Query 047617
Match_columns 337
No_of_seqs 142 out of 1406
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 12:58:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02782 Branched-chain amino 100.0 4.7E-76 1E-80 569.7 40.9 335 3-337 65-403 (403)
2 PLN02259 branched-chain-amino- 100.0 7.3E-76 1.6E-80 565.8 39.3 335 3-337 51-388 (388)
3 PLN02883 Branched-chain amino 100.0 7.8E-75 1.7E-79 557.4 39.7 334 3-336 47-383 (384)
4 PLN03117 Branched-chain-amino- 100.0 1.8E-73 3.8E-78 546.3 40.7 334 3-336 15-350 (355)
5 PRK13357 branched-chain amino 100.0 2.1E-67 4.6E-72 505.0 38.9 329 7-337 16-356 (356)
6 KOG0975 Branched chain aminotr 100.0 9.9E-68 2.2E-72 489.2 28.5 331 2-335 39-379 (379)
7 TIGR01123 ilvE_II branched-cha 100.0 9.5E-63 2.1E-67 466.3 35.6 301 34-336 1-313 (313)
8 TIGR01122 ilvE_I branched-chai 100.0 9.7E-62 2.1E-66 456.5 34.1 289 34-336 1-298 (298)
9 PRK06606 branched-chain amino 100.0 2.7E-61 5.9E-66 455.0 34.4 292 31-336 7-306 (306)
10 PRK12479 branched-chain amino 100.0 1.3E-58 2.8E-63 435.3 33.2 275 32-325 5-287 (299)
11 PRK13356 aminotransferase; Pro 100.0 4.3E-58 9.4E-63 429.3 33.7 272 32-323 8-283 (286)
12 PRK07544 branched-chain amino 100.0 6.4E-58 1.4E-62 429.4 32.4 275 31-327 9-291 (292)
13 PRK08320 branched-chain amino 100.0 1.7E-57 3.8E-62 425.7 33.5 274 32-324 4-285 (288)
14 cd01557 BCAT_beta_family BCAT_ 100.0 2.2E-57 4.7E-62 423.1 33.6 274 46-324 1-279 (279)
15 PRK07650 4-amino-4-deoxychoris 100.0 2.5E-57 5.4E-62 423.6 32.9 272 33-324 2-277 (283)
16 PLN02845 Branched-chain-amino- 100.0 2.9E-56 6.2E-61 424.7 32.8 273 32-325 42-325 (336)
17 PRK06680 D-amino acid aminotra 100.0 4.3E-56 9.4E-61 415.8 33.1 271 31-324 3-283 (286)
18 PRK12400 D-amino acid aminotra 100.0 8.3E-56 1.8E-60 414.6 33.2 271 32-324 6-284 (290)
19 cd01558 D-AAT_like D-Alanine a 100.0 6.9E-56 1.5E-60 411.2 31.0 263 34-318 1-270 (270)
20 TIGR01121 D_amino_aminoT D-ami 100.0 1.4E-55 3E-60 410.5 32.7 266 33-321 2-274 (276)
21 PRK07849 4-amino-4-deoxychoris 100.0 5E-55 1.1E-59 409.5 32.4 266 31-321 7-287 (292)
22 COG0115 IlvE Branched-chain am 100.0 3E-54 6.5E-59 402.9 32.9 275 31-325 2-283 (284)
23 PRK06092 4-amino-4-deoxychoris 100.0 2.6E-54 5.7E-59 400.3 31.7 260 33-320 2-267 (268)
24 TIGR03461 pabC_Proteo aminodeo 100.0 5.5E-54 1.2E-58 396.7 30.9 254 34-315 1-260 (261)
25 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 1.4E-52 3E-57 385.9 31.4 249 51-318 1-256 (256)
26 cd01559 ADCL_like ADCL_like: 4 100.0 1.7E-52 3.6E-57 384.2 29.4 246 51-318 1-249 (249)
27 PRK09266 hypothetical protein; 100.0 2.6E-52 5.6E-57 386.6 29.2 257 31-320 3-260 (266)
28 PF01063 Aminotran_4: Aminotra 100.0 3.5E-42 7.6E-47 311.7 25.7 224 77-318 1-231 (231)
29 PRK07546 hypothetical protein; 100.0 1E-40 2.3E-45 298.4 25.0 204 58-294 4-209 (209)
30 PRK07101 hypothetical protein; 100.0 5.9E-32 1.3E-36 237.5 21.6 183 58-288 3-187 (187)
31 PF15507 DUF4649: Domain of un 66.5 7.9 0.00017 28.4 3.2 52 264-317 11-66 (72)
32 cd05569 PTS_IIB_fructose PTS_I 39.7 58 0.0013 25.0 4.4 36 251-286 20-64 (96)
33 PF13051 DUF3912: Protein of u 39.2 27 0.00058 24.3 2.1 40 221-260 29-68 (68)
