLHSVTGKRSVATEEIEP-DLGRSLPE----------------HPAFQSEPGIAALRRVLTAYAWSNPEVGYCQA 289 (671)
T ss_pred HHhhhhhhcccCCcccccccccC-CCCCCCCc----------------chhhhCCCchhhHHHHHHhhhccCCchhHHHH
Confidence 34444444444433344677776 99998887 56688899999999999999999999999999
Q ss_pred hhHHHHHHHHhhhchhhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHH
Q 047609 451 MSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLV 530 (696)
Q Consensus 451 MNdIaapLLlv~~dE~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWflt 530 (696)
||-+++.+++. ..|+.|||+++.+.+.+.+.|+.....|......+++.+++...|.||+|+..++ ...+....||++
T Consensus 290 MNIV~s~lll~-~~EEeafwll~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFls 367 (671)
T KOG4347|consen 290 MNIVGSELLLF-CKEEEAFWLLSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLS 367 (671)
T ss_pred HHHHHHhhhhh-hccchHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHH
Confidence 99998888555 5689999999999999999998888889998999999999999999999999999 666788899999
Q ss_pred hhccCCChhHHHHHhhHHHHhccchhHHHHHHHHHHHHHHHHhhcch--hhhhhhhhccCCC
Q 047609 531 LFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRES--VVIREGSTENSGG 590 (696)
Q Consensus 531 LFsreLp~e~vlRLWDv~faeG~~~~~~~~L~yvclA~Lll~~~~~L--~d~~E~m~~Lq~~ 590 (696)
||....|++..+||-|+||.+|. ..++.+.+|++.....+++ .+..|.|..+++-
T Consensus 368 lFls~m~le~a~~ilD~FF~eG~-----rvlFqiaLail~~N~~~il~~~dDge~~~vl~~y 424 (671)
T KOG4347|consen 368 LFLSLMPLEYAVRILDCFFYEGP-----RVLFQIALAILKQNAERILSATDDGEAMMVLGNY 424 (671)
T ss_pred HHHHHcchHHHHHHHhhhhhccc-----HHHHHHHHHHHHhhHHHhcccCCchHHHHHHHHH
Confidence 99999999999999999999984 4677899999999988888 6888888887754
No 13
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.76 E-value=2.6e-18 Score=195.14 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=158.4
Q ss_pred hhhhccccCCCCCCCCCCCCCCcchhhhhhhhccccC--chhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhch
Q 047609 388 TDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRM--TKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDN 465 (696)
Q Consensus 388 ld~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~--~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE 465 (696)
..+|.+ |+-||||+ |+||+. +.++..|.|+|.||+..||++|||||..++|++||+. .+|
T Consensus 622 qhAi~i-dlgrtfp~----------------h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh-~~e 683 (948)
T KOG4436|consen 622 QHAILI-DLGRTFPT----------------HPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLH-MSE 683 (948)
T ss_pred HHHHHH-hhccccCC----------------CHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhh-cch
Confidence 566777 99999998 678875 7899999999999999999999999999999998776 579
Q ss_pred hhHHHHHHHHHHh--hhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHH
Q 047609 466 ADAFWCFEMLLRR--MRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALC 543 (696)
Q Consensus 466 ~dAFw~F~~LM~r--ir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlR 543 (696)
+.||-++..||-. ++..| .+++..++.+++.+..+++.+.+.||+||+++.|.|.+|+..||+++|+..||+..+.|
T Consensus 684 ~~afellk~LM~~r~~r~qy-~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvar 762 (948)
T KOG4436|consen 684 ENAFELLKFLMFDRGMRKQY-RPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVAR 762 (948)
T ss_pred hhHHHHHHHHHHHHhhHhhh-chHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHH
Confidence 9999999999965 45566 45577888889999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhccchhHHHHHHHHHHHHHHHHhhcch--hhhhhhhhccCCCCCCCCCCCCCCCCccccccccccc
Q 047609 544 MWEMMWAADYDEASASTLEEKCLEQLVVQLSRES--VVIREGSTENSGGDLKGGLQPKNGNIECSVSADDGIK 614 (696)
Q Consensus 544 LWDv~faeG~~~~~~~~L~yvclA~Lll~~~~~L--~d~~E~m~~Lq~~p~~~~~k~~~~d~e~lla~~~~mK 614 (696)
|+|++|..|.. .++.+.++.|.++..-++ .-|.+++.++++.- ++.++...+-.+.--|.|.
