Query 047614
Match_columns 231
No_of_seqs 109 out of 1142
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 23:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047614.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047614hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wpga4 f.33.1.1 (A:1-124,A:24 11.1 2.7E+02 0.019 22.1 6.9 20 152-171 419-438 (472)
2 d1ciya3 f.1.3.1 (A:33-255) del 7.9 1.4E+02 0.011 21.4 3.4 27 146-172 4-30 (223)
3 d1q90l_ f.23.24.1 (L:) PetL su 6.3 1.7E+02 0.013 14.0 3.0 26 203-228 4-29 (32)
4 d1v54d_ f.23.1.1 (D:) Mitochon 5.1 1.4E+02 0.01 20.3 1.8 44 36-85 58-103 (144)
5 d1ppjd2 f.23.11.1 (D:196-241) 4.1 79 0.0057 17.2 -0.3 8 44-51 2-9 (46)
6 d1q90r_ f.23.12.1 (R:) ISP sub 3.9 3.2E+02 0.023 14.0 2.5 17 171-187 18-34 (39)
7 d1dlca3 f.1.3.1 (A:61-289) del 3.4 3.5E+02 0.026 19.1 3.0 29 153-185 14-42 (229)
8 d2pila_ d.24.1.1 (A:) Pilin Gc 2.6 4.1E+02 0.03 16.3 2.4 12 155-166 15-26 (158)
9 d1j4na_ f.19.1.1 (A:) Aquapori 2.5 6.1E+02 0.045 17.8 3.5 15 64-78 16-30 (249)
10 d2e74d2 f.23.12.1 (D:12-45) IS 1.7 5.9E+02 0.043 12.2 2.2 18 172-189 14-31 (34)
No 1
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=11.09 E-value=2.7e+02 Score=22.13 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=12.7
Q ss_pred HHHHHHHhhccchhHHHHhh
Q 047614 152 VSTVVLAAVFPSFQSVTSLS 171 (231)
Q Consensus 152 ~~~~~iA~~iP~~~~v~~li 171 (231)
....++.+.+|.++++++..
T Consensus 419 ~~l~~~i~yiP~l~~vf~~~ 438 (472)
T d1wpga4 419 MSLHFLILYVDPLPMIFKLK 438 (472)
T ss_dssp HHHHHHHHHSTTTHHHHTCC
T ss_pred HHHHHHHHHhhHHHHHHccc
Confidence 33344556789888877653
No 2
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=7.94 E-value=1.4e+02 Score=21.45 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhh
Q 047614 146 IRMSLLVSTVVLAAVFPSFQSVTSLSG 172 (231)
Q Consensus 146 ~r~~~~~~~~~iA~~iP~~~~v~~liG 172 (231)
+.+.+-+..++++.++|..+.+.++++
T Consensus 4 ~~i~~~~~~~ll~~~iP~~g~~~~li~ 30 (223)
T d1ciya3 4 IDISLSLTQFLLSEFVPGAGFVLGLVD 30 (223)
T ss_dssp HHHHHHHHHHHHHCCSSSHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhcCCchHHHHHHHH
Confidence 345666778888889999988876553
No 3
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.27 E-value=1.7e+02 Score=13.96 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047614 203 IGILIIMLLVVFVGVLGTYSSIAQTV 228 (231)
Q Consensus 203 ~~~~~i~~~Gi~~~v~Gt~~si~~l~ 228 (231)
+.++.=++.|......|.|-.+.+.+
T Consensus 4 i~syvglligal~~tlgiylgllkvv 29 (32)
T d1q90l_ 4 ITSYVGLLIGALVFTLGIYLGLLKVV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888888887665544
No 4
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.12 E-value=1.4e+02 Score=20.28 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=24.4
Q ss_pred hhhhccC-cCCCCccc-ccccccCccchHhHHHHHHHHhhhhhhhhhhhcCC
Q 047614 36 FYSLVEL-ISKSTKKQ-VIVACSGNQVLLISFAICTITYPTMAVLGYLIYGQ 85 (231)
Q Consensus 36 ~~~fap~-~~m~~p~~-~~~~~~~~~v~~~a~~~~~~~y~~~g~~GY~~fG~ 85 (231)
-++|.+. .||++|+. . +.++..++..+.+-..++...-...+++
