Query 047612
Match_columns 238
No_of_seqs 113 out of 225
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 22:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y39_A Nickel and cobalt resis 97.4 0.0027 9.3E-08 50.0 12.1 96 107-220 14-112 (118)
2 3itf_A Periplasmic adaptor pro 96.3 0.018 6.1E-07 46.8 8.8 93 110-221 42-135 (145)
3 3o39_A Periplasmic protein rel 95.0 0.033 1.1E-06 43.1 5.1 82 115-214 18-100 (108)
4 3oeo_A Spheroplast protein Y; 94.2 0.02 7E-07 45.8 2.3 94 109-220 29-122 (138)
5 3lay_A Zinc resistance-associa 90.7 2.7 9.3E-05 34.8 10.9 89 97-202 52-141 (175)
6 2ke4_A CDC42-interacting prote 72.5 23 0.00079 26.4 8.3 43 110-153 6-53 (98)
7 3h0g_D DNA-directed RNA polyme 39.4 25 0.00084 27.7 3.5 76 48-126 48-126 (135)
8 3v22_V Ribosome modulation fac 37.2 4.5 0.00015 28.1 -1.0 19 90-108 35-53 (61)
9 2jrm_A Ribosome modulation fac 35.4 5 0.00017 28.2 -1.0 16 87-103 33-48 (65)
10 3hd7_A Vesicle-associated memb 31.9 1.4E+02 0.0046 21.6 6.3 44 139-196 5-48 (91)
11 1yvl_A Signal transducer and a 28.8 4.4E+02 0.015 26.1 12.7 88 121-215 144-231 (683)
12 3nkh_A Integrase; alpha-fold, 28.4 76 0.0026 25.3 5.0 19 92-110 62-80 (244)
13 2kmf_A Photosystem II 11 kDa p 28.0 34 0.0012 26.4 2.5 94 27-140 18-114 (115)
14 1d3y_A DNA topoisomerase VI A 28.0 33 0.0011 30.3 2.7 47 82-130 196-248 (301)
15 1umd_A E1-alpha, 2-OXO acid de 27.3 2.3E+02 0.0078 25.2 8.4 67 19-87 285-351 (367)
16 2y6x_A PSB27, photosystem II 1 26.3 42 0.0014 25.8 2.7 95 27-141 14-111 (113)
17 3l9k_W Dynein intermediate cha 25.1 90 0.0031 19.4 3.6 26 115-140 1-33 (38)
18 2zzd_B Thiocyanate hydrolase s 24.9 1.3E+02 0.0045 24.3 5.6 38 20-64 107-144 (157)
19 2fmm_E Protein EMSY; ENT domai 23.8 88 0.003 24.7 4.2 30 28-61 38-67 (133)
20 1ykh_B RNA polymerase II holoe 23.7 1.2E+02 0.0041 23.5 5.0 95 49-145 6-116 (132)
21 1sfc_A VAMP 2, protein (synapt 23.7 2.1E+02 0.0073 20.8 6.7 25 172-197 50-74 (96)
22 1uz3_A EMSY protein; chromatin 23.4 78 0.0027 23.9 3.7 29 28-60 46-74 (102)
23 1bf5_A Signal transducer and a 23.3 5.1E+02 0.018 25.0 11.1 84 121-211 9-92 (575)
24 3b5n_A Synaptobrevin homolog 1 22.1 1.8E+02 0.006 19.2 6.7 44 140-197 3-46 (61)
25 1wa7_B TIP, hypothetical 28.7 22.0 41 0.0014 19.2 1.4 9 6-14 11-19 (26)
26 1yke_B RNA polymerase II holoe 20.2 1.9E+02 0.0067 22.9 5.7 39 109-147 80-118 (151)
27 1deq_A Fibrinogen (alpha chain 20.1 5.1E+02 0.017 23.8 9.1 28 124-151 52-79 (390)
No 1
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=97.42 E-value=0.0027 Score=50.01 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=73.9
Q ss_pred hhhccCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhCCCCccchhhhHHHHHHHHHHHHHHH
Q 047612 107 VVNESVKDLADEQRQRMDSLSVETRVEEKLLNDELARIQESVAGPTIMELARRRGRLGEWEMTEGVEVTESNLRASLESL 186 (238)
Q Consensus 107 Ll~~~l~~Lt~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~~~~~g~~g~~~~~~~~~~am~~kl~~L~~~ 186 (238)
+|-..|. ||++|...|+.+...-.....+|..+|...-..|++.... ..+ |++.+..|++..-.
