Query 047616
Match_columns 144
No_of_seqs 22 out of 24
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 12:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11169 DUF2956: Protein of u 83.6 0.78 1.7E-05 34.8 1.9 15 125-139 88-102 (103)
2 PF01569 PAP2: PAP2 superfamil 70.4 28 0.00061 23.0 7.0 100 36-142 26-127 (129)
3 PF03189 Otopetrin: Otopetrin; 66.0 17 0.00036 32.0 5.6 75 61-139 243-329 (441)
4 PF14037 YoqO: YoqO-like prote 58.3 8.2 0.00018 29.7 2.2 25 113-141 23-47 (117)
5 cd03381 PAP2_glucose_6_phospha 53.0 86 0.0019 25.7 7.3 74 54-134 67-149 (235)
6 PF08636 Pkr1: ER protein Pkr1 48.9 16 0.00035 26.0 2.3 28 46-75 16-43 (75)
7 PF06609 TRI12: Fungal trichot 46.0 1.7E+02 0.0038 27.2 8.9 53 52-107 234-295 (599)
8 cd03384 PAP2_wunen PAP2, wunen 44.5 1.3E+02 0.0027 22.2 7.0 78 51-135 64-149 (150)
9 KOG4474 Uncharacterized conser 35.6 88 0.0019 26.8 5.1 37 7-46 49-85 (253)
10 PF10177 DUF2371: Uncharacteri 32.3 11 0.00025 29.4 -0.7 19 61-79 107-125 (141)
11 PRK13735 conjugal transfer mat 31.2 78 0.0017 31.3 4.5 72 28-109 1-74 (942)
12 PF06298 PsbY: Photosystem II 30.4 51 0.0011 21.0 2.2 15 121-135 8-22 (36)
13 PF04547 Anoctamin: Calcium-ac 30.3 1.2E+02 0.0026 25.7 5.0 44 68-118 28-79 (452)
14 KOG1519 Predicted mitochondria 28.9 32 0.00069 30.0 1.4 55 33-89 190-252 (297)
15 PF14975 DUF4512: Domain of un 28.0 51 0.0011 24.3 2.2 34 91-124 4-38 (88)
16 PF00342 PGI: Phosphoglucose i 27.0 20 0.00042 32.1 -0.2 32 17-55 424-455 (486)
17 PRK05784 phosphoribosylamine-- 26.8 35 0.00076 30.3 1.3 8 136-143 460-467 (486)
18 KOG2887 Membrane protein invol 26.8 88 0.0019 25.7 3.5 41 62-102 55-95 (175)
19 PF00211 Guanylate_cyc: Adenyl 26.2 30 0.00065 24.5 0.7 43 17-61 105-151 (184)
20 cd00194 UBA Ubiquitin Associat 25.4 59 0.0013 18.4 1.7 23 111-133 15-37 (38)
21 CHL00196 psbY photosystem II p 23.9 79 0.0017 20.3 2.2 15 121-135 8-22 (36)
22 TIGR01291 nodJ ABC-2 type tran 22.9 1.5E+02 0.0033 23.0 4.1 40 102-141 7-46 (253)
23 PRK13240 pbsY photosystem II p 22.9 84 0.0018 20.4 2.2 15 121-135 8-22 (40)
24 PF07695 7TMR-DISM_7TM: 7TM di 22.5 2.8E+02 0.006 19.4 8.5 32 63-95 72-103 (205)
25 smart00044 CYCc Adenylyl- / gu 22.3 50 0.0011 23.8 1.2 27 29-55 151-177 (194)
26 PF03661 UPF0121: Uncharacteri 22.3 4.3E+02 0.0092 21.4 7.4 70 61-133 29-105 (247)
27 PRK03868 glucose-6-phosphate i 22.0 32 0.0007 30.0 0.2 33 17-56 365-397 (410)
28 PF13127 DUF3955: Protein of u 21.6 1E+02 0.0022 20.8 2.6 21 62-82 43-63 (63)
29 cd05016 SIS_PGI_2 Phosphogluco 21.6 31 0.00068 26.6 0.1 33 17-56 123-155 (164)
30 PF09919 DUF2149: Uncharacteri 21.4 84 0.0018 22.7 2.2 18 63-80 10-27 (92)
31 PRK14097 pgi glucose-6-phospha 21.4 32 0.0007 30.4 0.1 34 17-57 390-423 (448)
32 cd03205 GST_C_6 GST_C family, 20.8 79 0.0017 20.6 1.8 37 105-143 48-88 (98)
33 PF13903 Claudin_2: PMP-22/EMP 20.0 1.2E+02 0.0025 21.0 2.6 58 63-120 78-140 (172)
No 1
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=83.62 E-value=0.78 Score=34.85 Aligned_cols=15 Identities=33% Similarity=0.760 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhhhc
