BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047617
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/339 (38%), Positives = 193/339 (56%), Gaps = 10/339 (2%)
Query: 7 NVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKA 66
+++W LGF + YI G K+ G LT ++ SS L+YGQ EGLKA
Sbjct: 8 DLDWKNLGFEYHKLPFRYISYYKDG-KWDDGKLTEDATLHISESSPALHYGQEAFEGLKA 66
Query: 67 YRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKG-T 125
YRT++ + LFRP NA R+Q A+R+ M ++F++A KQ+V +N +VPP G G T
Sbjct: 67 YRTKDGSVQLFRPNMNAERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGAT 126
Query: 126 MYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKGAL---NLVVEEKFRRATPGGTGG 182
+Y+RPLL+G G +GV PA EY F +A PVGNY KG L N ++++ + RA P GTG
Sbjct: 127 LYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGA 186
Query: 183 VKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIF-VVKENVISTPPTNG 241
K NYA P A + F+DV++LD T +EE ++N F + K+N T P +
Sbjct: 187 AKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFIT-PLSP 245
Query: 242 TILPGITRKSIIEIA-RVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKR 300
+ILP +T+ S++ +A G + E + V+EL E GTA V++P+ + + D
Sbjct: 246 SILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDF 305
Query: 301 TEY--KRGVGTVGQKLYEILTGIQSGCIEDEMGWTVELD 337
+ + VG V KLY+ LTGIQ G ++ GW ++D
Sbjct: 306 HVFYSETEVGPVTHKLYDELTGIQFGDVKAPEGWIYKVD 344
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 220 bits (561), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 189/339 (55%), Gaps = 10/339 (2%)
Query: 6 ANVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLK 65
A+++W LGF TD Y+ + G+ + GTLT + + S L+YGQ EGLK
Sbjct: 22 ADIDWSTLGFSYIRTDLRYLAHWKDGE-WDAGTLTEDNQIHLAEGSTALHYGQQCFEGLK 80
Query: 66 AYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGK-G 124
AYR + I LFRP++NA RM+M R+ M + EQF++A Q+V +N ++PP G G
Sbjct: 81 AYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGG 140
Query: 125 TMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKGAL---NLVVEEKFRRATPGGTG 181
++Y+RP ++G G ++GV A E+ F + PVG Y KG L N + + + RA P GTG
Sbjct: 141 SLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTNFITSD-YDRAAPHGTG 199
Query: 182 GVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVIS-TPPTN 240
K NYA P EAK + F DV++LD T +EEA +N F + ++ P +
Sbjct: 200 AAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTPQS 259
Query: 241 GTILPGITRKSIIEIA-RVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDK 299
+ILP IT+ S++ +A LG +VEE I ++EL E GTA V+ P+ I + D
Sbjct: 260 PSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGDD 319
Query: 300 RTEY--KRGVGTVGQKLYEILTGIQSGCIEDEMGWTVEL 336
+ + G V ++LY+ L GIQ G E GW V++
Sbjct: 320 FHVFYSESEPGPVTRRLYDELVGIQYGDKEAPEGWIVKV 358
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 191/339 (56%), Gaps = 15/339 (4%)
Query: 14 GFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNER 73
GFG TD+M ++ + + + + +G +++PS+ +L+YGQ + EGLKAYR +
Sbjct: 35 GFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGS 94
Query: 74 ILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPP-GKGTMYIRPLL 132
I+ FRPE NA R+Q A R+ + E F+ +++Q++ + +WVPP G+ ++Y+RP +
Sbjct: 95 IVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFV 154
Query: 133 MGNGPDLGVAPASEYTFVTYASPVGNYHKGALNLV---VEEKFRRATPGGTGGVKAITNY 189
+ P LGV P++EY ++ ASP G Y KG + V + ++ RA+PGGTG K NY
Sbjct: 155 IATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNY 214
Query: 190 AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV----KENVISTPPTNGTILP 245
A ++A G V++LDA+ +YVEE N+F V + TP +G++LP
Sbjct: 215 AASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLP 274
Query: 246 GITRKSIIEIARVLGYQVEERAILVEELF------DAEEVFCTGTAVVVNPVNSITYQDK 299
GITR S++++A G+ VEER I V+E + EVF GTA V+ PV+ + + D
Sbjct: 275 GITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDG 334
Query: 300 RTEYKRGV-GTVGQKLYEILTGIQSGCIEDEMGWTVELD 337
G G + L + LTGIQ G D GW L+
Sbjct: 335 EFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 373
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 217 bits (553), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 191/339 (56%), Gaps = 15/339 (4%)
Query: 14 GFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNER 73
GFG TD+M ++ + + + + +G +++PS+ +L+YGQ + EGLKAYR +
Sbjct: 34 GFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGS 93
Query: 74 ILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPP-GKGTMYIRPLL 132
I+ FRPE NA R+Q A R+ + E F+ +++Q++ + +WVPP G+ ++Y+RP +
Sbjct: 94 IVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFV 153