T Consensus 14 ~vh~~L~-Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~-------~~~---~~p~V~aaid~~h~----- 77 (118)
T 2y39_A 14 ILHEAVP-LDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAK-------NPA---WSPEVEAATQEVER----- 77 (118)
T ss_dssp HHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCS---CCHHHHHHHHHHHH-----
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccc---cCHHHHHHHHHHHH-----
Confidence 3444555 9999999999999999999999999999999999987742 112 56667777753322
Q ss_pred HHHHhHHHHHH---HHHHhhcCCHHHHHHHHHHHHHH
Q 047612 187 VANADMLRTTT---TAKVVEILDPLQNVKFFTAVARL 220 (238)
Q Consensus 187 l~qAD~LR~~T---L~~~~~iLtp~Qaa~fL~A~~e~ 220 (238)
..-.|+..| +-.|..||||-|+..|=-.+.+-
T Consensus 78 --~mG~LQkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a 112 (118)
T 2y39_A 78 --AAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDA 112 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444588899 66678999999999997666543
No 2
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=96.34 E-value=0.018 Score=46.75 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=63.5
Q ss_pred ccCCCCcHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHhchhhHHHHHhhhCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 047612 110 ESVKDLADEQRQRMDSLSVETRVEEKLLND-ELARIQESVAGPTIMELARRRGRLGEWEMTEGVEVTESNLRASLESLVA 188 (238)
Q Consensus 110 ~~l~~Lt~~Ql~~i~~Lq~~t~~~E~aLs~-~ma~lQ~slad~~~~~~~~~~g~~g~~~~~~~~~~am~~kl~~L~~~l~ 188 (238)
..|. ||++|..+|..|....+.+...++. .+..++ +.+. .+. + -+.++...++.+...-.
T Consensus 42 ~~L~-LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~----~Li~------ad~-----f---Deaa~ral~~~~~~~~~ 102 (145)
T 3itf_A 42 DGIS-LTEHQRQQMRDLMQQARHEQPPVNVSELETMH----RLVT------AEN-----F---DENAVRAQAEKMANEQI 102 (145)
T ss_dssp TTCC-CCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH----HHHT------CSS-----C---CHHHHHHHHHHHHHHHH
T ss_pred ccCC-CCHHHHHHHHHHHHHHHHHhhhccHHHHHHHH----HHHc------cCC-----C---CHHHHHHHHHHHHHHHH
Confidence 3555 9999999999999888876544421 112211 1111 121 1 26666677777777777
Q ss_pred HHhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 047612 189 NADMLRTTTTAKVVEILDPLQNVKFFTAVARLQ 221 (238)
Q Consensus 189 qAD~LR~~TL~~~~~iLtp~Qaa~fL~A~~e~~ 221 (238)
+.--.|.++-.+|..||||-|-+.|-.-..+-.
T Consensus 103 e~~v~r~k~~~qiy~vLTPEQk~ql~e~~~~r~ 135 (145)
T 3itf_A 103 ARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRM 135 (145)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 777789999999999999999999876544433
No 3
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=94.99 E-value=0.033 Score=43.06 Aligned_cols=82 Identities=20% Similarity=0.204 Sum_probs=51.6
Q ss_pred CcHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHhchhhHHHHHhhhCCCCccchhhhHHHHHHHHHHHHHHHHHHHhHH
Q 047612 115 LADEQRQRMDSLSVETRVEEKLLN-DELARIQESVAGPTIMELARRRGRLGEWEMTEGVEVTESNLRASLESLVANADML 193 (238)
Q Consensus 115 Lt~~Ql~~i~~Lq~~t~~~E~aLs-~~ma~lQ~slad~~~~~~~~~~g~~g~~~~~~~~~~am~~kl~~L~~~l~qAD~L 193 (238)
||++|...|-.|....+..-+..+ .+...++ +.+. .+.. -+.++...++.+...-.+.---
T Consensus 18 LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~----~Li~------ad~F--------DEaaar~l~~~~~~~~~e~~v~ 79 (108)
T 3o39_A 18 LTDAQKQQIREIMKGQRDQMKRPPLEERRAMH----DIIA------SDTF--------DKAKAEAQIAKMEEQRKANMLA 79 (108)
T ss_dssp CCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHH----HHHS------SSSC--------CHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccHHHHHHHH----HHhc------cCCC--------CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887776533222 1112222 1111 1211 1445555555555555555557
Q ss_pred HHHHHHHHhhcCCHHHHHHHH
Q 047612 194 RTTTTAKVVEILDPLQNVKFF 214 (238)
Q Consensus 194 R~~TL~~~~~iLtp~Qaa~fL 214 (238)
|.++-.+|..||||-|-+.|-
T Consensus 80 ~~r~~~qmy~lLTPEQk~q~~ 100 (108)
T 3o39_A 80 HMETQNKIYNILTPEQKKQFN 100 (108)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 888999999999999998874
No 4
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=94.17 E-value=0.02 Score=45.80 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=59.3
Q ss_pred hccCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 047612 109 NESVKDLADEQRQRMDSLSVETRVEEKLLNDELARIQESVAGPTIMELARRRGRLGEWEMTEGVEVTESNLRASLESLVA 188 (238)
Q Consensus 109 ~~~l~~Lt~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~~~~~g~~g~~~~~~~~~~am~~kl~~L~~~l~ 188 (238)
...|. ||++|...|..|.+..+..-... +....+.+.+.+. .+.. -+.++...++.+...-.