34 COG1935 Uncharacterized conser 38.5 27 0.00059 28.0 2.3 44 242-286 4-52 (122)
35 TIGR00829 FRU PTS system, fruc 37.5 59 0.0013 24.5 4.0 32 254-285 22-62 (85)
36 PRK06683 hypothetical protein; 32.8 66 0.0014 24.1 3.6 29 248-277 41-69 (82)
37 PRK10474 putative PTS system f 32.8 75 0.0016 24.0 4.0 36 250-285 4-48 (88)
38 cd03057 GST_N_Beta GST_N famil 32.6 49 0.0011 23.6 2.9 64 251-318 13-76 (77)
39 PF03698 UPF0180: Uncharacteri 32.3 1.1E+02 0.0024 23.0 4.6 67 251-318 12-79 (80)
40 PF04322 DUF473: Protein of un 31.1 35 0.00076 27.6 1.9 59 243-301 5-76 (119)
41 PRK13602 putative ribosomal pr 31.1 72 0.0016 23.8 3.6 29 247-276 40-68 (82)
42 PRK03972 ribosomal biogenesis 29.8 3.9E+02 0.0084 23.9 8.4 91 197-293 43-168 (208)
43 cd03079 GST_N_Metaxin2 GST_N f 27.1 1.4E+02 0.003 21.9 4.4 68 233-314 2-71 (74)
44 COG2257 Uncharacterized homolo 24.7 54 0.0012 25.1 1.8 33 245-277 30-62 (92)
45 cd03045 GST_N_Delta_Epsilon GS 24.6 1.3E+02 0.0028 20.9 3.9 59 251-314 14-72 (74)
46 cd03059 GST_N_SspA GST_N famil 23.6 1.1E+02 0.0025 21.1 3.4 60 250-317 13-72 (73)
47 PF08222 HTH_CodY: CodY helix- 23.1 1.1E+02 0.0025 21.4 3.0 23 245-268 14-39 (61)
48 cd03041 GST_N_2GST_N GST_N fam 22.7 1.5E+02 0.0034 21.1 4.0 62 251-317 15-76 (77)
49 PRK13601 putative L7Ae-like ri 22.5 1.3E+02 0.0028 22.6 3.5 30 247-277 37-66 (82)
50 PRK10427 putative PTS system f 22.2 1.6E+02 0.0035 23.5 4.3 32 254-285 27-67 (114)
51 cd03054 GST_N_Metaxin GST_N fa 22.0 2.8E+02 0.0061 19.2 6.6 66 234-315 3-70 (72)
52 PRK01018 50S ribosomal protein 21.9 1.3E+02 0.0028 23.3 3.6 33 245-277 43-75 (99)
53 KOG3442 Uncharacterized conser 21.8 2.1E+02 0.0045 23.4 4.7 40 86-129 58-98 (132)
54 COG1445 FrwB Phosphotransferas 21.3 2.1E+02 0.0045 23.3 4.6 35 250-284 22-65 (122)
55 cd03080 GST_N_Metaxin_like GST 21.1 2.5E+02 0.0054 19.8 4.9 55 249-318 20-74 (75)
56 PTZ00106 60S ribosomal protein 21.0 1.3E+02 0.0029 23.8 3.5 32 245-276 52-83 (108)
57 KOG2708 Predicted metalloprote 20.5 51 0.0011 30.0 1.2 26 232-258 30-59 (336)
No 1
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=4.7e-76 Score=569.67 Aligned_cols=335 Identities=66% Similarity=1.149 Sum_probs=311.6
Q ss_pred cccCCCCCCCCCCCCccCCceEEEEeCCCCeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhH
Q 047617 3 IEYANVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEEN 82 (337)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~H 82 (337)
.+++++||++||||.++||||+.++|..+..|.||+++|.+++.|++.|++|+||||+|||||+|++.+|++++|++++|
T Consensus 65 ~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H 144 (403)
T PLN02782 65 TELADIDWDNLGFGLVPTDYMYIMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEEN 144 (403)
T ss_pred cccccCCccccCCCccccCceEEEEECCCCcEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHH
Confidence 34679999999999999999999999887889999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCCCCcEEEEEEeecCCccC-
Q 047617 83 AMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHK- 161 (337)
Q Consensus 83 l~RL~~Sa~~l~i~~~~~~~l~~~i~~ll~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~- 161 (337)
++||.+||++|+|+.++.++|.+++.+++++|+.|+|+.+.+.+|||++++|++..+|+.++.++++++++.|.++++.