Query: 133 MGNGPDLGVAPASEYTFVTYASPVGNYHKGALNLV---VEEKFRRATPGGTGGVKAITNY 189
+ P LGV P++EY ++ ASP G Y KG + V + ++ RA+PGGTG K NY
Sbjct: 154 IATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNY 213
Query: 190 AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV----KENVISTPPTNGTILP 245
A ++A G V++LDA+ +YVEE N+F V + TP +G++LP
Sbjct: 214 AASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLP 273
Query: 246 GITRKSIIEIARVLGYQVEERAILVEELF------DAEEVFCTGTAVVVNPVNSITYQDK 299
GITR S++++A G+ VEER I V+E + EVF GTA V+ PV+ + + D
Sbjct: 274 GITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDG 333
Query: 300 RTEYKRGV-GTVGQKLYEILTGIQSGCIEDEMGWTVELD 337
G G + L + LTGIQ G D GW L+
Sbjct: 334 EFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 184/338 (54%), Gaps = 15/338 (4%)
Query: 14 GFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNER 73
GFG TD+M ++ ++G+ + + +G E++PS+ +L+Y Q + EGLKAYR +
Sbjct: 30 GFGKYHTDHMVSIDYAEGRGWHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWADGS 89
Query: 74 ILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVP-PPGKGTMYIRPLL 132
I+ FR + NA R++ A R+ + F+ +++Q++ ++ WVP G+ +Y+RP +
Sbjct: 90 IVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFI 149
Query: 133 MGNGPDLGVAPASEYTFVTYASPVGNYHKGAL---NLVVEEKFRRATPGGTGGVKAITNY 189
P LGV PA++Y ++ ASP G Y KG + ++ V ++ RA PGGTG K NY
Sbjct: 150 FATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGAAKFGGNY 209
Query: 190 AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV----KENVISTPPTNGTILP 245
A +EA G V++LDAV +Y+EE NIF V + TP +G++LP
Sbjct: 210 AASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPELSGSLLP 269
Query: 246 GITRKSIIEIARVLGYQVEERAILVEELF------DAEEVFCTGTAVVVNPVNSITYQDK 299
GITR S++++A G+ VEER I ++E + EVF GTA V+ PV + +
Sbjct: 270 GITRDSLLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVARVRHGAS 329
Query: 300 RTEYKRGV-GTVGQKLYEILTGIQSGCIEDEMGWTVEL 336
G G V L + LTGIQ G D GW L
Sbjct: 330 EFRIADGQPGEVTMALRDTLTGIQRGTFADTHGWMARL 367
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 164/303 (54%), Gaps = 18/303 (5%)
Query: 13 LGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNE 72
L FG T TD+M ++ + + + Q + F ++P+S L+Y L EG+KA++ +++
Sbjct: 28 LVFGKTFTDHMLMVEWND-KGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQ 86
Query: 73 RILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLL 132
++ LFRP N RM A R+C+ S + + +++++ ++ WVP ++Y+RP+L
Sbjct: 87 QVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVL 146
Query: 133 MGNGPDLGVAPASEYTFVTYASPVGNYHKGA----LNLVVEEKFRRATPGGTGGVKAITN 188
+GN P LGV+ PVG Y G ++L+ + F RA GG G K N
Sbjct: 147 IGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN 206
Query: 189 YAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV---KENVIS--TPPTNGTI 243
Y EA +G VL+L + + E T NIFV ++ V+ TPP NG I
Sbjct: 207 YGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 244 LPGITRKSIIEIARVLG-YQVEERAILVEELFDA------EEVFCTGTAVVVNPVNSITY 296
LPG+ R+S++++A+ G ++V ER I +++L A EVF +GTA V PV+ I Y
Sbjct: 266 LPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVAPVHRILY 325
Query: 297 QDK 299
+D+
Sbjct: 326 KDR 328
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 164/303 (54%), Gaps = 18/303 (5%)
Query: 13 LGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNE 72
L FG T TD+M ++ + + + Q + F ++P+S L+Y L EG+KA++ +++
Sbjct: 28 LVFGKTFTDHMLMVEWND-KGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQ 86
Query: 73 RILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLL 132
++ LFRP N RM A R+C+ S + + +++++ ++ WVP ++Y+RP+L
Sbjct: 87 QVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVL 146
Query: 133 MGNGPDLGVAPASEYTFVTYASPVGNYHKGA----LNLVVEEKFRRATPGGTGGVKAITN 188
+GN P LGV+ PVG Y G ++L+ + F RA GG G K N
Sbjct: 147 IGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN 206
Query: 189 YAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV---KENVIS--TPPTNGTI 243
Y EA +G VL+L + + E T NIFV ++ V+ TPP NG I
Sbjct: 207 YGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 244 LPGITRKSIIEIARVLG-YQVEERAILVEELFDA------EEVFCTGTAVVVNPVNSITY 296
LPG+ R+S++++A+ G ++V ER I +++L A EVF +GTA V PV+ I Y
Sbjct: 266 LPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVAPVHRILY 325
Query: 297 QDK 299
+D+
Sbjct: 326 KDR 328
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 164/303 (54%), Gaps = 18/303 (5%)
Query: 13 LGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNE 72
L FG T TD+M ++ + + + Q + F ++P+S L+Y L EG+KA++ +++