T Consensus 29 ~~~L~-LT~eQ~~qir~i~~~~r~~~~~~---~~~~r~~l~~Li~------a~~f--------Deaav~al~~~~~~~~~ 90 (138)
T 3oeo_A 29 FKDLN-LTDAQKQQIREIMKGQRDQMKRP---PLEERRAMHDIIT------SDTF--------DKVKAEAQIAKMEEQRK 90 (138)
T ss_dssp -CCSC-CCTTHHHHHHHHHHHHSSSSCCC---CTTHHHHHHHHHT------CSSC--------CHHHHHHHHGGGSHHHH
T ss_pred HhcCC-CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc------cCCC--------CHHHHHHHHHHHHHHHH
Confidence 35666 99999999999987776532210 1111122222111 1211 25556566666666667
Q ss_pred HHhHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 047612 189 NADMLRTTTTAKVVEILDPLQNVKFFTAVARL 220 (238)
Q Consensus 189 qAD~LR~~TL~~~~~iLtp~Qaa~fL~A~~e~ 220 (238)
+.--.|.++..+|..||||-|-+.|---+.+-
T Consensus 91 e~~~~~~~~~~~~~~vLTPEQr~q~~~~~~kr 122 (138)
T 3oeo_A 91 ANMLAHMETQNKIYNILTPEQKKQFNANFEKR 122 (138)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 77778999999999999999999987765553
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=90.74 E-value=2.7 Score=34.81 Aligned_cols=89 Identities=11% Similarity=0.043 Sum_probs=53.0
Q ss_pred hCCChhhHHHhhhcc-CCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhCCCCccchhhhHHHH
Q 047612 97 AGFNPTLAFRVVNES-VKDLADEQRQRMDSLSVETRVEEKLLNDELARIQESVAGPTIMELARRRGRLGEWEMTEGVEVT 175 (238)
Q Consensus 97 GG~RPS~~l~Ll~~~-l~~Lt~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~~~~~g~~g~~~~~~~~~~a 175 (238)
|||.+-. =+..+ .-+||++|..++..|+++.+.+-.+|.+.|...++.+.+... .... -..+
T Consensus 52 g~~~~g~---gm~~q~~LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~------a~~~--------Deak 114 (175)
T 3lay_A 52 HHWGNND---GMWQQGGSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLT------ASSP--------DTAK 114 (175)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SSSC--------CHHH
T ss_pred CCCCCCC---CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCC--------CHHH
Confidence 6665552 11122 356999999999999999999999999998888888776553 1211 1444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 047612 176 ESNLRASLESLVANADMLRTTTTAKVV 202 (238)
Q Consensus 176 m~~kl~~L~~~l~qAD~LR~~TL~~~~ 202 (238)
++....++..+=.+-...|.+.-.+|.
T Consensus 115 I~aL~~Ei~~Lr~qL~~~R~k~~~em~ 141 (175)
T 3lay_A 115 INAVAKEMESLGQKLDEQRVKRDVAMA 141 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555566667777777664
No 6
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=72.49 E-value=23 Score=26.44 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=34.5
Q ss_pred ccCCCCcHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHhchhhH
Q 047612 110 ESVKDLADEQR-----QRMDSLSVETRVEEKLLNDELARIQESVAGPTI 153 (238)
Q Consensus 110 ~~l~~Lt~~Ql-----~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~ 153 (238)
.++++|+++|. .+|+.|+..+.++.++ .+||.+++......+.