T Consensus 145 ~~RL~~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~~~~ 224 (403)
T PLN02782 145 AIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 224 (403)
T ss_pred HHHHHHHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCCCcEEEEEEEECcccccc
Confidence 9999999999999988899999999999999999999877779999999988776788877777889999999876653
Q ss_pred --CceEEEEEeeceecCCCCCCCCccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCC
Q 047617 162 --GALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPT 239 (337)
Q Consensus 162 --~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l 239 (337)
+++++.++++++|..|.+++++|+++||+.+++++++|+++|+||+||+|..++|+|+|++++|||++++++|+||++
T Consensus 225 g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l 304 (403)
T PLN02782 225 GVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAI 304 (403)
T ss_pred CCccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEcCCC
Confidence 478888876688999989999999889999999999999999999999995337999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEee-CCCccHHHHHHHHHH
Q 047617 240 NGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEY-KRGVGTVGQKLYEIL 318 (337)
Q Consensus 240 ~~giL~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~-~~~~g~~~~~L~~~~ 318 (337)
+.+||+||||+.||++|+++|++|+|+.|+++||.+|||+|+|||+.+|+||.+|+++|+.+.+ ++++||++++|++.|
T Consensus 305 ~~~iLpGITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~g~~~~~~~g~~Gpvt~~L~~~l 384 (403)
T PLN02782 305 KGTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVL 384 (403)
T ss_pred cCCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEccCcceEEEEEEEEECCEEEeCCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888988754 457899999999999
Q ss_pred HhhHccCCCCCCCCeEECC
Q 047617 319 TGIQSGCIEDEMGWTVELD 337 (337)
Q Consensus 319 ~~~~~~~~~~~~~w~~~~~ 337 (337)
.++|.|+.+|.++|++.|+
T Consensus 385 ~~iq~G~~~~~~~W~~~v~ 403 (403)
T PLN02782 385 TSLQMGLIEDNMNWTVELS 403 (403)
T ss_pred HHHhcCCCCCCCCCeEECC
Confidence 9999999999999999985
No 2
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=7.3e-76 Score=565.80 Aligned_cols=335 Identities=63% Similarity=1.089 Sum_probs=309.5
Q ss_pred cccCCCCCCCCCCCCccCCceEEEEeCCCCeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhH
Q 047617 3 IEYANVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEEN 82 (337)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~H 82 (337)
.+++++||++||||.++||||+.++|..+..|.||+++|.+++.|++.|++|+||||+|||||+|+..+|++++||+++|
T Consensus 51 ~~~~~~~~~~l~f~~~~td~m~~~~~~~~~~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h 130 (388)
T PLN02259 51 DVYADLDWDNLGFGLNPADYMYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHN 130 (388)
T ss_pred cccccCCccccCCCCcccCceEEEEECCCCeEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHH
Confidence 46789999999999999999999999888899999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCCCCcEEEEEEeecCCccCC
Q 047617 83 AMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKG 162 (337)
Q Consensus 83 l~RL~~Sa~~l~i~~~~~~~l~~~i~~ll~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~ 162 (337)
++||.+||++|+||.|+.++|.+++.+++++|..|+|+.+.+.+|||++++|+++.+|+.|+.++++++++.|.++++.+
T Consensus 131 ~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~ 210 (388)
T PLN02259 131 AIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKE 210 (388)
T ss_pred HHHHHHhHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCcCCCCCcEEEEEEEechhhhhc
Confidence 99999999999999888999999999999999999998877799999999988766788776678899999998776543
Q ss_pred ---ceEEEEEeeceecCCCCCCCCccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCC
Q 047617 163 ---ALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPT 239 (337)
Q Consensus 163 ---~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l 239 (337)
++++.+.+++.|..|..++++|+++||+++++++++|+++||||+||+|..++|+|+|++++|||++++++|+||++
T Consensus 211 g~~~i~l~v~~~~~Ra~p~~~g~~K~~~NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l 290 (388)
T PLN02259 211 GMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPAT 290 (388)
T ss_pred CcceEEEEeecceeccCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEEEEEECCEEEcCCC
Confidence 45677665688999988999999889999999999999999999999996447999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHH
Q 047617 240 NGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILT 319 (337)
Q Consensus 240 ~~giL~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~ 319 (337)
+.+||+||||+.||++|++.|++|+|+.++++||.+|||+|+|||+.+|+||++|+++++.+.+..+.||++++|+++|.