Q 047616 125 IVLALSWVFLLVYSW 139 (144)
Q Consensus 125 i~lalSWvffLvysw 139 (144)
++|++||+.|.+|-+
T Consensus 88 ~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 88 GLLVLSWIGFIAYIF 102 (103)
T ss_pred HHHHHHHHHHHHHHH
Confidence 389999999999964
No 2
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=70.36 E-value=28 Score=22.99 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=56.9
Q ss_pred cchHHHhhhcCCCccchhhhhhccch-hhHHHHHHHHHHHHHHHhccchhhh-hhhhhhhhhHHHHHHHHHHHhhhhhhh
Q 047616 36 HGIEVATKLQGSTPHDQLLIQISESF-SGLLLFAIGCLLFMVAFVKDQKFQS-FFAKGCVLLHISVAVWRVYIEINLDDL 113 (144)
Q Consensus 36 HG~e~A~KL~GSTPhDqlLIqtSdSF-sGlLLF~IGfllfMVafVkdrefqs-Ffakgc~~Lhv~ma~WR~~ferk~edL 113 (144)
-.++......+..|+.....+...|| ||=-..+..+..++..+.+.+...+ ...-.+..+=..+++=|+| +
T Consensus 26 ~rP~~~~~~~~~~~~~~~~~~~~~sfPSgH~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~srv~-------~ 98 (129)
T PF01569_consen 26 PRPFFYIPNYGLYPQHWPFQSPFNSFPSGHAAIAAAFAFFLAYYLGSRGWIRILLFLLAIVLAFLVALSRVY-------L 98 (129)
T ss_dssp --HHHHHHHHHCHHTCHHCHTTS-SSS-HHHHHHHHHHHHHHHHCCCCHHHSEEHHHHHHHHHHHHHHHHHH-------T
T ss_pred CCcCcccccCcccccCccccCCCCcCcchhhhhHHHHHhhhhhhhhccccccchhhHHHHHHHHHhhcCEEE-------c
Confidence 35555555555544444333334455 7777777777777777776655442 1111233334455555665 4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhcccc
Q 047616 114 AHDCLRQVVGDIVLALSWVFLLVYSWREK 142 (144)
Q Consensus 114 A~dwprq~vGDi~lalSWvffLvyswrek 142 (144)
.+.|+.|+++=++++..+........++|
T Consensus 99 g~H~~~Dvi~G~~lg~~~~~~~~~~~~~~ 127 (129)
T PF01569_consen 99 GAHFFSDVIAGILLGILIAYLFYRVYKKR 127 (129)
T ss_dssp TSS-HHHHHHHHHHHHHHHHHHCCHCHHH
T ss_pred CeEehHHHHHHHHHHHHHHHHHHHHhccc
Confidence 57899999998999888887766555543
No 3
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=65.95 E-value=17 Score=32.00 Aligned_cols=75 Identities=19% Similarity=0.386 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHHHHHHHh--ccchhhh-----hhhhhhh-----hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 047616 61 FSGLLLFAIGCLLFMVAFV--KDQKFQS-----FFAKGCV-----LLHISVAVWRVYIEINLDDLAHDCLRQVVGDIVLA 128 (144)
Q Consensus 61 FsGlLLF~IGfllfMVafV--kdrefqs-----Ffakgc~-----~Lhv~ma~WR~~ferk~edLA~dwprq~vGDi~la 128 (144)
|.|++++.+|++.+++.+| +|++++. +..-.++ ++=+..|+|| -|+++- ....|...+.|++|-
T Consensus 243 f~Gil~lv~tii~lilf~v~~~~~~~~~~A~~~~~i~~~~l~~l~~~a~i~g~~~---~r~l~~-~~~~~~~~LD~iLL~ 318 (441)
T PF03189_consen 243 FLGILVLVATIIVLILFFVLINDPEYSELAILLVYIFELVLYSLSILAVIIGIYR---MRKLKF-SSKNPGRSLDVILLV 318 (441)
T ss_pred HHHHHHHHHHHHHhehhhheecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhccc-cccCccccHhHHHHH
Confidence 6778888888888887765 4555422 1222222 2223445665 344433 446888999999999
Q ss_pred HHHHHhhhhhc
Q 047616 129 LSWVFLLVYSW 139 (144)
Q Consensus 129 lSWvffLvysw 139 (144)
.+=.-..+|+|
T Consensus 319 va~~G~~ly~~ 329 (441)
T PF03189_consen 319 VAAFGEFLYSY 329 (441)
T ss_pred HHHHHHHHHHH
Confidence 99888888876
No 4
>PF14037 YoqO: YoqO-like protein
Probab=58.25 E-value=8.2 Score=29.72 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=21.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhccc
