Query 047614
Match_columns 231
No_of_seqs 109 out of 1142
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 12:56:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 1.3E-39 2.8E-44 290.9 13.4 215 9-227 222-449 (449)
2 KOG1303 Amino acid transporter 100.0 1.9E-31 4.1E-36 240.9 14.2 217 7-230 203-437 (437)
3 PTZ00206 amino acid transporte 100.0 3.3E-31 7.1E-36 243.2 13.4 194 28-228 256-465 (467)
4 PLN03074 auxin influx permease 100.0 2.5E-30 5.4E-35 237.2 13.3 195 29-230 234-454 (473)
5 PF01490 Aa_trans: Transmembra 100.0 6.4E-31 1.4E-35 236.2 1.3 194 24-224 188-408 (409)
6 KOG4303 Vesicular inhibitory a 100.0 2.4E-30 5.2E-35 221.9 0.7 209 14-230 288-517 (524)
7 KOG1305 Amino acid transporter 99.9 1.3E-23 2.7E-28 189.1 16.0 198 24-230 190-408 (411)
8 COG0814 SdaC Amino acid permea 99.1 1.5E-09 3.3E-14 98.6 13.3 190 25-224 190-412 (415)
9 TIGR00837 araaP aromatic amino 98.3 5E-06 1.1E-10 74.5 9.6 143 43-194 202-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 98.3 2.3E-05 5E-10 70.9 13.8 184 24-216 180-391 (394)
11 PRK15132 tyrosine transporter 97.5 0.0016 3.4E-08 59.2 12.2 182 30-220 183-392 (403)
12 PRK10483 tryptophan permease; 97.5 0.0016 3.6E-08 59.2 12.2 183 30-221 194-404 (414)
13 PRK09664 tryptophan permease T 96.9 0.027 5.8E-07 51.4 13.4 181 30-220 195-404 (415)
14 PRK10655 potE putrescine trans 96.3 0.26 5.6E-06 44.9 16.0 32 43-80 213-245 (438)
15 PRK13629 threonine/serine tran 95.9 0.13 2.9E-06 47.2 11.6 161 58-221 253-440 (443)
16 PRK11021 putative transporter; 95.9 0.45 9.7E-06 43.0 15.0 30 43-78 201-231 (410)
17 TIGR03813 put_Glu_GABA_T putat 95.8 0.33 7.1E-06 44.9 14.2 33 43-81 218-251 (474)
18 PF13520 AA_permease_2: Amino 95.8 0.62 1.3E-05 42.0 15.6 37 43-86 212-248 (426)
19 PRK10644 arginine:agmatin anti 95.6 0.48 1E-05 43.4 14.4 31 43-79 215-246 (445)
20 TIGR03810 arg_ornith_anti argi 95.6 0.66 1.4E-05 42.8 15.4 36 43-84 219-254 (468)
21 PRK10746 putative transport pr 95.5 0.43 9.4E-06 44.0 13.9 145 43-194 224-388 (461)
22 PRK11357 frlA putative fructos 95.5 0.23 5E-06 45.4 11.7 31 43-79 219-250 (445)
23 TIGR00814 stp serine transport 95.4 0.057 1.2E-06 49.0 7.2 134 58-191 227-376 (397)
24 KOG1287 Amino acid transporter 94.9 0.74 1.6E-05 42.7 13.1 158 25-195 201-387 (479)
25 TIGR00905 2A0302 transporter, 94.9 0.53 1.1E-05 43.5 12.4 32 43-80 223-254 (473)
26 PRK10435 cadB lysine/cadaverin 94.4 1.1 2.4E-05 40.9 13.1 32 43-80 211-243 (435)
27 PRK10249 phenylalanine transpo 94.3 0.94 2E-05 41.7 12.6 31 43-79 233-264 (458)
28 PRK10197 gamma-aminobutyrate t 94.0 0.98 2.1E-05 41.4 11.9 30 43-78 205-235 (446)
29 TIGR00907 2A0304 amino acid pe 93.7 4.5 9.8E-05 37.3 15.9 36 43-84 241-277 (482)
30 PRK11049 D-alanine/D-serine/gl 93.3 1.7 3.8E-05 40.0 12.3 32 43-80 235-267 (469)
31 TIGR00913 2A0310 amino acid pe 93.2 3.6 7.8E-05 37.9 14.4 29 43-77 221-250 (478)
32 TIGR00909 2A0306 amino acid tr 93.2 1.9 4.1E-05 39.0 12.4 32 43-80 219-251 (429)
33 PRK10836 lysine transporter; P 93.0 4.9 0.00011 37.3 14.9 34 43-82 229-263 (489)
34 PRK10238 aromatic amino acid t 92.7 4.2 9E-05 37.4 13.9 27 43-75 224-251 (456)
35 PRK11387 S-methylmethionine tr 92.7 2.8 6.1E-05 38.6 12.8 31 43-79 230-261 (471)
36 TIGR00910 2A0307_GadC glutamat 92.3 4.9 0.00011 37.6 14.0 28 43-76 218-246 (507)
37 TIGR00908 2A0305 ethanolamine 92.0 4.9 0.00011 36.6 13.4 29 43-77 215-244 (442)
38 TIGR00930 2a30 K-Cl cotranspor 91.9 4.9 0.00011 40.7 14.2 30 43-78 304-334 (953)
39 TIGR00906 2A0303 cationic amin 91.9 2.6 5.7E-05 40.0 11.7 31 43-79 255-286 (557)
40 TIGR00911 2A0308 L-type amino 91.4 3.2 7E-05 38.6 11.7 32 43-80 259-291 (501)
41 TIGR01773 GABAperm gamma-amino 91.0 4.9 0.00011 36.7 12.3 32 43-80 225-257 (452)
42 PRK15238 inner membrane transp 90.6 4.7 0.0001 37.5 12.0 30 43-78 235-265 (496)
43 PRK10580 proY putative proline 90.2 11 0.00024 34.6 13.9 30 43-78 223-253 (457)
44 COG0531 PotE Amino acid transp 89.9 11 0.00024 34.2 13.6 37 43-85 225-262 (466)
45 TIGR00912 2A0309 spore germina 89.4 3.1 6.8E-05 36.7 9.4 137 43-192 203-352 (359)
46 PRK15049 L-asparagine permease 88.4 14 0.00029 34.6 13.2 34 43-82 244-278 (499)
47 COG1457 CodB Purine-cytosine p 82.9 37 0.00079 31.5 12.8 127 43-183 218-351 (442)
48 COG1914 MntH Mn2+ and Fe2+ tra 79.0 26 0.00056 32.2 10.4 83 139-221 323-409 (416)
49 PF00324 AA_permease: Amino ac 75.4 5.2 0.00011 36.9 5.0 55 27-87 199-263 (478)
50 KOG1286 Amino acid transporter 71.9 52 0.0011 31.4 10.8 47 27-78 231-286 (554)
51 TIGR00800 ncs1 NCS1 nucleoside 70.7 41 0.00088 30.8 9.7 134 41-183 228-378 (442)
52 KOG4812 Golgi-associated prote 70.2 10 0.00023 31.9 5.0 72 149-224 161-245 (262)
53 PF05805 L6_membrane: L6 membr 67.5 13 0.00028 30.4 5.0 65 165-229 44-117 (195)
54 TIGR03428 ureacarb_perm permea 65.6 1.1E+02 0.0024 28.1 15.7 36 43-84 237-273 (475)
55 cd08762 Cyt_b561_CYBASC3 Verte 63.7 12 0.00026 30.2 4.1 103 12-123 22-133 (179)
56 cd08764 Cyt_b561_CG1275_like N 62.1 14 0.0003 30.8 4.3 112 5-123 3-122 (214)
57 PRK11375 allantoin permease; P 61.5 1.2E+02 0.0026 28.3 10.9 131 43-183 252-392 (484)
58 TIGR02358 thia_cytX probable h 60.1 1.3E+02 0.0028 27.0 13.5 127 41-183 193-323 (386)
59 PLN02680 carbon-monoxide oxyge 57.0 20 0.00042 30.2 4.4 102 13-123 33-142 (232)
60 PLN02810 carbon-monoxide oxyge 53.0 18 0.00039 30.4 3.6 103 12-123 32-142 (231)
61 KOG1619 Cytochrome b [Energy p 52.6 31 0.00068 29.1 4.9 103 12-123 41-151 (245)
62 cd08765 Cyt_b561_CYBRD1 Verteb 51.2 34 0.00073 26.9 4.6 101 15-124 2-111 (153)
63 TIGR00813 sss transporter, SSS 50.4 1.9E+02 0.0041 25.9 11.7 33 44-82 228-260 (407)
64 PLN02351 cytochromes b561 fami 49.0 23 0.00051 29.9 3.6 102 13-124 35-146 (242)
65 PF07954 DUF1689: Protein of u 47.0 48 0.001 26.0 4.9 60 169-229 33-93 (152)
66 COG1113 AnsP Gamma-aminobutyra 40.2 1.3E+02 0.0028 28.0 7.3 49 143-193 338-388 (462)
67 PRK00701 manganese transport p 39.6 3.1E+02 0.0067 25.3 15.6 90 128-222 335-434 (439)
68 TIGR00796 livcs branched-chain 37.6 3.1E+02 0.0068 24.8 10.4 33 153-191 315-347 (378)
69 cd08766 Cyt_b561_ACYB-1_like P 33.9 60 0.0013 25.2 3.6 94 22-124 5-104 (144)
70 PF03845 Spore_permease: Spore 31.9 2E+02 0.0044 24.7 7.1 88 43-136 199-296 (320)
71 PRK13183 psbN photosystem II r 29.8 49 0.0011 20.4 2.0 30 58-87 5-34 (46)
72 PF02468 PsbN: Photosystem II 28.2 63 0.0014 19.7 2.2 28 60-87 4-31 (43)
73 CHL00020 psbN photosystem II p 26.4 56 0.0012 19.9 1.7 29 59-87 3-31 (43)
74 KOG2082 K+/Cl- cotransporter K 25.6 7.2E+02 0.016 25.2 11.5 29 43-76 434-462 (1075)
75 PF00689 Cation_ATPase_C: Cati 24.7 2.4E+02 0.0052 21.8 5.8 28 144-171 128-155 (182)
76 PF07760 DUF1616: Protein of u 24.7 4.5E+02 0.0098 22.6 8.6 52 150-203 6-59 (287)
77 PRK09442 panF sodium/panthothe 24.5 5.6E+02 0.012 23.6 14.4 33 44-82 262-294 (483)
78 PRK10921 twin-arginine protein 23.9 4.5E+02 0.0098 22.3 8.3 87 105-192 72-180 (258)
79 PRK11403 hypothetical protein; 23.5 3.1E+02 0.0068 20.3 5.6 54 174-227 36-89 (113)
80 PRK11026 ftsX cell division AB 23.0 4.4E+02 0.0094 23.0 7.5 25 205-229 280-304 (309)
81 PF02133 Transp_cyt_pur: Perme 23.0 86 0.0019 28.4 3.2 131 43-183 226-367 (440)
82 TIGR00439 ftsX putative protei 22.7 3.6E+02 0.0079 23.5 7.0 28 203-230 278-305 (309)
83 PRK12488 acetate permease; Pro 21.9 6.8E+02 0.015 23.7 14.1 37 43-85 285-324 (549)
84 KOG1289 Amino acid transporter 21.1 7.4E+02 0.016 23.8 12.2 41 43-88 276-316 (550)
85 PF03134 TB2_DP1_HVA22: TB2/DP 20.8 2.9E+02 0.0064 19.2 5.0 27 169-195 2-28 (94)
86 COG1953 FUI1 Cytosine/uracil/t 20.2 7.4E+02 0.016 23.4 10.4 119 61-183 281-406 (497)
87 TIGR02230 ATPase_gene1 F0F1-AT 20.2 3.5E+02 0.0076 19.6 5.5 22 203-224 75-96 (100)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=290.89 Aligned_cols=215 Identities=22% Similarity=0.326 Sum_probs=191.8
Q ss_pred EeeeecCcccCCCccccccCChhhhhhhhhhc--------cC-cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhh
Q 047614 9 FVGATKGVGFHGKGRLFNLNGIPTALSFYSLV--------EL-ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLG 79 (231)
Q Consensus 9 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~fa--------p~-~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~G 79 (231)
+|-..|..++++++...+|+++|+++|+..|| |. |+||+|++| .++|| +++.++.+++.+|..+|++|
T Consensus 222 ~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F-~g~~g--VLn~~M~~V~~ly~~~Gf~G 298 (449)
T KOG1304|consen 222 YYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKF-PGPFG--VLNLGMGIVTLLYIFLGFFG 298 (449)
T ss_pred HHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhc-CCccc--hHHHHHHHHHHHHHHHHHHH
Confidence 34455666788888899999999999977665 88 999999999 45544 99999999999999999999
Q ss_pred hhhcCCCchhhHhhccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCC--CcchhHHHHHHHHHHHHHHH
Q 047614 80 YLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYK--DCKSASILIRMSLLVSTVVL 157 (231)
Q Consensus 80 Y~~fG~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~--~~~~~~~~~r~~~~~~~~~i 157 (231)
|++|||++++.|+.|+|++ +..+.+++++++.+..+||||++|+.+.+|+++.++.+ .+++..+.+|..+++++..+
T Consensus 299 Yl~fG~~v~~sITLNLP~~-~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~i 377 (449)
T KOG1304|consen 299 YLAFGDDVKGSITLNLPQE-ILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLI 377 (449)
T ss_pred HhhccccccceEEecCCcc-HHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999995 55677788899999999999999999999987665422 14677899999999999999
Q ss_pred HhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhhhccc--CCchHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047614 158 AAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVH--RNWGYELIGILIIMLLVVFVGVLGTYSSIAQT 227 (231)
Q Consensus 158 A~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~--~~~~~~~~~~~~i~~~Gi~~~v~Gt~~si~~l 227 (231)
|..+|+++.+++|+||++|+.+.+++|+++|++.++++ +..+|+++++.+++++|+++++.|||.|++|+
T Consensus 378 A~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 378 AVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999999999999999999999765 35679999999999999999999999999874
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.97 E-value=1.9e-31 Score=240.86 Aligned_cols=217 Identities=24% Similarity=0.436 Sum_probs=189.1
Q ss_pred EEEeeeecCcccCCC-ccccccCCh---hhhhhhhhhc-------cC--cCCCCcccccccccCccchHhHHHHHHHHhh
Q 047614 7 VFFVGATKGVGFHGK-GRLFNLNGI---PTALSFYSLV-------EL--ISKSTKKQVIVACSGNQVLLISFAICTITYP 73 (231)
Q Consensus 7 i~~~g~~~~~~~~~~-~~~~~~~~~---~~~~g~~~fa-------p~--~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~ 73 (231)
.++.|+.+|++.+++ ....++... ++++|+++|+ |+ ++||+|+|| +|++..++..++.+|.
