BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047616
         (144 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Y09|A Chain A, The Cyanobacterial Pp2c-Like Phosphatase Tppha Requires
           Three Metals In The Catalytic Center For Efficient
           Catalysis
          Length = 240

 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 12/57 (21%)

Query: 77  AFVKDQKFQSFF---------AKGCVLLHISVAVWRVYIEINLDDLAHDC---LRQV 121
           AF  D+K Q FF         A G     ++V   R Y+E +L+DL HD    LRQ 
Sbjct: 19  AFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQA 75


>pdb|2XZV|A Chain A, The Cyanobacterial Pp2c-Like Phosphatase Tppha Requires
           Three Metals In The Catalytic Center For Efficient
           Catalysis
          Length = 240

 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 12/57 (21%)

Query: 77  AFVKDQKFQSFF---------AKGCVLLHISVAVWRVYIEINLDDLAHDC---LRQV 121
           AF  D+K Q FF         A G     ++V   R Y+E +L+DL HD    LRQ 
Sbjct: 19  AFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQA 75


>pdb|2J82|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha
           From Thermosynechococcus Elongatus
 pdb|2J86|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha
           Of Thermosynechococcus Elongatus
 pdb|2J86|B Chain B, Structural Analysis Of The Pp2c Family Phosphatase Tppha
           Of Thermosynechococcus Elongatus
          Length = 240

 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 12/57 (21%)

Query: 77  AFVKDQKFQSFF---------AKGCVLLHISVAVWRVYIEINLDDLAHDC---LRQV 121
           AF  D+K Q FF         A G     ++V   R Y+E +L+DL HD    LRQ 
Sbjct: 19  AFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQA 75


>pdb|1F5Q|B Chain B, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
           Complexed To Human Cyclin Dependent Kinase 2
 pdb|1F5Q|D Chain D, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
           Complexed To Human Cyclin Dependent Kinase 2
          Length = 252

 Score = 26.9 bits (58), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 73  LFMVAFVKDQKFQSFFAKGCVLLHISVAVWRVYIEINLDDLAHDCLRQVVGDIVLALSWV 132
           LF+   +  + +QS  A   V LHI+  V R Y+ I    LA+ C      D +L L   
Sbjct: 80  LFLSTRIDRENYQSTAA---VALHIAGKV-RAYMPIKATQLAYLCGGATTADKLLTLEVK 135

Query: 133 FLLVYSW 139
            L   SW
Sbjct: 136 SLDTLSW 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.333    0.146    0.461 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,937,450
Number of Sequences: 62578
Number of extensions: 132385
Number of successful extensions: 373
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 4
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 46 (22.3 bits)