Sbjct: 28 LVFGKTFTDHMLMVEWND-KGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQ 86
Query: 73 RILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLL 132
++ LFRP N RM A R+C+ S + + +++++ ++ WVP ++Y+RP+L
Sbjct: 87 QVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVL 146
Query: 133 MGNGPDLGVAPASEYTFVTYASPVGNYHKGA----LNLVVEEKFRRATPGGTGGVKAITN 188
+GN P LGV+ PVG Y G ++L+ + F RA GG G K N
Sbjct: 147 IGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN 206
Query: 189 YAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV---KENVIS--TPPTNGTI 243
Y EA +G VL+L + + E T NIFV ++ V+ TPP NG I
Sbjct: 207 YGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 244 LPGITRKSIIEIARVLG-YQVEERAILVEELFDA------EEVFCTGTAVVVNPVNSITY 296
LPG+ R+S++++A+ G ++V ER I +++L A EVF +GTA V PV+ I Y
Sbjct: 266 LPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILY 325
Query: 297 QDK 299
+D+
Sbjct: 326 KDR 328
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 164/303 (54%), Gaps = 18/303 (5%)
Query: 13 LGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNE 72
L FG T TD+M ++ + + + Q + F ++P+S L+Y L EG+KA++ +++
Sbjct: 28 LVFGKTFTDHMLMVEWND-KGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQ 86
Query: 73 RILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLL 132
++ LFRP N RM A R+C+ S + + +++++ ++ WVP ++Y+RP+L
Sbjct: 87 QVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVL 146
Query: 133 MGNGPDLGVAPASEYTFVTYASPVGNYHKGA----LNLVVEEKFRRATPGGTGGVKAITN 188
+GN P LGV+ PVG Y G ++L+ + F RA GG G K N
Sbjct: 147 IGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN 206
Query: 189 YAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV---KENVIS--TPPTNGTI 243
Y EA +G VL+L + + E T NIFV ++ V+ TPP NG I
Sbjct: 207 YGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 244 LPGITRKSIIEIARVLG-YQVEERAILVEELFDA------EEVFCTGTAVVVNPVNSITY 296
LPG+ R+S++++A+ G ++V ER I +++L A EVF +GTA V PV+ I Y
Sbjct: 266 LPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVCPVHRILY 325
Query: 297 QDK 299
+D+
Sbjct: 326 KDR 328
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 163/303 (53%), Gaps = 18/303 (5%)
Query: 13 LGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNE 72
L FG T TD+M ++ + + + Q + F ++P+S L+Y L EG+KA++ +++
Sbjct: 28 LVFGKTFTDHMLMVEWND-KGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQ 86
Query: 73 RILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLL 132
++ LFRP N RM A R+ + S + + +++++ ++ WVP ++Y+RP+L
Sbjct: 87 QVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVL 146
Query: 133 MGNGPDLGVAPASEYTFVTYASPVGNYHKGA----LNLVVEEKFRRATPGGTGGVKAITN 188
+GN P LGV+ PVG Y G ++L+ + F RA GG G K N
Sbjct: 147 IGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN 206
Query: 189 YAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV---KENVIS--TPPTNGTI 243
Y EA +G VL+L + + E T NIFV ++ V+ TPP NG I
Sbjct: 207 YGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 244 LPGITRKSIIEIARVLG-YQVEERAILVEELFDA------EEVFCTGTAVVVNPVNSITY 296
LPG+ R+S++++A+ G ++V ER I +++L A EVF +GTA V PV+ I Y
Sbjct: 266 LPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILY 325
Query: 297 QDK 299
+D+
Sbjct: 326 KDR 328
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 162/303 (53%), Gaps = 18/303 (5%)
Query: 13 LGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNE 72
L FG T TD+M ++ + + + Q + F ++P+S L+Y L EG+KA++ +++
Sbjct: 28 LVFGKTFTDHMLMVEWND-KGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQ 86
Query: 73 RILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLL 132
++ LFRP N RM A R+ + S + + +++++ ++ WVP ++ +RP+L
Sbjct: 87 QVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLXVRPVL 146
Query: 133 MGNGPDLGVAPASEYTFVTYASPVGNYHKGA----LNLVVEEKFRRATPGGTGGVKAITN 188
+GN P LGV+ PVG Y G ++L+ + F RA GG G K N
Sbjct: 147 IGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGN 206
Query: 189 YAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV---KENVIS--TPPTNGTI 243
Y EA +G VL+L + + E T NIFV ++ V+ TPP NG I
Sbjct: 207 YGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 244 LPGITRKSIIEIARVLG-YQVEERAILVEELFDA------EEVFCTGTAVVVNPVNSITY 296
LPG+ R+S++++A+ G ++V ER I +++L A EVF +GTA V PV+ I Y
Sbjct: 266 LPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILY 325
Query: 297 QDK 299
+D+
Sbjct: 326 KDR 328
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 165/344 (47%), Gaps = 21/344 (6%)
Query: 11 DGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTR 70
+ L FG TD+M + S + + + ++P S L+Y L EGLKA+R