T Consensus 203 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f------~~~~lis~~~~~~~y~ 276 (437)
T KOG1303|consen 203 LIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKF------KKALLISYIIVTFLYF 276 (437)
T ss_pred HHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhh------hhHHHHHHHHHHHHHH
Confidence 456678888877554 445555544 4999999997 66 999999999 9999999999999999
Q ss_pred hhhhhhhhhcCCCchhhHhhccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCC----CcchhHHHHHHH
Q 047614 74 TMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYK----DCKSASILIRMS 149 (231)
Q Consensus 74 ~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~----~~~~~~~~~r~~ 149 (231)
.+++.||++|||+++|+++.|++...+..+.+++++.+|++.+|+++.+|+.+.+|+....+++ ...+.|...|+.
T Consensus 277 ~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~ 356 (437)
T KOG1303|consen 277 PVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTF 356 (437)
T ss_pred HHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhH
Confidence 9999999999999999999999644456788999999999999999999999999998876544 234589999999
Q ss_pred HHHHHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchHHHHHHHHH-HHHHHHHHHHhHHHHHHHHH
Q 047614 150 LLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILII-MLLVVFVGVLGTYSSIAQTV 228 (231)
Q Consensus 150 ~~~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~i-~~~Gi~~~v~Gt~~si~~l~ 228 (231)
++..+.++|+.+|+|+++++++||+...++++++|+++|++.+|.+ +...+|..++.+ +++|+++++....+++.+++
T Consensus 357 ~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~-~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li 435 (437)
T KOG1303|consen 357 FVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPK-RFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLI 435 (437)
T ss_pred HHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998766 556677888888 79999999999999999887
Q ss_pred hh
Q 047614 229 KQ 230 (231)
Q Consensus 229 ~~ 230 (231)
.+
T Consensus 436 ~~ 437 (437)
T KOG1303|consen 436 ID 437 (437)
T ss_pred hC
Confidence 53
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=99.97 E-value=3.3e-31 Score=243.16 Aligned_cols=194 Identities=19% Similarity=0.258 Sum_probs=165.2
Q ss_pred CChhhhhhhhhhc--------cC-cCCCCc--ccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhhHhhcc-
Q 047614 28 NGIPTALSFYSLV--------EL-ISKSTK--KQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNL- 95 (231)
Q Consensus 28 ~~~~~~~g~~~fa--------p~-~~m~~p--~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~- 95 (231)
++.+.++|++.|| |+ +||||| +|| .+++.+++.+++.+|..+|++||++||++++++++.|+
T Consensus 256 ~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~------~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~ 329 (467)
T PTZ00206 256 NRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKF------VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYD 329 (467)
T ss_pred hHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHH------HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCC
Confidence 4578889988776 55 999885 677 89999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCC-CCcchhHHHHHHHHHHHHHHHHhhccchhHHHHhhhhH
Q 047614 96 ATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANY-KDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAF 174 (231)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~ 174 (231)
|.++....++++++.+.++.+||++.+|+|+.+++.+..+. +..++++...+..++..+.++|+.+|+++.+++++||+
T Consensus 330 p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~ 409 (467)
T PTZ00206 330 PVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSI 409 (467)
T ss_pred CCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHH
Confidence 55555567788888889999999999999999888764432 22345666667777778899999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhh---cccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047614 175 LIVAVSFLLPCVCYLKIF---QVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTV 228 (231)
Q Consensus 175 ~~~~l~fi~P~~~~l~~~---~~~~~~~~~~~~~~~i~~~Gi~~~v~Gt~~si~~l~ 228 (231)
+++.++|++|+++|++.. +++ ..+++++.+++++++|++..+.|||+|+.+.+
T Consensus 410 ~~~~l~fi~P~lf~l~~~~~~~~~-~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 410 SGGLLGFILPALLFMYSGGFTWQK-VGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHh-hchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 999999999999999842 222 44566789999999999999999999999865
No 4
>PLN03074 auxin influx permease; Provisional
Probab=99.97 E-value=2.5e-30 Score=237.17 Aligned_cols=195 Identities=15% Similarity=0.224 Sum_probs=162.7
Q ss_pred Chhhhhhhhhhc--------cC-cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchh--hHhhccCC
Q 047614 29 GIPTALSFYSLV--------EL-ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQS--QVTLNLAT 97 (231)
Q Consensus 29 ~~~~~~g~~~fa--------p~-~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~--~il~n~~~ 97 (231)
.++.+.+++.|+ |+ +|||||+|| ++++..++..++..|+.+|+.||++|||++++ +.+.|+|+
T Consensus 234 ~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F------~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~ 307 (473)
T PLN03074 234 LYFTGATNILYTFGGHAVTVEIMHAMWKPQKF------KYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPR 307 (473)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHhccChhcc------cchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCC
Confidence 444555445554 55 999999999 99999999999999999999999999999864 56777887
Q ss_pred CchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccchhHHHHhhhhHHHH
Q 047614 98 EQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIV 177 (231)
Q Consensus 98 ~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~~~~ 177 (231)
+++ .++++++++++++.+||+++.|+.+.+|+..+.+.+.....|..+|+.+++.++++|+.+|+|+++++|+||++++
T Consensus 308 ~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s 386 (473)
T PLN03074 308 SGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVS 386 (473)
T ss_pred chH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 654 5678888999999999999999999999877654332456789999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhccc--C----------C--chHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHhh
Q 047614 178 AVSFLLPCVCYLKIFQVH--R----------N--WGYELIGILIIMLL-VVFVGVLGTYSSIAQTVKQ 230 (231)
Q Consensus 178 ~l~fi~P~~~~l~~~~~~--~----------~--~~~~~~~~~~i~~~-Gi~~~v~Gt~~si~~l~~~ 230 (231)
.++|++|+++|+++++++ | . ++++.++|++++++ |+++.+.|+|+|+++++++
T Consensus 387 ~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~ 454 (473)
T PLN03074 387 FTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQ 454 (473)
T ss_pred HHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHh
Confidence 999999999999876432 0 1 12346899999985 6666789999999999986
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.96 E-value=6.4e-31 Score=236.22 Aligned_cols=194 Identities=28% Similarity=0.492 Sum_probs=171.3
Q ss_pred ccccCChhhhhhhhhhc--------cC-cCCCCcccccccccCc---cchHhHHHHHHHHhhhhhhhhhhhcCCCchhhH
Q 047614 24 LFNLNGIPTALSFYSLV--------EL-ISKSTKKQVIVACSGN---QVLLISFAICTITYPTMAVLGYLIYGQNVQSQV 91 (231)
Q Consensus 24 ~~~~~~~~~~~g~~~fa--------p~-~~m~~p~~~~~~~~~~---~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~i 91 (231)
..++.+++.++|+++|+ |. +|||+|+|| + ++..+++..++.+|..+|..||++||+++++|+
T Consensus 188 ~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~------~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~i 261 (409)
T PF01490_consen 188 FISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF------KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNI 261 (409)
T ss_pred cchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc------cccceeeeehhhhhhHHhhhhhhcccceeeeeecchh
Confidence 45667899999988886 45 999999998 6 999999999999999999999999999999999
Q ss_pred hhccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCC----------CCCcchhHHHHHHHHHHHHHHHHhhc
Q 047614 92 TLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPAN----------YKDCKSASILIRMSLLVSTVVLAAVF 161 (231)
Q Consensus 92 l~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~----------~~~~~~~~~~~r~~~~~~~~~iA~~i 161 (231)
+.|++++++...++++++.++++.+||++.+|.++.+|+.+.++ .+.++++|..+|+.++..++++|..+
T Consensus 262 l~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~v 341 (409)
T PF01490_consen 262 LLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFV 341 (409)
T ss_pred hhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhc
Confidence 99999887667788999999999999999999999999987642 12246778999999999999999999
Q ss_pred cchhHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchH-----HHHHHHHHHHHHHHHHHHhHHHHH
Q 047614 162 PSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGY-----ELIGILIIMLLVVFVGVLGTYSSI 224 (231)
Q Consensus 162 P~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~-----~~~~~~~i~~~Gi~~~v~Gt~~si 224 (231)
|+++++++++||++++.++|++|+++|++.++++ .++. +...+++++++|++.++.|+|+++
T Consensus 342 p~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 342 PNFGDIISLVGALFGSFISFILPALLYLKLFKRK-RNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred cchhhhhcccchHHHHhHHHHHHHHHHHHhhccc-ccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 9999999999999999999999999999998765 2111 235678999999999999999886
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.96 E-value=2.4e-30 Score=221.88 Aligned_cols=209 Identities=21% Similarity=0.264 Sum_probs=188.0
Q ss_pred cCcccCCCccccccCChhhhhhhhhhc-------cC--cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcC
Q 047614 14 KGVGFHGKGRLFNLNGIPTALSFYSLV-------EL--ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYG 84 (231)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~~fa-------p~--~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG 84 (231)
.+++|+......|.+++|.++|+++|+ |. .+|++|+|| +..+.|+.+...++-..+|..||++||
T Consensus 288 ~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~F------n~Ml~WsHIAAaVfK~~Fg~~~fLTf~ 361 (524)
T KOG4303|consen 288 SDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQF------NVMLKWSHIAAAVFKVVFGMLGFLTFG 361 (524)
T ss_pred hhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHh------eeeeehHHHHHHHHHHHHHHheeeeec
Confidence 466777666788999999999998887 77 889999999 889999999999999999999999999
Q ss_pred CCchhhHhhccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCC------------CCcchhHHHHHHHHHH
Q 047614 85 QNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANY------------KDCKSASILIRMSLLV 152 (231)
Q Consensus 85 ~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~------------~~~~~~~~~~r~~~~~ 152 (231)
+++|+.|++|+|++.+ ..++++..++..+.||||.++.+.+.+|+.+.... ..-+.+.+.+|++++.
