Query 047609
Match_columns 696
No_of_seqs 379 out of 1403
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 22:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 2.9E-45 9.8E-50 398.8 20.6 209 389-618 88-383 (396)
2 2qfz_A TBC1 domain family memb 100.0 2.4E-45 8.3E-50 390.9 16.9 207 389-619 106-338 (345)
3 3qye_A TBC1 domain family memb 100.0 8.9E-43 3E-47 368.9 4.9 199 389-615 105-309 (331)
4 2qq8_A TBC1 domain family memb 100.0 9.9E-41 3.4E-45 354.9 19.9 199 388-616 110-311 (334)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 7.4E-40 2.5E-44 343.9 7.2 195 395-615 76-276 (310)
6 4hl4_A TBC1 domain family memb 100.0 1E-33 3.6E-38 295.3 11.1 185 387-591 82-270 (292)
7 3qwl_A TBC1 domain family memb 100.0 4.6E-31 1.6E-35 277.3 15.5 150 447-613 131-282 (294)
8 4hl4_A TBC1 domain family memb 90.3 0.1 3.6E-06 53.8 2.3 50 96-147 19-70 (292)
9 1x87_A Urocanase protein; stru 29.8 46 0.0016 37.3 4.8 70 108-180 234-314 (551)
10 2fkn_A Urocanate hydratase; ro 27.7 44 0.0015 37.5 4.2 69 108-179 235-314 (552)
11 1uwk_A Urocanate hydratase; hy 26.6 47 0.0016 37.2 4.2 70 108-180 239-319 (557)
12 1uvq_C Orexin; immunology, MHC 21.4 43 0.0015 23.4 1.6 19 35-53 13-33 (33)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=2.9e-45 Score=398.80 Aligned_cols=209 Identities=24% Similarity=0.418 Sum_probs=187.0
Q ss_pred hhhccccCCCCCCCCCCCCCCcchhhhhhhhccccCchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhh-----
Q 047609 389 DRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFE----- 463 (696)
Q Consensus 389 d~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~----- 463 (696)
++|+. ||+||||. +.||+++.+++.|+|||.+|+.+||++|||||||+||+|||+++.
T Consensus 88 ~qI~~-Dv~RT~p~----------------~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~ 150 (396)
T 1fkm_A 88 HQIEI-DIPRTNPH----------------IPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLP 150 (396)
T ss_dssp HHHHH-HGGGSSTT----------------SGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSC
T ss_pred HHHHH-HhhhhCCC----------------cccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhcc
Confidence 45655 99999998 578888899999999999999999999999999999999999862
Q ss_pred -------------c----------hhhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCc
Q 047609 464 -------------D----------NADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAES 520 (696)
Q Consensus 464 -------------d----------E~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~ 520 (696)
+ |++|||||+.||.+++++|. .+..|+...+..+..+|+.++|+||+||+++++.+
T Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~-~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~ 229 (396)
T 1fkm_A 151 PSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI-HGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEF 229 (396)
T ss_dssp GGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS-TTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCT
T ss_pred ccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 1 89999999999999988775 45789999999999999999999999999999999
Q ss_pred chhhHHHHHHhhccCCChhHHHHHhhHHHHhccc----------------------------------------------
Q 047609 521 LHFAFRMLLVLFRRELSFNEALCMWEMMWAADYD---------------------------------------------- 554 (696)
Q Consensus 521 ~lFa~rWfltLFsreLp~e~vlRLWDv~faeG~~---------------------------------------------- 554 (696)
.+|+++||++||+++||+++++||||+||++|..