Q 047616 113 LAHDCLRQVVGDIVLALSWVFLLVYSWRE 141 (144)
Q Consensus 113 LA~dwprq~vGDi~lalSWvffLvyswre 141 (144)
++-||..+ |+-+.+-||-++|.|.|
T Consensus 23 ~~~e~i~~----I~~~~~fVFillY~wd~ 47 (117)
T PF14037_consen 23 SKSEWISH----IACVGGFVFILLYNWDE 47 (117)
T ss_pred cchhhHHH----HHHHHHHHHHHhhhhHH
Confidence 56688876 89999999999999987
No 5
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=53.01 E-value=86 Score=25.74 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=46.6
Q ss_pred hhhhccch-hhHHHHHHHHHHHHHHH----hccc----hhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 047616 54 LIQISESF-SGLLLFAIGCLLFMVAF----VKDQ----KFQSFFAKGCVLLHISVAVWRVYIEINLDDLAHDCLRQVVGD 124 (144)
Q Consensus 54 LIqtSdSF-sGlLLF~IGfllfMVaf----Vkdr----efqsFfakgc~~Lhv~ma~WR~~ferk~edLA~dwprq~vGD 124 (144)
--.|+.|| ||=..-+.++..+|+.. .+.| ..+....-.+..+=+.+++=|+| |+..||-|++|=
T Consensus 67 ~c~tgysfPSGHam~a~a~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~V~~SRvY-------LgvHfpsDVlaG 139 (235)
T cd03381 67 TCETGPGSPSGHAMGTTAVLLVMVTALLSHLAGRKRSRFLRVMLWLVFWGVQLAVCLSRIY-------LAAHFPHQVIAG 139 (235)
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCHHHHHHH
Confidence 44566666 67666665555555433 2322 12222334445555667778888 688999999999
Q ss_pred HHHHHHHHHh
Q 047616 125 IVLALSWVFL 134 (144)
Q Consensus 125 i~lalSWvff 134 (144)
+++++.|...
T Consensus 140 ~~lGi~~~~~ 149 (235)
T cd03381 140 VISGIAVAET 149 (235)
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 6
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=48.86 E-value=16 Score=26.04 Aligned_cols=28 Identities=36% Similarity=0.668 Sum_probs=22.3
Q ss_pred CCCccchhhhhhccchhhHHHHHHHHHHHH
Q 047616 46 GSTPHDQLLIQISESFSGLLLFAIGCLLFM 75 (144)
Q Consensus 46 GSTPhDqlLIqtSdSFsGlLLF~IGfllfM 75 (144)
|+|| ++++-|.-||.+|++.-++.+..+
T Consensus 16 G~tp--~li~a~n~sF~~L~~~l~~Ll~~t 43 (75)
T PF08636_consen 16 GTTP--TLIIATNVSFAALFLVLLALLFLT 43 (75)
T ss_pred CCCh--HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555 899999999999998877766544
No 7
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=45.95 E-value=1.7e+02 Score=27.16 Aligned_cols=53 Identities=25% Similarity=0.476 Sum_probs=37.9
Q ss_pred hhhhhhccchhhHHHHHHHHHHHHHHHhc---------cchhhhhhhhhhhhhHHHHHHHHHHHh
Q 047616 52 QLLIQISESFSGLLLFAIGCLLFMVAFVK---------DQKFQSFFAKGCVLLHISVAVWRVYIE 107 (144)
Q Consensus 52 qlLIqtSdSFsGlLLF~IGfllfMVafVk---------drefqsFfakgc~~Lhv~ma~WR~~fe 107 (144)
|.+.+ =.+-|++||+.|+.+|++.+-= +..--.-+--|+++| +.-++|-.|+.
T Consensus 234 ~~l~~--lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~L-v~F~~wE~~~~ 295 (599)
T PF06609_consen 234 EQLKE--LDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLL-VAFVVWEWFGA 295 (599)
T ss_pred HHHHH--hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHH-HHHHHhhhhcc
Confidence 44554 3589999999999999998862 233334567788877 45588887765
No 8
>cd03384 PAP2_wunen PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the survival of PGCs and is essential in the migration process of these cells towards the somatic gonadal precursors.