T Consensus 6 ~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~ 53 (98)
T 2ke4_A 6 EDFSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQ 53 (98)
T ss_dssp SCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGG
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCc
Confidence 46788999986 4588888888888877 7788888888888775
No 7
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=39.37 E-value=25 Score=27.68 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhchhhhcCCCCCChhHHHHHHhhCCChhhH--HHhhhccCCC-CcHHHHHHHH
Q 047612 48 DEDLKELVKRVLAHYQQYYQEKSKVAQHNVFLLFAPTWFTPFEQTFFWIAGFNPTLA--FRVVNESVKD-LADEQRQRMD 124 (238)
Q Consensus 48 d~eL~~LV~~~l~Hy~~y~~~K~~aA~~DV~~~~s~~W~tp~Er~flWiGG~RPS~~--l~Ll~~~l~~-Lt~~Ql~~i~ 124 (238)
+.++..++.+.+.+....-+.|..-+-..|-.+++. =.+++|.+- ||-.+|..+ .+.|.|+++. ++++++..|-
T Consensus 48 ~~~~~~v~~kTl~Yl~~Fsk~~~~e~~~~v~~lL~~-~L~~fEia~--L~NL~P~t~dEak~LIpsL~~r~~de~L~~IL 124 (135)
T 3h0g_D 48 EIPMTDVMKKTVAYFNVFARFKTAEATYACERILGN-RFHKFERAQ--LGTLCCEDAEEARTLIPSLANKIDDQNLQGIL 124 (135)
T ss_dssp CCCCTTHHHHHHHHHHTTCTTCSHHHHHHHHHHCCC-CSCHHHHHH--HHHHCCCCHHHHHHHCGGGTTTSCSHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh-cCCHHHHHH--HccCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Confidence 345677888888877777666767777788888888 788999977 899999986 6778899885 8999988874
Q ss_pred HH
Q 047612 125 SL 126 (238)
Q Consensus 125 ~L 126 (238)
+.
T Consensus 125 ~~ 126 (135)
T 3h0g_D 125 DE 126 (135)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 8
>3v22_V Ribosome modulation factor; stress response, small subunit H movement, stationary phase, ribosome hibernation; 3.00A {Escherichia coli} PDB: 3v24_V
Probab=37.22 E-value=4.5 Score=28.07 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=13.1
Q ss_pred HHHHHHhhCCChhhHHHhh
Q 047612 90 EQTFFWIAGFNPTLAFRVV 108 (238)
Q Consensus 90 Er~flWiGG~RPS~~l~Ll 108 (238)
+-.-.||||||-..--+++
T Consensus 35 ~~r~~Wl~GWReg~~d~~~ 53 (61)
T 3v22_V 35 NQRSQWLGGWREAMADRVV 53 (61)
T ss_dssp HHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhhhhhH
Confidence 3456899999976554444
No 9
>2jrm_A Ribosome modulation factor; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Vibrio parahaemolyticus}
Probab=35.35 E-value=5 Score=28.15 Aligned_cols=16 Identities=13% Similarity=0.574 Sum_probs=10.6
Q ss_pred ChhHHHHHHhhCCChhh
Q 047612 87 TPFEQTFFWIAGFNPTL 103 (238)
Q Consensus 87 tp~Er~flWiGG~RPS~ 103 (238)
+.--|. .|+||||=-.
T Consensus 33 ~~~~r~-~Wl~GWRegr 48 (65)
T 2jrm_A 33 QVDARS-YWLGGWRDAR 48 (65)
T ss_dssp SHHHHH-HHHHHHHHHH
T ss_pred CcHHHH-HHHHHHHHHH
Confidence 333344 8999998643
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=31.90 E-value=1.4e+02 Score=21.56 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=24.5
Q ss_pred HHHHHHHHHhchhhHHHHHhhhCCCCccchhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047612 139 DELARIQESVAGPTIMELARRRGRLGEWEMTEGVEVTESNLRASLESLVANADMLRTT 196 (238)
Q Consensus 139 ~~ma~lQ~slad~~~~~~~~~~g~~g~~~~~~~~~~am~~kl~~L~~~l~qAD~LR~~ 196 (238)
+.+.++|..+.+.... |.+.++..+ .+-+.|+.+..++|+|..+
T Consensus 5 d~l~~vq~ev~evk~i-------------M~~NI~kvL-~RgekL~~L~~kt~~L~~~ 48 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDI-------------MRVNVDKVL-ERDQKLSELDDRADALQAG 48 (91)
T ss_dssp HHHHHHHHHHHHHHHH-------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHH-HccchHHHHHHHHHHHHHH
Confidence 4566666666665421 222355555 4666666666666666543
