Query 047614
Match_columns 231
No_of_seqs 109 out of 1142
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 22:59:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 97.2 0.0018 6.1E-08 57.3 10.2 54 27-86 190-253 (445)
2 4djk_A Probable glutamate/gamm 96.7 0.074 2.5E-06 47.7 16.3 38 43-86 225-263 (511)
3 3gia_A Uncharacterized protein 96.6 0.023 7.8E-07 50.1 12.3 36 43-84 212-248 (444)
4 4b4a_A TATC, SEC-independent p 44.1 1.3E+02 0.0043 24.4 13.3 86 106-192 66-175 (249)
5 2jln_A MHP1; hydantoin, transp 36.5 2.3E+02 0.0077 25.1 10.4 70 109-183 306-378 (501)
6 3dh4_A Sodium/glucose cotransp 23.1 4E+02 0.014 23.6 13.5 35 43-83 246-283 (530)
7 1afo_A Glycophorin A; integral 16.1 1.7E+02 0.0059 16.6 3.4 18 207-224 13-30 (40)
8 3tx3_A Uncharacterized protein 13.8 4.9E+02 0.017 20.7 10.7 30 58-87 30-59 (249)
9 2xq2_A Sodium/glucose cotransp 12.4 7.6E+02 0.026 22.1 11.5 34 43-82 275-311 (593)
10 4f4l_A ION transport protein; 5.3 4.6E+02 0.016 17.8 2.8 24 66-89 11-34 (112)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=97.22 E-value=0.0018 Score=57.33 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=38.2
Q ss_pred cCChhhhhhhhhhc--------cC-cCCCCc-ccccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCC
Q 047614 27 LNGIPTALSFYSLV--------EL-ISKSTK-KQVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQN 86 (231)
Q Consensus 27 ~~~~~~~~g~~~fa--------p~-~~m~~p-~~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~ 86 (231)
+.++..++....|+ .. +|+||| ++. +|+...+.....++|+..........+.+
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~i------p~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNV------PIATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccc------cHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 44555555543343 23 899999 567 99999999999999999988777666643
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.69 E-value=0.074 Score=47.70 Aligned_cols=38 Identities=8% Similarity=-0.039 Sum_probs=32.3
Q ss_pred cCCCCcc-cccccccCccchHhHHHHHHHHhhhhhhhhhhhcCCC
Q 047614 43 ISKSTKK-QVIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQN 86 (231)
Q Consensus 43 ~~m~~p~-~~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~~ 86 (231)
+|+|||+ +. +|+...+...+.++|+...+.-....+++
T Consensus 225 ~E~k~P~k~i------p~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 225 NEMSNPGRDY------PLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp SSSSCCTTTH------HHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HhccCcccch------hHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 9999995 47 99999999999999999888777666643
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.64 E-value=0.023 Score=50.14 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=30.1
Q ss_pred cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhhhhhcC
Q 047614 43 ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLGYLIYG 84 (231)
Q Consensus 43 ~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG 84 (231)
+|+|||+| . +|+...+...+.++|...........+
T Consensus 212 ~e~k~P~r~i------p~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 212 EHIENPKKNV------PRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp GGBSSHHHHH------HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHccCcccch------hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999965 7 999999999999999988776555444
No 4
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=44.07 E-value=1.3e+02 Score=24.37 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=52.7
Q ss_pred HHHHHHHhhhhhccchhhHHHHHHhhCCCCCCCcchhH-HHHHHHHHHHHHHHHhh--------------------cc--
Q 047614 106 IYTILAGPIAKYALTVMPIATAIENRLPANYKDCKSAS-ILIRMSLLVSTVVLAAV--------------------FP-- 162 (231)
Q Consensus 106 ~~~~~i~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~-~~~r~~~~~~~~~iA~~--------------------iP-- 162 (231)
+++...+.+.+.|...+.++..+...+.++.+ +.... ......+.......+.. .|
T Consensus 66 kvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Er-r~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~i~~~~~~ 144 (249)
T 4b4a_A 66 KISLAVGFIIASPVILYQFWRFIEPALYSHEK-RAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYL 144 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCT-TTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTTSSSSTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhHHh
Confidence 45666899999999999999887776666543 22222 22222222222222221 25
Q ss_pred chhHHHHhhhhHH-HHHHHHhhhhhhhhhhh
Q 047614 163 SFQSVTSLSGAFL-IVAVSFLLPCVCYLKIF 192 (231)
Q Consensus 163 ~~~~v~~liGa~~-~~~l~fi~P~~~~l~~~ 192 (231)
++++-++++=.+. ..-++|-+|.++.+..+
T Consensus 145 ~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~ 175 (249)
T 4b4a_A 145 SVDMYISFVLKLVVAFGIAFEMPIVLYVLQK 175 (249)
T ss_dssp EHHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777665544 34589999999888775
No 5
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=36.52 E-value=2.3e+02 Score=25.11 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=33.7
Q ss_pred HHHHhhhhhcc-chhhHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHHHHhhc--cchhHHHHhhhhHHHHHHHHhh
Q 047614 109 ILAGPIAKYAL-TVMPIATAIENRLPANYKDCKSASILIRMSLLVSTVVLAAVF--PSFQSVTSLSGAFLIVAVSFLL 183 (231)
Q Consensus 109 ~~i~~~~sypl-~~~p~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~i--P~~~~v~~liGa~~~~~l~fi~ 183 (231)
..++.+.+=-. +.++.-.++.+..++.- ++ ++..+ ...++.++++... ..+.++++++|.+........+
T Consensus 306 ~~la~i~tn~~~n~ys~~~~l~~~~~~~i--~~-~~~~~--i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~P~~gI~l 378 (501)
T 2jln_A 306 VLLATWSTNPAANLLSPAYTLCSTFPRVF--TF-KTGVI--VSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIMI 378 (501)
T ss_dssp HHHHHHTTHHHHHTHHHHHHHHHHSTTTC--CH-HHHHH--HHHHHHHHTCGGGTHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhCcccc--ch-hHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333332 56666666777654321 11 22111 1122223333221 4577888888888866665554
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=23.10 E-value=4e+02 Score=23.64 Aligned_cols=35 Identities=9% Similarity=0.145 Sum_probs=20.7
Q ss_pred cCCCCcccccccccCccchHhHHHHHHHHh---hhhhhhhhhhc
Q 047614 43 ISKSTKKQVIVACSGNQVLLISFAICTITY---PTMAVLGYLIY 83 (231)
Q Consensus 43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~y---~~~g~~GY~~f 83 (231)
-..||+++- +|...++........ ...|+.++..+
T Consensus 246 laaks~k~a------r~~~~~~~~~~~~~~~~~~~~Gl~a~~~~ 283 (530)
T 3dh4_A 246 LAAKSVSEA------QKGIVFAAFLKLIVPFLVVLPGIAAYVIT 283 (530)
T ss_dssp HSSSCHHHH------HHHHHHHHHHHHHGGGTTHHHHHHHHHHH
T ss_pred HHcCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335777777 676666655544443 34566666555
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=16.07 E-value=1.7e+02 Score=16.56 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 047614 207 IIMLLVVFVGVLGTYSSI 224 (231)
Q Consensus 207 ~i~~~Gi~~~v~Gt~~si 224 (231)
..+++|+..+++|+.-.+
T Consensus 13 ~lII~~vmaGiIG~IllI 30 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLI 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666665444
No 8
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=13.76 E-value=4.9e+02 Score=20.73 Aligned_cols=30 Identities=7% Similarity=-0.010 Sum_probs=18.2
Q ss_pred ccchHhHHHHHHHHhhhhhhhhhhhcCCCc
Q 047614 58 NQVLLISFAICTITYPTMAVLGYLIYGQNV 87 (231)
Q Consensus 58 ~~v~~~a~~~~~~~y~~~g~~GY~~fG~~~ 87 (231)
++.......+..++|.......+...++.+
T Consensus 30 r~~vl~Pllinl~L~~~~~~~~~~~~~~~i 59 (249)
T 3tx3_A 30 RRYVVVPILTNLILFSLAFTWLYGEVDYWL 59 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788877776666544444444433
No 9
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=12.37 E-value=7.6e+02 Score=22.13 Aligned_cols=34 Identities=9% Similarity=0.219 Sum_probs=19.0
Q ss_pred cCCCCcccccccccCccchHhHHHHHHHH---hhhhhhhhhhh
Q 047614 43 ISKSTKKQVIVACSGNQVLLISFAICTIT---YPTMAVLGYLI 82 (231)
Q Consensus 43 ~~m~~p~~~~~~~~~~~v~~~a~~~~~~~---y~~~g~~GY~~ 82 (231)
-+.||+++- +|...++....... ....|+.++..
T Consensus 275 laaks~k~a------r~~~~~~~~~~~~~~~~~~~~Gl~a~~~ 311 (593)
T 2xq2_A 275 LAAKSVSEA------QKGIVFAAFLALIVPFLVVLPGIAAYVI 311 (593)
T ss_dssp HTTSCHHHH------HHHHHHHHHHTTTHHHHHTHHHHHHHHH
T ss_pred heeCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777 66665555443333 34456666655
No 10
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=5.30 E-value=4.6e+02 Score=17.85 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=17.6
Q ss_pred HHHHHHhhhhhhhhhhhcCCCchh
Q 047614 66 AICTITYPTMAVLGYLIYGQNVQS 89 (231)
Q Consensus 66 ~~~~~~y~~~g~~GY~~fG~~~~~ 89 (231)
....+++...++.|...||+.-++
T Consensus 11 ~ll~l~~~ifAi~G~~lFg~~~~~ 34 (112)
T 4f4l_A 11 ALLTVVFYIAAVMATNLYGATFPE 34 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCccc
Confidence 344555667899999999987654
Done!