Probab=44.55 E-value=1.3e+02 Score=22.24 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=43.4
Q ss_pred chhhhhhccch-hhHHHHHHHHHHHH----HHHhccch---hhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 047616 51 DQLLIQISESF-SGLLLFAIGCLLFM----VAFVKDQK---FQSFFAKGCVLLHISVAVWRVYIEINLDDLAHDCLRQVV 122 (144)
Q Consensus 51 DqlLIqtSdSF-sGlLLF~IGfllfM----VafVkdre---fqsFfakgc~~Lhv~ma~WR~~ferk~edLA~dwprq~v 122 (144)
+..+-+...|| ||=--++.-...|+ ..-.|.+. +.....-.++++=+.+++=|+| +.+.||.+++
T Consensus 64 ~~~~~~~~~SFPSGHs~~a~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~~a~~v~~sRv~-------~~~H~~sDvi 136 (150)
T cd03384 64 PDLIREARLSFPSGHASLSMYAAVFLALYLQARLKLRGSRLLRPLLQFLLLALALYVGLSRIS-------DYKHHWSDVL 136 (150)
T ss_pred HHHHhcCccCCCcHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhHhhhc-------cCCCCHHHHH
Confidence 33445566777 66655554333333 23333321 1112222334444445555655 3568999999
Q ss_pred HHHHHHHHHHHhh
Q 047616 123 GDIVLALSWVFLL 135 (144)
Q Consensus 123 GDi~lalSWvffL 135 (144)
+=.+++..|.+++
T Consensus 137 aG~~lG~~~~~~~ 149 (150)
T cd03384 137 AGALLGSVIALFL 149 (150)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 9
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.61 E-value=88 Score=26.83 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhchhhhhhhhceeeeccchHHHhhhcC
Q 047616 7 FLICILHSIIALTCGALMMFYTKEIYVFGHGIEVATKLQG 46 (144)
Q Consensus 7 ~~iCiLHS~iAlT~G~LMmFy~kei~vfgHG~e~A~KL~G 46 (144)
...|.+||+|+-+...+-+.+..| .++-+.+..++.+
T Consensus 49 ~~VSl~HS~Isg~~a~~~l~~~~~---~~~~~~~~~s~~~ 85 (253)
T KOG4474|consen 49 LTVSLLHSTISGLWALLSLLYDPE---MVDDPITYHSLSA 85 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcc---cccCHHHHHhhhh
Confidence 367999999999999999998884 4666666666554
No 10
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=32.34 E-value=11 Score=29.45 Aligned_cols=19 Identities=32% Similarity=0.679 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 047616 61 FSGLLLFAIGCLLFMVAFV 79 (144)
Q Consensus 61 FsGlLLF~IGfllfMVafV 79 (144)
.-|=++..||..+|+.|.+
T Consensus 107 ~~GPliMGIGiFifIcAna 125 (141)
T PF10177_consen 107 YFGPLIMGIGIFIFICANA 125 (141)
T ss_pred eecceEEecchhHHhHhHH
Confidence 3477889999999987754
No 11
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=31.23 E-value=78 Score=31.34 Aligned_cols=72 Identities=13% Similarity=0.226 Sum_probs=46.6
Q ss_pred hhceeeeccchHHHhhhcCCCccchhhhhhccchhhHHHH--HHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHHHHHH
Q 047616 28 TKEIYVFGHGIEVATKLQGSTPHDQLLIQISESFSGLLLF--AIGCLLFMVAFVKDQKFQSFFAKGCVLLHISVAVWRVY 105 (144)
Q Consensus 28 ~kei~vfgHG~e~A~KL~GSTPhDqlLIqtSdSFsGlLLF--~IGfllfMVafVkdrefqsFfakgc~~Lhv~ma~WR~~ 105 (144)
|-|||++|=|-=...-|-+- -.|=.|++|.+|+=+ .||++..++.|+|.|+...| .|-+ -+++.++ +.