T Consensus 362 ~~TqevItnnLp~qsf-k~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvv 440 (524)
T KOG4303|consen 362 ELTQEVITNNLPNQSF-KILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVV 440 (524)
T ss_pred hhhHHHHhcCCCccch-hhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHH
Confidence 9999999999998765 56888888999999999999999999999765321 1124456789999999
Q ss_pred HHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 047614 153 STVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQ 230 (231)
Q Consensus 153 ~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~i~~~Gi~~~v~Gt~~si~~l~~~ 230 (231)
++.++|+.+|+|..+++++|++.++.++|++|++||++++++. ....++.++..++++|...++.|.|.|..+++++
T Consensus 441 fTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~-L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A 517 (524)
T KOG4303|consen 441 FTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT-LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRA 517 (524)
T ss_pred HHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh-hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHH
Confidence 9999999999999999999999999999999999999999776 6778999999999999999999999999999986
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.91 E-value=1.3e-23 Score=189.09 Aligned_cols=198 Identities=21% Similarity=0.355 Sum_probs=170.8
Q ss_pred ccccCChhhhhhhhhhc--------cC-cCCCCccc--ccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhhHh
Q 047614 24 LFNLNGIPTALSFYSLV--------EL-ISKSTKKQ--VIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVT 92 (231)
Q Consensus 24 ~~~~~~~~~~~g~~~fa--------p~-~~m~~p~~--~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~il 92 (231)
..++++...++++++|+ |+ +|||||++ + .++.+.+...++.+|...|.+||+.|||++++|++
T Consensus 190 ~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i------~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l 263 (411)
T KOG1305|consen 190 LSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKI------QRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLL 263 (411)
T ss_pred cchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHH------HHHHHHHHHHHHHHHHHHHHhhhheecccchHHHH
Confidence 33346888999988887 88 99999965 7 99999999999999999999999999999999999
Q ss_pred hccCCCchh------HHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCC----CcchhHHHHHHHHHHHHHHHHhhcc
Q 047614 93 LNLATEQVS------SKVVIYTILAGPIAKYALTVMPIATAIENRLPANYK----DCKSASILIRMSLLVSTVVLAAVFP 162 (231)
Q Consensus 93 ~n~~~~~~~------~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~----~~~~~~~~~r~~~~~~~~~iA~~iP 162 (231)
.|+|+.... ....+..++++.+..+|++.+|.|..+++.+.++.. ..+.++..++..++..+.+.|+.+|
T Consensus 264 ~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p 343 (411)
T KOG1305|consen 264 HNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVP 343 (411)
T ss_pred hcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhc
Confidence 999864322 256778889999999999999999998775544322 3456778999999999999999999
Q ss_pred chhHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 047614 163 SFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVKQ 230 (231)
Q Consensus 163 ~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~i~~~Gi~~~v~Gt~~si~~l~~~ 230 (231)
+++++++++||++++.++|++|+.+|++..|+ +.+++...++..++|+..++.|+...+.++..+
T Consensus 344 ~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 344 SIGTIFGFVGATSSTSISFILPALYYLKASKK---KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred cHHHHHHHhhhhhhhhhHHHHHHHhhheeecc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999875 456788889999999999999999998887643
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.09 E-value=1.5e-09 Score=98.60 Aligned_cols=190 Identities=15% Similarity=0.171 Sum_probs=132.4
Q ss_pred cccCChhhhhhhhhhc-------c-C-cCCCCccc--ccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhhHhh
Q 047614 25 FNLNGIPTALSFYSLV-------E-L-ISKSTKKQ--VIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTL 93 (231)
Q Consensus 25 ~~~~~~~~~~g~~~fa-------p-~-~~m~~p~~--~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~il~ 93 (231)
.+|..+..+++++.|+ | . +|||++++ . +|+...+..+..++|..++..+|..+|+++++++++
T Consensus 190 ~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~------~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~ 263 (415)
T COG0814 190 SFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAV------RKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILA 263 (415)
T ss_pred hhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 5566777888877665 3 3 99997754 7 999999999999999999999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHhhhhhccchhhHH-----------------HHHHhhCCCCCCCc-----chhHHHHHHHHH
Q 047614 94 NLATEQVSSKVVIYTILAGPIAKYALTVMPIA-----------------TAIENRLPANYKDC-----KSASILIRMSLL 151 (231)
Q Consensus 94 n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~-----------------~~l~~~~~~~~~~~-----~~~~~~~r~~~~ 151 (231)
+.++++..... ......+...+++.+.+|.+ ++++++ ++.+.+ ...........+
T Consensus 264 ~~~~~~~~l~~-~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~i~~l 340 (415)
T COG0814 264 AKEQNISLLSA-LAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--SNSKPGRKKTGLLTFLPPLIFAL 340 (415)
T ss_pred ccCchHHHHHH-HHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--ccCcccchhhhhhhHHHHHHHHH
Confidence 99765433211 11122233344444444433 333333 111111 112334445566
Q ss_pred HHHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047614 152 VSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSI 224 (231)
Q Consensus 152 ~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~i~~~Gi~~~v~Gt~~si 224 (231)
......+...|+.+.+++.+|+..+..+.++.|...+.+....+ ..+.++...++++++|+..+..-.+++.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~-~~~g~~~~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 341 LYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALK-VYGGNFLLLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee-ecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 67777888999999999999999999999999999988876443 2222225788888899888887776554
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.27 E-value=5e-06 Score=74.46 Aligned_cols=143 Identities=10% Similarity=0.063 Sum_probs=99.9
Q ss_pred cCCC-CcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhhH-------------hhccCCCchhHHHHHHH
Q 047614 43 ISKS-TKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQV-------------TLNLATEQVSSKVVIYT 108 (231)
Q Consensus 43 ~~m~-~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~i-------------l~n~~~~~~~~~~~~~~ 108 (231)
+|++ |+|+. +|+...+..+++++|+.......-..+.+.-++. ..+.-.+++...+....
T Consensus 202 ~~~~~~~k~i------~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ 275 (381)
T TIGR00837 202 KYYDGNVKKV------KKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELF 275 (381)
T ss_pred HHhccCHHHH------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHH
Confidence 7786 55777 9999999999999999886665555443321111 11111122223345555
Q ss_pred HHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccchh-HHHHhhhhHHHHHHHHhhhhhh
Q 047614 109 ILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQ-SVTSLSGAFLIVAVSFLLPCVC 187 (231)
Q Consensus 109 ~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~-~v~~liGa~~~~~l~fi~P~~~ 187 (231)
..+.+..++.-.....++.+++.++++++ +..|............++|...|+.. ..++..| +.+..+.+++|+++
T Consensus 276 ~~~al~tS~~g~~l~~~d~l~~~~~~~~~--~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~ 352 (381)
T TIGR00837 276 SNFALASSFLGVTLGLFDYLADLFKFDDS--KKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALL 352 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcc--cCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 66788888887777778887777766432 12244455666677788899999876 8999999 88999999999999
Q ss_pred hhhhhcc
Q 047614 188 YLKIFQV 194 (231)
Q Consensus 188 ~l~~~~~ 194 (231)
+++.+|+
T Consensus 353 ~~~~r~~ 359 (381)
T TIGR00837 353 AWKARKK 359 (381)
T ss_pred HHHHHhc
Confidence 9998765
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.26 E-value=2.3e-05 Score=70.89 Aligned_cols=184 Identities=14% Similarity=0.176 Sum_probs=117.5
Q ss_pred ccccCChhhhhhhhhhc-------cC--cCCC-CcccccccccCccchHhHHHHHHHHhhhhhh--hh---------hhh
Q 047614 24 LFNLNGIPTALSFYSLV-------EL--ISKS-TKKQVIVACSGNQVLLISFAICTITYPTMAV--LG---------YLI 82 (231)
Q Consensus 24 ~~~~~~~~~~~g~~~fa-------p~--~~m~-~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~--~G---------Y~~ 82 (231)
..+|+..+.++++..++ |. +.++ |++|. +|+..++..+..++|+..-. .| -..
T Consensus 180 ~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~------~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~ 253 (394)
T PF03222_consen 180 PSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKI------RKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIA 253 (394)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 46677777777765555 65 5554 77888 89999999988888876422 22 112
Q ss_pred cCCCchh--hHhhccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhh
Q 047614 83 YGQNVQS--QVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAV 160 (231)
Q Consensus 83 fG~~~~~--~il~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ 160 (231)
-|+++.+ ..+.+..+++....+..+...+.+..||-=...-.+|.+++.++.+++ +..|...-....+...++|..
T Consensus 254 ~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~~--~~~r~~~~~ltf~ppl~~a~~ 331 (394)
T PF03222_consen 254 QGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKNN--SSGRLKTWLLTFLPPLIFALL 331 (394)
T ss_pred cCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--ccchHHHHHHHHHhHHHHHHH
Confidence 2222221 233344344554455666666777777766666677777777665322 223333344455567778888
Q ss_pred ccc-hhHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchH----HHHHHHHHHHHHHHHH
Q 047614 161 FPS-FQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGY----ELIGILIIMLLVVFVG 216 (231)
Q Consensus 161 iP~-~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~----~~~~~~~i~~~Gi~~~ 216 (231)
.|+ |-..+++.| ...+.+..++|+++.+|.+|+++...+ .+....+++++|++..
T Consensus 332 ~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 332 FPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred CcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence 886 688999999 899999999999999999866422222 2445555555655543
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=97.52 E-value=0.0016 Score=59.19 Aligned_cols=182 Identities=9% Similarity=0.066 Sum_probs=116.2
Q ss_pred hhhhhhhhhhc-------cC--cCCC-CcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCc-----h-----h
Q 047614 30 IPTALSFYSLV-------EL--ISKS-TKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNV-----Q-----S 89 (231)
Q Consensus 30 ~~~~~g~~~fa-------p~--~~m~-~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~-----~-----~ 89 (231)
+..++++..++ |. +.++ |++|- +|+...+..+..++|+..=......-+.+. + +
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~------~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~ 256 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKL------RWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLN 256 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCcCHHHH------HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchH
Confidence 55666654443 55 4444 66777 999999999999988876655554444321 1 1
Q ss_pred hHhhcc---CCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccc-hh
Q 047614 90 QVTLNL---ATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPS-FQ 165 (231)
Q Consensus 90 ~il~n~---~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-~~ 165 (231)
+++..+ .++++...+......+.+..||-=.....+|.++..++.+++ +..|...-....+...++|...|+ |.
T Consensus 257 ~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~--~~~r~~~~~l~flppli~a~~~P~~F~ 334 (403)
T PRK15132 257 GLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT--VGGRLQTGLITFLPPLAFALFYPRGFV 334 (403)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc--ccCCchhehhhHHHHHHHHHHhHHHHH
Confidence 222222 123333345555555677777665566677777776654432 122444455677788889999997 68
Q ss_pred HHHHhhhhHHHHHHHHhhhhhhhhhhhccc-CCchH---HHHHHHHHHHHHHHHHHHhH
Q 047614 166 SVTSLSGAFLIVAVSFLLPCVCYLKIFQVH-RNWGY---ELIGILIIMLLVVFVGVLGT 220 (231)
Q Consensus 166 ~v~~liGa~~~~~l~fi~P~~~~l~~~~~~-~~~~~---~~~~~~~i~~~Gi~~~v~Gt 220 (231)
...++.|.. .+.+.+++|+++-++.+|++ +.+.. .+...++++++|++..+.-.
T Consensus 335 ~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 335 MALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQF 392 (403)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHHH
Confidence 888888864 78899999999999987543 11111 35667778888887665443
No 12
>PRK10483 tryptophan permease; Provisional
Probab=97.52 E-value=0.0016 Score=59.19 Aligned_cols=183 Identities=10% Similarity=0.067 Sum_probs=112.8
Q ss_pred hhhhhhhhhhc-------cC--cCCC-CcccccccccCccchHhHHHHHHHHhhhhhhhhhhh-----------cCCCch
Q 047614 30 IPTALSFYSLV-------EL--ISKS-TKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLI-----------YGQNVQ 88 (231)
Q Consensus 30 ~~~~~g~~~fa-------p~--~~m~-~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~-----------fG~~~~ 88 (231)
+..++++..++ |. +.++ |++|- +|+...+..+..++|+.-=...... -|++++
T Consensus 194 ~~~alPvl~~SFgfh~iIPsl~~y~~~d~~ki------r~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~ 267 (414)
T PRK10483 194 LLMTLPFCLASFGYHGNVPSLMKYYGKDPKTI------VKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID 267 (414)
T ss_pred HHHHHHHHHhhccCCCcchHHHHHhCcCHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH
Confidence 45556644333 65 5554 56777 9999999999999998733322221 333332
Q ss_pred h--hHhhccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccc-hh
Q 047614 89 S--QVTLNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPS-FQ 165 (231)
Q Consensus 89 ~--~il~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-~~ 165 (231)
. +.+.+..+++....+..+...+.+..||-=.....+|.++..++.+++ +..|...-....+...++|...|+ |-
T Consensus 268 ~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~--~~~r~~~~~ltflPPl~~al~~P~~Fl 345 (414)
T PRK10483 268 VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS--AMGRFKTALLTFLPPVVGGLLFPNGFL 345 (414)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--cccceeeehhhHhhHHHHHHHhHHHHH
Confidence 1 111222233343345555556677777765666677888777765532 112333334566778889999998 78
Q ss_pred HHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchH----HHHHHHHHHHHHHHHHHHhHH
Q 047614 166 SVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGY----ELIGILIIMLLVVFVGVLGTY 221 (231)
Q Consensus 166 ~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~----~~~~~~~i~~~Gi~~~v~Gt~ 221 (231)
.-+++.|.. +..+.-++|++|-++.+|+.+.+.+ -+....+++++|+...+.-..
T Consensus 346 ~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~~i~~~i~ 404 (414)
T PRK10483 346 YAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVGNALVHIL 404 (414)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999977 6778889999999999875211111 233346666677766655443
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=96.92 E-value=0.027 Score=51.36 Aligned_cols=181 Identities=13% Similarity=0.114 Sum_probs=109.2
Q ss_pred hhhhhhhh--hhc-----cC--cCCC-CcccccccccCccchHhHHHHHHHHhhhh-----hhh------hhhhcCCCch
Q 047614 30 IPTALSFY--SLV-----EL--ISKS-TKKQVIVACSGNQVLLISFAICTITYPTM-----AVL------GYLIYGQNVQ 88 (231)
Q Consensus 30 ~~~~~g~~--~fa-----p~--~~m~-~p~~~~~~~~~~~v~~~a~~~~~~~y~~~-----g~~------GY~~fG~~~~ 88 (231)
+..+++++ +|. |. +.++ |++|- +|+......+..++|+.. |.. .-..-|+++.
T Consensus 195 i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~------~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~ 268 (415)
T PRK09664 195 IFMALPVCLASFGFHGNIPSLIICYGKRKDKL------IKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVD 268 (415)
T ss_pred HHHHHHHHHHhhhCCCcchHHHHHhCccHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCch
Confidence 44555544 333 55 4443 66777 788888888888887432 211 1123343433
Q ss_pred hhHh---hccCCCchhHHHHHHHHHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccc-h
Q 047614 89 SQVT---LNLATEQVSSKVVIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPS-F 164 (231)
Q Consensus 89 ~~il---~n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-~ 164 (231)
+-+. .+ .++++...+..+...+.+..||-=.....+|.+...++.+++ +..|...-....+...+.|...|+ |
T Consensus 269 ~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~--~~~r~~~~~ltflPPl~~al~~P~gF 345 (415)
T PRK09664 269 SLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS--HGGRFKTVLLTFLPPALLYLIFPNGF 345 (415)
T ss_pred HHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--cccceeeehhhHhhhHHHHHHhhHHH
Confidence 3111 12 223333445555556677777765566677888777665432 122333334566777888999998 8
Q ss_pred hHHHHhhhhHHHHHHHHhhhhhhhhhhhcccCCchH----HHHHHHHHHHHHHHHHHHhH
Q 047614 165 QSVTSLSGAFLIVAVSFLLPCVCYLKIFQVHRNWGY----ELIGILIIMLLVVFVGVLGT 220 (231)
Q Consensus 165 ~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~~~~~~----~~~~~~~i~~~Gi~~~v~Gt 220 (231)
-.-++..|.. ++.+.-++|++|-++.+|+...+.+ -+....+.+++|++..+.-.
T Consensus 346 l~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~~~ 404 (415)
T PRK09664 346 IYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWF 404 (415)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999996 6788889999999999875211111 25556666777776665544
No 14
>PRK10655 potE putrescine transporter; Provisional
Probab=96.33 E-value=0.26 Score=44.93 Aligned_cols=32 Identities=9% Similarity=-0.070 Sum_probs=27.1
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGY 80 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY 80 (231)
+|+|||+ +. +|++..+...+..+|........