T Consensus 230 ~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 309 (396)
T 1fkm_A 230 IQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTP 309 (396)
T ss_dssp HHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCcccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999800
Q ss_pred ---h---------hHHHHHHHHHHHHHHHHhhcch-hhhhhhhhccCCCCCCCCCCCCCCCCccccccccccccccc
Q 047609 555 ---E---------ASASTLEEKCLEQLVVQLSRES-VVIREGSTENSGGDLKGGLQPKNGNIECSVSADDGIKSASA 618 (696)
Q Consensus 555 ---~---------~~~~~L~yvclA~Lll~~~~~L-~d~~E~m~~Lq~~p~~~~~k~~~~d~e~lla~~~~mK~~~~ 618 (696)
. .+..++.++|+|+|......++ .+|.++|.+|++.|. ..|.+.|++.+++.++.+|..+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~---~~~~~~di~~ll~~A~~l~~~~~ 383 (396)
T 1fkm_A 310 NNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPT---KDWTETDIEMLLSEAFIWQSLYK 383 (396)
T ss_dssp -------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSC---TTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccchhccccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCC---CCcccccHHHHHHHHHHHHHHHh
Confidence 0 2357899999999998888888 899999999999985 56778899999999998888843
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=2.4e-45 Score=390.87 Aligned_cols=207 Identities=23% Similarity=0.344 Sum_probs=181.7
Q ss_pred hhhccccCCCCCCCCCCCCCCcchhhhhhhhccccCchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhh-----
Q 047609 389 DRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFE----- 463 (696)
Q Consensus 389 d~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~----- 463 (696)
++|.. ||+||||. ++|+++..++.|+|||.+||.+||++|||||||+||+|||+++.
T Consensus 106 ~~I~~-Dv~RT~p~-----------------~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~ 167 (345)
T 2qfz_A 106 RQIHI-DIPRMSPE-----------------ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIE 167 (345)
T ss_dssp HHHHH-HGGGCSCH-----------------HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC
T ss_pred HHHHH-hCcccCCc-----------------cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcc
Confidence 44555 99999974 46777788999999999999999999999999999999999875
Q ss_pred -------------------chhhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhh
Q 047609 464 -------------------DNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFA 524 (696)
Q Consensus 464 -------------------dE~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa 524 (696)
+|++|||||+.+|++++++|. .+..|+...+..+..+|+.++|+||+||.+.++.+.+|+
T Consensus 168 ~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~-~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~ 246 (345)
T 2qfz_A 168 AEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYT-FAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFA 246 (345)
T ss_dssp -----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSS-TTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHH
T ss_pred cccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHH
Confidence 389999999999999987775 457899999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCChhHHHHHhhHHHHhccchhHHHHHHHHHHHHHHHHhhcch--hhhhhhhhccCCCCCCCCCCCCCCC
Q 047609 525 FRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRES--VVIREGSTENSGGDLKGGLQPKNGN 602 (696)
Q Consensus 525 ~rWfltLFsreLp~e~vlRLWDv~faeG~~~~~~~~L~yvclA~Lll~~~~~L--~d~~E~m~~Lq~~p~~~~~k~~~~d 602 (696)
++||++||+++||+++++||||+||++|.. +..+++|+|+|+|+....+.| .++.+++.++++.|. ..|...|
T Consensus 247 ~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~--~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~---~~~~~~d 321 (345)
T 2qfz_A 247 FRWMNNLLMREVPLRCTIRLWDTYQSEPDG--FSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPT---AHWDDED 321 (345)
T ss_dssp HHHHHTTTTTTSCHHHHHHHHHHHTTSTTT--TTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSC---TTCCHHH
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCC---cCCchhH
Confidence 999999999999999999999999999742 334678899999888777777 699999999999985 4566678
Q ss_pred Ccccccccccccccccc
Q 047609 603 IECSVSADDGIKSASAH 619 (696)
Q Consensus 603 ~e~lla~~~~mK~~~~~ 619 (696)
++.+++.++.+|..+..