Sbjct: 45 NNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGV 104
Query: 71 NERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRP 130
+ +I LF+P N RM A R + E+ + ++Q+V ++ WVP ++YIRP
Sbjct: 105 DNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRP 164
Query: 131 LLMGNGPDLGVAPASEYTFVTYASPVGNY-HKGALN---LVVEEKFRRATPGGTGGVKAI 186
+G P LGV ++ SPVG Y G N L K+ RA GGTG K
Sbjct: 165 TFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMG 224
Query: 187 TNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV-----KENVISTPPTNG 241
NY EA G VL+L + + E T N+F+ E ++TPP +G
Sbjct: 225 GNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ-ITEVGTMNLFLYWINEDGEEELATPPLDG 283
Query: 242 TILPGITRKSIIEIARVLG-YQVEERAILVEELFDA------EEVFCTGTAVVVNPVNSI 294
ILPG+TR+ I+++A G ++V ER + +++L A E+F +GTA VV PV+ I
Sbjct: 284 IILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDI 343
Query: 295 TYQDKRTEYK--RGVGTVGQKLYEILTGIQSGCIEDEMGWTVEL 336
Y+ + + ++ LT IQ G +E WT+ L
Sbjct: 344 LYKGETIHIPTMENGPKLASRILSKLTDIQYG--REERDWTIVL 385
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/344 (30%), Positives = 164/344 (47%), Gaps = 21/344 (6%)
Query: 11 DGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTR 70
+ L FG TD+M + S + + + ++P S L+Y L EGLKA+R
Sbjct: 25 NNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGV 84
Query: 71 NERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRP 130
+ +I LF+P N RM A R + E+ + ++Q+V ++ WVP ++YIRP
Sbjct: 85 DNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRP 144
Query: 131 LLMGNGPDLGVAPASEYTFVTYASPVGNYHKGA----LNLVVEEKFRRATPGGTGGVKAI 186
+G P LGV ++ SPVG Y ++L K+ RA GGTG K
Sbjct: 145 AFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMG 204
Query: 187 TNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVK-----ENVISTPPTNG 241
NY E G VL+L + + E T N+F+ E ++TPP +G
Sbjct: 205 GNYGSSLFAQCEDVDNGCQQVLWLYGRDHQ-ITEVGTMNLFLYWINEDGEEELATPPLDG 263
Query: 242 TILPGITRKSIIEIARVLG-YQVEERAILVEELFDA------EEVFCTGTAVVVNPVNSI 294
ILPG+TR+ I+++A G ++V ER + +++L A E+F +GTA VV PV+ I
Sbjct: 264 IILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFSSGTACVVCPVSDI 323
Query: 295 TYQDKRTEYK--RGVGTVGQKLYEILTGIQSGCIEDEMGWTVEL 336
Y+ + + ++ LT IQ G +E WT+ L
Sbjct: 324 LYKGETIHIPTMENGPKLASRILSKLTDIQYG--REESDWTIVL 365
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 158/311 (50%), Gaps = 25/311 (8%)
Query: 37 GTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAE--RMC 94
G + R+ +++ S L+YG + EG++ Y + ++ FR E+ R+ A+ R
Sbjct: 12 GEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRFP 70
Query: 95 MSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYT--FVTY 152
+S +I++ + A + ++ N + YIRPL+ +GV P + Y+ +
Sbjct: 71 VSQ-SIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIA 122
Query: 153 ASPVGNYHKGALNL-----VVEEKFRRATPGGT-GGVKAITNYAIIYKPISEAKAKGFTD 206
A P G Y GA L + + RA P KA NY SEA+ G+ +
Sbjct: 123 AFPWGAY-LGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQE 181
Query: 207 VLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEER 266
+ LD V G Y+ E + N+F VK+ V+ TPP + LPGITR +II++A+ LG +V E+
Sbjct: 182 GIALD-VNG-YISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQ 239
Query: 267 AILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGCI 326
+ E L+ A+EVF +GTA + PV S+ D + G V +++ + G+ +G
Sbjct: 240 VLSRESLYLADEVFMSGTAAEITPVRSV---DGIQVGEGRCGPVTKRIQQAFFGLFTGET 296
Query: 327 EDEMGWTVELD 337
ED+ GW +++
Sbjct: 297 EDKWGWLDQVN 307
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 158/311 (50%), Gaps = 25/311 (8%)
Query: 37 GTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAE--RMC 94
G + R+ +++ S L+YG + EG++ Y + ++ FR E+ R+ A+ R
Sbjct: 13 GEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRFP 71
Query: 95 MSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYT--FVTY 152
+S +I++ + A + ++ N + YIRPL+ +GV P + Y+ +
Sbjct: 72 VSQ-SIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIA 123
Query: 153 ASPVGNYHKGALNL-----VVEEKFRRATPGGT-GGVKAITNYAIIYKPISEAKAKGFTD 206
A P G Y GA L + + RA P KA NY SEA+ G+ +
Sbjct: 124 AFPWGAY-LGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQE 182
Query: 207 VLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEER 266
+ LD V G Y+ E + N+F VK+ V+ TPP + LPGITR +II++A+ LG +V E+
Sbjct: 183 GIALD-VNG-YISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQ 240
Query: 267 AILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGCI 326
+ E L+ A+EVF +GTA + PV S+ D + G V +++ + G+ +G
Sbjct: 241 VLSRESLYLADEVFMSGTAAEITPVRSV---DGIQVGEGRCGPVTKRIQQAFFGLFTGET 297