T Consensus 763 vfd~~flq~te-----vifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~----p~~~~~emeki~~qvf~mD 826 (948)
T KOG4436|consen 763 VFDLIFLQGTE-----VIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTL----PKMEHTEMEKIIKQVFEMD 826 (948)
T ss_pred HHHHHHhhccc-----hhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhh----hhhhHHHHHHHHHHHHhhh
Confidence 99999999753 333455555555444444 45667777777553 3444444433333333333
No 14
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.74 E-value=9.9e-18 Score=185.42 Aligned_cols=165 Identities=19% Similarity=0.269 Sum_probs=150.5
Q ss_pred cCchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhh-hchhhHHHHHHHHHHhhhcccCCC-ChHHHHHHHHHHHH
Q 047609 423 RMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLF-EDNADAFWCFEMLLRRMRNNFQME-GPTGVMKQLEELWH 500 (696)
Q Consensus 423 ~~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~-~dE~dAFw~F~~LM~rir~~f~~~-~~~gi~~~l~vL~~ 500 (696)
..+.++++|+|+|.||+..+|..-|.||..-+|+||++++ .+|+-||-|+..++-++.++|+.. +..-+...+.+|.+
T Consensus 409 sSp~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~fflkdns~vikeyLs~f~~ 488 (725)
T KOG1093|consen 409 SSPKGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHFFLKDNSNVIKEYLSMFSQ 488 (725)
T ss_pred CCHHHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 3578999999999999999999999999999999998886 578999999999999988777665 56677888999999
Q ss_pred HHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHhhHHHHhccchhHHHHHHHHHHHHHHHHhhcch-hh
Q 047609 501 ILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRES-VV 579 (696)
Q Consensus 501 LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLWDv~faeG~~~~~~~~L~yvclA~Lll~~~~~L-~d 579 (696)
++..+||+|++||..+|+.+.+|+..||+|+|+.+||.+..+.+||.++..+.+ |.+.+.+|++...+.++| +-
T Consensus 489 l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~S-----Fplmi~vAil~~lR~~LLa~n 563 (725)
T KOG1093|consen 489 LLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSS-----FPLMIGVAILIQLRDPLLACN 563 (725)
T ss_pred HHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCc-----cHHHHHHHHHHHhhhhhhhCC
Confidence 999999999999999999999999999999999999999999999999998754 556688999999999999 89
Q ss_pred hhhhhhccCCCCC
Q 047609 580 IREGSTENSGGDL 592 (696)
Q Consensus 580 ~~E~m~~Lq~~p~ 592 (696)
|.|...+....|.
T Consensus 564 fne~illf~d~pd 576 (725)
T KOG1093|consen 564 FNECILLFSDLPD 576 (725)
T ss_pred chhheeeeccCCc
Confidence 9999999998884
No 15
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.71 E-value=8.1e-18 Score=184.95 Aligned_cols=175 Identities=20% Similarity=0.304 Sum_probs=151.2
Q ss_pred ccCCCCCCCCCCCCCCcchhhhhhhhcccc--CchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhchhhHHHH
Q 047609 394 SDAPDVPLNTTTSPGEAVNEERIVILNSMR--MTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWC 471 (696)
Q Consensus 394 ~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~--~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE~dAFw~ 471 (696)
.|++||||.+ ..|+ .+..++.|.+||.+|+.++|++||||||..+++++++++. |++|||+
T Consensus 190 ~d~~Rt~~~~----------------~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~ 252 (397)
T KOG1102|consen 190 RDLSRTFPAH----------------LLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPL 252 (397)
T ss_pred hhccCcCcch----------------hhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-hhhhhhh
Confidence 4899999984 2333 4788899999999999999999999999999999988866 9999999
Q ss_pred HHHHHHhh-hcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHhhHHHH
Q 047609 472 FEMLLRRM-RNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWA 550 (696)
Q Consensus 472 F~~LM~ri-r~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLWDv~fa 550 (696)
++.+|... ++.| ..+..++...+..+..+++...|.++.|+.+.++...+|+.+|++|+|+..+|++.++|+||+++.