T Consensus 213 ~E~k~P~r~i------PrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 213 DAVENPERNV------PIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHhhCccccc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 57 99999999999999988765433
No 15
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=95.89 E-value=0.13 Score=47.20 Aligned_cols=161 Identities=12% Similarity=0.076 Sum_probs=100.5
Q ss_pred ccchHhHHHHHHHHhhhhhhhhhhhcCCCc-----hh--hHhh---c-cCCC--------chhHHHHHHHHHHHhhhhhc
Q 047614 58 NQVLLISFAICTITYPTMAVLGYLIYGQNV-----QS--QVTL---N-LATE--------QVSSKVVIYTILAGPIAKYA 118 (231)
Q Consensus 58 ~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~-----~~--~il~---n-~~~~--------~~~~~~~~~~~~i~~~~syp 118 (231)
+|+...+..+..++|+..-...-..-+++- ++ +++. | +++. +....+..+...+++..||-
T Consensus 253 ~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFl 332 (443)
T PRK13629 253 SQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFF 332 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998887777766666432 11 1121 1 2221 22233333444455666654
Q ss_pred cchhhHHHHHHhhCC-----CC--CCCcchhHHHHHHHHHHHHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhh
Q 047614 119 LTVMPIATAIENRLP-----AN--YKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKI 191 (231)
Q Consensus 119 l~~~p~~~~l~~~~~-----~~--~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~ 191 (231)
=.....+|.++.... .+ +.+.+..+......+.+.++..|..=|++-++++-+|+-....+.|++|...-.|.
T Consensus 333 Gv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kv 412 (443)
T PRK13629 333 GHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKA 412 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHcc
Confidence 444555665544331 11 11234445666777888899999999999999998877778889999998776665
Q ss_pred hcccCCchHH-HHHHHHHHHHHHHHHHHhHH
Q 047614 192 FQVHRNWGYE-LIGILIIMLLVVFVGVLGTY 221 (231)
Q Consensus 192 ~~~~~~~~~~-~~~~~~i~~~Gi~~~v~Gt~ 221 (231)
-. .++.+ +..++++.+.|++....-.|
T Consensus 413 p~---l~~yr~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 413 PS---LAKYRGRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HH---HHHhCCCchhHHHHHHHHHHHHHHHH
Confidence 32 11122 22478888888877665554
No 16
>PRK11021 putative transporter; Provisional
Probab=95.86 E-value=0.45 Score=43.02 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=26.6
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVL 78 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~ 78 (231)
+|+|||+ +. +|+...+...+..+|+.....
T Consensus 201 ~E~k~P~k~i------PrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 201 SEFKNPERDF------PRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HhccCccccc------cHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 57 999999999999999997754
No 17
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=95.82 E-value=0.33 Score=44.86 Aligned_cols=33 Identities=6% Similarity=-0.047 Sum_probs=27.2
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGYL 81 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~ 81 (231)
+|+|||+ +. +|+...+...+..+|....+.-..
T Consensus 218 ~E~knP~r~i------PrAi~~~~~~~~~~y~l~~~~~~~ 251 (474)
T TIGR03813 218 KDVDNPDKNY------PIAILIAALGTVLIFVLGTLAIAF 251 (474)
T ss_pred HhccCcccch------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999995 57 999999999999999876655433
No 18
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=95.77 E-value=0.62 Score=42.04 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=30.8
Q ss_pred cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCC
Q 047614 43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQN 86 (231)
Q Consensus 43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~ 86 (231)
+|+|| |+. +|+...+...+.++|......-....+++
T Consensus 212 ~E~k~-k~i------p~ai~~~~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 212 EENKN-KTI------PRAIIISIIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp GGSSS-HHH------HHHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred ccccc-hhh------eeecccchhHHHHHHhhhhheeeecccch
Confidence 88888 788 99999999999999999877666655543
No 19
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=95.64 E-value=0.48 Score=43.36 Aligned_cols=31 Identities=13% Similarity=0.004 Sum_probs=27.4
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLG 79 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~G 79 (231)
+|+|||+ +. +|+...+...+..+|......-
T Consensus 215 eE~k~P~r~i------Prai~~s~~i~~v~Y~l~~~~~ 246 (445)
T PRK10644 215 GVVKNPKRNV------PIATIGGVLIAAVCYVLSSTAI 246 (445)
T ss_pred HHhhCcccch------hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 57 9999999999999999888763
No 20
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=95.63 E-value=0.66 Score=42.79 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=29.9
Q ss_pred cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcC
Q 047614 43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYG 84 (231)
Q Consensus 43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG 84 (231)
+|.|||++. +|+...+...+..+|....+..+-..+
T Consensus 219 ~e~k~~k~i------p~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 219 ARAEKRSDV------GKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred hhccCcccc------hHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 778888888 999999999999999998876654433
No 21
>PRK10746 putative transport protein YifK; Provisional
Probab=95.55 E-value=0.43 Score=44.01 Aligned_cols=145 Identities=10% Similarity=0.146 Sum_probs=67.9
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCC-ch---hhHh---hccCCCchhHHHHHHHHHHHhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQN-VQ---SQVT---LNLATEQVSSKVVIYTILAGPI 114 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~-~~---~~il---~n~~~~~~~~~~~~~~~~i~~~ 114 (231)
+|+|||+ +. +|+...+.....++|......--.....+ .. ++.. .+... +....+.+....+..+
T Consensus 224 ~E~knP~k~i------P~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~~~~il~a~~ 296 (461)
T PRK10746 224 GEAKNPQVTL------RSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGIINFVVLTAAL 296 (461)
T ss_pred HHhcChhhHH------HHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHHHHHHHHHHH
Confidence 8999995 56 89998888888888877544333222221 11 1111 11111 1111222333333333
Q ss_pred hhhccchhhHHHHH-----HhhCC----CCCCCcchhH-HHHHHHHHHHHHHHHhhccchhHHHHhhhhHHH--HHHHHh
Q 047614 115 AKYALTVMPIATAI-----ENRLP----ANYKDCKSAS-ILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLI--VAVSFL 182 (231)
Q Consensus 115 ~sypl~~~p~~~~l-----~~~~~----~~~~~~~~~~-~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~~~--~~l~fi 182 (231)
.+.--..+..-+.+ |+.++ +.++.+...+ +.+......+........|+-+.+++.+-+.++ ..+.++
T Consensus 297 s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~ 376 (461)
T PRK10746 297 SGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWF 376 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222211222 11122 1122223333 222222222333344456766666666554443 467888
Q ss_pred hhhhhhhhhhcc
Q 047614 183 LPCVCYLKIFQV 194 (231)
Q Consensus 183 ~P~~~~l~~~~~ 194 (231)
++++-|++.+|+
T Consensus 377 ~i~~~~i~~r~~ 388 (461)
T PRK10746 377 VILISQLRFRRA 388 (461)
T ss_pred HHHHHHHHHHHh
Confidence 888888888754
No 22
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=95.45 E-value=0.23 Score=45.42 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=26.6
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLG 79 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~G 79 (231)
+|+|||+ +. +|+...+...+.++|......-
T Consensus 219 ~E~k~P~r~i------P~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 219 GEIKNPGKTM------PRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHhcCccccc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 56 9999999999999998876543
No 23
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=95.37 E-value=0.057 Score=49.05 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=87.0
Q ss_pred ccchHhHHHHHHHHhhhhhhhhhhhcCCCchh-----h--Hhh---ccCCCchhHHHHHHHHHHHhhhhhccchhhHHHH
Q 047614 58 NQVLLISFAICTITYPTMAVLGYLIYGQNVQS-----Q--VTL---NLATEQVSSKVVIYTILAGPIAKYALTVMPIATA 127 (231)
Q Consensus 58 ~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~-----~--il~---n~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ 127 (231)
+|+...+..+..++|...-...-...+++.-. | .+. |-.+++....+..+...+.+..||-=...-.++.
T Consensus 227 ~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~ 306 (397)
T TIGR00814 227 LRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREG 306 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 78899999999998888777777766644311 1 122 1112333333334444456666666555666666
Q ss_pred HHhhC----CC--CCCCcchhHHHHHHHHHHHHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhh
Q 047614 128 IENRL----PA--NYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKI 191 (231)
Q Consensus 128 l~~~~----~~--~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~ 191 (231)
++..+ .. ++.+++..+......+.+.++..|..=|++-++++-+|+-....+.|++|...-.|.
T Consensus 307 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 307 LNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred HHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 65544 11 112234445566677778889999999999999997777777889999998776665
No 24
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.94 E-value=0.74 Score=42.69 Aligned_cols=158 Identities=10% Similarity=0.148 Sum_probs=87.7
Q ss_pred cccCChhhhh--hhhhhc------cC-cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhhHhhc
Q 047614 25 FNLNGIPTAL--SFYSLV------EL-ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLN 94 (231)
Q Consensus 25 ~~~~~~~~~~--g~~~fa------p~-~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~il~n 94 (231)
.+..++.+++ |.++|+ -. +|+|||+ ++ +++...++.+++.+|+.+-+..+.. -..++++.+
T Consensus 201 ~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktL------P~Ai~isi~lvt~iYil~NvAy~~v---ls~~e~l~S 271 (479)
T KOG1287|consen 201 TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTL------PRAILISIPLVTVIYVLVNVAYFTV---LSPDEILSS 271 (479)
T ss_pred CchHHHHHHHHHhhhcccCchhhccchHhhcCccccc------hHHHHHhhHHHHHHHHHhHhheeEe---cCHHHhccc
Confidence 3344455555 355665 33 9999995 56 9999999999999999998865544 334444322
Q ss_pred cC------C---CchhHHHHHHHHHHHhhhhhccchhhHHHHH-----HhhCCC----CCCCc-chhHHHHHHHHHHHHH
Q 047614 95 LA------T---EQVSSKVVIYTILAGPIAKYALTVMPIATAI-----ENRLPA----NYKDC-KSASILIRMSLLVSTV 155 (231)
Q Consensus 95 ~~------~---~~~~~~~~~~~~~i~~~~sypl~~~p~~~~l-----~~~~~~----~~~~~-~~~~~~~r~~~~~~~~ 155 (231)
-. + +++. -+.-++.+++.+.+.=-.++..-+.+ |..+++ .++++ ..+ ..+.+.....
T Consensus 272 ~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~---~allf~~~~~ 347 (479)
T KOG1287|consen 272 DAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPR---PALLFSGLLS 347 (479)
T ss_pred chHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCCh---HHHHHHHHHH
Confidence 10 0 1111 11112223333333222222211111 112221 11111 111 1223333444
Q ss_pred HHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhhhccc
Q 047614 156 VLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQVH 195 (231)
Q Consensus 156 ~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~ 195 (231)
.+...+.|++++++.++=.-.....+.+=+++|+|.++++
T Consensus 348 i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 348 IVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4555667999999999888888888899999999998765
No 25
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=94.92 E-value=0.53 Score=43.51 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=26.8
Q ss_pred cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614 43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGY 80 (231)
Q Consensus 43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY 80 (231)
+|+||+++. +|+...+..++..+|+.......
T Consensus 223 ~E~k~~r~i------Prai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 223 GRAKNKSDV------GKATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHHhccccc------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 889896667 99999999999999988876533
No 26
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=94.41 E-value=1.1 Score=40.91 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=28.0
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGY 80 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY 80 (231)
+|+|||+ +. +|+...+...+.++|+.....-.
T Consensus 211 ~E~knP~r~i------PrAi~~~~~iv~ilYil~~~~~~ 243 (435)
T PRK10435 211 GMVKNPKRTV------PLATMLGTGLAGIIYIAATQVIS 243 (435)
T ss_pred HHhhCccccc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 68 99999999999999998877544
No 27
>PRK10249 phenylalanine transporter; Provisional
Probab=94.34 E-value=0.94 Score=41.72 Aligned_cols=31 Identities=6% Similarity=-0.034 Sum_probs=25.2
Q ss_pred cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhh
Q 047614 43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLG 79 (231)
Q Consensus 43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~G 79 (231)
+|+|||+| . +|+...+......+|......-
T Consensus 233 ~E~~~P~k~i------Prai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 233 AEARDPEKSI------PKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred HHhcCHhhHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999965 6 9999999999999997754443
No 28
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=94.01 E-value=0.98 Score=41.45 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=25.5
Q ss_pred cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhh
Q 047614 43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVL 78 (231)
Q Consensus 43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~ 78 (231)
+|+|||+| . +|+...+.....++|+...+.
T Consensus 205 ~E~knP~r~i------Prai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 205 AESDTPEKHI------VRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred HHhcChhhhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999965 6 899999999999999886555
No 29
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=93.72 E-value=4.5 Score=37.32 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=24.4
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhhhhcC
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGYLIYG 84 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG 84 (231)
+|+|||+ +. +|+...+..+...++....+.-+...|
T Consensus 241 ~E~knP~r~i------P~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 241 EEIENPEVVG------PRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred HhcCChhhhc------CHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999995 46 999999988776655444433333334
No 30
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=93.25 E-value=1.7 Score=40.05 Aligned_cols=32 Identities=3% Similarity=-0.059 Sum_probs=24.4
Q ss_pred cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614 43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLGY 80 (231)
Q Consensus 43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY 80 (231)
+|+|||+| . +|+...+.......|......-+
T Consensus 235 ~E~knP~r~i------Prai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 235 AETKDPEKSL------PRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHhcCHhhHH------HHHHHHHHHHHHHHHHHHHHHHe
Confidence 99999965 6 88888777777888876665543
No 31
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=93.24 E-value=3.6 Score=37.89 Aligned_cols=29 Identities=7% Similarity=0.008 Sum_probs=25.4
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAV 77 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~ 77 (231)
+|+|||+ +. +|+...+...+..+|.....