Query: 327 EDEMGWTVELD 337
ED+ GW +++
Sbjct: 298 EDKWGWLDQVN 308
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 143/319 (44%), Gaps = 22/319 (6%)
Query: 26 MNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMR 85
M G+ + G L + +++ + L+YG G+ EG++AY+T + +FR +E+ R
Sbjct: 24 MADRDGKIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKR 83
Query: 86 MQMGAERMCMSSPTIEQFVNAVKQ-IVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPA 144
+ A+ M P ++ + A ++ +V N+ + Y+RP++ LGV+
Sbjct: 84 LLNSAKIFQMDVPFDQETLEAAQRDVVRENKL-------ESCYLRPIIWIGSEKLGVSAK 136
Query: 145 SEYTFVTYAS-PVGNY------HKGALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPIS 197
V A+ P G Y KG + + R KA Y
Sbjct: 137 GNTIHVAIAAWPWGAYLGEEGLAKG-IRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQ 195
Query: 198 EAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIAR 257
EA A G+ + L LD V G YV E S N F+V + TP + L GITR ++I +A+
Sbjct: 196 EATADGYDEALLLD-VDG-YVSEGSGENFFLVNRGKLYTPDL-ASCLDGITRDTVITLAK 252
Query: 258 VLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEI 317
G +V E+ I +E++ A+E F TGTA V P+ + D RT G + +KL
Sbjct: 253 EAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIREL---DNRTIGGGARGPITEKLQSA 309
Query: 318 LTGIQSGCIEDEMGWTVEL 336
+ +G W ++
Sbjct: 310 FFDVVNGKSAKHADWLTKI 328
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 138/316 (43%), Gaps = 24/316 (7%)
Query: 26 MNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMR 85
M G + G + + + S L+YG + EG++AY T + +FR +E+ R
Sbjct: 1 MQIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYET-AKGPAIFRLKEHVKR 59
Query: 86 MQMGAERMCMSSP-TIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPA 144
A+ + M P E+ A+K++V N G + YIRPL LGV P
Sbjct: 60 FYNSAKVLRMEIPFAPEELEEAIKEVVRRN-------GYRSCYIRPLAWMGAKALGVNPL 112
Query: 145 --SEYTFVTYASPVGNY------HKGALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPI 196
+ + A G Y KGA L+ R G K NY
Sbjct: 113 PNNPAEVMVAAWEWGAYLGEEAVRKGA-RLITSSWARFPANVMPGKAKVGGNYVNSALAK 171
Query: 197 SEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIA 256
EA A G + L LD YV E S N+F V++ VI + L GITR S+I IA
Sbjct: 172 MEAVAAGADEALLLD--EEGYVAEGSGENLFFVRDGVIYAL-EHSVNLEGITRDSVIRIA 228
Query: 257 RVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYE 316
+ LGY+V+ ++L+ A+EVF TGTA V PV+ I D R K G V +L E
Sbjct: 229 KDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMI---DWRPIGKGTAGPVALRLRE 285
Query: 317 ILTGIQSGCIEDEMGW 332
+ +G + GW
Sbjct: 286 VYLEAVTGRRPEYEGW 301
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 220 EASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEV 279
E S SN+F+VKE + TP + IL GITR+++I++A+ L VEER + V ELF+A+E
Sbjct: 176 EGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEX 235
Query: 280 FCTGTAVVVNPVNSI 294
F T T+ V PV +
Sbjct: 236 FLTHTSAGVVPVRRL 250
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 31/248 (12%)
Query: 56 YGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSN 114
+G G+ E +K Y +F E+ R+ AE++ ++ P T ++F + ++V N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 115 RRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYA------SPVGNYHKGALNLVV 168
G +Y + + G P P + V P+ N KG V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFV 134
Query: 169 EE-KFRRATPGGTGGVKAITNY-AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNI 226
E+ ++ R +K++ A++ K EA KG + + T V E S+SN+
Sbjct: 135 EDIRWLRC------DIKSLNLLGAVLAK--QEAHEKGCYEAILHRNNT---VTEGSSSNV 183
Query: 227 FVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAV 286
F +K+ ++ T P N IL GITR +I A + V+E E +E+F T T
Sbjct: 184 FGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 287 VVNPVNSI 294
+ PV I
Sbjct: 244 EITPVIEI 251
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 31/248 (12%)
Query: 56 YGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSN 114
+G G+ E +K Y +F E+ R+ AE++ ++ P T ++F + ++V N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 115 RRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYA------SPVGNYHKGALNLVV 168
G +Y + + G P P + V P+ N KG V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFV 134
Query: 169 EE-KFRRATPGGTGGVKAITNY-AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNI 226
E+ ++ R +K++ A++ K EA KG + + T V E S+SN+
Sbjct: 135 EDIRWLRC------DIKSLNLLGAVLAK--QEAHEKGCYEAILHRNNT---VTEGSSSNV 183
Query: 227 FVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAV 286
F +K+ ++ T P N IL GITR +I A + V+E E +E+F T T
Sbjct: 184 FGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 287 VVNPVNSI 294
+ PV I
