BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047614
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 26 NLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQ 85
+LN +P ++ Y + L S + + I ACSG ++ +T PT A+
Sbjct: 178 SLNWVPVSVEGYWQITLDSITMDGETI-ACSGGCQAIVDTGTSLLTGPTSAI-------A 229
Query: 86 NVQSQVTLNLATEQVSSKVVI 106
N+QS + A+E ++VI
Sbjct: 230 NIQSDIG---ASENSDGEMVI 247
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 26 NLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQ 85
+LN +P ++ Y + L S + + I ACSG ++ +T PT A+
Sbjct: 178 SLNWVPVSVEGYWQITLDSITMDGETI-ACSGGCQAIVDTGTSLLTGPTSAI-------A 229
Query: 86 NVQSQVTLNLATEQVSSKVVI 106
N+QS + A+E ++VI
Sbjct: 230 NIQSDIG---ASENSDGEMVI 247
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 26 NLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQ 85
+LN +P ++ Y + L S + + I ACSG ++ +T PT A+
Sbjct: 178 SLNWVPVSVEGYWQITLDSITMDGETI-ACSGGCQAIVDTGTSLLTGPTSAI-------A 229
Query: 86 NVQSQVTLNLATEQVSSKVVI 106
N+QS + A+E ++VI
Sbjct: 230 NIQSDIG---ASENSDGEMVI 247
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 26 NLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQ 85
+LN +P ++ Y + L S + + I ACSG ++ +T PT A+
Sbjct: 178 SLNWVPVSVEGYWQITLDSITMDGETI-ACSGGCQAIVDTGTSLLTGPTSAI-------A 229
Query: 86 NVQSQVTLNLATEQVSSKVVI 106
N+QS + A+E ++VI
Sbjct: 230 NIQSDIG---ASENSDGEMVI 247
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 26 NLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQ 85
+LN +P ++ Y + L S + + I ACSG ++ +T PT A+
Sbjct: 178 SLNWVPVSVEGYWQITLDSITMDGETI-ACSGGCQAIVDTGTSLLTGPTSAI-------A 229
Query: 86 NVQSQVTLNLATEQVSSKVVI 106
N+QS + A+E ++VI
Sbjct: 230 NIQSDIG---ASENSDGEMVI 247
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 26 NLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQ 85
+LN +P ++ Y + L S + + I ACSG ++ +T PT A+
Sbjct: 222 SLNWVPVSVEGYWQITLDSITMDGETI-ACSGGCQAIVDTGTSLLTGPTSAI-------A 273
Query: 86 NVQSQVTLNLATEQVSSKVVI 106
N+QS + A+E ++VI
Sbjct: 274 NIQSDIG---ASENSDGEMVI 291
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 26 NLNGIPTALSFYSLVELISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQ 85
+LN +P ++ Y + L S + + I ACSG ++ +T PT A+
Sbjct: 222 SLNWVPVSVEGYWQITLDSITMDGETI-ACSGGCQAIVDTGTSLLTGPTSAI-------A 273
Query: 86 NVQSQVTLNLATEQVSSKVVI 106
N+QS + A+E ++VI
Sbjct: 274 NIQSDIG---ASENSDGEMVI 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,770,015
Number of Sequences: 62578
Number of extensions: 137787
Number of successful extensions: 344
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 8
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)