T Consensus 322 i~~ll~~A~~l~~~~~~ 338 (345)
T 2qfz_A 322 ISLLLAEAYRLKFAFAD 338 (345)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999988888543
No 3
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=8.9e-43 Score=368.87 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=173.0
Q ss_pred hhhccccCCCCCCCCCCCCCCcchhhhhhhhccccC--chhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhchh
Q 047609 389 DRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRM--TKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNA 466 (696)
Q Consensus 389 d~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~--~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE~ 466 (696)
++|+. ||+||||+ +.+|.. +.+++.|++||.+|+.+||++|||||||+||++||+++ +|+
T Consensus 105 ~~I~~-Dv~Rt~~~----------------~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~ 166 (331)
T 3qye_A 105 HAILI-DLGRTFPT----------------HPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEE 166 (331)
T ss_dssp HHHHH-HHTTSSTT----------------STTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHH
T ss_pred hHHHH-hhcccCCC----------------chhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHH
Confidence 34655 99999998 456654 48899999999999999999999999999999997765 799
Q ss_pred hHHHHHHHHHHhh--hcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHH
Q 047609 467 DAFWCFEMLLRRM--RNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCM 544 (696)
Q Consensus 467 dAFw~F~~LM~ri--r~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRL 544 (696)
+|||||+.+|.++ +..| .+++.++...+..+..+|+.++|+||+||.+.++.+.+|+++||+++|++++|++.++||
T Consensus 167 ~aF~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrl 245 (331)
T 3qye_A 167 EAFKMLKFLMFDMGLRKQY-RPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARV 245 (331)
T ss_dssp HHHHHHHHHHTTTCGGGGG-STTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHH
Confidence 9999999999874 4444 567889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhccchhHHHHHHHHHHHHHHHHhhcch-h-hhhhhhhccCCCCCCCCCCCCCCCCcccccccccccc
Q 047609 545 WEMMWAADYDEASASTLEEKCLEQLVVQLSRES-V-VIREGSTENSGGDLKGGLQPKNGNIECSVSADDGIKS 615 (696)
Q Consensus 545 WDv~faeG~~~~~~~~L~yvclA~Lll~~~~~L-~-d~~E~m~~Lq~~p~~~~~k~~~~d~e~lla~~~~mK~ 615 (696)
||+||++|.. +++++|+|+|.......+ . ++.+++.++++.+ +.+...|++.+++.++.+|.
T Consensus 246 wD~~l~~g~~-----~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~----p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 246 FDMIFLQGTE-----VIFKVALSLLGSHKPLILQHENLETIVDFIKSTL----PNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHCTT-----HHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTT----TCCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHCCcH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCCCHHHHHHHHHHHHhCCc
Confidence 9999999854 688899999998888888 3 8999999999844 22445567778888877776
No 4
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.9e-41 Score=354.93 Aligned_cols=199 Identities=17% Similarity=0.174 Sum_probs=170.6
Q ss_pred hhhhccccCCCCCCCCCCCCCCcchhhhhhhhccccC-chhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhchh
Q 047609 388 TDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRM-TKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNA 466 (696)
Q Consensus 388 ld~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~-~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE~ 466 (696)
.++|+. ||+||||+ +.+|+. +.+++.|+|||.+|+.+||++|||||||+|||+||++ .+|+
T Consensus 110 ~~~I~~-Dv~RT~p~----------------~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~-~~E~ 171 (334)
T 2qq8_A 110 LELIKL-DISRTFPN----------------LCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILN-LDTA 171 (334)
T ss_dssp HHHHHH-HHHTSSGG----------------GCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHH-SCHH
T ss_pred HHHHHH-HHhhcCCC----------------chhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhc-CCHH
Confidence 355666 99999998 566664 4689999999999999999999999999999999876 4799
Q ss_pred hHHHHHHHHHHhhh-cccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHh
Q 047609 467 DAFWCFEMLLRRMR-NNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMW 545 (696)
Q Consensus 467 dAFw~F~~LM~rir-~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLW 545 (696)
+|||||++||+++. ..|+..+..++...+..+..+|+..+|+||+||.+.++.+.+|+++||+|||+++||++.++|||
T Consensus 172 ~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriW 251 (334)
T 2qq8_A 172 DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIW 251 (334)
T ss_dssp HHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHH
Confidence 99999999999864 23445567788899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhccchhHHHHHHHHHHHHHHHHhhcch-hhhhhhhhccCCCCCCCCCCCCCCCCccccccccccccc
Q 047609 546 EMMWAADYDEASASTLEEKCLEQLVVQLSRES-VVIREGSTENSGGDLKGGLQPKNGNIECSVSADDGIKSA 616 (696)
Q Consensus 546 Dv~faeG~~~~~~~~L~yvclA~Lll~~~~~L-~d~~E~m~~Lq~~p~~~~~k~~~~d~e~lla~~~~mK~~ 616 (696)
|+||++|. .+++++|+|+|......++ .++.+++.+++++|.. -|.+.++..+..++..