Sbjct: 244 EITPVIEI 251
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 31/248 (12%)
Query: 56 YGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSN 114
+G G+ E +K Y +F E+ R+ AE++ ++ P T ++F + ++V N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 115 RRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYA------SPVGNYHKGALNLVV 168
G +Y + + G P P + V P+ N KG V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFV 134
Query: 169 EE-KFRRATPGGTGGVKAITNY-AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNI 226
E+ ++ R +K++ A++ K EA KG + + T V E S+SN+
Sbjct: 135 EDIRWLRC------DIKSLNLLGAVLAK--QEAHEKGCYEAILHRNNT---VTEGSSSNV 183
Query: 227 FVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAV 286
F +K+ ++ T P N IL GITR +I A + V+E E +E+F T T
Sbjct: 184 FGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 287 VVNPVNSI 294
+ PV I
Sbjct: 244 EITPVIEI 251
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 200 KAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVL 259
K+ GF DV+F D G V E +TS + K + I TP G ILPG T+ ++ A
Sbjct: 201 KSNGFDDVIFTD---GDRVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEK 257
Query: 260 GYQVEERAILVEELFDAEEVF 280
G++ +E+ + +++LF A+ V+
Sbjct: 258 GWRCKEKDLSIDDLFGADSVW 278
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 31/248 (12%)
Query: 56 YGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSN 114
+G G+ E +K Y +F E+ R+ AE++ ++ P T ++F + ++V N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 115 RRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYA------SPVGNYHKGALNLVV 168
G +Y + + G P P + V P+ N KG V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFV 134
Query: 169 EE-KFRRATPGGTGGVKAITNY-AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNI 226
E+ ++ R +K++ A++ K EA KG + + T V + S+SN+
Sbjct: 135 EDIRWLRC------DIKSLNLLGAVLAK--QEAHEKGCYEAILHRNNT---VTKGSSSNV 183
Query: 227 FVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAV 286
F +K+ ++ T P N IL GITR +I A + V+E E +E+F T T
Sbjct: 184 FGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 287 VVNPVNSI 294
+ PV I
Sbjct: 244 EITPVIEI 251
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 31/248 (12%)
Query: 56 YGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSN 114
+G G+ E +K Y +F E+ R+ AE++ ++ P T ++F + ++V N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 115 RRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYA------SPVGNYHKGALNLVV 168
G +Y + + G P P + V P+ N KG V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFV 134
Query: 169 EE-KFRRATPGGTGGVKAITNY-AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNI 226
E+ ++ R +K++ A++ K EA KG + + T V S+SN+
Sbjct: 135 EDIRWLRC------DIKSLNLLGAVLAK--QEAHEKGCYEAILHRNNT---VTSGSSSNV 183
Query: 227 FVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAV 286
F +K+ ++ T P N IL GITR +I A + V+E E +E+F T T
Sbjct: 184 FGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 287 VVNPVNSI 294
+ PV I
Sbjct: 244 EITPVIEI 251
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 31/248 (12%)
Query: 56 YGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSN 114
+G G+ E +K Y +F E+ R+ AE++ ++ P T ++F + ++V N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 115 RRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYA------SPVGNYHKGALNLVV 168
G +Y + + G P P + V P+ N KG V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFV 134
Query: 169 EE-KFRRATPGGTGGVKAITNY-AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNI 226
E+ ++ R +K++ A++ K EA KG + + T V E S+SN+
Sbjct: 135 EDIRWLRC------DIKSLNLLGAVLAK--QEAHEKGCYEAILHRNNT---VTEGSSSNV 183
Query: 227 FVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAV 286
F +K+ ++ T P N I GITR +I A + V+E E +E+F T T
Sbjct: 184 FGIKDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 287 VVNPVNSI 294
+ PV I
Sbjct: 244 EITPVIEI 251
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 198 EAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIAR 257
+A A G D LF + T +V E + +N+F+++ N++ TP ILPGITR +I +
Sbjct: 154 QAIAVGADDALFFN--TENHVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQ 211
Query: 258 VLGYQVEERAILVEELFDAEEVFCTGT 284
V+E ++ + + DA+ VF T +
Sbjct: 212 QHKXSVQEISLTKKRIEDADAVFLTNS 238
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
pdb|2Y4R|B Chain B, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
Length = 292
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 112/273 (41%), Gaps = 35/273 (12%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHS 113