No 11
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=28.77 E-value=4.4e+02 Score=26.06 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=46.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhCCCCccchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047612 121 QRMDSLSVETRVEEKLLNDELARIQESVAGPTIMELARRRGRLGEWEMTEGVEVTESNLRASLESLVANADMLRTTTTAK 200 (238)
Q Consensus 121 ~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~~~~~g~~g~~~~~~~~~~am~~kl~~L~~~l~qAD~LR~~TL~~ 200 (238)
.++.+|+..++..|..+. .|+.+|+.+.=.--.-.+......| .....++.+...|...+..=|..|...+.+
T Consensus 144 ~~v~~lr~~~q~~e~~ik-~Le~~Qe~f~~~y~~~~~~~~~~~~------~~~~~~~~~~~~lq~~~~~l~~~R~~~~~k 216 (683)
T 1yvl_A 144 SKVRNVKDKVMCIEHEIK-SLEDLQDEYDFKCKTLQNREHETNG------VAKSDQKQEQLLLKKMYLMLDNKRKEVVHK 216 (683)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCC------------CHHHHGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhcc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557778888888887664 5778888665211000000000001 112223333344666666677777777777
Q ss_pred HhhcCCHHHHHHHHH
Q 047612 201 VVEILDPLQNVKFFT 215 (238)
Q Consensus 201 ~~~iLtp~Qaa~fL~ 215 (238)
+.+++...+...-.+
T Consensus 217 ~~~~l~~~~~lq~~l 231 (683)
T 1yvl_A 217 IIELLNVTELTQNAL 231 (683)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 766655555444433
No 12
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=28.42 E-value=76 Score=25.32 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.1
Q ss_pred HHHHhhCCChhhHHHhhhc
Q 047612 92 TFFWIAGFNPTLAFRVVNE 110 (238)
Q Consensus 92 ~flWiGG~RPS~~l~Ll~~ 110 (238)
.|++..|.|+++++.|-..
T Consensus 62 ~l~~~tGlR~~E~~~L~~~ 80 (244)
T 3nkh_A 62 EFQALNGMRIGEMLAIQNE 80 (244)
T ss_dssp HHHHHHCCCHHHHHTCBGG
T ss_pred HHHHHhCchHHHHhcCcHH
Confidence 4677799999999987633
No 13
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=27.99 E-value=34 Score=26.36 Aligned_cols=94 Identities=13% Similarity=0.236 Sum_probs=51.0
Q ss_pred HHhhhHHHHHHHHhhhcCCCChhhHHHHH---HHHHHHHHHHHHHHHhhhhhchhhhcCCCCCChhHHHHHHhhCCChhh
Q 047612 27 VRQEHLLDELISAQENHHQSRDEDLKELV---KRVLAHYQQYYQEKSKVAQHNVFLLFAPTWFTPFEQTFFWIAGFNPTL 103 (238)
Q Consensus 27 ~eq~~~l~eLr~al~~~~~~~d~eL~~LV---~~~l~Hy~~y~~~K~~aA~~DV~~~~s~~W~tp~Er~flWiGG~RPS~ 103 (238)
+.--..+..||.++... .++...+..+ .+-++.|-..|+-....++..-|.- ++.++-=|+|+=-|
T Consensus 18 ~dT~~Vv~~lr~~l~l~--~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~t--------m~tAlNaLAGHY~s- 86 (115)
T 2kmf_A 18 QDTLTVIATLREAIDLP--QDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTT--------MQTALNSLAGYYTS- 86 (115)
T ss_dssp HHHHHHHHHHHHHHHSC--TTCTTHHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHH--------HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHH--------HHHHHHHHHHHHhh-
Confidence 44456678999998511 2233333333 3445555556665555555544432 22222222221111
Q ss_pred HHHhhhccCCCCcHHHHHHHHHHhHHHHHHHHHHHHH
Q 047612 104 AFRVVNESVKDLADEQRQRMDSLSVETRVEEKLLNDE 140 (238)
Q Consensus 104 ~l~Ll~~~l~~Lt~~Ql~~i~~Lq~~t~~~E~aLs~~ 140 (238)
-+ -.||.+.-.. .|.++..++|.+|.+|
T Consensus 87 -----~g-~~PlPek~k~---Rl~~el~~AE~al~rg 114 (115)
T 2kmf_A 87 -----YG-ARPIPEKLKK---RLQLEFTQAERSIERG 114 (115)
T ss_dssp -----HS-SCCCCHHHHH---HHHHHHHHHHHHHHHT
T ss_pred -----cC-CCCCCHHHHH---HHHHHHHHHHHHHHcc
Confidence 13 6688886554 4567888999999875
No 14
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1
Probab=27.95 E-value=33 Score=30.30 Aligned_cols=47 Identities=9% Similarity=-0.055 Sum_probs=29.7
