Query 047612
Match_columns 238
No_of_seqs 113 out of 225
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 22:56:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047612.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047612hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c35a1 a.60.8.2 (A:14-142) RN 38.4 14 0.001 26.7 3.9 78 48-127 41-121 (129)
2 d1olma1 a.5.3.1 (A:1-75) Super 35.9 11 0.0008 24.5 2.6 22 109-130 2-23 (75)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 28.7 53 0.0039 23.6 5.7 38 109-146 79-116 (129)
4 d1b33n_ d.30.1.1 (N:) Allophyc 27.0 16 0.0011 23.7 2.0 13 22-34 33-45 (67)
5 d1uuja_ a.221.1.1 (A:) Lissenc 24.9 28 0.002 23.3 3.1 19 204-222 1-19 (76)
6 d1jeqa1 a.140.2.1 (A:559-609) 24.6 25 0.0018 21.6 2.7 33 32-64 19-51 (51)
7 d1uz3a1 a.283.1.1 (A:13-102) E 22.8 40 0.0029 23.2 3.7 30 28-61 34-63 (90)
8 d1a0pa2 d.163.1.1 (A:111-292) 22.6 13 0.00094 26.5 1.1 21 92-112 30-50 (182)
9 d1h75a_ c.47.1.1 (A:) Glutared 21.3 11 0.0008 24.2 0.4 23 75-106 49-71 (76)
10 d1zbdb_ g.50.1.1 (B:) Effector 20.3 51 0.0037 23.1 4.1 39 113-151 1-39 (124)
No 1
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.41 E-value=14 Score=26.66 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhchhhhcCCCCCChhHHHHHHhhCCChhhH--HHhhhccCC-CCcHHHHHHHH
Q 047612 48 DEDLKELVKRVLAHYQQYYQEKSKVAQHNVFLLFAPTWFTPFEQTFFWIAGFNPTLA--FRVVNESVK-DLADEQRQRMD 124 (238)
Q Consensus 48 d~eL~~LV~~~l~Hy~~y~~~K~~aA~~DV~~~~s~~W~tp~Er~flWiGG~RPS~~--l~Ll~~~l~-~Lt~~Ql~~i~ 124 (238)
+.++..+..+.+.|-...-+.+..-+...|..+++..=.++.|.+ =|+..+|+.+ ++.|.++++ .+|++++..|=
T Consensus 41 ~~~l~~~~~ktl~Yl~~fak~~~~es~~~~~~ll~~~~L~~~E~~--~i~Nl~P~~~~El~~li~~l~~r~see~l~~iL 118 (129)
T d2c35a1 41 EQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELA--CLANLCPETAEESKALIPSLEGRFEDEELQQIL 118 (129)
T ss_dssp SCCCCHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHTSSCCHHHHH--HHHHHCCSSHHHHHHHCGGGTTTSCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcccCCCHHHHH--HHhCCCCCCHHHHHHHHHHhccCCCHHHHHHHH
Confidence 456788888888866554445667777888888888778999987 5788999886 667788886 68999988874
Q ss_pred HHh
Q 047612 125 SLS 127 (238)
Q Consensus 125 ~Lq 127 (238)
+.-
T Consensus 119 d~l 121 (129)
T d2c35a1 119 DDI 121 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 2
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.88 E-value=11 Score=24.49 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=18.9
Q ss_pred hccCCCCcHHHHHHHHHHhHHH
Q 047612 109 NESVKDLADEQRQRMDSLSVET 130 (238)
Q Consensus 109 ~~~l~~Lt~~Ql~~i~~Lq~~t 130 (238)
.++++.||++|...|.+|+..+
T Consensus 2 ~g~~gelt~~q~~~l~elr~~l 23 (75)
T d1olma1 2 SGRVGDLSPRQKEALAKFRENV 23 (75)
T ss_dssp CSBTTBCCHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHH
Confidence 4789999999999999998765
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.68 E-value=53 Score=23.62 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=29.4
Q ss_pred hccCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 047612 109 NESVKDLADEQRQRMDSLSVETRVEEKLLNDELARIQE 146 (238)
Q Consensus 109 ~~~l~~Lt~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~ 146 (238)
.|.++.-.+.|+.+|..|+.+.+.+|..+.+.+.+...