T Consensus 253 lv~l~~~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~ 331 (397)
T KOG1102|consen 253 LVKLMKNYGLDLL-SPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFV 331 (397)
T ss_pred hhhhhhccchhcc-cccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHH
Confidence 99999864 4455 667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhcch-hhhhhhhhccCCCC
Q 047609 551 ADYDEASASTLEEKCLEQLVVQLSRES-VVIREGSTENSGGD 591 (696)
Q Consensus 551 eG~~~~~~~~L~yvclA~Lll~~~~~L-~d~~E~m~~Lq~~p 591 (696)
+| ...+..+.++++.......+ .++...+.++++-+
T Consensus 332 ~g-----~~i~~~~~~~l~~~~~~~~~~~~~e~~~~~l~~~~ 368 (397)
T KOG1102|consen 332 EG-----VSILFRFSLALLKHKADDLLDLDFESLLSYLRVDL 368 (397)
T ss_pred hc-----hHHHHHHHHHHhhhhhHHHhhccHHHHHHHHhccc
Confidence 98 33445566677776666666 67888888888665
No 16
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.66 E-value=6.5e-16 Score=162.99 Aligned_cols=124 Identities=19% Similarity=0.326 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhchhhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHH
Q 047609 426 KNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELT 505 (696)
Q Consensus 426 ~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~ 505 (696)
..+..|..++......+|.+.|-||+||||..||+++. |.+|+-++..|-......|..+.+.+..+++..+..+|+..
T Consensus 122 ~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-E~~Al~l~E~L~~~~lrdfM~~Tld~t~~qL~~i~~iIk~~ 200 (395)
T KOG2595|consen 122 QLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-ELEALSLMEELSTLHLRDFMLPTLDFTVRQLRLISPIIKEV 200 (395)
T ss_pred HHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55677777777777788999999999999999999976 88999998888866555666777889999999999999999
Q ss_pred cHHHHHHhhhcCCCcchhhHHHHHHhhccCC-ChhHHHHHhhHHHHh
Q 047609 506 DREMYKHLSNIGAESLHFAFRMLLVLFRREL-SFNEALCMWEMMWAA 551 (696)
Q Consensus 506 DPeLy~HL~~~gI~~~lFa~rWfltLFsreL-p~e~vlRLWDv~fae 551 (696)
+|+||+.|+...+.+ +|+..|++|+|++.+ ++..++|++|+|++.
T Consensus 201 nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas 246 (395)
T KOG2595|consen 201 NPELYQFLQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLAS 246 (395)
T ss_pred ChHHHHHHHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 999999999888886 589999999999999 789999999999987
No 17
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=4.8e-13 Score=134.57 Aligned_cols=123 Identities=17% Similarity=0.316 Sum_probs=109.6
Q ss_pred hhhhccccCCCCCCCCCCCCCCcchhhhhhhhcccc--CchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhch
Q 047609 388 TDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMR--MTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDN 465 (696)
Q Consensus 388 ld~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~--~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE 465 (696)
.+.|.- |++|-||.+ ..|- ...+++.|+|+|.+|..++|+.||||+-.-|++++|+. ..+
T Consensus 143 ~e~i~k-dl~rqfp~h----------------emf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmh-mp~ 204 (267)
T KOG2221|consen 143 AEGIHK-DLHRQFPFH----------------EMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMH-MPA 204 (267)
T ss_pred hhhhcc-ccccCCCcc----------------cccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhc-ccH
Confidence 345554 999999985 3332 35678999999999999999999999999999988666 568
Q ss_pred hhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHH
Q 047609 466 ADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRML 528 (696)
Q Consensus 466 ~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWf 528 (696)
.+|||||+.+.+++.+.|+.+++..++..-.+|..|+++.+|..|.||...++++.+|...||
T Consensus 205 rdaf~~~vqicekylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 205 RDAFWCFVQICEKYLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHHHHHHHcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 899999999999999999899899999999999999999999999999999999999999997
No 18
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.20 E-value=8.4e-11 Score=127.89 Aligned_cols=122 Identities=16% Similarity=0.261 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHhhhcCCCCcccC--ChhHHHHHHHHhhhchhhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHH
Q 047609 426 KNLARMSDILAVYAWVDPATGYCQ--GMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILE 503 (696)
Q Consensus 426 ~~~~~L~rIL~aYA~~nPdIGYcQ--GMNdIaapLLlv~~dE~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk 503 (696)
+....|..++..||+. .++.|.. |.-.|+-||+++-.+..+.|-||..++.++.+.= ...-...+..|+-||+
T Consensus 90 ~vv~dlES~iTfYCK~-Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkd----crpkg~~Fh~FRLLlq 164 (669)
T KOG3636|consen 90 PVVSDLESFITFYCKK-RNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKD----CRPKGQIFHLFRLLLQ 164 (669)
T ss_pred chhHhhhhHhhhhhhc-cCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCC----CCCCCccchHHHHHHH
Confidence 4456788999999975 2455543 5668888998888899999999999998854432 2222334677889999
Q ss_pred HHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHhhHHHHhc
Q 047609 504 LTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAAD 552 (696)
Q Consensus 504 ~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLWDv~faeG 552 (696)
.+||+|..||....+.|.+|+..||-+||+...+.+.+..+||.|+..+
T Consensus 165 YHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa 213 (669)
T KOG3636|consen 165 YHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA 213 (669)
T ss_pred hcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999875
No 19
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=98.81 E-value=1.9e-10 Score=126.17 Aligned_cols=125 Identities=34% Similarity=0.619 Sum_probs=92.9
Q ss_pred hccccCchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhchhhHHHHHHHHHHhhhcccCCCChHHHHHHHHHH
Q 047609 419 LNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEEL 498 (696)
Q Consensus 419 l~FF~~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL 498 (696)
+-||.++.+.+. +++...|...+-+=||+|||.|+.+|++..+++|+-..-||.-+|-+-+..|-. ..|+-+.+-.+
T Consensus 621 ~~~fs~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~~~q--~~~~~~~l~~~ 697 (813)
T KOG1648|consen 621 LMFFSNKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGKFPQ--RPGMSKCLLNL 697 (813)
T ss_pred heeecCCcchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhcccCCC--CCCcccccccc
Confidence 556666667766 678888888888999999999999999999999888888988888776666532 23444443333
Q ss_pred HHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHhhHHHHhc
Q 047609 499 WHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAAD 552 (696)
Q Consensus 499 ~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLWDv~faeG 552 (696)
. +++..+|-.. -+.. ..-..|+||..-|.++++.+....+|.++|+..
T Consensus 698 r-~~~v~~~l~s-~id~----~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~ 745 (813)
T KOG1648|consen 698 R-LIQVVDPLIS-DIDY----AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQ 745 (813)
T ss_pred c-chhhhcchhc-chhh----hhhcceeeeccCcccccCCCCcceeeEeecccc
Confidence 3 6667777221 1111 122448999999999999999999999999884
No 20
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=98.74 E-value=1.3e-08 Score=117.45 Aligned_cols=149 Identities=10% Similarity=0.020 Sum_probs=126.3
Q ss_pred hhhhccccCCCCCCCCCCCCCCcchhhhhhhhccccC-ch--------hHHHHHHHHHHhhhcCCCCcccCChhHHHHHH
Q 047609 388 TDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRM-TK--------NLARMSDILAVYAWVDPATGYCQGMSDLLSPF 458 (696)
Q Consensus 388 ld~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~-~~--------~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapL 458 (696)
.--|+- |++||+|. |+||+. .. .++.|+|+..+|...+-++|||||-+++++.+
T Consensus 228 ~~~Irr-di~~~~~e----------------h~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll 290 (948)
T KOG4436|consen 228 IGIIRR-DIERTYPE----------------HYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLL 290 (948)
T ss_pred HHHHHH-HhhccCcc----------------eeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHH
Confidence 445665 89999998 566654 23 48999999999999999999999999999987
Q ss_pred HHhhhchhhHHHHHHHHHHhhh--cccCCCChHHHHHHHHHHHHHHHHHcH-HHHHHhhhcCCCcchhhHHHHHHhhccC
Q 047609 459 VVLFEDNADAFWCFEMLLRRMR--NNFQMEGPTGVMKQLEELWHILELTDR-EMYKHLSNIGAESLHFAFRMLLVLFRRE 535 (696)
Q Consensus 459 Llv~~dE~dAFw~F~~LM~rir--~~f~~~~~~gi~~~l~vL~~LLk~~DP-eLy~HL~~~gI~~~lFa~rWfltLFsre 535 (696)
++. .+++.+|-+++.+|...+ ..+ .+.+..+...+..+....+...| .|+.|+.+.+.+..++...||++.|...