T Consensus 1 m~eIYt~ggGe~l~~VfNAV-----A~~~gs~~f~sl~~Ialligvi~~~~~~i~~~n~~~~-~kW~---~~~~li~-~L 70 (942)
T PRK13735 1 MNEVYVIAGGEWLRNNLNAI-----AAFMGTRTWDSIEKIALTLSVLAVAVMWVQRHNVMDL-LGWV---AVFVLIS-LL 70 (942)
T ss_pred CeEEEEeccHHHHHHHHHHH-----HHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcCCHHHH-HHHH---HHHHHHH-Hh
Confidence 45899999774333332221 123456789888644 47888888999999998876 3333 2556666 77
Q ss_pred Hhhh
Q 047616 106 IEIN 109 (144)
Q Consensus 106 ferk 109 (144)
+--|
T Consensus 71 ~~Pk 74 (942)
T PRK13735 71 VNVR 74 (942)
T ss_pred cccc
Confidence 6655
No 12
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=30.44 E-value=51 Score=21.04 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhh
Q 047616 121 VVGDIVLALSWVFLL 135 (144)
Q Consensus 121 ~vGDi~lalSWvffL 135 (144)
++.-+++|.+|+.|=
T Consensus 8 Vl~Pil~A~gWa~fN 22 (36)
T PF06298_consen 8 VLLPILPAAGWALFN 22 (36)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456688999999874
No 13
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=30.28 E-value=1.2e+02 Score=25.72 Aligned_cols=44 Identities=25% Similarity=0.481 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHh----ccchhhhhhhhhhhhhHHHHHHHHHHH----hhhhhhhhhhhh
Q 047616 68 AIGCLLFMVAFV----KDQKFQSFFAKGCVLLHISVAVWRVYI----EINLDDLAHDCL 118 (144)
Q Consensus 68 ~IGfllfMVafV----kdrefqsFfakgc~~Lhv~ma~WR~~f----erk~edLA~dwp 118 (144)
.+|++.+..... -|.++..+|| ++|++|-..| .||=..||..|-
T Consensus 28 i~G~~~~~~~~~~~~~~~~~~~~~fa-------i~~~~W~~~fle~Wkr~~~~l~~~Wg 79 (452)
T PF04547_consen 28 IFGLIVFLYGLSFSYLFDNPFTPFFA-------IFMSLWATLFLEFWKRKEAELAYRWG 79 (452)
T ss_pred HHHHHHHHHHHhcccccccchhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666665555 3444444444 6788888765 466667777764
No 14
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only]
Probab=28.86 E-value=32 Score=30.03 Aligned_cols=55 Identities=33% Similarity=0.503 Sum_probs=44.3
Q ss_pred eeccchHHHhhhcCCCccchhhhhhccchh-hHHHHHHHHHHHHHHHhccc-------hhhhhhh
Q 047616 33 VFGHGIEVATKLQGSTPHDQLLIQISESFS-GLLLFAIGCLLFMVAFVKDQ-------KFQSFFA 89 (144)
Q Consensus 33 vfgHG~e~A~KL~GSTPhDqlLIqtSdSFs-GlLLF~IGfllfMVafVkdr-------efqsFfa 89 (144)
.||-|..++..|--.|.|.|-||. |=-+ |||=-.+||+.|=...||.| |||||+.
T Consensus 190 f~~l~~P~k~~LPtatt~~ahLv~--DFiAG~LLGA~l~~~FFPi~VvKt~MQsqiG~efqS~~K 252 (297)
T KOG1519|consen 190 FFGLRGPIKEHLPTATTHSAHLVN--DFIAGGLLGAMLGFLFFPINVVKTRMQSQIGGEFQSFPK 252 (297)
T ss_pred hhhccccccccCCchhhHHHHHHH--HHhhhhHHHHHHHHhhccHHHHHHHHHHHhCccccchHH
Confidence 478888888888888889998874 4334 45667799999999999986 8999985
No 15
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=27.97 E-value=51 Score=24.25 Aligned_cols=34 Identities=6% Similarity=0.319 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhh-HHHHHH
Q 047616 91 GCVLLHISVAVWRVYIEINLDDLAHDCL-RQVVGD 124 (144)
Q Consensus 91 gc~~Lhv~ma~WR~~ferk~edLA~dwp-rq~vGD 124 (144)
-|+++=+++.+|+.|.|.-+--+--.|| |.++++
T Consensus 4 PCivIPvLLwIykkFlqP~i~~~~spw~~k~~~~~ 38 (88)
T PF14975_consen 4 PCIVIPVLLWIYKKFLQPYIYPFWSPWPKKKAVQE 38 (88)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCccchhhhhcc
Confidence 3899999999999999988877766698 656554
No 16
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=27.02 E-value=20 Score=32.09 Aligned_cols=32 Identities=38% Similarity=0.618 Sum_probs=22.0
Q ss_pred HHhhchhhhhhhhceeeeccchHHHhhhcCCCccchhhh