T Consensus 252 D~~l~eg~-----~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~-------~d~~~l~~~a~~l~~~ 311 (334)
T 2qq8_A 252 DVFCRDGE-----EFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPED-------LPAEELFASIATIQMQ 311 (334)
T ss_dssp HHHHHHCH-----HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTT-------CCHHHHHHHHHHCCCE
T ss_pred HHHHHcCC-----HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCc-------CCHHHHHHHHHHccCc
Confidence 99999974 4678899999988888888 7999999999999842 2455556655544443
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.4e-40 Score=343.87 Aligned_cols=195 Identities=14% Similarity=0.162 Sum_probs=169.4
Q ss_pred cCCCCCCCCCCCCCCcchhhhhhhhccccC--chhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhchhhHHHHH
Q 047609 395 DAPDVPLNTTTSPGEAVNEERIVILNSMRM--TKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCF 472 (696)
Q Consensus 395 DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~--~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE~dAFw~F 472 (696)
||+||||+ +.+|.+ +.+++.|+|||.+|+.+||++|||||||+||++||+++ +|++|||||
T Consensus 76 Dv~Rt~p~----------------~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l 138 (310)
T 3hzj_A 76 DIHRTFPA----------------HDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVL 138 (310)
T ss_dssp HHTTSSTT----------------STTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HHHhhCCC----------------chhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHH
Confidence 99999998 456654 37899999999999999999999999999999998886 799999999
Q ss_pred HHHHHh--hhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCChhHHHHHhhHHHH
Q 047609 473 EMLLRR--MRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWA 550 (696)
Q Consensus 473 ~~LM~r--ir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp~e~vlRLWDv~fa 550 (696)
+.+|.+ +++.| .+++.++...+..+..+|+.++|+||+||.+.|+.+.+|+++||+|+|++++|++.++||||++|+
T Consensus 139 ~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~ 217 (310)
T 3hzj_A 139 VKIMYDYGLRDLY-RNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLC 217 (310)
T ss_dssp HHHHHTSCGGGGT-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcccccccc-cccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 999987 45555 556778888999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhcch-hhhhhhhhccC-CCCCCCCCCCCCCCCcccccccccccc
Q 047609 551 ADYDEASASTLEEKCLEQLVVQLSRES-VVIREGSTENS-GGDLKGGLQPKNGNIECSVSADDGIKS 615 (696)
Q Consensus 551 eG~~~~~~~~L~yvclA~Lll~~~~~L-~d~~E~m~~Lq-~~p~~~~~k~~~~d~e~lla~~~~mK~ 615 (696)
+|.. +++++|+|++.....+++ .++.+++.+++ ++|. .-+.+.|++.+++.++.+|.