T Consensus 291 ~l~-~~~E~assv~~~lm~~~rl~~l~-kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt 368 (948)
T KOG4436|consen 291 LLQ-MPVEEASSVKVQLMILYRLRELS-KPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTT 368 (948)
T ss_pred Hhc-CcHHHHHHHHHHHHHhhcccccC-CcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhccc
Confidence 655 678899999999998754 344 44455666677778888999999 9999999999999999999999999999
Q ss_pred CChhHHHHHhhHHHHhccch
Q 047609 536 LSFNEALCMWEMMWAADYDE 555 (696)
Q Consensus 536 Lp~e~vlRLWDv~faeG~~~ 555 (696)
+|+...-|+.|.|.++|...
T Consensus 369 ~Pi~~a~r~~~~f~~egllk 388 (948)
T KOG4436|consen 369 FPIFMAARISDTFSSEGLLK 388 (948)
T ss_pred CchhhccccccccccccHHH
Confidence 99999999999999998543
No 21
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=1.4e-06 Score=98.89 Aligned_cols=82 Identities=27% Similarity=0.342 Sum_probs=76.0
Q ss_pred CCCHHHHhhhhCCCCCccCHHHHHHHHHhCCCCCCchhhhHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047609 94 ILKPEKWQACFDSDGKVSGFHKALKLIVLGGVDPSIRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVMHS 173 (696)
Q Consensus 94 ~Ls~~~W~~~fd~~Grl~~~~~~~k~I~~GGvdpsiR~EVWpFLLG~Y~~~ST~eER~~l~~~~r~eY~~lk~q~~~~~~ 173 (696)
.++.++|......+|++......+.+||+||+-+++|++||||++++|+|++|..||..++.. ..+|..++.||....+
T Consensus 147 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~~~~~ 225 (488)
T KOG2197|consen 147 SLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWSSTSP 225 (488)
T ss_pred cchhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhheeccc
Confidence 389999999999999999777777799999999999999999999999999999999999999 9999999999988765
Q ss_pred ccC
Q 047609 174 SIG 176 (696)
Q Consensus 174 ~~~ 176 (696)
..+
T Consensus 226 ~~~ 228 (488)
T KOG2197|consen 226 EQS 228 (488)
T ss_pred ccc
Confidence 554
No 22
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.0025 Score=67.58 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=97.3
Q ss_pred CchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhchhhHHHHHHHHHHhhhc--ccCCCChHHHHHHHHHHHHH
Q 047609 424 MTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRN--NFQMEGPTGVMKQLEELWHI 501 (696)
Q Consensus 424 ~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE~dAFw~F~~LM~rir~--~f~~~~~~gi~~~l~vL~~L 501 (696)
+..+....+.||.+.+...|+|.+|..+.-+++.+|....+|++.|--.++++.--.+ .....+.......+-.|..+
T Consensus 107 nargegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafesscmtfgdl 186 (559)
T KOG2801|consen 107 NARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDL 186 (559)
T ss_pred cCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHH
Confidence 3456677889999999999999999999999998888888999887666555522100 11111112333345567778
Q ss_pred HHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHhhHHHHhccchhHHHHHHHHHHHHHHH
Q 047609 502 LELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVV 571 (696)
Q Consensus 502 Lk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLWDv~faeG~~~~~~~~L~yvclA~Lll 571 (696)
+.++....++.+....-+.......|-.-|| .++|+....|++|+|+.+|+. .+..+.+|+|..
T Consensus 187 vnkycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegyk-----vlyrvalailkf 250 (559)
T KOG2801|consen 187 VNKYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGYK-----VLYRVALAILKF 250 (559)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecchH-----HHHHHHHHHHHH
Confidence 8887777776665433232223336655555 689999999999999999864 556677776654
No 23
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=94.32 E-value=0.016 Score=64.30 Aligned_cols=35 Identities=43% Similarity=0.863 Sum_probs=32.8
Q ss_pred CCcccCChhHHHHHHHHhhhchhhHHHHHHHHHHh
Q 047609 444 ATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRR 478 (696)
Q Consensus 444 dIGYcQGMNdIaapLLlv~~dE~dAFw~F~~LM~r 478 (696)
-+|..|||++++||+|.-..+|.++||||+.||..
T Consensus 565 fvglmqgmsdlvapilaevldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 565 FVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN 599 (781)
T ss_pred hhhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence 36899999999999999999999999999999985
No 24
>PF14961 BROMI: Broad-minded protein
Probab=91.53 E-value=0.88 Score=56.74 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhh-hchhhHHHHHHHHHHhh--------hcccC--CC------ChHH
Q 047609 428 LARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLF-EDNADAFWCFEMLLRRM--------RNNFQ--ME------GPTG 490 (696)
Q Consensus 428 ~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~-~dE~dAFw~F~~LM~ri--------r~~f~--~~------~~~g 490 (696)
..+..+||+.|..+.+.=+|- |..-.++.+++++ .+-..+.-++.++-..+ |-+.. .+ +...