T Consensus 58 risF~~t~ae~~~p~gew------K~v~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 58 RLKFKESFAEMNRSTNEW------KTVVGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp HHHCSSCHHHHTCCCSHH------HHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHhccccccccCCCCch------hHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3566678 88888854 4 4455544444444444444444445554
No 5
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.10 E-value=79 Score=17.19 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=4.4
Q ss_pred CCCCcccc
Q 047614 44 SKSTKKQV 51 (231)
Q Consensus 44 ~m~~p~~~ 51 (231)
||++++++
T Consensus 2 e~d~RK~m 9 (46)
T d1ppjd2 2 EHDHRKRM 9 (46)
T ss_dssp THHHHHHH
T ss_pred chHHHHHH
Confidence 45555555
No 6
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.86 E-value=3.2e+02 Score=14.02 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHhhhhhh
Q 047614 171 SGAFLIVAVSFLLPCVC 187 (231)
Q Consensus 171 iGa~~~~~l~fi~P~~~ 187 (231)
.|+.+........|-.-
T Consensus 18 ~G~~~~~~~g~l~py~~ 34 (39)
T d1q90r_ 18 AGGAGLPITTLALGYGA 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhccceeE
Confidence 46666666666665443
No 7
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=3.41 E-value=3.5e+02 Score=19.15 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=17.8
Q ss_pred HHHHHHhhccchhHHHHhhhhHHHHHHHHhhhh
Q 047614 153 STVVLAAVFPSFQSVTSLSGAFLIVAVSFLLPC 185 (231)
Q Consensus 153 ~~~~iA~~iP~~~~v~~liGa~~~~~l~fi~P~ 185 (231)
.+.+-++.+|..+.++++++ ..+.+++|.
T Consensus 14 ~~il~~~~~P~~g~~~~~~~----~i~~~lwP~ 42 (229)
T d1dlca3 14 GDLLGVVGFPFGGALVSFYT----NFLNTIWPS 42 (229)
T ss_dssp HHHTTSCBSCCHHHHHHHHH----HHHHHTSSS
T ss_pred HHHHHhcCCCcHHHHHHHHH----HHHHHhCCC
Confidence 33333445798877776543 556777886
No 8
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=2.62 E-value=4.1e+02 Score=16.31 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=5.7
Q ss_pred HHHHhhccchhH
Q 047614 155 VVLAAVFPSFQS 166 (231)
Q Consensus 155 ~~iA~~iP~~~~ 166 (231)
.+.++.+|.+..
T Consensus 15 ILaaia~P~~~~ 26 (158)
T d2pila_ 15 ILAAVALPAYQD 26 (158)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444445555543
No 9
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.48 E-value=6.1e+02 Score=17.78 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=7.1
Q ss_pred HHHHHHHHhhhhhhh
Q 047614 64 SFAICTITYPTMAVL 78 (231)
Q Consensus 64 a~~~~~~~y~~~g~~ 78 (231)
+-.+.+.++..+|+.
T Consensus 16 aEf~gTfllvf~~~g 30 (249)
T d1j4na_ 16 AEFLAMILFIFISIG 30 (249)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445444444443
No 10
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.70 E-value=5.9e+02 Score=12.19 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhhhhhh
Q 047614 172 GAFLIVAVSFLLPCVCYL 189 (231)
Q Consensus 172 Ga~~~~~l~fi~P~~~~l 189 (231)
|+..+..+.-.+|..=|.
T Consensus 14 gt~tg~alg~lypvvkyf 31 (34)
T d2e74d2 14 GTVTGVALGALYPLVKYF 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhHHhhc
Done!