Query 047613
Match_columns 224
No_of_seqs 161 out of 854
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 22:58:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rm2_L Thrombin light chain; s 33.2 16 0.00053 21.8 1.1 15 37-51 2-17 (36)
2 2jr3_A Pelovaterin; beta-defen 23.3 22 0.00076 21.1 0.5 11 151-161 30-41 (42)
3 1ccv_A AMCI, chymotrypsin inhi 13.7 55 0.0019 20.6 0.7 29 22-51 14-44 (56)
4 1hx2_A BSTI; beta-sheet disulf 13.5 59 0.002 20.6 0.8 28 21-48 14-43 (60)
5 3zyj_A Leucine-rich repeat-con 11.8 67 0.0023 28.0 0.9 12 17-28 28-39 (440)
6 1jy2_P Fibrinogen gamma-B chai 10.2 24 0.00081 22.3 -1.9 6 24-29 19-24 (48)
7 1etr_L Epsilon-thrombin; serin 8.4 1.7E+02 0.0059 18.4 1.7 18 34-51 12-30 (49)
8 1vyc_A Bucain, neurotoxin; sna 7.0 1.4E+02 0.0049 19.3 0.8 24 134-161 37-60 (65)
9 2ljo_A Non-specific lipid-tran 6.6 1.6E+02 0.0055 20.6 1.0 19 25-44 71-89 (93)
10 1ata_A Ascaris trypsin inhibit 6.4 2E+02 0.007 18.4 1.4 27 23-51 17-48 (62)
No 1
>3rm2_L Thrombin light chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_L* 1a3e_L* 1a46_L* 1a4w_L* 1a5g_L* 1a61_L* 1abi_L* 1abj_L* 1ad8_L* 1ae8_L* 1afe_L* 1a3b_L* 1ai8_L* 1aix_L* 1awf_L* 1awh_A* 1ay6_L* 1b5g_L* 1b7x_A 1ba8_A* ...
Probab=33.18 E-value=16 Score=21.83 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=8.5
Q ss_pred CCCCC-CCCCCCCCeE
Q 047613 37 FGIGK-GCYFDKSFKV 51 (224)
Q Consensus 37 FGig~-gC~~~~gF~l 51 (224)
||.|+ +|+..+.|+-
T Consensus 2 fG~ge~~CG~rPlfEk 17 (36)
T 3rm2_L 2 FGSGEADCGLRPLFEK 17 (36)
T ss_dssp ----CTTTTCCTTTGG
T ss_pred CcccccccccCchhhh
Confidence 78875 8998878873
No 2
>2jr3_A Pelovaterin; beta-defensin like peptide, chinese SOFT-shelled turtle eggshell, antibacterial peptide, eggshell matrix; NMR {Pelodiscus sinensis}
Probab=23.29 E-value=22 Score=21.11 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=8.1
Q ss_pred CCCCC-ccceec
Q 047613 151 RVCYD-FLCALA 161 (224)
Q Consensus 151 ~~CsG-~GCCq~ 161 (224)
-.|+| .|||++
T Consensus 30 vgcsggfgccri 41 (42)
T 2jr3_A 30 VGCSGGFGCCRI 41 (42)
T ss_dssp SSSCTTEEBCBC
T ss_pred eeccCCcceeec
Confidence 36876 799974
No 3
>1ccv_A AMCI, chymotrypsin inhibitor; protein inhibitor, hemolymph, canonical inhibitor, hydrolase inhibitor; NMR {Apis mellifera} SCOP: g.22.1.1
Probab=13.70 E-value=55 Score=20.59 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=17.7
Q ss_pred CCCCCCCCCeeeccCCCC--CCCCCCCCCCeE
Q 047613 22 RFCPRACGNVSISYPFGI--GKGCYFDKSFKV 51 (224)
Q Consensus 22 ~~C~~~CG~v~IpYPFGi--g~gC~~~~gF~l 51 (224)
+.|+.+|.+. .+-+--. .+||+-++||-+
T Consensus 14 s~C~~tC~~~-~~~~C~~~C~~GC~C~~G~v~ 44 (56)
T 1ccv_A 14 SACAPTCAQP-KTRICTMQCRIGCQCQEGFLR 44 (56)
T ss_dssp CTTCCCSSCS-CCCCSSSSCEEEEEECTTCEE
T ss_pred CCCcCccCCC-CCCCCcCcCCCCCcCCCCeeE
Confidence 5799999987 3221111 247776667765
No 4
>1hx2_A BSTI; beta-sheet disulfide-rich, hydrolase inhibitor; NMR {Bombina bombina} SCOP: g.22.1.2
Probab=13.46 E-value=59 Score=20.64 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=16.1
Q ss_pred CCCCCCCCCCeeeccCCCC--CCCCCCCCC
Q 047613 21 QRFCPRACGNVSISYPFGI--GKGCYFDKS 48 (224)
Q Consensus 21 ~~~C~~~CG~v~IpYPFGi--g~gC~~~~g 48 (224)
.+.|+.+|.+...+-.--. .+||+-++|
T Consensus 14 gs~C~~tC~~~~~~~~C~~~C~~GC~C~~G 43 (60)
T 1hx2_A 14 ASSCPKTCETRNKLVLCDKKCNQRCGCISG 43 (60)
