BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047613
         (224 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QNE|A Chain A, Crystal Structure Of Putative Methyltransferase
           (Zp_00558420.1) From Desulfitobacterium Hafniense Y51 At
           2.30 A Resolution
 pdb|2QNE|B Chain B, Crystal Structure Of Putative Methyltransferase
           (Zp_00558420.1) From Desulfitobacterium Hafniense Y51 At
           2.30 A Resolution
          Length = 495

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 14/76 (18%)

Query: 68  INNLELLDGVSYEGTIRVNVPII--SLKNLSNARGVNLS-GSP-----LTFSARSNRFTA 119
           + N E+L G+S   +I    P+I  S   LS+ R  +LS GSP     ++ SA+  RF  
Sbjct: 265 LQNAEVLAGISLAQSINPGTPVIYGSTSALSDXRSGSLSIGSPECALFISASAQLARFYG 324

Query: 120 I------GCDDYDTID 129
           +      G +D  T+D
Sbjct: 325 VPSRSGGGLNDSKTVD 340


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,485,615
Number of Sequences: 62578
Number of extensions: 255958
Number of successful extensions: 502
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 4
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)