Q 047616 17 ALTCGALMMFYTKEIYVFGHGIEVATKLQGSTPHDQLLI 55 (144)
Q Consensus 17 AlT~G~LMmFy~kei~vfgHG~e~A~KL~GSTPhDqlLI 55 (144)
+-|.|+||+||..++.+-| .|.|-.|-||-=+
T Consensus 424 ~~~lG~Lia~yE~~~~v~g-------~l~~INpFDQpGV 455 (486)
T PF00342_consen 424 PYSLGALIAFYEHKTFVQG-------YLWGINPFDQPGV 455 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHTS-TT--GGG
T ss_pred chHHHHHHHHHHHHHHHhh-------hhcCcCCCCCccH
Confidence 4588999999999888765 5666677776433
No 17
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=26.79 E-value=35 Score=30.27 Aligned_cols=8 Identities=75% Similarity=1.464 Sum_probs=6.8
Q ss_pred hhhccccc
Q 047616 136 VYSWREKY 143 (144)
Q Consensus 136 vyswreky 143 (144)
||.||||-
T Consensus 460 ~~~~~~~~ 467 (486)
T PRK05784 460 VYKWREKR 467 (486)
T ss_pred HHHHHHhc
Confidence 89999983
No 18
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.76 E-value=88 Score=25.67 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHHH
Q 047616 62 SGLLLFAIGCLLFMVAFVKDQKFQSFFAKGCVLLHISVAVW 102 (144)
Q Consensus 62 sGlLLF~IGfllfMVafVkdrefqsFfakgc~~Lhv~ma~W 102 (144)
+|++.+.++..+|-|--++-|.|--+|--||.+.=.+-|.=
T Consensus 55 ~gv~c~~l~~~lf~v~~~~~~kFal~~TlGnll~i~sf~fL 95 (175)
T KOG2887|consen 55 GGVLCFLLAMVLFPVLVVSPRKFALLYTLGNLLAIGSFAFL 95 (175)
T ss_pred HHHHHHHHHHHHHHhcccccceeehhHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999998876665543
No 19
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=26.17 E-value=30 Score=24.49 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=31.4
Q ss_pred HHhhchhhhh----hhhceeeeccchHHHhhhcCCCccchhhhhhccch
Q 047616 17 ALTCGALMMF----YTKEIYVFGHGIEVATKLQGSTPHDQLLIQISESF 61 (144)
Q Consensus 17 AlT~G~LMmF----y~kei~vfgHG~e~A~KL~GSTPhDqlLIqtSdSF 61 (144)
++++|-.+.- ...+..++|...+.|.+|...+|.++.+| |++.
T Consensus 105 GI~~G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a~~~~i~v--s~~v 151 (184)
T PF00211_consen 105 GIHTGPVVVGVVGSRRPEYDVFGDAVNIAARLESLAPPGQILV--SEEV 151 (184)
T ss_dssp EEEEEEEEEEEEESSSEEEEEESHHHHHHHHHHHTSSTTSEEE--EHHH
T ss_pred cccccccccccccCcccceeeeehhhhhhHHHHHhhccccccc--CHHH
Confidence 3455544332 34567999999999999999999998777 5543
No 20
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=25.42 E-value=59 Score=18.41 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH
Q 047616 111 DDLAHDCLRQVVGDIVLALSWVF 133 (144)
Q Consensus 111 edLA~dwprq~vGDi~lalSWvf 133 (144)
++.+....+..-||+--|+.|+|
T Consensus 15 ~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 15 REEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHh
Confidence 56788888999999999999986
No 21
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=23.94 E-value=79 Score=20.25 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhh
Q 047616 121 VVGDIVLALSWVFLL 135 (144)
Q Consensus 121 ~vGDi~lalSWvffL 135 (144)
++.-+++|.||+.|=
T Consensus 8 Vl~Pil~A~~Wa~fN 22 (36)
T CHL00196 8 IAAPVLAAASWALFN 22 (36)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456789999999874
No 22
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=22.94 E-value=1.5e+02 Score=23.00 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=33.6
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhccc
Q 047616 102 WRVYIEINLDDLAHDCLRQVVGDIVLALSWVFLLVYSWRE 141 (144)
Q Consensus 102 WR~~ferk~edLA~dwprq~vGDi~lalSWvffLvyswre 141 (144)
|.-..+|.+..+-++||..++.-++.-+-|++.+.+.+.+