L YG GL E L A R R+L E + R++ G R+ + T A++Q + +
Sbjct: 41 LAYGDGLFETL-AVRAGTPRLL----ERHLARLEEGCRRLAIPLDT-----AALRQELLA 90
Query: 114 NRRWVPPPGKGTMYIRPLLMGNGPDL-GVAPASEYTFVTYAS-------PVGNYHKGALN 165
+ G G + L++ G L G AP +E + S P ++ +G
Sbjct: 91 ---FCAALGDG---VAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPERHWQQGVRL 144
Query: 166 LVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSN 225
+ R A G+K + + +E G + L LD + V E SN
Sbjct: 145 FAC--RTRLAEQPLLAGLKHLNRLEQVLAR-AEWSDAGHAEGLMLD--VHERVVEGVFSN 199
Query: 226 IFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTA 285
+ +V + + P + G+ R ++E A +G + R + + EL A+EVF +
Sbjct: 200 LLLVLDGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQ 259
Query: 286 VVVNPVNSITYQDKRTEYKRGVGTVGQKLYEIL 318
+ PV ++ E+ VG + +KL + L
Sbjct: 260 FGIWPVRAL------DEHVWPVGELTRKLQDQL 286
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 206 DVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEE 265
+ L LD + +V E +N+F K NV+ TP + + GI R+ I + YQ+ E
Sbjct: 161 EALVLD--SEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVE 218
Query: 266 RAILVEELFDAEEVFCTGTAVVVNPV 291
+EE A+E+ + V PV
Sbjct: 219 VQASLEESLQADEMVICNALMPVMPV 244
>pdb|2WJZ|B Chain B, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|D Chain D, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|F Chain F, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
Length = 201
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 203 GFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQ 262
G+ +V+F D Y T +E+V+ T +G I P RK R+LG+Q
Sbjct: 122 GWNEVIFKDTFPNGYYAFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRK-----GRILGFQ 176
Query: 263 VEERA 267
A
Sbjct: 177 FHPEA 181
>pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
pdb|1KXJ|B Chain B, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
Length = 205
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 203 GFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQ 262
G+ +V+F D Y T +E+V+ T +G I P RK R+LG+Q
Sbjct: 124 GWNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRK-----GRILGFQ 178
>pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1K9V|F Chain F, Structural Evidence For Ammonia Tunelling Across The
(Beta- Alpha)8-Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
Length = 201
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 203 GFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQ 262
G+ +V+F D Y T +E+V+ T +G I P RK R+LG+Q
Sbjct: 122 GWNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRK-----GRILGFQ 176
>pdb|4DBL|E Chain E, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|J Chain J, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4FI3|F Chain F, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 255
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 61 IEGLKAYRTRN-ERILLFRPEE-------NAMRM-----QMGAERMCMSSPTIEQFVNAV 107
IE + ++ N ERI+ +P+ NA R +G + M + + +IEQ NA+
Sbjct: 40 IEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANAL 99
Query: 108 KQIVHSNRRWVPPPGKGTMYIRPLL 132
+Q+ W P P K + LL
Sbjct: 100 RQLAP----WSPQPDKAEQAAQSLL 120
>pdb|1N2Z|A Chain A, 2.0 Angstrom Structure Of Btuf, The Vitamin B12 Binding
Protein Of E. Coli
pdb|1N2Z|B Chain B, 2.0 Angstrom Structure Of Btuf, The Vitamin B12 Binding
Protein Of E. Coli
Length = 245
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 61 IEGLKAYRTRN-ERILLFRPEE-------NAMRM-----QMGAERMCMSSPTIEQFVNAV 107
IE + ++ N ERI+ +P+ NA R +G + M + + +IEQ NA+
Sbjct: 39 IEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANAL 98
Query: 108 KQIVHSNRRWVPPPGKGTMYIRPLL 132
+Q+ W P P K + LL
Sbjct: 99 RQLAP----WSPQPDKAEQAAQSLL 119
>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
pdb|2FGE|B Chain B, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
Length = 995
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 64/153 (41%), Gaps = 31/153 (20%)
Query: 196 ISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEI 255
ISE K+K +LF TG V S + V V TPP + T +P I + S++
Sbjct: 30 ISECKSKA---ILFKHKKTGCEVXSVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCG 86
Query: 256 ARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLY 315
+R Y V+E VE L + F +N+ TY D RT Y V + K +
Sbjct: 87 SR--KYPVKEP--FVELLKGSLHTF----------LNAFTYPD-RTCYP--VASTNTKDF 129
Query: 316 EILTGIQ------SGCIED-----EMGWTVELD 337
L + C++D + GW EL+
Sbjct: 130 YNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELN 162