Q ss_pred CCCCCChhHH------HHHHhhCCChhhHHHhhhccCCCCcHHHHHHHHHHhHHH
Q 047612 82 APTWFTPFEQ------TFFWIAGFNPTLAFRVVNESVKDLADEQRQRMDSLSVET 130 (238)
Q Consensus 82 s~~W~tp~Er------~flWiGG~RPS~~l~Ll~~~l~~Lt~~Ql~~i~~Lq~~t 130 (238)
.|..+.+.|. .+-||| .+||++.+.-.+ ..|||+....++.++-..-
T Consensus 196 ~GS~~~~~~~~~l~~p~~~wlG-v~~sdi~~~~~~-~~~Lt~~D~~~l~~ll~~~ 248 (301)
T 1d3y_A 196 VGSGKAIHLADKLSIPAARLIG-VTPQDIIDYDLP-THPLKEQDIKRIKDGLKND 248 (301)
T ss_dssp C---------CTTCCTTCEEEE-SCHHHHHHTTCC-CEECCHHHHHHHHHHHHHC
T ss_pred hCchhhccccccccCCccEEcC-CCHHHHHhcccc-cCcCCHHHHHHHHHHhhCc
Confidence 4666665554 468998 999998875444 5689999999998887543
No 15
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=27.34 E-value=2.3e+02 Score=25.17 Aligned_cols=67 Identities=9% Similarity=0.071 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhchhhhcCCCCCC
Q 047612 19 ETFFRAWLVRQEHLLDELISAQENHHQSRDEDLKELVKRVLAHYQQYYQEKSKVAQHNVFLLFAPTWFT 87 (238)
Q Consensus 19 ~~~Y~~W~~eq~~~l~eLr~al~~~~~~~d~eL~~LV~~~l~Hy~~y~~~K~~aA~~DV~~~~s~~W~t 87 (238)
..+|+.|.. ..-+..++.-|....-.+++++..+.+.+-...++.+..-.....-|+-.+|...|..
T Consensus 285 ~~e~~~~~~--~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~ 351 (367)
T 1umd_A 285 KEEVAFWRK--KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAE 351 (367)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGGTTSSSS
T ss_pred HHHHHHHHc--CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcCC
Confidence 578889975 4667788888764444578899999999999988877653333445555555555554
No 16
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=26.27 E-value=42 Score=25.82 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=51.4
Q ss_pred HHhhhHHHHHHHHhhhcCCCChhhHH---HHHHHHHHHHHHHHHHHHhhhhhchhhhcCCCCCChhHHHHHHhhCCChhh
Q 047612 27 VRQEHLLDELISAQENHHQSRDEDLK---ELVKRVLAHYQQYYQEKSKVAQHNVFLLFAPTWFTPFEQTFFWIAGFNPTL 103 (238)
Q Consensus 27 ~eq~~~l~eLr~al~~~~~~~d~eL~---~LV~~~l~Hy~~y~~~K~~aA~~DV~~~~s~~W~tp~Er~flWiGG~RPS~ 103 (238)
+.--..+..||.++... .++.... .-..+-++.|-..|+-....++..-|.- +..++-=|+|+=-|
T Consensus 14 ~dT~~Vv~~lr~~l~l~--~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sftt--------m~tAlNaLAGHY~s- 82 (113)
T 2y6x_A 14 EDTLALISSLREAIALP--ENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMT--------MQTALNSLAGHYSS- 82 (113)
T ss_dssp HHHHHHHHHHHHHHHSC--TTCTTHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHH--------HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHH--------HHHHHHHHHHHHhh-
Confidence 33445678899998521 2233333 3333445555556665545555544422 22222222221111
Q ss_pred HHHhhhccCCCCcHHHHHHHHHHhHHHHHHHHHHHHHH
Q 047612 104 AFRVVNESVKDLADEQRQRMDSLSVETRVEEKLLNDEL 141 (238)
Q Consensus 104 ~l~Ll~~~l~~Lt~~Ql~~i~~Lq~~t~~~E~aLs~~m 141 (238)
-| -.||.+.-.. .|.++..++|.+|.+|-
T Consensus 83 -----~g-~~PlPek~k~---Rl~~el~~AE~al~Rg~ 111 (113)
T 2y6x_A 83 -----YP-NRPLPEKLKA---RLEQEFKQVELALDREA 111 (113)
T ss_dssp -----CT-TSCCCHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred -----cC-CCCCCHHHHH---HHHHHHHHHHHHHHhcc
Confidence 12 6688886554 45678899999999884
No 17
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=25.07 E-value=90 Score=19.40 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=18.8
Q ss_pred CcHHHHHHH-------HHHhHHHHHHHHHHHHH
Q 047612 115 LADEQRQRM-------DSLSVETRVEEKLLNDE 140 (238)
Q Consensus 115 Lt~~Ql~~i-------~~Lq~~t~~~E~aLs~~ 140 (238)
||+++...| .=+.++++..|+||++.