T Consensus 218 ~g~~-----~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~lp~---~~~~~~d~~~ll~~A~~l~~ 276 (310)
T 3hzj_A 218 EGLN-----IIFHVALALLKTSKEDLLQADFEGALKFFRVQLPK---RYRAEENARRLMEQACNIKV 276 (310)
T ss_dssp HCTT-----HHHHHHHHHHHHTHHHHHTCCHHHHHHHHHTHHHH---TTCSHHHHHHHHHHHHHSCC
T ss_pred CCcH-----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCcc---cccccccHHHHHHHHHhcCC
Confidence 9853 577899999998888888 89999999997 5663 22334466777777777763
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=1e-33 Score=295.34 Aligned_cols=185 Identities=14% Similarity=0.095 Sum_probs=157.9
Q ss_pred HhhhhccccCCCCCCCCCCCCCCcchhhhhhhhccccCchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhhchh
Q 047609 387 ITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNA 466 (696)
Q Consensus 387 ild~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~dE~ 466 (696)
..++|+. ||+||||.++.+.. .++....++.|.|||.+|+++||++|||||||+||++||+++ +|+
T Consensus 82 ~~~qI~~-Dv~RT~~~~~~~~~------------~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~ 147 (292)
T 4hl4_A 82 DYQQVLL-DVRRSLRRFPPGMP------------EEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GER 147 (292)
T ss_dssp THHHHHH-HHHTTGGGSCTTSC------------HHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHH
T ss_pred hHHHHHH-hhhhhhhhccCCCC------------HHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHH
Confidence 3567877 99999997521110 012356788999999999999999999999999999998665 799
Q ss_pred hHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHHHHHHhhccCCC-hhHHHHHh
Q 047609 467 DAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELS-FNEALCMW 545 (696)
Q Consensus 467 dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~rWfltLFsreLp-~e~vlRLW 545 (696)
+|||||+.+|+...+.|+.+++.++...+.++..+|+..+|+||+||.+.++. .+|+++||+|+|++++| ++.++|||
T Consensus 148 ~aF~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlW 226 (292)
T 4hl4_A 148 LATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLY 226 (292)
T ss_dssp HHHHHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHH
Confidence 99999999999866677777788888899999999999999999999999994 68999999999999996 99999999
Q ss_pred hHHHHhccchhHHHHHHHHHHHHHHHHhhcch---hhhhhhhhccCCCC
Q 047609 546 EMMWAADYDEASASTLEEKCLEQLVVQLSRES---VVIREGSTENSGGD 591 (696)
Q Consensus 546 Dv~faeG~~~~~~~~L~yvclA~Lll~~~~~L---~d~~E~m~~Lq~~p 591 (696)
|++|++|.. +++++|+|+++....+.+ .++.+++.+++++|
T Consensus 227 D~~l~~g~~-----~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp 270 (292)
T 4hl4_A 227 DFFLACHPL-----MPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIP 270 (292)
T ss_dssp HHHHHSCTT-----HHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCC
T ss_pred HHHHHcCCc-----HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 999999853 677889888888777777 27888899999998
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.97 E-value=4.6e-31 Score=277.34 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=130.0
Q ss_pred ccCChhHHHHHHHHhhhchhhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhhHH
Q 047609 447 YCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFR 526 (696)
Q Consensus 447 YcQGMNdIaapLLlv~~dE~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa~r 526 (696)
++|||..||+++++++.+|++|||||+.||++++++|. .+.+|++..+ ..+|+.++|+||+||++.++.+.+++.+
T Consensus 131 ~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~-~~~~gl~~~l---~~LL~~~dP~L~~HL~~~~i~~~~~~~r 206 (294)