T Consensus 221 ~E~knP~r~i------Prai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 221 GEAANPRKSI------PRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HhhcChhhHH------HHHHHHHHHHHHHHHHHHHH
Confidence 9999995 57 99999999999999998754
No 32
>TIGR00909 2A0306 amino acid transporter.
Probab=93.24 E-value=1.9 Score=39.03 Aligned_cols=32 Identities=13% Similarity=0.280 Sum_probs=27.4
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGY 80 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY 80 (231)
+|+|||+ +. +|+...+.....++|........
T Consensus 219 ~E~~~p~r~i------p~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 219 EEVKNPERDI------PKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred HhccCccccc------cHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999995 57 99999999999999998876544
No 33
>PRK10836 lysine transporter; Provisional
Probab=92.95 E-value=4.9 Score=37.26 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=27.6
Q ss_pred cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhhhhh
Q 047614 43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLGYLI 82 (231)
Q Consensus 43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~ 82 (231)
+|+|||+| . +|+...+...+..+|......-...
T Consensus 229 ~E~knP~r~i------PrAi~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 229 GESEDPAKNI------PRAVRQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HHhcCHHHHH------HHHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999965 6 9999999999999999876544333
No 34
>PRK10238 aromatic amino acid transporter; Provisional
Probab=92.72 E-value=4.2 Score=37.43 Aligned_cols=27 Identities=11% Similarity=-0.017 Sum_probs=21.6
Q ss_pred cCCCCccc-ccccccCccchHhHHHHHHHHhhhh
Q 047614 43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTM 75 (231)
Q Consensus 43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~ 75 (231)
+|+|||+| . +|+...+.....+.|...
T Consensus 224 eE~knP~r~i------PrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 224 AEADNPEQSI------PKATNQVIYRILIFYIGS 251 (456)
T ss_pred HhhcChhhHH------HHHHHHHHHHHHHHHHHH
Confidence 99999965 6 899988887777777654
No 35
>PRK11387 S-methylmethionine transporter; Provisional
Probab=92.70 E-value=2.8 Score=38.64 Aligned_cols=31 Identities=6% Similarity=0.019 Sum_probs=26.2
Q ss_pred cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhh
Q 047614 43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLG 79 (231)
Q Consensus 43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~G 79 (231)
+|+|||+| . +|+...+......+|+......
T Consensus 230 ~E~knP~r~i------PrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 230 GETENPAKVI------PVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHhcChhhHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999965 6 9999999999999998876543
No 36
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=92.31 E-value=4.9 Score=37.60 Aligned_cols=28 Identities=0% Similarity=-0.123 Sum_probs=23.6
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMA 76 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g 76 (231)
+|+|||+ ++ +|+...+...+..+|....
T Consensus 218 ~E~knP~r~~------PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 218 NELENPGRDY------PLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHccCCcccc------cHHHHHHHHHHHHHHHHHH
Confidence 9999995 58 9999999998888887543
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=92.00 E-value=4.9 Score=36.59 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=24.2
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAV 77 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~ 77 (231)
+|+|||+ +. +|+...+...+..+|+..-.
T Consensus 215 eE~k~P~r~i------prai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 215 EETKNPKRDI------PRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHhcCccccc------CHHHHHHHHHHHHHHHHHHH
Confidence 8999995 56 99999999988888876644
No 38
>TIGR00930 2a30 K-Cl cotransporter.
Probab=91.94 E-value=4.9 Score=40.74 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=26.7
Q ss_pred cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhh
Q 047614 43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVL 78 (231)
Q Consensus 43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~ 78 (231)
.|+|||+| . +++...+..+++++|+.+.+.
T Consensus 304 gElKnP~r~I------Pratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 304 GDLKDPQKAI------PKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HhccChhhhh------HHHHHHHHHHHHHHHHHHHHH
Confidence 89999965 6 999999999999999999753
No 39
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=91.90 E-value=2.6 Score=39.99 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=27.2
Q ss_pred cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhh
Q 047614 43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLG 79 (231)
Q Consensus 43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~G 79 (231)
+|.|||+| . +++...+..+++.+|+.+...-
T Consensus 255 eE~knP~r~i------P~aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 255 EEVKNPQRAI------PIGIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred HhccCccccc------cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999965 7 9999999999999999887653
No 40
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=91.41 E-value=3.2 Score=38.56 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=27.3
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGY 80 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY 80 (231)
+|+|||+ +. +|+...+...+..+|+.....-.
T Consensus 259 ~E~knP~r~i------PrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 259 EEVKNPYRTL------PIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred HHhcCchhhh------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 57 99999999999999999865443
No 41
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=90.99 E-value=4.9 Score=36.74 Aligned_cols=32 Identities=6% Similarity=-0.073 Sum_probs=25.2
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGY 80 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY 80 (231)
+|+|||+ +. +|+...+......+|+.......
T Consensus 225 ~E~k~P~r~i------PrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 225 AESSNPIKSI------TRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred HhhcChhhHH------HHHHHHHHHHHHHHHHHHHHHHe
Confidence 9999996 57 99998888888888887655433
No 42
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=90.65 E-value=4.7 Score=37.46 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=25.6
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhh
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVL 78 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~ 78 (231)
+|+|||+ +. +|+...+...+..+|....+.
T Consensus 235 ~E~~~p~~~~------p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 235 DKTENPEKNF------PKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred HhccCCCccc------cHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 57 999999999999999976443
No 43
>PRK10580 proY putative proline-specific permease; Provisional
Probab=90.22 E-value=11 Score=34.55 Aligned_cols=30 Identities=3% Similarity=-0.054 Sum_probs=23.2
Q ss_pred cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhh
Q 047614 43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVL 78 (231)
Q Consensus 43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~ 78 (231)
+|+|||+| . +|+...+......+|......
T Consensus 223 ~E~knP~k~i------PrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 223 GEAKDPEKSI------PRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHhcChhhHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999976 6 888888877777777766443
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=89.93 E-value=11 Score=34.16 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=32.2
Q ss_pred cCCCCc-ccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCC
Q 047614 43 ISKSTK-KQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQ 85 (231)
Q Consensus 43 ~~m~~p-~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~ 85 (231)
+|+||| ++. +|+...+...+..+|......-....++
T Consensus 225 ~E~knp~r~i------p~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 225 EEVKNPKRTI------PRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHhcCccccc------cHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 999999 566 9999999999999999998877777665
No 45
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=89.42 E-value=3.1 Score=36.73 Aligned_cols=137 Identities=12% Similarity=0.175 Sum_probs=79.4
Q ss_pred cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhh-------HhhccCCCchhHHH---HHHHHHHH
Q 047614 43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQ-------VTLNLATEQVSSKV---VIYTILAG 112 (231)
Q Consensus 43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~-------il~n~~~~~~~~~~---~~~~~~i~ 112 (231)
.++|||++. +|+...+......+|...-...-..+|.+..++ ..+...-.++..++ ....-...
T Consensus 203 ~~~~~~~~~------~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~ 276 (359)
T TIGR00912 203 PLLSKKKKI------KKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFI 276 (359)
T ss_pred HHhCChhhh------HHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 778899998 999999999999999999888888888654332 11222111222221 11223356
Q ss_pred hhhhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccchhHHHHhhh---hHHHHHHHHhhhhhhhh
Q 047614 113 PIAKYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSG---AFLIVAVSFLLPCVCYL 189 (231)
Q Consensus 113 ~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~liG---a~~~~~l~fi~P~~~~l 189 (231)
...+..+..+.....+++.++.++. +. ...-... ....++ ..||-..-..... ...+....+++|.++.+
T Consensus 277 ~f~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~ 349 (359)
T TIGR00912 277 IFVKIAFYLYIAVKGLSKLFKKRKY--SI--LILPVLM--VIFSIS-FFPDSSNQLFDYLEFLPIIAIVFFLLLPLILFI 349 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCc--ch--hHHHHHH--HHHHHH-HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777777788887776532 11 1111111 122222 3455222222222 23345677789998877
Q ss_pred hhh
Q 047614 190 KIF 192 (231)
Q Consensus 190 ~~~ 192 (231)
...
T Consensus 350 i~~ 352 (359)
T TIGR00912 350 IVK 352 (359)
T ss_pred HHH
Confidence 765
No 46
>PRK15049 L-asparagine permease; Provisional
Probab=88.41 E-value=14 Score=34.58 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=26.7
Q ss_pred cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhhhhh
Q 047614 43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLGYLI 82 (231)
Q Consensus 43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~ 82 (231)
+|+|||+| . +|+...+.....++|+.....-...
T Consensus 244 eE~knP~r~i------PrAi~~~~~~i~~~yi~~~~~~~~~ 278 (499)
T PRK15049 244 GECKDPQTMV------PKAINSVIWRIGLFYVGSVVLLVML 278 (499)
T ss_pred HHhcChhhHH------HHHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999975 6 9999998888888888766554433
No 47
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=82.93 E-value=37 Score=31.45 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=73.7
Q ss_pred cCCCCcc--cccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCc-hhhHhhccCCCchhHHHHHHHHHHHhhhhhcc
Q 047614 43 ISKSTKK--QVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNV-QSQVTLNLATEQVSSKVVIYTILAGPIAKYAL 119 (231)
Q Consensus 43 ~~m~~p~--~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~-~~~il~n~~~~~~~~~~~~~~~~i~~~~sypl 119 (231)
+-+|+|+ |. -.....+......+-...|...-.+=|+.- ..+....+.. ....+.+...++.+.+=..
T Consensus 218 Ry~~~~t~~~~------~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~ 288 (442)
T COG1457 218 RYAPSPTPSKA------FLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNAN 288 (442)
T ss_pred hhcCCCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcH
Confidence 5566666 65 456677777777778888888888888876 3344444422 2334445555666666666
Q ss_pred chhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHh----hccchhHHHHhhhhHHHHHHHHhh
Q 047614 120 TVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAA----VFPSFQSVTSLSGAFLIVAVSFLL 183 (231)
Q Consensus 120 ~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~----~iP~~~~v~~liGa~~~~~l~fi~ 183 (231)
++++.--++.+..++- +|..+....... ..+++|. +..+++.++.++|+.........+
T Consensus 289 nlYsa~ls~~~i~~~l---~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~i 351 (442)
T COG1457 289 NLYSAGLSFANIIPKL---SKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMI 351 (442)
T ss_pred HHHHHHHHHHHhhhhh---hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555544432 223332222221 2233333 456788888888888855555444
No 48
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=79.04 E-value=26 Score=32.19 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhhhcc---c-CCchHHHHHHHHHHHHHHH
Q 047614 139 CKSASILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIFQV---H-RNWGYELIGILIIMLLVVF 214 (231)
Q Consensus 139 ~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~~~~---~-~~~~~~~~~~~~i~~~Gi~ 214 (231)
.+.+|...|....+.+..+....-+.+.++.+.+.+.+..+-+..+++..+..+|+ + +.++|.+...|.+.++=..
T Consensus 323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i~~ 402 (416)
T COG1914 323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILIVA 402 (416)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHHHH
Confidence 34556677766666555555544499999999999998888888888888887765 2 2345666666665555444
Q ss_pred HHHHhHH
Q 047614 215 VGVLGTY 221 (231)
Q Consensus 215 ~~v~Gt~ 221 (231)
..+.=++
T Consensus 403 L~i~li~ 409 (416)
T COG1914 403 LNIILLV 409 (416)
T ss_pred HHHHHHH
Confidence 4444333
No 49
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=75.44 E-value=5.2 Score=36.90 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=38.5
Q ss_pred cCChhhhhhhhhhc-------cC--cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCc
Q 047614 27 LNGIPTALSFYSLV-------EL--ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNV 87 (231)
Q Consensus 27 ~~~~~~~~g~~~fa-------p~--~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~ 87 (231)
+.++..++....|+ .. +|.|||+| . +|+...+.....++|......-=...|.+-
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~I------Pra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTI------PRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCchhhh------hhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 45555555533333 23 99999965 5 899999999999999987776555555443
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=71.90 E-value=52 Score=31.41 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=35.0
Q ss_pred cCChhhhhhhhhhc-------cC--cCCCCcccccccccCccchHhHHHHHHHHhhhhhhh
Q 047614 27 LNGIPTALSFYSLV-------EL--ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVL 78 (231)
Q Consensus 27 ~~~~~~~~g~~~fa-------p~--~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~ 78 (231)
++++...+-+..|+ .+ +|-|||+|=. +++...++..++.+|+...+.
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~I-----P~ai~~s~~ri~~~Yi~~~~~ 286 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAI-----PKAIKQSLLRILLFYILSSIV 286 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccc-----cHHHHHHHHHHHHHHHHHHHH
Confidence 56666665555554 22 8899996542 999999999999999988764
No 51
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=70.71 E-value=41 Score=30.80 Aligned_cols=134 Identities=15% Similarity=0.106 Sum_probs=66.6
Q ss_pred cC--cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhh----cCCCchhh--HhhccCCCchhHHHHH------
Q 047614 41 EL--ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLI----YGQNVQSQ--VTLNLATEQVSSKVVI------ 106 (231)
Q Consensus 41 p~--~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~----fG~~~~~~--il~n~~~~~~~~~~~~------ 106 (231)
|+ +-+|+|++- .+....++.........+|+.+-.. +|+..-++ +...+... .......