T Consensus 1083 ~~s~l~~~~~~~~~~~~~~y~-g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p 1161 (1296)
T PF14961_consen 1083 VKSSLHILFEFIHFCLQGSYP-GHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHP 1161 (1296)
T ss_pred ccchhHHHhhhhcccCCCCCC-CchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCc
Confidence 344456677766666665664 6665566555555 44444443333332222 11110 11 1111
Q ss_pred HHH-HHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHhhHHHHhccchhHHHHHHHHHHHHH
Q 047609 491 VMK-QLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQL 569 (696)
Q Consensus 491 i~~-~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLWDv~faeG~~~~~~~~L~yvclA~L 569 (696)
+.- .++.++.+|+...|.+|.-|..-|..+...+.+|+.-+|=+-|++..++...=+.+..|.+ +-.|+|+|++
T Consensus 1162 ~~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~d-----yqvY~~Vail 1236 (1296)
T PF14961_consen 1162 VYFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPD-----YQVYICVAIL 1236 (1296)
T ss_pred hhhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCcc-----ceeehhHHHH
Confidence 221 3677899999999999999999999999999999999999999998877666666666644 4568899988
Q ss_pred HHHhhcch--hhhhhhhhccCCCC
Q 047609 570 VVQLSRES--VVIREGSTENSGGD 591 (696)
Q Consensus 570 ll~~~~~L--~d~~E~m~~Lq~~p 591 (696)
....+..| .+-++...||...+
T Consensus 1237 kHlq~~ilq~~q~q~L~~flke~~ 1260 (1296)
T PF14961_consen 1237 KHLQPEILQHTQTQDLQVFLKEEA 1260 (1296)
T ss_pred HHhhHHHHHhhhhchHHHHhhhcc
Confidence 88777777 44455566665555
No 25
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=69.12 E-value=5.9 Score=39.05 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=24.0
Q ss_pred CCchhhhHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047609 127 PSIRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVMH 172 (696)
Q Consensus 127 psiR~EVWpFLLG~Y~~~ST~eER~~l~~~~r~eY~~lk~q~~~~~ 172 (696)
.++|++||+.|||+.+ ..+..|...+.++....
T Consensus 1 ~~~R~~vW~~ll~~~~-------------~~~~~~~~~~~~~~~~~ 33 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEP-------------NYSNNYQDEKNQWEQIE 33 (214)
T ss_dssp -CCHHHHHHHHCTCSC-------------HHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHccch-------------hhhhhHHHHhhhhhhhh
Confidence 3689999999999999 44555556666665553
No 26
>PRK05414 urocanate hydratase; Provisional
Probab=52.43 E-value=22 Score=41.37 Aligned_cols=80 Identities=19% Similarity=0.314 Sum_probs=59.0
Q ss_pred CCccCHHHHHHHHHhCCCCCCchhhhH----HHhhccCCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHhhcccCCC
Q 047609 108 GKVSGFHKALKLIVLGGVDPSIRPEVW----EFLLGCYAPGSTAEYRKQLRIARRERYE-----DLIKQCQVMHSSIGTG 178 (696)
Q Consensus 108 Grl~~~~~~~k~I~~GGvdpsiR~EVW----pFLLG~Y~~~ST~eER~~l~~~~r~eY~-----~lk~q~~~~~~~~~~~ 178 (696)
|-+-|...++..+..-||.|++-..== |+- ||||..-|.||+.+++++..++|. .|++|.+.|......|
T Consensus 239 g~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~-GY~P~G~t~ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~G 317 (556)
T PRK05414 239 GLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLN-GYLPVGWTLEEAAELRAEDPEEFVKAAKASMARHVEAMLAFQARG 317 (556)
T ss_pred EEeccHHHHHHHHHHcCCCCCccCcCccccCccc-ccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 444578899999988899998754321 223 999999999999999999888885 5678888887666655
Q ss_pred cceeeccccc
Q 047609 179 SLAYVVGSKV 188 (696)
Q Consensus 179 ~~~~~~~~~~ 188 (696)
.....-|-.+
T Consensus 318 ~~~fDYGN~~ 327 (556)
T PRK05414 318 AYVFDYGNNI 327 (556)
T ss_pred CeeeeccHHH
Confidence 4444334433
No 27
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=52.27 E-value=22 Score=41.21 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=59.2
Q ss_pred CCccCHHHHHHHHHhCCCCCCchhhhHHH---hhccCCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHhhcccCCCc
Q 047609 108 GKVSGFHKALKLIVLGGVDPSIRPEVWEF---LLGCYAPGSTAEYRKQLRIARRERYE-----DLIKQCQVMHSSIGTGS 179 (696)
Q Consensus 108 Grl~~~~~~~k~I~~GGvdpsiR~EVWpF---LLG~Y~~~ST~eER~~l~~~~r~eY~-----~lk~q~~~~~~~~~~~~ 179 (696)
|-+-|...++..+..-||.|+|-..==+- |-||||..-|.||+.+++++..++|. .|++|.+.|......|.