T Consensus 291 ~~~iL~GITR~sIl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~~~~~~~~~~~g~~t~~L~~~l~ 370 (388)
T PLN02259 291 NGTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVEYKTGDESVCQKLRSVLV 370 (388)
T ss_pred cCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEEEEcCCcceEEEEEEEecCCceEEeCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998766765455456899999999999
Q ss_pred hhHccCCCCCCCCeEECC
Q 047617 320 GIQSGCIEDEMGWTVELD 337 (337)
Q Consensus 320 ~~~~~~~~~~~~w~~~~~ 337 (337)
++|+|+++|.++|+++|.
T Consensus 371 ~iq~G~~~~~~~W~~~~~ 388 (388)
T PLN02259 371 GIQTGLIEDNKGWVTDIN 388 (388)
T ss_pred HHHcCCCCCCCCCeEECC
Confidence 999999999999999874
No 3
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=7.8e-75 Score=557.43 Aligned_cols=334 Identities=61% Similarity=1.021 Sum_probs=308.6
Q ss_pred cccCCCCCCCCCCCCccCCceEEEEeCCCCeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhH
Q 047617 3 IEYANVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEEN 82 (337)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~H 82 (337)
.+++++||++||||.++||||+.++|..+..|.+++++|..+..|++.+++|+||||+|||||+|++.+|++.+|++++|
T Consensus 47 ~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~~~~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h 126 (384)
T PLN02883 47 EEYADVDWDKLGFSLVRTDFMFATKSCRDGNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELN 126 (384)
T ss_pred cccccCCchhcCcCCeecCceEEEEEcCCCcccCCeEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHH
Confidence 46789999999999999999999999888889999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCCCCcEEEEEEeecCCccC-
Q 047617 83 AMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHK- 161 (337)
Q Consensus 83 l~RL~~Sa~~l~i~~~~~~~l~~~i~~ll~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~- 161 (337)
++||.+||++|+||.++.++|.+++.++++.|..|+|+.+.+.+|||+++.++++.+|+.++.+++++|++.|.++++.
T Consensus 127 ~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~wvp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~ 206 (384)
T PLN02883 127 AMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKE 206 (384)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEeccccccc
Confidence 9999999999999988899999999999999999999877678999999998877788877777899999999987654
Q ss_pred --CceEEEEEeeceecCCCCCCCCccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCC
Q 047617 162 --GALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPT 239 (337)
Q Consensus 162 --~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l 239 (337)
+++++.+.+.++|..|++++++|+++||+++++++++|+++||||+||+|.+++|+|+|++++|||++++++|+||++
T Consensus 207 g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~~l~TP~l 286 (384)
T PLN02883 207 GTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPAT 286 (384)
T ss_pred CcceEEEEECccccccCCCCCcccchhhhHHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCC
Confidence 468887776678999999999999989999999999999999999999996434799999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHH
Q 047617 240 NGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILT 319 (337)
Q Consensus 240 ~~giL~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~ 319 (337)
+.+||+||||+.||++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.+|++.++.+.+....||++++|+++|.