T Consensus 228 ~DysRy~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~-~~~~~~~~~~f~~ 300 (442)
T TIGR00800 228 PDFTRFGKSKKTA------IWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGL-TYAVGARAVFGFG 300 (442)
T ss_pred hhhhhhcCCccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhccc-chhhhHHHHHHHH
Confidence 55 666776655 4556667777777777777777665 88664333 33333222 1111111
Q ss_pred HHHHHHhh-hhhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHH--HHHHHHHHhhccchhHHHHhhhhHHHHHHHHhh
Q 047614 107 YTILAGPI-AKYALTVMPIATAIENRLPANYKDCKSASILIRMSL--LVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLL 183 (231)
Q Consensus 107 ~~~~i~~~-~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~--~~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~ 183 (231)
++..+..+ ..-..+.+|.-.++.+.+++..+.++ ...+...+ ++....+..+.+.+.++++++|...+......+
T Consensus 301 ~~~vl~~~~t~~~~N~ys~~l~l~~l~~~~~~~~r--~~~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI~l 378 (442)
T TIGR00800 301 FCFVVAQLSTNISANSYSAGLDIAALLPKYIKIKR--GSLICAIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGVMI 378 (442)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHhCcCccccch--HHHHHHHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222 23334455655566666554322112 11111111 111111222334677799999998877666655
No 52
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=70.22 E-value=10 Score=31.91 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhccchhHHHHhh---------hhHHHHHHHHhhhhhhhhhhhccc----CCchHHHHHHHHHHHHHHHH
Q 047614 149 SLLVSTVVLAAVFPSFQSVTSLS---------GAFLIVAVSFLLPCVCYLKIFQVH----RNWGYELIGILIIMLLVVFV 215 (231)
Q Consensus 149 ~~~~~~~~iA~~iP~~~~v~~li---------Ga~~~~~l~fi~P~~~~l~~~~~~----~~~~~~~~~~~~i~~~Gi~~ 215 (231)
...+.++.+|..++-++.++.++ ||.+|.-++++= |..+.+.+ +.-..++++.|+++++|.++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 34445566666677666666554 788887777776 66665432 11123577889999999999
Q ss_pred HHHhHHHHH
Q 047614 216 GVLGTYSSI 224 (231)
Q Consensus 216 ~v~Gt~~si 224 (231)
..-|+++=+
T Consensus 237 ~lr~~i~Yi 245 (262)
T KOG4812|consen 237 FLRGFINYI 245 (262)
T ss_pred HHHHHHhHH
Confidence 999987543
No 53
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=67.46 E-value=13 Score=30.38 Aligned_cols=65 Identities=9% Similarity=0.019 Sum_probs=51.0
Q ss_pred hHHHHhhhhHHHHHHHHhhhhhhhhhhhccc-------C--CchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 047614 165 QSVTSLSGAFLIVAVSFLLPCVCYLKIFQVH-------R--NWGYELIGILIIMLLVVFVGVLGTYSSIAQTVK 229 (231)
Q Consensus 165 ~~v~~liGa~~~~~l~fi~P~~~~l~~~~~~-------~--~~~~~~~~~~~i~~~Gi~~~v~Gt~~si~~l~~ 229 (231)
....-+.|++.+.-+..++|+.+.+...|++ + -++.....+.+...+|++++++....|...+.|
T Consensus 44 s~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 44 SCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred chhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445567888888899999999999998763 0 134566778888899999999999988888775
No 54
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=65.57 E-value=1.1e+02 Score=28.09 Aligned_cols=36 Identities=6% Similarity=0.105 Sum_probs=26.1
Q ss_pred cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhhhhhcC
Q 047614 43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLGYLIYG 84 (231)
Q Consensus 43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG 84 (231)
+|+|||+| . +|+...+..+...+|...-+.-....+
T Consensus 237 eE~knP~r~i------Prai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 237 EETKNPRRVA------PRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHhcCcchhh------hHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999965 5 999999999887766655554444334
No 55
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=63.74 E-value=12 Score=30.22 Aligned_cols=103 Identities=10% Similarity=0.115 Sum_probs=63.7
Q ss_pred eecCcccCCCccccccCChhhhhhhhhhc--cC---cCC---CCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhc
Q 047614 12 ATKGVGFHGKGRLFNLNGIPTALSFYSLV--EL---ISK---STKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIY 83 (231)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~g~~~fa--p~---~~m---~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~f 83 (231)
.++|..+++....+||.-+.+.+|..... .+ +.. +.+++. +|.++...-....+...+|+..-..+
T Consensus 22 ~rgG~~w~~~~~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~------~K~~H~~L~~~Al~~~vvGl~avf~~ 95 (179)
T cd08762 22 WRGGFAWDGSSKNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLP------WKLLHAGLLLLAFILTVIGLCAVFNF 95 (179)
T ss_pred cCCccCCCCCCCceeehHHHHHHHHHHHHHHHHHhhcccccccccchh------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677777655688899888888833332 11 211 235555 67889999888988888888655554
Q ss_pred CCCchhhHhhccCC-CchhHHHHHHHHHHHhhhhhccchhh
Q 047614 84 GQNVQSQVTLNLAT-EQVSSKVVIYTILAGPIAKYALTVMP 123 (231)
Q Consensus 84 G~~~~~~il~n~~~-~~~~~~~~~~~~~i~~~~sypl~~~p 123 (231)
=|+. .+ .|+.+ +.|....+..++.++.+.++.....|
T Consensus 96 hn~~--~~-~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 96 HNVH--HT-ANLYSLHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred cccc--Cc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4432 22 44432 44444444456667777777766655
No 56
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=62.12 E-value=14 Score=30.76 Aligned_cols=112 Identities=11% Similarity=0.142 Sum_probs=67.2
Q ss_pred EEEEEee-eecCcccCCCccccccCChhhhhhhhhhc----cC-cCCCCc-ccccccccCccchHhHHHHHHHHhhhhhh
Q 047614 5 VCVFFVG-ATKGVGFHGKGRLFNLNGIPTALSFYSLV----EL-ISKSTK-KQVIVACSGNQVLLISFAICTITYPTMAV 77 (231)
Q Consensus 5 ~~i~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~fa----p~-~~m~~p-~~~~~~~~~~~v~~~a~~~~~~~y~~~g~ 77 (231)
+..+|.+ .++|..++++...+||.-+.+..|...+. -. +..+++ ++. .|.+++..-....+...+|+
T Consensus 3 l~~~W~~~~rgG~~~~~~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~------~k~~H~~L~~lAl~~~ivGl 76 (214)
T cd08764 3 LVGIWLGKFRGGFSWTGPGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKR------LKLLHAVLHLLAFILAVIGL 76 (214)
T ss_pred EEeehHHHcCCccccCCCCceEeecHHHHHHHHHHHHHHHHHHhccCccccchh------hHHHHHHHHHHHHHHHHHHH
Confidence 3344443 35778887755678999999999854443 12 444433 334 56788888888888888886
Q ss_pred hhhhhcCCCchhhHhhccCC-CchhHHHHHHHHHHHhhhhhccchhh
Q 047614 78 LGYLIYGQNVQSQVTLNLAT-EQVSSKVVIYTILAGPIAKYALTVMP 123 (231)
Q Consensus 78 ~GY~~fG~~~~~~il~n~~~-~~~~~~~~~~~~~i~~~~sypl~~~p 123 (231)
..-..+=|+.+.++ .|+.+ +.+..-.+.+++.++.+.++..+++|
T Consensus 77 ~avf~~hn~~~~~~-~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P 122 (214)
T cd08764 77 KAVFDSHNLAKPPI-PNMYSLHSWLGLTAVILFSLQWVGGFVSFLFP 122 (214)
T ss_pred HHHHHHHhcccCCC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44333333332232 34432 44444455566667777777666666
No 57
>PRK11375 allantoin permease; Provisional
Probab=61.47 E-value=1.2e+02 Score=28.35 Aligned_cols=131 Identities=14% Similarity=0.169 Sum_probs=60.8
Q ss_pred cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhh----hhhcCCCchhh--HhhccCCCchhHHHHHHHHHHHhhhh
Q 047614 43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLG----YLIYGQNVQSQ--VTLNLATEQVSSKVVIYTILAGPIAK 116 (231)
Q Consensus 43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~G----Y~~fG~~~~~~--il~n~~~~~~~~~~~~~~~~i~~~~s 116 (231)
+-.|+|++- .+.-.+++.+...+...+|+.. ...+|+...|+ +..+.++ ....-.+.+...++...+
T Consensus 252 Ry~k~~~~~------~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v~a~~~t 324 (484)
T PRK11375 252 QNAHSFRAQ------ALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-LFASFFAVLVILMTTIST 324 (484)
T ss_pred cccCChhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHHHHHHHH
Confidence 444565544 3333444444444443333332 45667655432 3333321 122222333333444444
Q ss_pred -hccchhhHHHHHHhhCCCCCCCcchhHHHHH---HHHHHHHHHHHhhccchhHHHHhhhhHHHHHHHHhh
Q 047614 117 -YALTVMPIATAIENRLPANYKDCKSASILIR---MSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLL 183 (231)
Q Consensus 117 -ypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r---~~~~~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~ 183 (231)
-.-+..|.-.++.+.++++-+ .+|...- +..++....+-.....|.+++++.|++.+.....++
T Consensus 325 N~~~N~ys~~~~l~~l~pk~i~---~~~~~~i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi 392 (484)
T PRK11375 325 NATGNIIPAGYQIAALAPTKLT---YKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMM 392 (484)
T ss_pred HHHhhcccHHHHHHHhCcCccc---hhhHHHHHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667766677777765422 1222111 111111111111123388999999999877766665
No 58
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=60.08 E-value=1.3e+02 Score=27.03 Aligned_cols=127 Identities=13% Similarity=0.059 Sum_probs=65.8
Q ss_pred cC--cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhhHhhccCCCchhHHHHHHHHHHHhhhhhc
Q 047614 41 EL--ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLATEQVSSKVVIYTILAGPIAKYA 118 (231)
Q Consensus 41 p~--~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~syp 118 (231)
|+ +-.|+|+|- .+....+......+-..+|...-.+.|+.-..++.... + ....+.+...++...+-.