T Consensus 230 g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~Ga 309 (545)
T TIGR01228 230 GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLRQEEPEAYVKAAKQSMAKHVRAMLAFQKQGS 309 (545)
T ss_pred EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 44557889999888889999876543222 56999999999999999999888886 46778888876666554
Q ss_pred ceeeccc
Q 047609 180 LAYVVGS 186 (696)
Q Consensus 180 ~~~~~~~ 186 (696)
....-|-
T Consensus 310 ~~fDYGN 316 (545)
T TIGR01228 310 VTFDYGN 316 (545)
T ss_pred eeeeccH
Confidence 4433343
No 28
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.71 E-value=21 Score=40.82 Aligned_cols=47 Identities=26% Similarity=0.513 Sum_probs=33.0
Q ss_pred CHHHHhhhhCCC------CCccCHHHHHHHHHhCCCCCCchhhhHHHhhccCC
Q 047609 96 KPEKWQACFDSD------GKVSGFHKALKLIVLGGVDPSIRPEVWEFLLGCYA 142 (696)
Q Consensus 96 s~~~W~~~fd~~------Grl~~~~~~~k~I~~GGvdpsiR~EVWpFLLG~Y~ 142 (696)
+..+|...+.++ -+......-+|+..++||-|+.|++||-.+.|-+.
T Consensus 122 ~~~~~~l~~~~~~~~~~~~~~~~~s~elk~liRkGiP~~~R~~VW~~~~g~~~ 174 (436)
T KOG2058|consen 122 RQLRWELELQSNIKLHSPNDFPPRSDELKRLIRKGIPPELRGEVWWVLSGARR 174 (436)
T ss_pred HHHHHHHHhhhhhcccccccccCCcHHHHHHHHcCCChhhhhHHHHHHhcchh
Confidence 346677777665 11112344567777899999999999999999443
No 29
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=40.15 E-value=42 Score=38.68 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=59.4
Q ss_pred CCccCHHHHHHHHHhCCCCCCchhhh---HHHhhccCCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHhhcccCCCc
Q 047609 108 GKVSGFHKALKLIVLGGVDPSIRPEV---WEFLLGCYAPGSTAEYRKQLRIARRERYED-----LIKQCQVMHSSIGTGS 179 (696)
Q Consensus 108 Grl~~~~~~~k~I~~GGvdpsiR~EV---WpFLLG~Y~~~ST~eER~~l~~~~r~eY~~-----lk~q~~~~~~~~~~~~ 179 (696)
|-+-|..+++..++.-|+.|++-.+- =--|.||+|..-|.||+.++|.+-+++|.+ |+++.+.|......|.
T Consensus 239 gl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~lr~~d~~~~~~~a~~sm~~hv~Aml~~q~~G~ 318 (561)
T COG2987 239 GLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADELREEDPDKYRKLARASMARHVEAMLAFQDRGV 318 (561)
T ss_pred EEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44448899999999999999976543 334789999999999999999999998865 5667777764444443
Q ss_pred ceeeccccc
Q 047609 180 LAYVVGSKV 188 (696)
Q Consensus 180 ~~~~~~~~~ 188 (696)
....-|-++
T Consensus 319 ~~fDYGNni 327 (561)
T COG2987 319 PTFDYGNNI 327 (561)
T ss_pred eeeecchHH
Confidence 333334433
No 30
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=37.27 E-value=34 Score=38.08 Aligned_cols=40 Identities=35% Similarity=0.530 Sum_probs=31.0
Q ss_pred CCCCchhhhHHHhhcc---------------------------------CCCCCCHHHHHHHHHHHHHHHHHH
Q 047609 125 VDPSIRPEVWEFLLGC---------------------------------YAPGSTAEYRKQLRIARRERYEDL 164 (696)
Q Consensus 125 vdpsiR~EVWpFLLG~---------------------------------Y~~~ST~eER~~l~~~~r~eY~~l 164 (696)
|+-++|+.|||-|+|+ ||++..++.|.++++++.+---..