T Consensus 287 ~~~iLpGITR~svl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~I~PV~~I~~~~~~~~~~~~~G~vt~~L~~~l~ 366 (384)
T PLN02883 287 SGTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYKVGDGIVTQQLRSILL 366 (384)
T ss_pred cCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEeeeccChhheEEEEEEeccCceeecccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998766544323235899999999999
Q ss_pred hhHccCCCCCCCCeEEC
Q 047617 320 GIQSGCIEDEMGWTVEL 336 (337)
Q Consensus 320 ~~~~~~~~~~~~w~~~~ 336 (337)
+||+|+++|.++|+++|
T Consensus 367 ~iq~G~~~d~~~W~~~~ 383 (384)
T PLN02883 367 GIQTGSIQDTKDWVLQI 383 (384)
T ss_pred HHHcCCCCCCCCCeEeC
Confidence 99999999999999987
No 4
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=1.8e-73 Score=546.30 Aligned_cols=334 Identities=62% Similarity=1.092 Sum_probs=301.4
Q ss_pred cccCCCCCCCCCCCCccCCceEEEEeCCCCeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhH
Q 047617 3 IEYANVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEEN 82 (337)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~H 82 (337)
+.++++||+++|||.+++|||+..+|+.+.+|+||++++.+++.|++.|+||+||||+|||||+|+..+|++.+|++++|
T Consensus 15 ~~~~~~~~~~~~f~~~~~~~m~~~~~~~~~~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~H 94 (355)
T PLN03117 15 EKYANVKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQN 94 (355)
T ss_pred ccccccCccccCCCccccCceEEEEcCCCCeEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHH
Confidence 46789999999999999999999999877899999999999999999999999999999999999877899888999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCCCCcEEEEEEeecCCcc--
Q 047617 83 AMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYH-- 160 (337)
Q Consensus 83 l~RL~~Sa~~l~i~~~~~~~l~~~i~~ll~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~-- 160 (337)
++||.+||++|+|+.|+.++|++.|.+++++|+.++|+...+.+|+|+.++|++...++.+.+++.+++++.|.+++.
T Consensus 95 l~RL~~Sa~~L~i~~p~~~~l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 174 (355)
T PLN03117 95 ALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKA 174 (355)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCCCCCcEEEEEEEeccccccC
Confidence 999999999999998889999999999999999887766667889999887766556666555677888888876543
Q ss_pred CCceEEEEEeeceecCCCCCCCCccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCC
Q 047617 161 KGALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTN 240 (337)
Q Consensus 161 ~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~ 240 (337)
.+|+++.+++.++|..|..++++|+++||+.+++++++|+++|+||+|++|.+++|+|+|++++|||++++++|+||+++
T Consensus 175 ~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~~~~l~TP~l~ 254 (355)
T PLN03117 175 SSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTS 254 (355)
T ss_pred CCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCc
Confidence 26898887655778888788999997699999999999999999999999963236999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHh
Q 047617 241 GTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTG 320 (337)
Q Consensus 241 ~giL~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~ 320 (337)
.+||+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.+|++.++.+.+....||+|++|+++|.+
T Consensus 255 ~~iL~GItR~~vl~la~~~Gi~v~Er~i~~~eL~~AdEvFltnT~~~I~PV~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (355)
T PLN03117 255 GTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKVKYRTGEEALSTKLHLILTN 334 (355)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEccHHHHhhCCEEEEccCcceEEEEEEEEecCceEEeCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986655554443348999999999999
Q ss_pred hHccCCCCCCCCeEEC
Q 047617 321 IQSGCIEDEMGWTVEL 336 (337)
Q Consensus 321 ~~~~~~~~~~~w~~~~ 336 (337)
+|+|+.+|.++|+++|
T Consensus 335 ~~~g~~~~~~~W~~~v 350 (355)
T PLN03117 335 IQMGVVEDKKGWMVEI 350 (355)
T ss_pred HhCCCCCCCCCCEEEc
Confidence 9999999999999987
No 5
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=2.1e-67 Score=505.01 Aligned_cols=329 Identities=43% Similarity=0.775 Sum_probs=289.1
Q ss_pred CCCCCCCCCCCccCCceEEEEeCCCCeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHH
Q 047617 7 NVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRM 86 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL 86 (337)