T Consensus 193 ~DysRy~k~~~~~------~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~--g--~~~~~~~~~~l~~~~~n~ 262 (386)
T TIGR02358 193 ADYTRFARNPRHV------FLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGA--G--LGIPALLIILLSTVTTTF 262 (386)
T ss_pred cchhhhcCCCcce------ehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc--c--HHHHHHHHHHHhHHHHHH
Confidence 56 556666665 55666777777788888888777776654222222222 1 111222333344444445
Q ss_pred cchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHh--hccchhHHHHhhhhHHHHHHHHhh
Q 047614 119 LTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAA--VFPSFQSVTSLSGAFLIVAVSFLL 183 (231)
Q Consensus 119 l~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~--~iP~~~~v~~liGa~~~~~l~fi~ 183 (231)
.+.++.-.++.+.+++- + +.++..+. ..+...++. ....+.+++++.|...+......+
T Consensus 263 ~N~ys~~l~l~~l~~~~-~--~~~~~~i~---~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~i 323 (386)
T TIGR02358 263 MDIYSAAISTGNLLPRL-K--VKHLAIGV---GVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVVF 323 (386)
T ss_pred HHHHHHHHHHHHHHHhh-c--chHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666555555554321 1 12222111 111122222 235688888888888866655554
No 59
>PLN02680 carbon-monoxide oxygenase
Probab=57.01 E-value=20 Score=30.23 Aligned_cols=102 Identities=11% Similarity=0.174 Sum_probs=65.1
Q ss_pred ecCcccCC--CccccccCChhhhhhhhhhc----cC-cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCC
Q 047614 13 TKGVGFHG--KGRLFNLNGIPTALSFYSLV----EL-ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQ 85 (231)
Q Consensus 13 ~~~~~~~~--~~~~~~~~~~~~~~g~~~fa----p~-~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~ 85 (231)
++|..|++ +...+||.-+.+..|...+. -. +..+.+++. +|.+++..-....+...+|+..-..+-|
T Consensus 33 rgG~aw~~~~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~------~K~iH~~L~~lA~~l~vvGl~avfk~hn 106 (232)
T PLN02680 33 RGGLALSSDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNL------KKLVHLTLQFLAFCLSLIGVWAALKFHN 106 (232)
T ss_pred CccccccCCCCcceEechHHHHHHHHHHHHHHHHhccccccccchh------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45665643 33478999999999944443 22 444555666 7789999999999988999855444433
Q ss_pred CchhhHhhccCC-CchhHHHHHHHHHHHhhhhhccchhh
Q 047614 86 NVQSQVTLNLAT-EQVSSKVVIYTILAGPIAKYALTVMP 123 (231)
Q Consensus 86 ~~~~~il~n~~~-~~~~~~~~~~~~~i~~~~sypl~~~p 123 (231)
+ +++ .|+.+ +.|....+.+++.++.+.++..+.+|
T Consensus 107 ~--~~~-~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 107 E--KGI-DNFYSLHSWLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred c--cCc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3 233 34432 44544455566677777777766666
No 60
>PLN02810 carbon-monoxide oxygenase
Probab=53.04 E-value=18 Score=30.35 Aligned_cols=103 Identities=14% Similarity=0.174 Sum_probs=65.3
Q ss_pred eecCcccCCC--ccccccCChhhhhhhhhhc--cC---cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcC
Q 047614 12 ATKGVGFHGK--GRLFNLNGIPTALSFYSLV--EL---ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYG 84 (231)
Q Consensus 12 ~~~~~~~~~~--~~~~~~~~~~~~~g~~~fa--p~---~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG 84 (231)
.++|..|++. +..+||.-+.+.+|..... .+ +..+.+++. +|.+++..-....+...+|+..-..+=
T Consensus 32 ~rgG~aw~~~~~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~------~K~iH~~lh~~Al~l~vvGl~Avf~~H 105 (231)
T PLN02810 32 YRGGLAWEATNKNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEV------KKLIHLVLHAIALILGIFGICAAFKNH 105 (231)
T ss_pred cCCcccccCCCCCceeeehHHHHHHHHHHHhhHHHHHhhccccccch------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777643 4478999999999844333 22 555555666 788999999999988888885544443
Q ss_pred CCchhhHhhccCC-CchhHHHHHHHHHHHhhhhhccchhh
Q 047614 85 QNVQSQVTLNLAT-EQVSSKVVIYTILAGPIAKYALTVMP 123 (231)
Q Consensus 85 ~~~~~~il~n~~~-~~~~~~~~~~~~~i~~~~sypl~~~p 123 (231)
| ++.+ .|+.+ +.|....+..++.++-+.++-..++|
T Consensus 106 n--~~~i-~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P 142 (231)
T PLN02810 106 N--ESGI-ANLYSLHSWLGIGIISLYGIQWIYGFIVFFFP 142 (231)
T ss_pred c--ccCC-CceeeHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3 2333 45543 44544444455666766766655655
No 61
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=52.64 E-value=31 Score=29.13 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=70.5
Q ss_pred eecCcccCCCc-cccccCChhhhhhhhhhc--cC---cCC-CCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcC
Q 047614 12 ATKGVGFHGKG-RLFNLNGIPTALSFYSLV--EL---ISK-STKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYG 84 (231)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~fa--p~---~~m-~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG 84 (231)
..+|..|++.+ ..+|+..+.+.+|.+-+. .+ +.- .+.++. +|.++...-++.++..++|+..-..+=
T Consensus 41 yr~Glaw~~~~~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~------~KliH~~LH~~Alvl~i~gl~avf~~h 114 (245)
T KOG1619|consen 41 YRGGLAWSSSPNKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKV------SKLIHLGLHIIALVLAIIGLCAVFDSH 114 (245)
T ss_pred cCCccCCCCCcchhcCcchHHHHHHHHHhccceeeeeehhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677787766 678899999999954443 33 442 345677 899999999999999999988777766
Q ss_pred CCchhhHhhccCC-CchhHHHHHHHHHHHhhhhhccchhh
Q 047614 85 QNVQSQVTLNLAT-EQVSSKVVIYTILAGPIAKYALTVMP 123 (231)
Q Consensus 85 ~~~~~~il~n~~~-~~~~~~~~~~~~~i~~~~sypl~~~p 123 (231)
++.. ..|+.+ +.|..-.+..++..+-..+|--+++|
T Consensus 115 n~~~---i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~p 151 (245)
T KOG1619|consen 115 NLVG---IANFYSLHSWLGLCVVILYSLQWVFGFFTFLFP 151 (245)
T ss_pred hhcC---ccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6555 445533 44544445556666666666666655
No 62
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=51.20 E-value=34 Score=26.90 Aligned_cols=101 Identities=10% Similarity=0.240 Sum_probs=62.0
Q ss_pred CcccCCCccccccCChhhhhh-hhhhc-cC---c---CCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCC
Q 047614 15 GVGFHGKGRLFNLNGIPTALS-FYSLV-EL---I---SKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQN 86 (231)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g-~~~fa-p~---~---~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~ 86 (231)
|-.|++.+..+||.-+.+..| ++..+ .+ + ..+.+++. +|.+.+..-....+-.++|+..-..+=++
T Consensus 2 g~~w~~~~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~------~k~iH~~L~~~a~~~~i~Gl~avf~~hn~ 75 (153)
T cd08765 2 GLGWDGGAAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLL------MKLIHAGLHILAFILAIISVVAVFVFHNA 75 (153)
T ss_pred CCCCCCCCCeeechHHHHHHHHHHHHHHHHHHhcccccccccchh------hHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 456765566889999999988 33332 11 1 11223445 67788888888888888888544443332
Q ss_pred chhhHhhccCC-CchhHHHHHHHHHHHhhhhhccchhhH
Q 047614 87 VQSQVTLNLAT-EQVSSKVVIYTILAGPIAKYALTVMPI 124 (231)
Q Consensus 87 ~~~~il~n~~~-~~~~~~~~~~~~~i~~~~sypl~~~p~ 124 (231)
.++ .|+.+ +.|..-.+.+++.++.+.++..+++|-
T Consensus 76 --~~~-~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 76 --KNI-PNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred --cCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 222 34433 444444555667778888888777774
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=50.40 E-value=1.9e+02 Score=25.94 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=20.9
Q ss_pred CCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhh
Q 047614 44 SKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLI 82 (231)
Q Consensus 44 ~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~ 82 (231)
..|++++- +|...++.......+....+.|..+
T Consensus 228 a~ks~~~~------r~~~~~~~~~~~~~~~~~~l~G~~a 260 (407)
T TIGR00813 228 AAKSAKHA------KKGCLISGVLKLLPMFGAVLPGLIA 260 (407)
T ss_pred hcCCHHHH------HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777 7777777666666665554444443
No 64
>PLN02351 cytochromes b561 family protein
Probab=49.02 E-value=23 Score=29.94 Aligned_cols=102 Identities=5% Similarity=-0.026 Sum_probs=61.3
Q ss_pred ecCcccCCCc----cccccCChhhhhhhhhhc--cC---cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhc
Q 047614 13 TKGVGFHGKG----RLFNLNGIPTALSFYSLV--EL---ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIY 83 (231)
Q Consensus 13 ~~~~~~~~~~----~~~~~~~~~~~~g~~~fa--p~---~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~f 83 (231)
++|..+++.+ .+.||.-+.+.+|..... .+ +..+.+++. +|.+++..-....+...+|+.. .|
T Consensus 35 rgG~aw~~~~~~~~iffn~HP~lMviGfi~L~geAILvYR~~~~~~k~------~K~lH~~Lh~~Ali~~vvGl~a--~f 106 (242)
T PLN02351 35 KSSFLPQSTSQEDLVYAVLHPLLMVIGFILISGEAILVHRWLPGSRKT------KKSVHLWLQGLALASGVFGIWT--KF 106 (242)
T ss_pred CCccccCCCCCccceeecccHHHHHHHHHHHHHHHHHHhhcccccchH------HHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 4566666422 234799999888843333 22 656666777 7888888888888777777755 22
Q ss_pred CCCchhhHhhccCC-CchhHHHHHHHHHHHhhhhhccchhhH
Q 047614 84 GQNVQSQVTLNLAT-EQVSSKVVIYTILAGPIAKYALTVMPI 124 (231)
Q Consensus 84 G~~~~~~il~n~~~-~~~~~~~~~~~~~i~~~~sypl~~~p~ 124 (231)
= -+++...|+.+ +.|....+..++.++-+.++.....|-
T Consensus 107 h--~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~ 146 (242)
T PLN02351 107 H--GQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRG 146 (242)
T ss_pred h--cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 12234455533 444444444556667777776655553
No 65
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=47.03 E-value=48 Score=26.02 Aligned_cols=60 Identities=13% Similarity=-0.011 Sum_probs=38.3
Q ss_pred HhhhhHHHHHHHHhhhhhhhhhhhcc-cCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 047614 169 SLSGAFLIVAVSFLLPCVCYLKIFQV-HRNWGYELIGILIIMLLVVFVGVLGTYSSIAQTVK 229 (231)
Q Consensus 169 ~liGa~~~~~l~fi~P~~~~l~~~~~-~~~~~~~~~~~~~i~~~Gi~~~v~Gt~~si~~l~~ 229 (231)
+.+|+-.+....|..|.+.+..-.+. ++.. ..+..-.+.+++|+..++.|+..+-+...+
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~-~~~~~pflSf~lG~~~m~~~~~~~~k~~y~ 93 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKTGAIKGVP-VPRQKPFLSFLLGLGAMMAGSQLAGKYQYN 93 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcccccCCc-CCccCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788899988776652211 1111 111344567788999999999887766553
No 66
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=40.20 E-value=1.3e+02 Score=28.03 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhhhhHHHHHHH--Hhhhhhhhhhhhc
Q 047614 143 SILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVS--FLLPCVCYLKIFQ 193 (231)
Q Consensus 143 ~~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~~~~~l~--fi~P~~~~l~~~~ 193 (231)
-+.+......++.++....| +.++.++=+..+.... ..+=.+-|+|.+|
T Consensus 338 ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 338 AILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777778888888889 6666666555444333 3344567777776
No 67
>PRK00701 manganese transport protein MntH; Reviewed
Probab=39.58 E-value=3.1e+02 Score=25.28 Aligned_cols=90 Identities=19% Similarity=0.143 Sum_probs=38.9
Q ss_pred HHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhc--cchhHHHHhhhhHHHHHHHHhhhh----hhhhhhhccc----CC
Q 047614 128 IENRLPANYKDCKSASILIRMSLLVSTVVLAAVF--PSFQSVTSLSGAFLIVAVSFLLPC----VCYLKIFQVH----RN 197 (231)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~i--P~~~~v~~liGa~~~~~l~fi~P~----~~~l~~~~~~----~~ 197 (231)
.|..++.+.+ .+.+|...|...++....+...- .+...++-+... ...+.+|. ++++..+|+- +.
T Consensus 335 ~~~~l~~~~~-~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aqv----~~~i~LP~~~~~ll~l~~~~~imG~~~~ 409 (439)
T PRK00701 335 MEGFLRLRIP-LWVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQV----VLSFGLPFALIPLLLFTSDRKLMGELVN 409 (439)
T ss_pred HHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHhhccchh
Confidence 4555554433 33455555655555444444432 223333333333 34445554 3333322221 12
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHH
Q 047614 198 WGYELIGILIIMLLVVFVGVLGTYS 222 (231)
Q Consensus 198 ~~~~~~~~~~i~~~Gi~~~v~Gt~~ 222 (231)
+++.+...++..++-++..+...+.
T Consensus 410 ~~~~~~~~~~~~~~i~~l~~~~~~~ 434 (439)
T PRK00701 410 PRWVKIIAWIIAVLIVALNIYLLYQ 434 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444444444333
No 68
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=37.61 E-value=3.1e+02 Score=24.77 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=19.5
Q ss_pred HHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhh
Q 047614 153 STVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKI 191 (231)
Q Consensus 153 ~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~ 191 (231)
.++.++.. .++.++++ +...+.+++|..+-+..
T Consensus 315 ~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 315 FSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred HHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 33444443 66777664 55667777887555444
No 69
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=33.90 E-value=60 Score=25.17 Aligned_cols=94 Identities=11% Similarity=0.127 Sum_probs=56.9
Q ss_pred ccccccCChhhhhhhhhh-c---cC-cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhhHhhccC
Q 047614 22 GRLFNLNGIPTALSFYSL-V---EL-ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQVTLNLA 96 (231)
Q Consensus 22 ~~~~~~~~~~~~~g~~~f-a---p~-~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~~ 96 (231)
...+||.-+.+.+|.... + -. +..+.+++. ++.+.+..-....+..++|+. ..|-++-..+. .|+.
T Consensus 5 ~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~------~k~iH~~l~~la~~~~vvGl~--avf~~~~~~~~-~~~~ 75 (144)
T cd08766 5 GLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREV------QKAVHLTLHLVALVLGIVGIY--AAFKFHNEVGI-PNLY 75 (144)
T ss_pred cceeeccHHHHHHHHHHHHHHHHHHhhccccccch------hHHHHHHHHHHHHHHHHHHHH--HHHHHhcccCc-cccc
Confidence 457888888888884333 2 22 545555666 777899999999888888884 44433322222 2332
Q ss_pred C-CchhHHHHHHHHHHHhhhhhccchhhH
Q 047614 97 T-EQVSSKVVIYTILAGPIAKYALTVMPI 124 (231)
Q Consensus 97 ~-~~~~~~~~~~~~~i~~~~sypl~~~p~ 124 (231)
+ +.|..-.+.+++.++.+.++.-..+|-
T Consensus 76 SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 76 SLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2 344444445556667777766556663
No 70
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=31.85 E-value=2e+02 Score=24.75 Aligned_cols=88 Identities=13% Similarity=0.212 Sum_probs=57.0
Q ss_pred cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCchhh-------HhhccCCCchhHHH---HHHHHHHH
Q 047614 43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQSQ-------VTLNLATEQVSSKV---VIYTILAG 112 (231)
Q Consensus 43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~~~-------il~n~~~~~~~~~~---~~~~~~i~ 112 (231)
..+|||+|. .|....+.......|...-...-..||.+..++ ..+..+-+++..++ -...-...
T Consensus 199 p~~~~~~~~------~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~ 272 (320)
T PF03845_consen 199 PFVKDKKKL------KKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIG 272 (320)
T ss_pred HHcCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 667888888 889999999999988888888888888653322 11222111122221 12233456
Q ss_pred hhhhhccchhhHHHHHHhhCCCCC
Q 047614 113 PIAKYALTVMPIATAIENRLPANY 136 (231)
Q Consensus 113 ~~~sypl~~~p~~~~l~~~~~~~~ 136 (231)
...+..+..+-..+.+.+.++.++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~f~~~~ 296 (320)
T PF03845_consen 273 IFIKISLYLYAASEGLSQLFKLKD 296 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 666677777777788888777654
No 71
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=29.83 E-value=49 Score=20.42 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=22.4
Q ss_pred ccchHhHHHHHHHHhhhhhhhhhhhcCCCc
Q 047614 58 NQVLLISFAICTITYPTMAVLGYLIYGQNV 87 (231)
Q Consensus 58 ~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~ 87 (231)
..+...+..+..++....|..-|.+||.--
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 445666777777777888888889999653
No 72
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=28.24 E-value=63 Score=19.68 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=20.1
Q ss_pred chHhHHHHHHHHhhhhhhhhhhhcCCCc
Q 047614 60 VLLISFAICTITYPTMAVLGYLIYGQNV 87 (231)
Q Consensus 60 v~~~a~~~~~~~y~~~g~~GY~~fG~~~ 87 (231)
+...+..+..++-...|..-|.+||..-
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 3455666777777777888899999643
No 73
>CHL00020 psbN photosystem II protein N
Probab=26.37 E-value=56 Score=19.90 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=21.4
Q ss_pred cchHhHHHHHHHHhhhhhhhhhhhcCCCc
Q 047614 59 QVLLISFAICTITYPTMAVLGYLIYGQNV 87 (231)
Q Consensus 59 ~v~~~a~~~~~~~y~~~g~~GY~~fG~~~ 87 (231)
.+...+..+..++....|..-|.+||.--
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 34566777777777788888889999653
No 74
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=25.58 E-value=7.2e+02 Score=25.22 Aligned_cols=29 Identities=7% Similarity=0.032 Sum_probs=19.9
Q ss_pred cCCCCcccccccccCccchHhHHHHHHHHhhhhh
Q 047614 43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMA 76 (231)
Q Consensus 43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g 76 (231)
.++|||++=. +--...|...+..+|+...