T ss_dssp CCSSCCCTTTCCCSSSCSSCCCSEEEECTT
T ss_pred cCcCccccCCCCCCCCCCCcCCCCCCCCCC
Confidence 4679999998864211111 245665545
No 5
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=11.81 E-value=67 Score=27.95 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=5.3
Q ss_pred ccccCCCCCCCC
Q 047613 17 EVSTQRFCPRAC 28 (224)
Q Consensus 17 ~~~~~~~C~~~C 28 (224)
.......||..|
T Consensus 28 ~~~~~~~Cp~~C 39 (440)
T 3zyj_A 28 ETGSAQTCPSVC 39 (440)
T ss_dssp -----CCCCSSS
T ss_pred cCcccccCCCCC
Confidence 335556788766
No 6
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=10.15 E-value=24 Score=22.33 Aligned_cols=6 Identities=67% Similarity=2.084 Sum_probs=5.0
Q ss_pred CCCCCC
Q 047613 24 CPRACG 29 (224)
Q Consensus 24 C~~~CG 29 (224)
||++||
T Consensus 19 CPTTCG 24 (48)
T 1jy2_P 19 CPTTCG 24 (48)
T ss_dssp EECHHH
T ss_pred CCcccc
Confidence 888887
No 7
>1etr_L Epsilon-thrombin; serine proteinase, hydrolase-hydrolase inhibitor complex; HET: MIT; 2.20A {Bos taurus} SCOP: b.47.1.2 PDB: 1bbr_L* 1ets_L* 1ett_L* 1hrt_L 1id5_L 1mkw_L 1mkx_L 1tbq_L 1tbr_L 1toc_A 1ucy_L* 1uvt_L* 1uvu_L* 1vit_L* 1ycp_L 2ody_A*
Probab=8.42 E-value=1.7e+02 Score=18.38 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=12.5
Q ss_pred ccCCCCCC-CCCCCCCCeE
Q 047613 34 SYPFGIGK-GCYFDKSFKV 51 (224)
Q Consensus 34 pYPFGig~-gC~~~~gF~l 51 (224)
|=+||-|+ .|+..|=||.
T Consensus 12 pktFG~GE~dCG~RPlFEk 30 (49)
T 1etr_L 12 EKTFGAGEADCGLRPLFEK 30 (49)
T ss_dssp --CCBSCCTTTTCCTTTGG
T ss_pred CcCCCCcccccccchhHhh
Confidence 45799887 7998767774
No 8
>1vyc_A Bucain, neurotoxin; snake neurotoxin; NMR {Bungarus candidus} SCOP: g.7.1.1 PDB: 2h8u_A
Probab=7.01 E-value=1.4e+02 Score=19.34 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=15.8
Q ss_pred ccccccceeeecCCCCCCCCCCccceec
Q 047613 134 TVSGGCLAISTCDPTSKRVCYDFLCALA 161 (224)
Q Consensus 134 ~~~~gC~~~S~C~~~~~~~CsG~GCCq~ 161 (224)
.+.-||+ ++|+....+ .-+-||++
T Consensus 37 ~i~rGCa--~tCP~~~~~--~~i~CC~T 60 (65)
T 1vyc_A 37 EVKRGCV--ATCPKPWKN--EIIQCCAK 60 (65)
T ss_dssp CEEEEEE--SSCCCCCSC--CCEEEESS
T ss_pred EEECCcc--CcCcCCCCC--ceeEecCC
Confidence 3445999 999876543 23567765
No 9
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=6.56 E-value=1.6e+02 Score=20.63 Aligned_cols=19 Identities=37% Similarity=0.885 Sum_probs=14.0
Q ss_pred CCCCCCeeeccCCCCCCCCC
Q 047613 25 PRACGNVSISYPFGIGKGCY 44 (224)
Q Consensus 25 ~~~CG~v~IpYPFGig~gC~ 44 (224)
|.+|| |+||||+.-.-.|-
T Consensus 71 P~~Cg-V~~p~~Is~~~dC~ 89 (93)
T 2ljo_A 71 PGKCG-VNIPYKISTTTNCN 89 (93)
T ss_dssp HHHHT-CCCSSCCSTTCCGG
T ss_pred hHhcC-CCCCCCCCCCCCCC
Confidence 55786 78899987766664
No 10
>1ata_A Ascaris trypsin inhibitor; proteinase inhibitor(trypsin); NMR {Ascaris suum} SCOP: g.22.1.1 PDB: 1atb_A 1atd_A 1ate_A
Probab=6.43 E-value=2e+02 Score=18.45 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=17.2
Q ss_pred CCCCCCCCeeeccCCCC--C-CCCCCC--CCCeE
Q 047613 23 FCPRACGNVSISYPFGI--G-KGCYFD--KSFKV 51 (224)
Q Consensus 23 ~C~~~CG~v~IpYPFGi--g-~gC~~~--~gF~l 51 (224)
.|+.+|.+... +.-. . +||+-+ +||-.
T Consensus 17 ~C~~tC~~~~~--~C~~~C~~~gC~C~~~~G~vr 48 (62)
T 1ata_A 17 GCEGTCAQKIV--PCTRECKPPRCECIASAGFVR 48 (62)
T ss_dssp SCCBCSSCSSC--CCSCCCCCSEEECCTTTTEEE
T ss_pred CCccccCcCCC--CCcCccCCCCcCcCCCCCeEE
Confidence 69999998642 2221 3 377776 67765
Done!