T 3qwl_A 131 DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYR-DSLPQLPKAF---EQYLNLEDGRLLTHLRMCSAAPKLPYDL 206 (294)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTT-TTGGGHHHHH---HHHHHHHCHHHHHHHHHTTCGGGSCHHH
T ss_pred chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhC-CChhHHHHHH---HHHHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 55999999999999999999999999999999887774 5577887654 8899999999999999999988777779
Q ss_pred HHHHhhccCCChhHHHHHhhHHHHhccchhHHHHHHHHHHHHHHHHhhcch-hhh-hhhhhccCCCCCCCCCCCCCCCCc
Q 047609 527 MLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRES-VVI-REGSTENSGGDLKGGLQPKNGNIE 604 (696)
Q Consensus 527 WfltLFsreLp~e~vlRLWDv~faeG~~~~~~~~L~yvclA~Lll~~~~~L-~d~-~E~m~~Lq~~p~~~~~k~~~~d~e 604 (696)
||+++|++++|++.++||||++|+++. .+++++|+|+|.....+++ .++ .+++.++|++|. .|++
T Consensus 207 Wfl~lF~~~~p~~~vlRlWD~~~~~~~-----~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~--------~di~ 273 (294)
T 3qwl_A 207 WFKRCFAGCLPESSLQRVWDKVVSGSC-----KILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQ--------DSSD 273 (294)
T ss_dssp HHTSTTTTTSCHHHHHHHHHHHHTTCS-----THHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCS--------TTHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHhCCc-----hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCc--------ccHH
Confidence 999999999999999999999999753 4778899999999888888 666 778999999984 2467
Q ss_pred ccccccccc
Q 047609 605 CSVSADDGI 613 (696)
Q Consensus 605 ~lla~~~~m 613 (696)
.+++.++.+
T Consensus 274 ~ll~~A~~l 282 (294)
T 3qwl_A 274 AIVSKAIDL 282 (294)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
No 8
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=90.29 E-value=0.1 Score=53.79 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=38.4
Q ss_pred CHHHHhhhhCCCCCccCHHHHHHHHHhC-C-CCCCchhhhHHHhhccCCCCCCH
Q 047609 96 KPEKWQACFDSDGKVSGFHKALKLIVLG-G-VDPSIRPEVWEFLLGCYAPGSTA 147 (696)
Q Consensus 96 s~~~W~~~fd~~Grl~~~~~~~k~I~~G-G-vdpsiR~EVWpFLLG~Y~~~ST~ 147 (696)
..+++..+...+. .|..++++.+..+ | +.+++|+.||+.|||+.+..++.
T Consensus 19 k~~~i~~~l~~~~--~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~ 70 (292)
T 4hl4_A 19 KVAEIHQALNSDP--TDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP 70 (292)
T ss_dssp HHHHHHHHHTSSS--CCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS
T ss_pred HHHHHHHHHcCCc--ccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC
Confidence 3556666775554 3789999988853 4 67789999999999999987654
No 9
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=29.83 E-value=46 Score=37.29 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=54.3
Q ss_pred CCccCHHHHHHHHHhCCCCCCchh------hhHHHhhccCCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHhhcccC
Q 047609 108 GKVSGFHKALKLIVLGGVDPSIRP------EVWEFLLGCYAPGSTAEYRKQLRIARRERYE-----DLIKQCQVMHSSIG 176 (696)
Q Consensus 108 Grl~~~~~~~k~I~~GGvdpsiR~------EVWpFLLG~Y~~~ST~eER~~l~~~~r~eY~-----~lk~q~~~~~~~~~ 176 (696)
|-+-|...+..++..-||.|++-. ..|- ||||..-|.||+.+++++..++|. .|++|.+.|.....
T Consensus 234 g~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~---GY~P~g~t~ee~~~l~~~dp~~~~~~~~~Sm~rhv~am~~~~~ 310 (551)
T 1x87_A 234 GLVGNAAEVLPRLVETGFVPDVLTDQTSAHDPLN---GYIPAGLTLDEAAELRARDPKQYIARAKQSIAAHVRAMLAMQK 310 (551)
T ss_dssp EEESCHHHHHHHHHHTTCCCSEECCCSCTTCTTT---TCCCTTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHCCCCCCCCCCCccccCccc---ccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 434478899998888899998753 3333 999999999999999999888875 56778888876555
Q ss_pred CCcc
Q 047609 177 TGSL 180 (696)
Q Consensus 177 ~~~~ 180 (696)
.|..
