Query 047613
Match_columns 224
No_of_seqs 161 out of 854
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 22:58:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047613.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047613hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 14.8 14 0.001 24.5 -0.4 19 25-44 72-90 (93)
2 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 10.6 53 0.0038 19.6 1.5 31 21-51 14-46 (60)
3 d2akla2 g.41.3.5 (A:3-40) Hypo 8.4 72 0.0053 17.6 1.4 10 20-30 2-11 (38)
4 d2cona1 g.41.15.1 (A:8-73) RNA 6.8 92 0.0067 19.2 1.4 11 19-30 21-31 (66)
5 d2dloa2 g.39.1.3 (A:43-75) Thy 6.0 1.2E+02 0.009 16.1 1.5 14 102-116 8-21 (33)
6 d1ibia1 g.39.1.3 (A:117-144) C 5.6 89 0.0065 16.0 0.7 7 24-31 4-10 (28)
7 d1qfha1 b.1.18.10 (A:646-749) 5.5 3.2E+02 0.024 16.9 3.9 10 102-111 92-101 (104)
8 d1kj6a_ g.9.1.1 (A:) Beta-defe 5.1 79 0.0058 17.8 0.3 11 151-161 31-43 (45)
9 d1n0za_ g.41.11.1 (A:) Znf265, 5.0 1.2E+02 0.0086 17.2 1.1 10 24-33 17-27 (45)
10 d1ccva_ g.22.1.1 (A:) Chymotry 4.8 1E+02 0.0073 17.9 0.7 31 22-52 14-45 (56)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=14.78 E-value=14 Score=24.54 Aligned_cols=19 Identities=42% Similarity=0.947 Sum_probs=13.3
Q ss_pred CCCCCCeeeccCCCCCCCCC
Q 047613 25 PRACGNVSISYPFGIGKGCY 44 (224)
Q Consensus 25 ~~~CG~v~IpYPFGig~gC~ 44 (224)
|..|| |++|||+.-.-.|.
T Consensus 72 P~~C~-v~l~~pis~~~dCs 90 (93)
T d1fk5a_ 72 PSKCG-VSIPYTISTSTDCS 90 (93)
T ss_dssp HHHTT-CCCSSCCSTTCCGG
T ss_pred hHhcC-CCCCCCCCCCCCCC
Confidence 56887 88898876554553
No 2
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=10.65 E-value=53 Score=19.64 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=19.2
Q ss_pred CCCCCCCCCCeeeccC--CCCCCCCCCCCCCeE
Q 047613 21 QRFCPRACGNVSISYP--FGIGKGCYFDKSFKV 51 (224)
Q Consensus 21 ~~~C~~~CG~v~IpYP--FGig~gC~~~~gF~l 51 (224)
.+.||.+|.+.+.+-. -.=-+||+=++||-|
T Consensus 14 ~s~Cp~tC~~~~~~~~C~~~C~eGC~Cp~G~vl 46 (60)
T d1hx2a_ 14 ASSCPKTCETRNKLVLCDKKCNQRCGCISGTVL 46 (60)
T ss_dssp CCSSCCCTTTCCCSSSCSSCCCSEEEECTTCEE
T ss_pred cCCCccccCCCCCCCCCCCCCCccCCCCCCEeE
Confidence 4679999999764321 111357776667665
No 3
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.42 E-value=72 Score=17.65 Aligned_cols=10 Identities=40% Similarity=0.929 Sum_probs=6.8
Q ss_pred cCCCCCCCCCC
Q 047613 20 TQRFCPRACGN 30 (224)
Q Consensus 20 ~~~~C~~~CG~ 30 (224)
.+|.|| +|+.