T Consensus 1 LseEEk~~I~~S~~F~~F~~rsskviERAL~e~ 33 (38)
T 3l9k_W 1 LSEEQKQMIILSENFQRFVVRAGRVIERALSEN 33 (38)
T ss_dssp CCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHhcCHHHHHHHHHHHHHHHHHHccc
Confidence 455655554 34788999999999865
No 18
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=24.90 E-value=1.3e+02 Score=24.27 Aligned_cols=38 Identities=11% Similarity=0.319 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 047612 20 TFFRAWLVRQEHLLDELISAQENHHQSRDEDLKELVKRVLAHYQQ 64 (238)
Q Consensus 20 ~~Y~~W~~eq~~~l~eLr~al~~~~~~~d~eL~~LV~~~l~Hy~~ 64 (238)
.+|++|+.-..+.+.+ ..-.+..||..-++.+.+.|..
T Consensus 107 sYYe~WL~ALe~lLve-------kGvit~~EL~ar~aEv~ar~~~ 144 (157)
T 2zzd_B 107 PYYGRWLLTAARILVD-------KQFVTLTELHNKIVEMRERVAS 144 (157)
T ss_dssp CHHHHHHHHHHHHHHH-------TTSSCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhhhc
Confidence 5899999988877765 2335788898888888776653
No 19
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=23.76 E-value=88 Score=24.70 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=24.7
Q ss_pred HhhhHHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 047612 28 RQEHLLDELISAQENHHQSRDEDLKELVKRVLAH 61 (238)
Q Consensus 28 eq~~~l~eLr~al~~~~~~~d~eL~~LV~~~l~H 61 (238)
++...+.+||..++ +++++.+..+.++.+.
T Consensus 38 eke~LLt~LR~~L~----IS~eeH~~elrr~~sD 67 (133)
T 2fmm_E 38 EKKDLLGELSKVLS----ISTERHRAEVRRAVND 67 (133)
T ss_dssp HHHHHHHHHHHHTT----CCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC----CCcHHHHHHHHHhhhH
Confidence 67888999999995 7888888888777654
No 20
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.70 E-value=1.2e+02 Score=23.50 Aligned_cols=95 Identities=9% Similarity=-0.024 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhchhhhc--CCCCCChhH-HHHHHhhCCChhhH----------HHhh---hccC
Q 047612 49 EDLKELVKRVLAHYQQYYQEKSKVAQHNVFLLF--APTWFTPFE-QTFFWIAGFNPTLA----------FRVV---NESV 112 (238)
Q Consensus 49 ~eL~~LV~~~l~Hy~~y~~~K~~aA~~DV~~~~--s~~W~tp~E-r~flWiGG~RPS~~----------l~Ll---~~~l 112 (238)
..|+.-|+....||......-..-|.-..|.=. .++..++.. .+=.|-- .+.++ |..| .|.+
T Consensus 6 TQLQd~ldqla~~f~nsig~Lq~~a~p~~~~~~~~~~~~~~~~~~~~~~f~~--~~~ela~dli~k~kqIe~LIdsLP~~ 83 (132)
T 1ykh_B 6 TQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSN--TIDELSTDIILKTRQINKLIDSLPGV 83 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCC---------------CCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCccCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 468888999999988888776544432222100 011111000 0000000 01111 1222 4566
Q ss_pred CCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047612 113 KDLADEQRQRMDSLSVETRVEEKLLNDELARIQ 145 (238)
Q Consensus 113 ~~Lt~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ 145 (238)
+.-.+.|..+|..|+.+.+.+|..+-+.+.+-.
