Query 047616
Match_columns 144
No_of_seqs 22 out of 24
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 23:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bww_A Protein of unknown func 44.3 5.5 0.00019 33.2 0.4 32 29-60 201-245 (307)
2 3mr7_A Adenylate/guanylate cyc 23.1 4.6 0.00016 28.3 -3.0 33 30-64 109-141 (189)
3 1nkz_B Light-harvesting protei 22.5 42 0.0014 20.9 1.7 23 82-104 9-38 (41)
4 2l34_A TYRO protein tyrosine k 22.3 66 0.0023 18.8 2.4 20 121-141 13-32 (33)
5 1lgh_B LH II, B800/850, light 18.5 56 0.0019 20.6 1.7 22 82-103 14-42 (45)
6 1skh_A Major prion protein 2; 16.7 61 0.0021 19.3 1.4 14 90-103 6-19 (30)
7 2wy4_A Single domain haemoglob 16.1 1.2E+02 0.0041 19.8 2.9 43 48-90 2-44 (140)
8 3c2g_A SYS-1 protein; beta-cat 16.1 55 0.0019 29.8 1.6 15 119-133 492-506 (619)
9 1erp_A Pheromone ER-10; NMR {E 16.1 36 0.0012 21.3 0.3 12 20-31 25-36 (38)
10 2vhb_A Hemoglobin; heme, respi 16.0 95 0.0032 20.6 2.5 42 48-91 3-46 (146)
No 1
>3bww_A Protein of unknown function DUF692/COG3220; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.20A {Haemophilus somnus}
Probab=44.31 E-value=5.5 Score=33.15 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=6.1
Q ss_pred hceeeeccchHH------------HhhhcCCCccc-hhhhhhccc
Q 047616 29 KEIYVFGHGIEV------------ATKLQGSTPHD-QLLIQISES 60 (144)
Q Consensus 29 kei~vfgHG~e~------------A~KL~GSTPhD-qlLIqtSdS 60 (144)
.||.+=||..|. -+|.+|-+||+ +++|+|-+.
T Consensus 201 ~eiHlAGh~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lliDTH~~ 245 (307)
T 3bww_A 201 NYIHIAGHDDEHAATEVQIQTSESFNKIKGDLRHLPPLLVDTHGE 245 (307)
T ss_dssp EEEEECC--------------------------------------
T ss_pred EEEeccCCccccccccccccccccccccccccccCCCeeEECCCC
Confidence 689999997554 37999999999 699999654
No 2
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=23.12 E-value=4.6 Score=28.33 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=27.0
Q ss_pred ceeeeccchHHHhhhcCCCccchhhhhhccchhhH
Q 047616 30 EIYVFGHGIEVATKLQGSTPHDQLLIQISESFSGL 64 (144)
Q Consensus 30 ei~vfgHG~e~A~KL~GSTPhDqlLIqtSdSFsGl 64 (144)
+-.++|....+|.+|+..++..| |..|++.--+
T Consensus 109 ~~~~~G~~Vn~AaRl~~~a~~~~--I~vs~~~~~~ 141 (189)
T 3mr7_A 109 DGDIFGDAVNVAARLEAISEPGA--ICVSDIVHQI 141 (189)
T ss_dssp SSCEESHHHHHHHHHHHHSCTTC--EEEEHHHHHH
T ss_pred CCeEEChHHHHHHHHHhhCCCCe--EEECHHHHHh
Confidence 66899999999999999999888 5567765443
No 3
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=22.53 E-value=42 Score=20.86 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=14.9
Q ss_pred chhhhhhhhh-------hhhhHHHHHHHHH
Q 047616 82 QKFQSFFAKG-------CVLLHISVAVWRV 104 (144)
Q Consensus 82 refqsFfakg-------c~~Lhv~ma~WR~ 104 (144)
+||++.|-+| +++-|+++-.||=
T Consensus 9 ~EfH~~~~~~~~~F~~iA~vAH~l~w~wrP 38 (41)
T 1nkz_B 9 EELHKYVIDGTRVFLGLALVAHFLAFSATP 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555555555 4567888888874
No 4
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=22.30 E-value=66 Score=18.81 Aligned_cols=20 Identities=45% Similarity=0.679 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhhhhccc
Q 047616 121 VVGDIVLALSWVFLLVYSWRE 141 (144)
Q Consensus 121 ~vGDi~lalSWvffLvyswre 141 (144)
++||++..+ =+-.+||-|++
T Consensus 13 Vvgdi~~t~-~i~~~vy~~~r 32 (33)
T 2l34_A 13 VVGDLVLTV-LIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHH-HHHHHHHHHCC
T ss_pred eHHHHHHHH-HHHHHHhheec
Confidence 678887554 56677888875
No 5
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=18.49 E-value=56 Score=20.65 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=13.7
Q ss_pred chhhhhhhhh-------hhhhHHHHHHHH
Q 047616 82 QKFQSFFAKG-------CVLLHISVAVWR 103 (144)
Q Consensus 82 refqsFfakg-------c~~Lhv~ma~WR 103 (144)
+||++.|-+| +++-|++.-.||
T Consensus 14 ~EfH~~~~~~~~~F~~iA~vAH~L~~~wr 42 (45)
T 1lgh_B 14 IAVHDQFKTTFSAFIILAAVAHVLVWVWK 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555544 456688877776
No 6
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=16.69 E-value=61 Score=19.31 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=12.3
Q ss_pred hhhhhhHHHHHHHH
Q 047616 90 KGCVLLHISVAVWR 103 (144)
Q Consensus 90 kgc~~Lhv~ma~WR 103 (144)
-||.+|-.++|.|.