T Consensus 79 LP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ 116 (129)
T d1ykhb1 79 LPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEK 116 (129)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556789999999999999999888776655443
No 4
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=27.04 E-value=16 Score=23.70 Aligned_cols=13 Identities=15% Similarity=0.680 Sum_probs=11.1
Q ss_pred HHHHHHHhhhHHH
Q 047612 22 FRAWLVRQEHLLD 34 (238)
Q Consensus 22 Y~~W~~eq~~~l~ 34 (238)
|+.|+.||++.+.
T Consensus 33 y~nWf~EQQrI~K 45 (67)
T d1b33n_ 33 YENWFREQQRIQK 45 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8999999998764
No 5
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.88 E-value=28 Score=23.26 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 047612 204 ILDPLQNVKFFTAVARLQL 222 (238)
Q Consensus 204 iLtp~Qaa~fL~A~~e~~~ 222 (238)
|||++|+.+-=-|+.+|..
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~ 19 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLR 19 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7999999998888888875
No 6
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.59 E-value=25 Score=21.56 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 047612 32 LLDELISAQENHHQSRDEDLKELVKRVLAHYQQ 64 (238)
Q Consensus 32 ~l~eLr~al~~~~~~~d~eL~~LV~~~l~Hy~~ 64 (238)
.+.+|+..++...-..-..=..||+++..|+++
T Consensus 19 tV~~LK~~lk~~gL~~sGkKa~Li~Ri~~~l~e 51 (51)
T d1jeqa1 19 TVPMLKEACRAYGLKSGLKKQELLEALTKHFQD 51 (51)
T ss_dssp CHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhC
Confidence 468899887632211224567899999999863
No 7
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.83 E-value=40 Score=23.20 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=24.5
Q ss_pred HhhhHHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 047612 28 RQEHLLDELISAQENHHQSRDEDLKELVKRVLAH 61 (238)
Q Consensus 28 eq~~~l~eLr~al~~~~~~~d~eL~~LV~~~l~H 61 (238)
++...+.+||..++ +++++.+..+.++.+.
T Consensus 34 eke~lLt~LR~~L~----IS~eeHr~elrr~~~D 63 (90)
T d1uz3a1 34 EKKDLLGELSKVLS----ISTERHRAEVRRAVND 63 (90)
T ss_dssp HHHHHHHHHHHHTT----CCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC----CCcHHHHHHHHHhccH
Confidence 67788899999995 7888888888887653
No 8
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=22.58 E-value=13 Score=26.54 Aligned_cols=21 Identities=5% Similarity=0.208 Sum_probs=16.5
Q ss_pred HHHHhhCCChhhHHHhhhccC
Q 047612 92 TFFWIAGFNPTLAFRVVNESV 112 (238)
Q Consensus 92 ~flWiGG~RPS~~l~Ll~~~l 112 (238)
.|+|..|+||++++.|-..++
T Consensus 30 ~l~~~tG~R~~ei~~L~~~~i 50 (182)
T d1a0pa2 30 EVLYATGLRVSELVGLTMSDI 50 (182)
T ss_dssp HHHHHHCCCHHHHTTCBGGGE
T ss_pred HHHHHhCCccCCcccchhhhh
Confidence 467889999999998874443
No 9
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=21.33 E-value=11 Score=24.17 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=15.4
Q ss_pred hchhhhcCCCCCChhHHHHHHhhCCChhhHHH
Q 047612 75 HNVFLLFAPTWFTPFEQTFFWIAGFNPTLAFR 106 (238)
Q Consensus 75 ~DV~~~~s~~W~tp~Er~flWiGG~RPS~~l~ 106 (238)
.-|+.++-+. -+||||||-.+=+
T Consensus 49 ~tvP~i~i~~---------~~i~Gf~~d~i~~ 71 (76)
T d1h75a_ 49 RQLPVVIAGD---------LSWSGFRPDMINR 71 (76)
T ss_dssp CSSCEEEETT---------EEEESCCHHHHGG
T ss_pred CCCCEEEECC---------EEEECCCHHHHHH
Confidence 3466666443 3689999987644
No 10
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.30 E-value=51 Score=23.11 Aligned_cols=39 Identities=13% Similarity=0.347 Sum_probs=29.2
Q ss_pred CCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhchh
Q 047612 113 KDLADEQRQRMDSLSVETRVEEKLLNDELARIQESVAGP 151 (238)
Q Consensus 113 ~~Lt~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~ 151 (238)
++||+++...|.++-++-...+..-.+++.++.+.+.+.
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~ 39 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETM 39 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888887777777777666777788887777664
Done!