T Consensus 434 GDLkDaQkSI-----PvGTI~AilTTS~vYlssv 462 (1075)
T KOG2082|consen 434 GDLKDAQKSI-----PVGTIAAILTTSFVYLSSV 462 (1075)
T ss_pred ccccchhhcC-----chhhhHHHHHHHHHHHHHH
Confidence 7789998752 5556667777777776544
No 75
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=24.75 E-value=2.4e+02 Score=21.82 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhh
Q 047614 144 ILIRMSLLVSTVVLAAVFPSFQSVTSLS 171 (231)
Q Consensus 144 ~~~r~~~~~~~~~iA~~iP~~~~v~~li 171 (231)
........+........+|.++.+++..
T Consensus 128 l~~~~~~~~~l~~~i~~~P~~~~~f~~~ 155 (182)
T PF00689_consen 128 LLIAILISIALQILIVYVPGLNRIFGTA 155 (182)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHST--
T ss_pred HHHHHHHHHHHHHHHhcchhhHhhhccc
Confidence 3334444444555666778877777655
No 76
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=24.72 E-value=4.5e+02 Score=22.57 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhccchhHHHHhhhhHHHHHHHHhhhhhhhhhhh--cccCCchHHHH
Q 047614 150 LLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPCVCYLKIF--QVHRNWGYELI 203 (231)
Q Consensus 150 ~~~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~~~~l~~~--~~~~~~~~~~~ 203 (231)
+.....++++.+|+++ .+.+-.+.+.++.+.+|+..-++.. ++++....++.
T Consensus 6 ~~~~~~~~~~~~~~~~--~~~lr~~~g~~~vlf~PGy~l~~~lfp~~~~l~~~er~ 59 (287)
T PF07760_consen 6 LLVLLALLAILVPDLN--IPPLRVILGFPFVLFLPGYALVAALFPRKHDLDGIERL 59 (287)
T ss_pred HHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHhccHHHHHHHccCcCCCcHHHHH
Confidence 3344455666678776 6777788888889999999888886 33334555554
No 77
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=24.47 E-value=5.6e+02 Score=23.59 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=23.0
Q ss_pred CCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhh
Q 047614 44 SKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLI 82 (231)
Q Consensus 44 ~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~ 82 (231)
..||+++. +|...++......+++...+.|..+
T Consensus 262 aaks~~~a------~~~~~~~~~~~~~~~~~~~~~G~~~ 294 (483)
T PRK09442 262 SYKDSKAL------HRGIIIGTIVVGFLMFGMHLAGALG 294 (483)
T ss_pred HcCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888 7888887777677777666666433
No 78
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=23.93 E-value=4.5e+02 Score=22.32 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhHH-HHHHHHHHHHHH--------------H------Hhhccc
Q 047614 105 VIYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSASI-LIRMSLLVSTVV--------------L------AAVFPS 163 (231)
Q Consensus 105 ~~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~-~~r~~~~~~~~~--------------i------A~~iP~ 163 (231)
.+.+...+.+.+.|+..+.++..+...+.++.+ +..... .....+...... . ....++
T Consensus 72 lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~~Er-r~~~~~~~~s~~LF~~G~~f~y~~vlP~~~~Fl~~f~~~~~~~~~~ 150 (258)
T PRK10921 72 IKLTFMVSLILSAPVILYQVWAFIAPALYKHER-RLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAKTAPEGVQVSTD 150 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhh
Confidence 356677899999999999888877766665432 111111 111111100000 0 112345
Q ss_pred hhHHHHhhhh-HHHHHHHHhhhhhhhhhhh
Q 047614 164 FQSVTSLSGA-FLIVAVSFLLPCVCYLKIF 192 (231)
Q Consensus 164 ~~~v~~liGa-~~~~~l~fi~P~~~~l~~~ 192 (231)
+++.++++-. ..+.-++|-+|.++.+..+
T Consensus 151 i~~Y~~fv~~~~l~fGl~FelPli~~~L~~ 180 (258)
T PRK10921 151 IASYLSFVMALFMAFGVSFEVPVAIVLLCW 180 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665433 3456688999999988875
No 79
>PRK11403 hypothetical protein; Provisional
Probab=23.48 E-value=3.1e+02 Score=20.32 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047614 174 FLIVAVSFLLPCVCYLKIFQVHRNWGYELIGILIIMLLVVFVGVLGTYSSIAQT 227 (231)
Q Consensus 174 ~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~i~~~Gi~~~v~Gt~~si~~l 227 (231)
..+..+.=.+|+.-+.|..+++.....-.-.++...+.++....+|.+++=..+
T Consensus 36 yf~vL~~GlF~~vs~qk~vrd~~~~~~y~~~cw~~~llsi~LL~vGl~NA~l~l 89 (113)
T PRK11403 36 FLGVLMTATFGNYAYLRAEKLGQLDDFFIHICQLVALITIGLLFIGVLNAPINA 89 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 333445566778888888776523445566788889999999999998774433
No 80
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=23.03 E-value=4.4e+02 Score=23.00 Aligned_cols=25 Identities=16% Similarity=0.497 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Q 047614 205 ILIIMLLVVFVGVLGTYSSIAQTVK 229 (231)
Q Consensus 205 ~~~i~~~Gi~~~v~Gt~~si~~l~~ 229 (231)
...+.+.|++.+..|.+.++....+
T Consensus 280 ~~~l~~~~~~ig~l~s~~s~~r~L~ 304 (309)
T PRK11026 280 CLLLLLVCSMIGWVAAWLATVQHLR 304 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888776654
No 81
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=22.96 E-value=86 Score=28.44 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=55.7
Q ss_pred cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhh----cCCCchhh--HhhccCCCchhHHHHHHHHH-HHhhh
Q 047614 43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLI----YGQNVQSQ--VTLNLATEQVSSKVVIYTIL-AGPIA 115 (231)
Q Consensus 43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~----fG~~~~~~--il~n~~~~~~~~~~~~~~~~-i~~~~ 115 (231)
+.+|++++- .+...++..........+|+.|-.. .+++.-+. ++..+.+..+. .+..+.+. .....
T Consensus 226 Ry~~~~~~~------~~~~~~~~~~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~i~~~~~~~ 298 (440)
T PF02133_consen 226 RYAKSDTSA------WWGFWLGFPGGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGG-FFPALLILFASIWT 298 (440)
T ss_dssp TTC--HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHH-HHHH-HHHHHHHTT
T ss_pred hhCCCCCCc------EEEEeehhhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHH-HHHHHHHHHHHHHH
Confidence 777877766 6667777777777777767666544 33332222 22222111011 11111111 11212
Q ss_pred hhccchhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhccc----hhHHHHhhhhHHHHHHHHhh
Q 047614 116 KYALTVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVFPS----FQSVTSLSGAFLIVAVSFLL 183 (231)
Q Consensus 116 sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~----~~~v~~liGa~~~~~l~fi~ 183 (231)
.--.+.++.-..+.+..+++- ++.++.... .++...........+ +.++++++|.+.+......+
T Consensus 299 ~~~~n~ys~~~~l~~~~~~~~--~~~~~~~~~-~~i~~~~~~~~~~~~~~~~f~~fL~~lg~~~~P~~gI~i 367 (440)
T PF02133_consen 299 NNAANLYSAGLALQNIFPKRI--SRRRGVIIV-GVIGIAIAPWGLLGNFSFLFTNFLSLLGYFLGPWAGIMI 367 (440)
T ss_dssp HHHHHTHHHHHHHHCCSTTT----HHHHHHHH-HHHHHCT-GGGTCCCCHC----HCCCCCHTTHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHccceee--cchHHHHHH-HHHHHHHHHHHHHhchhhhHHHHHHHHHHhchhHHHHHH
Confidence 222344555556666555221 222222222 222211112212233 56688888888877766665
No 82
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=22.73 E-value=3.6e+02 Score=23.50 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 047614 203 IGILIIMLLVVFVGVLGTYSSIAQTVKQ 230 (231)
Q Consensus 203 ~~~~~i~~~Gi~~~v~Gt~~si~~l~~~ 230 (231)
.....++.+|++.+..|.+.++..-.+.
T Consensus 278 ~~~~~l~~~g~~lg~lgs~~s~~r~Lr~ 305 (309)
T TIGR00439 278 GELGLLLGFCIALGVVGAWLATTQHLLC 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777788999999999888776553
No 83
>PRK12488 acetate permease; Provisional
Probab=21.91 E-value=6.8e+02 Score=23.65 Aligned_cols=37 Identities=11% Similarity=0.190 Sum_probs=22.0
Q ss_pred cCCCCcccccccccCccchHhHHHHHHHHh---hhhhhhhhhhcCC
Q 047614 43 ISKSTKKQVIVACSGNQVLLISFAICTITY---PTMAVLGYLIYGQ 85 (231)
Q Consensus 43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y---~~~g~~GY~~fG~ 85 (231)
-..||+++- +|...++......+| ...|..++..+++
T Consensus 285 ~aaks~k~a------r~s~~~~~~~~~~~~~~~~~~G~~a~~l~~~ 324 (549)
T PRK12488 285 FTVSDAREA------RKSVLYATGFIGYFYLLIIVVGFGAIVMVGT 324 (549)
T ss_pred hcCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345777877 777777654444443 4555555665654
No 84
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=21.12 E-value=7.4e+02 Score=23.75 Aligned_cols=41 Identities=12% Similarity=-0.013 Sum_probs=29.4
Q ss_pred cCCCCcccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCCch
Q 047614 43 ISKSTKKQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQNVQ 88 (231)
Q Consensus 43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~~ 88 (231)
+|-||+++- . +|....+..+..++-.++-+.-...-++|..
T Consensus 276 EE~~nAsk~--a---PrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~ 316 (550)
T KOG1289|consen 276 EETKNASKA--A---PRGIISSIAIGFILGWIIIIGIAYTIPDDLD 316 (550)
T ss_pred HHhcchhhh--c---cHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 777888654 1 7778888888887777777666777776544
No 85
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=20.84 E-value=2.9e+02 Score=19.15 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=22.5
Q ss_pred HhhhhHHHHHHHHhhhhhhhhhhhccc
Q 047614 169 SLSGAFLIVAVSFLLPCVCYLKIFQVH 195 (231)
Q Consensus 169 ~liGa~~~~~l~fi~P~~~~l~~~~~~ 195 (231)
++++...+..+++..|+.--++..+++
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~ 28 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSK 28 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 567788899999999999888887554
No 86
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=20.25 E-value=7.4e+02 Score=23.43 Aligned_cols=119 Identities=16% Similarity=0.262 Sum_probs=63.2
Q ss_pred hHhHHHHHHHHhhhhhhhhhhhcCCCchh--hHhhccCCCchhHH-HHHHHHHHHhhhh-hccchhhHHHHHHhhCCCCC
Q 047614 61 LLISFAICTITYPTMAVLGYLIYGQNVQS--QVTLNLATEQVSSK-VVIYTILAGPIAK-YALTVMPIATAIENRLPANY 136 (231)
Q Consensus 61 ~~~a~~~~~~~y~~~g~~GY~~fG~~~~~--~il~n~~~~~~~~~-~~~~~~~i~~~~s-ypl~~~p~~~~l~~~~~~~~ 136 (231)
+-..+.+...+-...+...+..||+...+ ++..+++++.. .. ++.+.+++..+.. ..=+..+.-.++.+.+++.-
T Consensus 281 LPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~-~~fl~~l~~~iati~~Ni~aN~vsp~~D~s~l~Pk~i 359 (497)
T COG1953 281 LPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFY-AAFLAGLTFAVATISTNIAANIVSPGYDLSALFPKYI 359 (497)
T ss_pred hhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchH-HHHHHHHHHHHHHHhhhHHhccCChHHHHHHhccccc
Confidence 44445555555666667789999999654 67888865533 33 3323222222221 22233444445666665532
Q ss_pred CCcchhH---HHHHHHHHHHHHHHHhhccchhHHHHhhhhHHHHHHHHhh
Q 047614 137 KDCKSAS---ILIRMSLLVSTVVLAAVFPSFQSVTSLSGAFLIVAVSFLL 183 (231)
Q Consensus 137 ~~~~~~~---~~~r~~~~~~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~ 183 (231)
. .+| +...+++.+...-+=..--+|-.+++..|++.++....++
T Consensus 360 n---~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmi 406 (497)
T COG1953 360 N---IKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMI 406 (497)
T ss_pred c---hhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1 223 2222223332233333344677788888888888777666
No 87
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.17 E-value=3.5e+02 Score=19.61 Aligned_cols=22 Identities=18% Similarity=0.387 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 047614 203 IGILIIMLLVVFVGVLGTYSSI 224 (231)
Q Consensus 203 ~~~~~i~~~Gi~~~v~Gt~~si 224 (231)
.+...++++|++.++...|.-+
T Consensus 75 ~~tl~~lllGv~~G~~n~w~wi 96 (100)
T TIGR02230 75 SWTLTMLIVGVVIGCLNAWHWV 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888887776544
Done!