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~ 46 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGK 46 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5556699999999999999999999999998887776543
No 23
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=22.86 E-value=84 Score=20.36 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhh
Q 047616 121 VVGDIVLALSWVFLL 135 (144)
Q Consensus 121 ~vGDi~lalSWvffL 135 (144)
++.=|++|.||+.|=
T Consensus 8 Vl~Pil~A~~Wa~fN 22 (40)
T PRK13240 8 VLAPILAAAGWAVFN 22 (40)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456789999999874
No 24
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=22.52 E-value=2.8e+02 Score=19.36 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHhccchhhhhhhhhhhhh
Q 047616 63 GLLLFAIGCLLFMVAFVKDQKFQSFFAKGCVLL 95 (144)
Q Consensus 63 GlLLF~IGfllfMVafVkdrefqsFfakgc~~L 95 (144)
+..+..+.+.+|+..+.|.++ +.-..+....+
T Consensus 72 ~~~~~~~~~~~F~~~~l~~~~-~~~~~~~~~~~ 103 (205)
T PF07695_consen 72 FLMLSFIFFLLFVRSFLELKR-HPRLRRLLLIL 103 (205)
T ss_pred HHHHHHHHHHHHHHHHhCccc-CchHHHHHHHH
Confidence 444555566669999999977 54444443333
No 25
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=22.32 E-value=50 Score=23.82 Aligned_cols=27 Identities=19% Similarity=0.487 Sum_probs=24.0
Q ss_pred hceeeeccchHHHhhhcCCCccchhhh
Q 047616 29 KEIYVFGHGIEVATKLQGSTPHDQLLI 55 (144)
Q Consensus 29 kei~vfgHG~e~A~KL~GSTPhDqlLI 55 (144)
.+..++|-..++|.+|...++.+|+++
T Consensus 151 ~~~~~~G~~vn~AarL~~~a~~g~i~v 177 (194)
T smart00044 151 PRYCLFGDTVNLASRMESVGDPGQILV 177 (194)
T ss_pred ceeEEeChHHHHHHHHHhcCCCCeEEE
Confidence 367899999999999999999998765
No 26
>PF03661 UPF0121: Uncharacterised protein family (UPF0121); InterPro: IPR005344 Uncharacterised integral membrane protein family.; GO: 0016021 integral to membrane
Probab=22.31 E-value=4.3e+02 Score=21.43 Aligned_cols=70 Identities=20% Similarity=0.332 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHHHHHHHhhhhhh--hhhhhhHHHHHH-----HHHHHHHHH
Q 047616 61 FSGLLLFAIGCLLFMVAFVKDQKFQSFFAKGCVLLHISVAVWRVYIEINLDD--LAHDCLRQVVGD-----IVLALSWVF 133 (144)
Q Consensus 61 FsGlLLF~IGfllfMVafVkdrefqsFfakgc~~Lhv~ma~WR~~ferk~ed--LA~dwprq~vGD-----i~lalSWvf 133 (144)
|.|=++--+..++++..+.+-+...+.|.+- +....+.+-+..-+|++. +..+|.+++..| +++|+.|.+
T Consensus 29 f~~~~~~l~~~~~y~l~~~~~~~~~~~Y~~a---ll~~a~t~~i~l~q~~~~~~~~~~~l~~ll~ddn~~YL~~al~fl~ 105 (247)
T PF03661_consen 29 FLGHVFTLLCSLLYILPILFFSLAYSAYRKA---LLGAAATYAIVLYQRLPRFQFSRAYLQRLLLDDNFQYLLYALIFLF 105 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHH---HHHHHHHHHHHHHHhcccccccHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6777777778888888887665544444332 111112222122234443 467888888886 678888875
No 27
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=21.95 E-value=32 Score=30.02 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=25.3
Q ss_pred HHhhchhhhhhhhceeeeccchHHHhhhcCCCccchhhhh
Q 047616 17 ALTCGALMMFYTKEIYVFGHGIEVATKLQGSTPHDQLLIQ 56 (144)
Q Consensus 17 AlT~G~LMmFy~kei~vfgHG~e~A~KL~GSTPhDqlLIq 56 (144)
+-|.|.||+||...+.+.| .|.|--|-||-=++
T Consensus 365 ~~~lG~L~~~yE~~t~~~g-------~l~~INpFDQpGVE 397 (410)
T PRK03868 365 EFSIGYLIYYYELLTSAVG-------KMLGINTYDQPGVE 397 (410)
T ss_pred HHHHHHHHHHHHHHHHHHh-------hhcCcCCCCCccHH
Confidence 5688999999987776654 78888888885433
No 28
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=21.65 E-value=1e+02 Score=20.84 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHhccc
Q 047616 62 SGLLLFAIGCLLFMVAFVKDQ 82 (144)
Q Consensus 62 sGlLLF~IGfllfMVafVkdr 82 (144)
-|.+++.+|.+.+.+.++|.|
T Consensus 43 lg~l~~~~g~~~~i~~~~~~~ 63 (63)
T PF13127_consen 43 LGYLFLLIGIISLIIYLIKKR 63 (63)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 578889999999998888765
No 29
>cd05016 SIS_PGI_2 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=21.58 E-value=31 Score=26.60 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=24.8
Q ss_pred HHhhchhhhhhhhceeeeccchHHHhhhcCCCccchhhhh
Q 047616 17 ALTCGALMMFYTKEIYVFGHGIEVATKLQGSTPHDQLLIQ 56 (144)
Q Consensus 17 AlT~G~LMmFy~kei~vfgHG~e~A~KL~GSTPhDqlLIq 56 (144)
+-+.|+||++|...+.+ +-.+.|-.|-||-=++
T Consensus 123 ~~~lG~L~~~yE~~t~~-------~G~l~gINpFDQpgVE 155 (164)
T cd05016 123 PYTLGALLALYEHKTAV-------QGALLGINPFDQPGVE 155 (164)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHhcCcCCCCChhHH
Confidence 45789999999876655 4578899999985443
No 30
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=21.40 E-value=84 Score=22.71 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 047616 63 GLLLFAIGCLLFMVAFVK 80 (144)
Q Consensus 63 GlLLF~IGfllfMVafVk 80 (144)
=.|.||.|||+++++.-.
T Consensus 10 v~LVfav~llvalv~~~n 27 (92)
T PF09919_consen 10 VMLVFAVGLLVALVMSWN 27 (92)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 357899999999886543
No 31
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=21.39 E-value=32 Score=30.42 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=25.4
Q ss_pred HHhhchhhhhhhhceeeeccchHHHhhhcCCCccchhhhhh
Q 047616 17 ALTCGALMMFYTKEIYVFGHGIEVATKLQGSTPHDQLLIQI 57 (144)
Q Consensus 17 AlT~G~LMmFy~kei~vfgHG~e~A~KL~GSTPhDqlLIqt 57 (144)
+-|.|.||+||...+.+-| .|.|--|-||-=++-
T Consensus 390 ~~~lG~L~~~yE~~t~~~G-------~l~gINpFDQpGVE~ 423 (448)
T PRK14097 390 EYTFGYLVYFFEKACAISG-------YLLGVNPFDQPGVEA 423 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH-------hhcCcCCCCCccHHH
Confidence 4688999999987776655 677777777755543
No 32
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=20.84 E-value=79 Score=20.57 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=22.8
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHH--HHHHhh--hhhccccc
Q 047616 105 YIEINLDDLAHDCLRQVVGDIVLAL--SWVFLL--VYSWREKY 143 (144)
Q Consensus 105 ~ferk~edLA~dwprq~vGDi~lal--SWvffL--vyswreky 143 (144)
+.|+.+.+- .|.+-.+.||.++. .|+... -..|+++|
T Consensus 48 ~le~~L~~~--~~d~~TlADi~l~~~l~~~~~~~~~~~~~~~~ 88 (98)
T cd03205 48 ALEAELAKL--PLDPLDLADIAVACALGYLDFRHPDLDWRAAH 88 (98)
T ss_pred HHHHhhhhC--CCCCCCHHHHHHHHHHHHHHhHccCcchhhhC
Confidence 367777653 34777899999874 456432 23456655
No 33
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=20.02 E-value=1.2e+02 Score=20.98 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHhccchhhhhhhhhhh-----hhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 047616 63 GLLLFAIGCLLFMVAFVKDQKFQSFFAKGCV-----LLHISVAVWRVYIEINLDDLAHDCLRQ 120 (144)
Q Consensus 63 GlLLF~IGfllfMVafVkdrefqsFfakgc~-----~Lhv~ma~WR~~ferk~edLA~dwprq 120 (144)
|+++-.+|+++.+.++.|.+..--.++..+. ..=+.+.+....+++..++-..+|+.+
T Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 140 (172)
T PF13903_consen 78 GLLLLLFAFVFALIGFCKRSYTLYLFAGILFILAGLCILIALIVFVVSVNYEIEINFPQWPPD 140 (172)
T ss_pred HHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 5666777888888888887763222222111 112233445566666666655666543
Done!