T Consensus 311 ~G~~ 314 (551)
T 1x87_A 311 QGAV 314 (551)
T ss_dssp TTCE
T ss_pred CCCe
Confidence 5543
No 10
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=27.74 E-value=44 Score=37.46 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=53.6
Q ss_pred CCccCHHHHHHHHHhCCCCCCchh------hhHHHhhccCCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHhhcccC
Q 047609 108 GKVSGFHKALKLIVLGGVDPSIRP------EVWEFLLGCYAPGSTAEYRKQLRIARRERYE-----DLIKQCQVMHSSIG 176 (696)
Q Consensus 108 Grl~~~~~~~k~I~~GGvdpsiR~------EVWpFLLG~Y~~~ST~eER~~l~~~~r~eY~-----~lk~q~~~~~~~~~ 176 (696)
|-+-|...+..++..-||.|++-. ..|- ||||..-|.||+.+++++..++|. .|++|.+.|.....
T Consensus 235 g~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~---GY~P~g~t~ee~~~l~~~dp~~~~~~~~~Sm~rhv~am~~~~~ 311 (552)
T 2fkn_A 235 ALLGNAAEVHHTLLNRGVKIDIVTDQTSAHDPLI---GYVPEGYSLDEADRLRQDTPELYVRLAKQSMKKHVEAMLAFQQ 311 (552)
T ss_dssp EEESCHHHHHHHHHTTTCCCSEECCCSCTTCTTT---TCCCTTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHCCCCCCCCCCCccccCccc---ccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 434478999999998899998753 3333 999999999999999999888875 56778888865555
Q ss_pred CCc
Q 047609 177 TGS 179 (696)
Q Consensus 177 ~~~ 179 (696)
.|.
T Consensus 312 ~G~ 314 (552)
T 2fkn_A 312 KGS 314 (552)
T ss_dssp HTC
T ss_pred CCC
Confidence 443
No 11
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=26.58 E-value=47 Score=37.24 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=53.4
Q ss_pred CCccCHHHHHHHHHhCCCCCCchh------hhHHHhhccCCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHhhcccC
Q 047609 108 GKVSGFHKALKLIVLGGVDPSIRP------EVWEFLLGCYAPGSTAEYRKQLRIARRERYE-----DLIKQCQVMHSSIG 176 (696)
Q Consensus 108 Grl~~~~~~~k~I~~GGvdpsiR~------EVWpFLLG~Y~~~ST~eER~~l~~~~r~eY~-----~lk~q~~~~~~~~~ 176 (696)
|-+-|...+..++..-||.|++-. ..|- ||||..-|.||+.+++++..++|. .|++|.+.|.....
T Consensus 239 g~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~---GY~P~g~t~ee~~~l~~~dp~~~~~~~~~Sm~rhv~Am~~~~~ 315 (557)
T 1uwk_A 239 ALHGNAAEILPELVKRGVRPDMVTDQTSAHDPLN---GYLPAGWTWEQYRDRAQTEPAAVVKAAKQSMAVHVQAMLDFQK 315 (557)
T ss_dssp EEESCHHHHHHHHHHHTCCCSEECCCSCTTCTTT---SCCCTTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHCCCCCCCCCCCccccCccc---ccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 434478888888888899888753 3333 999999999999999999888875 56778888865555
Q ss_pred CCcc
Q 047609 177 TGSL 180 (696)
Q Consensus 177 ~~~~ 180 (696)
.|..
T Consensus 316 ~G~~ 319 (557)
T 1uwk_A 316 QGVP 319 (557)
T ss_dssp TTCC
T ss_pred CCCe
Confidence 4433
No 12
>1uvq_C Orexin; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens}
Probab=21.37 E-value=43 Score=23.43 Aligned_cols=19 Identities=58% Similarity=1.136 Sum_probs=13.2
Q ss_pred EEEeeecCCCC--CCCCCCCC
Q 047609 35 FSFHCLTGGGG--GRGSGGGG 53 (696)
Q Consensus 35 ~~~~~~~~~~~--~~~~~~~~ 53 (696)
.+.-..||||. ||++|++|
T Consensus 13 VsWAaVtgggslvprgsgggg 33 (33)
T 1uvq_C 13 VSWAAVGGGGSLVPRGSGGGG 33 (33)
T ss_pred cceEEecCCceeeeccCCCCC
Confidence 45667788875 77777664
Done!