T Consensus 84 ~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e 116 (132)
T 1ykh_B 84 DVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 116 (132)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 656678999999999999999988877665543
No 21
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.67 E-value=2.1e+02 Score=20.76 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047612 172 VEVTESNLRASLESLVANADMLRTTT 197 (238)
Q Consensus 172 ~~~am~~kl~~L~~~l~qAD~LR~~T 197 (238)
++..+ .+-+.|..++.++|+|...+
T Consensus 50 I~kvL-eRGEkLd~L~dkse~L~~~S 74 (96)
T 1sfc_A 50 VDKVL-ERDQKLSELDDRADALQAGA 74 (96)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HhhhHHHHHHHHHHHHHHHH
Confidence 55555 57777777778887776543
No 22
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=23.42 E-value=78 Score=23.90 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=23.3
Q ss_pred HhhhHHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 047612 28 RQEHLLDELISAQENHHQSRDEDLKELVKRVLA 60 (238)
Q Consensus 28 eq~~~l~eLr~al~~~~~~~d~eL~~LV~~~l~ 60 (238)
++...+.+||..++ +++++.+..+.++.+
T Consensus 46 eke~LLt~LR~~L~----IS~eeH~~elrr~~s 74 (102)
T 1uz3_A 46 EKKDLLGELSKVLS----ISTERHRAEVRRAVN 74 (102)
T ss_dssp HHHHHHHHHHHHTT----CCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC----CCcHHHHHHHHHhcc
Confidence 67888999999995 788888888777654
No 23
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=23.32 E-value=5.1e+02 Score=25.03 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=41.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhCCCCccchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047612 121 QRMDSLSVETRVEEKLLNDELARIQESVAGPTIMELARRRGRLGEWEMTEGVEVTESNLRASLESLVANADMLRTTTTAK 200 (238)
Q Consensus 121 ~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~~~~~~~~~g~~g~~~~~~~~~~am~~kl~~L~~~l~qAD~LR~~TL~~ 200 (238)
.+|.+|+.+++..|..+- .|+.+|+.+.=.--.-........| .....++.+...|...+..=|..|...+.+
T Consensus 9 ~~~~~l~~~~q~~e~~~k-~Le~~Qe~f~~~y~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~l~~~R~~~~~~ 81 (575)
T 1bf5_A 9 SKVRNVKDKVMCIEHEIK-SLEDLQDEYDFKCKTLQNREHETNG------VAKSDQKQEQLLLKKMYLMLDNKRKEVVHK 81 (575)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTC--------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHhhhhhhcc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999988874 5788887665432110011001111 122333334444555566666666666665
Q ss_pred HhhcCCHHHHH
Q 047612 201 VVEILDPLQNV 211 (238)
Q Consensus 201 ~~~iLtp~Qaa 211 (238)
+.+++...+..
T Consensus 82 ~~~~~~~~~~l 92 (575)
T 1bf5_A 82 IIELLNVTELT 92 (575)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55554443333
No 24
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=22.13 E-value=1.8e+02 Score=19.21 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=30.4
Q ss_pred HHHHHHHHhchhhHHHHHhhhCCCCccchhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047612 140 ELARIQESVAGPTIMELARRRGRLGEWEMTEGVEVTESNLRASLESLVANADMLRTTT 197 (238)
Q Consensus 140 ~ma~lQ~slad~~~~~~~~~~g~~g~~~~~~~~~~am~~kl~~L~~~l~qAD~LR~~T 197 (238)
.+.++|..+.+.... |..-++..+ .+-+.|..++.++++|...+
T Consensus 3 ~l~~vq~~l~evk~i-------------M~~NI~~vl-~RgekLd~L~~ks~~L~~~s 46 (61)
T 3b5n_A 3 RTAELQAEIDDTVGI-------------MRDNINKVA-ERGERLTSIEDKADNLAVSA 46 (61)
T ss_dssp HHHHHHHHHHHHHHH-------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHH-HhhhhHHHHHHHHHHHHHHH
Confidence 466677777775431 223366667 68889999999999987654
No 25
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=22.05 E-value=41 Score=19.15 Aligned_cols=9 Identities=22% Similarity=0.058 Sum_probs=6.8
Q ss_pred CCCCCCCch
Q 047612 6 RARYNNDDN 14 (238)
Q Consensus 6 ~~~~~~~~~ 14 (238)
|||+.|...
T Consensus 11 PpRPaNLG~ 19 (26)
T 1wa7_B 11 PPRPANLGE 19 (26)
T ss_dssp CCCTTSTTT
T ss_pred CCCcccccc
Confidence 888888754
No 26
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.24 E-value=1.9e+02 Score=22.88 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=30.0
Q ss_pred hccCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 047612 109 NESVKDLADEQRQRMDSLSVETRVEEKLLNDELARIQES 147 (238)
Q Consensus 109 ~~~l~~Lt~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~s 147 (238)
.|.++.-.+.|..+|..|+.+.+.+|..+.+.+.+-..-
T Consensus 80 LPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~l 118 (151)
T 1yke_B 80 LPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 118 (151)
T ss_dssp CTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665567899999999999999998887766554433
No 27
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.13 E-value=5.1e+02 Score=23.84 Aligned_cols=28 Identities=4% Similarity=0.044 Sum_probs=18.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhchh
Q 047612 124 DSLSVETRVEEKLLNDELARIQESVAGP 151 (238)
Q Consensus 124 ~~Lq~~t~~~E~aLs~~ma~lQ~slad~ 151 (238)
|.||..+...|..+...+++|.+.|++.
T Consensus 52 CrLqg~Ldk~er~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 52 CRMKGLIDEVDQDFTSRINKLRDSLFNY 79 (390)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666654
Done!