T Consensus 62 v~dslRk~vWp~L~~~~~n~~~~~~~~~~~q~hkd~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rV 134 (395)
T KOG2595|consen 62 VNDSLRKDVWPELLALNINHLDATSTLTPVQKHKDYNQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRV 134 (395)
T ss_pred ccHHHHHHHHHHHhccccCCCcccccCChhhhCcccceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7889999999999864 778888888888877776544333
No 31
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=32.10 E-value=55 Score=38.23 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=45.1
Q ss_pred CCccCHHHHHHHHHhCCCCCCchhhh----HHHhhccCCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHhhcccCCC
Q 047609 108 GKVSGFHKALKLIVLGGVDPSIRPEV----WEFLLGCYAPGSTAEYRKQLRIARRERYE-----DLIKQCQVMHSSIGTG 178 (696)
Q Consensus 108 Grl~~~~~~~k~I~~GGvdpsiR~EV----WpFLLG~Y~~~ST~eER~~l~~~~r~eY~-----~lk~q~~~~~~~~~~~ 178 (696)
|-+-|...+...+..-|+-|++-..= =|+- ||||..-|.||..+++++..++|. .|++|.+.|......|
T Consensus 229 g~~GN~ad~~~~l~~~~i~pDl~tDQTS~Hdp~~-GY~P~g~t~eea~~l~~~dp~~~~~~v~~Sl~rhv~Am~~~~~~G 307 (546)
T PF01175_consen 229 GLLGNAADLWEELVERGIIPDLVTDQTSAHDPLN-GYYPAGLTFEEANELRAEDPEEFKERVQESLARHVEAMLELQDRG 307 (546)
T ss_dssp EEES-HHHHHHHHHHTT---SEE---SSTT-TTT-S---TT--HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeccHHHHHHHHHHcCCCCCcccCCCccccccc-cCCCCCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 44447899999999889988875432 2334 999999999999999999888886 4677888887655554
Q ss_pred cc
Q 047609 179 SL 180 (696)
Q Consensus 179 ~~ 180 (696)
..
T Consensus 308 ~~ 309 (546)
T PF01175_consen 308 AY 309 (546)
T ss_dssp -E
T ss_pred CE
Confidence 43
No 32
>PHA02939 hypothetical protein; Provisional
Probab=26.81 E-value=74 Score=30.38 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=34.2
Q ss_pred HHhhccCCCCCCHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhhcccC
Q 047609 135 EFLLGCYAPGSTAEYRK-----------------------QLRIARRERYEDLIKQCQVMHSSIG 176 (696)
Q Consensus 135 pFLLG~Y~~~ST~eER~-----------------------~l~~~~r~eY~~lk~q~~~~~~~~~ 176 (696)
+-....|++.||..+|+ .++.+||+.|.+|.++....+..|.
T Consensus 75 kaV~~l~DP~st~~qrEyae~~l~~lle~~~r~f~~Ll~~ci~ekRreKYLkLiEEFnKvKEMIe 139 (144)
T PHA02939 75 KAVKELYDPESTDDQREYAEHRLKGLLELLERNFNQLLEFCIDEKRREKYLKLIEEFNKVKEMIE 139 (144)
T ss_pred HHHHHHhCCccchhHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999887 3578899999999999887766553
No 33
>PHA02629 A-type inclusion body protein; Provisional
Probab=21.55 E-value=51 Score=27.03 Aligned_cols=14 Identities=36% Similarity=0.748 Sum_probs=10.4
Q ss_pred cCCCCCCCCCCCCC
Q 047609 41 TGGGGGRGSGGGGG 54 (696)
Q Consensus 41 ~~~~~~~~~~~~~~ 54 (696)
.||.|+.||||+.-
T Consensus 14 d~gng~~gngc~s~ 27 (61)
T PHA02629 14 DGGNGNGGNGCTSS 27 (61)
T ss_pred ccCCCCCCCCccch
Confidence 46778888998753
Done!