T Consensus 6 ~~cwilvLfva~ws 19 (30)
T 1skh_A 6 IGSWILVLFVAMWS 19 (30)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 58999999999994
No 7
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=16.15 E-value=1.2e+02 Score=19.84 Aligned_cols=43 Identities=9% Similarity=0.038 Sum_probs=28.1
Q ss_pred CccchhhhhhccchhhHHHHHHHHHHHHHHHhccchhhhhhhh
Q 047616 48 TPHDQLLIQISESFSGLLLFAIGCLLFMVAFVKDQKFQSFFAK 90 (144)
Q Consensus 48 TPhDqlLIqtSdSFsGlLLF~IGfllfMVafVkdrefqsFfak 90 (144)
||.|.-+|+.|=.--.--.=.+|-..|---|.++++.+.+|.+
T Consensus 2 t~~~~~~v~~sw~~v~~~~~~~~~~fy~rlf~~~P~~~~~F~~ 44 (140)
T 2wy4_A 2 TKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM 44 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGSCH
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHChHHHHhcCc
Confidence 4555556654432221134567877787788899999999973
No 8
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=16.13 E-value=55 Score=29.81 Aligned_cols=15 Identities=47% Similarity=0.999 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHH
Q 047616 119 RQVVGDIVLALSWVF 133 (144)
Q Consensus 119 rq~vGDi~lalSWvf 133 (144)
|..||-|+.|+||++
T Consensus 492 ~NLvGHIciA~sWa~ 506 (619)
T 3c2g_A 492 ENLIGHICAAYSWVF 506 (619)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhh
Confidence 578999999999997
No 9
>1erp_A Pheromone ER-10; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=16.12 E-value=36 Score=21.28 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=10.2
Q ss_pred hchhhhhhhhce
Q 047616 20 CGALMMFYTKEI 31 (144)
Q Consensus 20 ~G~LMmFy~kei 31 (144)
-|++||.|++|.
T Consensus 25 ~gc~~~v~~~el 36 (38)
T 1erp_A 25 PGCLGMVWNPEL 36 (38)
T ss_dssp HHHHHHHTSTTT
T ss_pred CCeEEEEecccc
Confidence 389999999885
No 10
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=16.02 E-value=95 Score=20.65 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=26.4
Q ss_pred CccchhhhhhccchhhH--HHHHHHHHHHHHHHhccchhhhhhhhh
Q 047616 48 TPHDQLLIQISESFSGL--LLFAIGCLLFMVAFVKDQKFQSFFAKG 91 (144)
Q Consensus 48 TPhDqlLIqtSdSFsGl--LLF~IGfllfMVafVkdrefqsFfakg 91 (144)
||.|.-+|+.| +.-+ -.=.+|--.|---|..++|.+.+|.++
T Consensus 3 t~~~~~~v~~s--w~~v~~~~~~~~~~fy~rlf~~~P~~~~~F~~~ 46 (146)
T 2vhb_A 3 DQQTINIIKAT--VPVLKEHGVTITTTFYKNLFAKHPEVRPLFDMG 46 (146)
T ss_dssp CHHHHHHHHHH--HHHHHHTHHHHHHHHHHHHHHHCGGGGGGC---
T ss_pred CHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHChHHHHhcCcc
Confidence 45555566543 2222 245678777877888999999999863
Done!