>pdb|3D1N|I Chain I, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|J Chain J, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|K Chain K, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|L Chain L, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|M Chain M, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|N Chain N, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|O Chain O, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|P Chain P, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
Length = 151
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 2 VIEYA-NVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSG 52
+ E+A N L GLT T ++G +SQ ++RF K ++ P S
Sbjct: 6 IREFAKNFKIRRLSLGLTQTQVGQAXTATEGPAYSQSAISRFEKLDITPKSA 57
>pdb|1WLT|A Chain A, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
Homologue From Sulfolobus Tokodaii
pdb|1WLT|B Chain B, Crystal Structure Of Dtdp-4-Dehydrorhamnose 3,5-Epimerase
Homologue From Sulfolobus Tokodaii
Length = 196
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 1 MVIEYANVNWDGLGFGLT-----PTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILN 55
M E+ N+ G+G L P + + K + F++ + +T M+ S
Sbjct: 21 MPFEFENL---GMGIILIKPKVFPDKRGFFLEVFKSEDFTKMRIPNVIQTNMSFSR---- 73
Query: 56 YGQGLIEGLKAYRTRNER-ILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSN 114
+G++ GL RT E+ ++F P+ + + + + SSPT ++V A +
Sbjct: 74 --KGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRK---SSPTFGKYVKAELNEENHY 128
Query: 115 RRWVPP 120
W+PP
Sbjct: 129 MLWIPP 134
>pdb|2B9U|A Chain A, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|C Chain C, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|D Chain D, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|B Chain B, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|E Chain E, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|F Chain F, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|G Chain G, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|H Chain H, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|I Chain I, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|J Chain J, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|K Chain K, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
pdb|2B9U|L Chain L, Crystal Structure Of Dtdp-4-dehydrorhamnose 3,5-epimerase
From Sulfolobus Tokodaii
Length = 176
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 1 MVIEYANVNWDGLGFGLT-----PTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILN 55
M E+ N+ G+G L P + + K + F++ + +T M+ S
Sbjct: 1 MPFEFENL---GMGIILIKPKVFPDKRGFFLEVFKSEDFTKMRIPNVIQTNMSFSR---- 53
Query: 56 YGQGLIEGLKAYRTRNER-ILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSN 114
+G++ GL RT E+ ++F P+ + + + + SSPT ++V A +
Sbjct: 54 --KGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRK---SSPTFGKYVKAELNEENHY 108
Query: 115 RRWVPP 120
W+PP
Sbjct: 109 MLWIPP 114
>pdb|3M4N|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302a Mutant Complexed With Palao
Length = 359
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 241 GTILPGITRKSIIEIARVLGYQVE 264
GT++ G T + I E+ARVLG V+
Sbjct: 104 GTVMDGDTEEHIAEVARVLGRYVD 127
>pdb|3M5C|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302e Mutant Complexed With Palao
Length = 359
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 241 GTILPGITRKSIIEIARVLGYQVE 264
GT++ G T + I E+ARVLG V+
Sbjct: 104 GTVMDGDTEEHIAEVARVLGRYVD 127
>pdb|3KZC|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
pdb|3KZK|A Chain A, Crystal Structure Of Acetylornithine Transcarbamylase
Complexed With Acetylcitrulline
pdb|3KZM|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate
pdb|3KZN|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With N-Acetyl-L-Ornirthine
pdb|3KZO|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate And
N-Acetyl-L-Norvaline
pdb|3M4J|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Palao
Length = 359
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 241 GTILPGITRKSIIEIARVLGYQVE 264
GT++ G T + I E+ARVLG V+
Sbjct: 104 GTVMDGDTEEHIAEVARVLGRYVD 127
>pdb|3M5D|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302r Mutant Complexed With Palao
Length = 359
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 241 GTILPGITRKSIIEIARVLGYQVE 264
GT++ G T + I E+ARVLG V+
Sbjct: 104 GTVMDGDTEEHIAEVARVLGRYVD 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,646,926
Number of Sequences: 62578
Number of extensions: 458132
Number of successful extensions: 1137
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 44
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)