T Consensus 2 ~lP~CP-~C~s 11 (38)
T d2akla2 2 TLPPCP-QCNS 11 (38)
T ss_dssp CSCCCT-TTCC
T ss_pred CCCcCC-CCCC
Confidence 467787 6764
No 4
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.79 E-value=92 Score=19.16 Aligned_cols=11 Identities=45% Similarity=1.108 Sum_probs=7.4
Q ss_pred ccCCCCCCCCCC
Q 047613 19 STQRFCPRACGN 30 (224)
Q Consensus 19 ~~~~~C~~~CG~ 30 (224)
+.+.-|| +|||
T Consensus 21 ~~k~FCp-kCGn 31 (66)
T d2cona1 21 MNRVFCG-HCGN 31 (66)
T ss_dssp SSCCSCS-SSCC
T ss_pred cccccCc-ccCC
Confidence 4566677 7776
No 5
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.05 E-value=1.2e+02 Score=16.08 Aligned_cols=14 Identities=36% Similarity=0.684 Sum_probs=10.5
Q ss_pred ccCCCCeEeccCCcE
Q 047613 102 NLSGSPLTFSARSNR 116 (224)
Q Consensus 102 ~l~~~pf~~S~~~N~ 116 (224)
.|+|-||++.. .|+
T Consensus 8 ~LDGvPFtvD~-~n~ 21 (33)
T d2dloa2 8 GLDGIPFTVDA-TSQ 21 (33)
T ss_dssp BCTTSCEECCT-TCC
T ss_pred ccCCCcEEEcC-CCC
Confidence 56788999987 454
No 6
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=5.62 E-value=89 Score=15.97 Aligned_cols=7 Identities=43% Similarity=1.455 Sum_probs=3.8
Q ss_pred CCCCCCCe
Q 047613 24 CPRACGNV 31 (224)
Q Consensus 24 C~~~CG~v 31 (224)
|| +||+-
T Consensus 4 Cp-RC~~~ 10 (28)
T d1ibia1 4 CS-RCGDS 10 (28)
T ss_dssp CT-TTSSE
T ss_pred Cc-ccchh
Confidence 55 56653
No 7
>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}
Probab=5.46 E-value=3.2e+02 Score=16.87 Aligned_cols=10 Identities=10% Similarity=0.388 Sum_probs=6.4
Q ss_pred ccCCCCeEec
Q 047613 102 NLSGSPLTFS 111 (224)
Q Consensus 102 ~l~~~pf~~S 111 (224)
.+.++||.+.
T Consensus 92 ~i~gSPf~v~ 101 (104)
T d1qfha1 92 PIKNMPIDVK 101 (104)
T ss_dssp ECBTCSEEEE
T ss_pred ECCCCCEEEE
Confidence 4467888653
No 8
>d1kj6a_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD3 [TaxId: 9606]}
Probab=5.10 E-value=79 Score=17.81 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=8.1
Q ss_pred CCCC--Cccceec
Q 047613 151 RVCY--DFLCALA 161 (224)
Q Consensus 151 ~~Cs--G~GCCq~ 161 (224)
+.|| |..||..
T Consensus 31 G~CS~~GrKCCRk 43 (45)
T d1kj6a_ 31 GKCSTRGRKCCRR 43 (45)
T ss_dssp ECSSSSSCEEEEE
T ss_pred ccccccchhhhcc
Confidence 6775 7889964
No 9
>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.03 E-value=1.2e+02 Score=17.23 Aligned_cols=10 Identities=60% Similarity=1.517 Sum_probs=7.8
Q ss_pred CCC-CCCCeee
Q 047613 24 CPR-ACGNVSI 33 (224)
Q Consensus 24 C~~-~CG~v~I 33 (224)
||. +||++.+
T Consensus 17 C~~~~C~~~NF 27 (45)
T d1n0za_ 17 CPDKKCGNVNF 27 (45)
T ss_dssp CSSTTTCCBCC
T ss_pred CCCCCCCCeec
Confidence 884 9999854
No 10
>d1ccva_ g.22.1.1 (A:) Chymotrypsin inhibitor AMCI {Honeybee (Apis mellifera) [TaxId: 7460]}
Probab=4.80 E-value=1e+02 Score=17.92 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=0.0
Q ss_pred CCCCCCCCCeee-ccCCCCCCCCCCCCCCeEE
Q 047613 22 RFCPRACGNVSI-SYPFGIGKGCYFDKSFKVI 52 (224)
Q Consensus 22 ~~C~~~CG~v~I-pYPFGig~gC~~~~gF~l~ 52 (224)
+.||.+|.+..- .-+-.=-+||+=++||-+.
T Consensus 14 ~~C~~tC~~~~~~~C~~~C~~GC~C~~G~v~~ 45 (56)
T d1ccva_ 14 SACAPTCAQPKTRICTMQCRIGCQCQEGFLRN 45 (56)
T ss_dssp CTTCCCSSCSCCCCSSSSCEEEEEECTTCEEE
T ss_pred CcCccccCccCCCcCCCCCCCCCCCCCCeeEc
Done!