-+||..+||+.+.++||++.+|..+. |+||+++|.+++.|++.||||+||||+|||+|+|++.+|++++|++++|++||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~Hl~RL 94 (356)
T PRK13357 16 AIDWANLGFGYVFTDHMVVIDYKDGK-WHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRL 94 (356)
T ss_pred CCCccccCCCccccceeEEEEecCCc-ccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeeeChHHHHHHH
Confidence 36899999999999999999997654 99999999999999999999999999999999998778988899999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCCC-CCCcceEEEEEEEEecCCCCCcCCCCCcEEEEEEeecCCccC---C
Q 047617 87 QMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVP-PPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHK---G 162 (337)
Q Consensus 87 ~~Sa~~l~i~~~~~~~l~~~i~~ll~~~~~~~p-~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~---~ 162 (337)
.+||+.|+|+.++.++|++.+.+++++|+.+++ ....+.+|+|+++.++....|+.+...+++++++.|+++++. +
T Consensus 95 ~~Sa~~L~i~~~~~~~l~~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 174 (356)
T PRK13357 95 QRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVK 174 (356)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCCCCCccEEEEEEEEccCCcccccCCCccEEEEEEEechhhcccCCC
Confidence 999999999866899999999999999875432 122357899998876655566655556788888888765432 5
Q ss_pred ceEEEEEeeceecCCCCCCCCccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCC
Q 047617 163 ALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGT 242 (337)
Q Consensus 163 ~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~g 242 (337)
++++.+...+.|..|..++++|+..||+.+++|+++|+++|+||+||+|.+++|+|+|++++|||++++++++|||++.+
T Consensus 175 ~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNlF~v~~~~l~TPpl~~g 254 (356)
T PRK13357 175 PVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGS 254 (356)
T ss_pred ceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEEEEEECCEEEECCCCCC
Confidence 78887664677888877899999559999999999999999999999995226999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHcCCcEEEEecCHHH------HhccceeeeecCccceEEEEEEEeCC--eEEeeCCCccHHHHHH
Q 047617 243 ILPGITRKSIIEIARVLGYQVEERAILVEE------LFDAEEVFCTGTAVVVNPVNSITYQD--KRTEYKRGVGTVGQKL 314 (337)
Q Consensus 243 iL~GitR~~vl~~a~~~Gi~v~e~~i~~~e------L~~adevfltnt~~gi~pV~~I~~~~--~~i~~~~~~g~~~~~L 314 (337)
||+||||+.|+++|+++|++|+|+.++++| |.+|||+|+|||+.||+||++|++++ ..++ ++++||++++|
T Consensus 255 iL~GItR~~vlela~~~Gi~v~e~~i~~~el~~~~~L~~AdevFltnS~~gi~PV~~id~~~~~~~~~-~g~~g~~t~~L 333 (356)
T PRK13357 255 ILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKDKEFVIG-DGEVGPVTQKL 333 (356)
T ss_pred CCcchHHHHHHHHHHHCCCeEEEEecCHHHhhhhhccCcceEEEEcccccEEEEEEEEEeCCCEEEcC-CCCCChHHHHH
Confidence 999999999999999999999999999999 89999999999999999999997432 3442 46799999999
Q ss_pred HHHHHhhHccCCCCCCCCeEECC
Q 047617 315 YEILTGIQSGCIEDEMGWTVELD 337 (337)
Q Consensus 315 ~~~~~~~~~~~~~~~~~w~~~~~ 337 (337)
+++|.+.++|+.++..+|+++||
T Consensus 334 ~~~~~~~~~~~~~~~~~w~~~~~ 356 (356)
T PRK13357 334 YDELTGIQFGDVEDPHGWIVKVD 356 (356)
T ss_pred HHHHHHHhcCCCCCCCCCcEeCc
Confidence 99999999999999999999986
No 6
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-68 Score=489.24 Aligned_cols=331 Identities=53% Similarity=0.891 Sum_probs=313.2
Q ss_pred ccccCCCCCCCCCCCCccCCceEEEEeCCCCeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhh
Q 047617 2 VIEYANVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEE 81 (337)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~ 81 (337)
...+|.+||+.|+|+.+|||||+.+.|..+. |..|++.|..+..+++....||||+++||++++||+.+|++++||++.
T Consensus 39 ~~k~~~~d~~~L~fg~~~td~m~~~k~~~~g-w~~~~I~p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrPd~ 117 (379)
T KOG0975|consen 39 DEKPAPIDWDELGFGLVFTDHMLTIKWSEDG-WSQGEISPFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRPDQ 117 (379)
T ss_pred CCccCcCCHHHhccCCcccceeEEEeccccC-cCCCCccCcCCEeeChhhhceecchhhccccccccCCCCeEEEecchh
Confidence 4568999999999999999999999999766 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCCCCcEEEEEEeecCCccC
Q 047617 82 NAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHK 161 (337)
Q Consensus 82 Hl~RL~~Sa~~l~i~~~~~~~l~~~i~~ll~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~ 161 (337)
|++|+.+||.++.||.|+.+++.++|.+++..+..|+|+...+.+|||+++.|+++.+|+.+.++++++++++|..+|++
T Consensus 118 N~~Rm~~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~yf~ 197 (379)
T KOG0975|consen 118 NMDRMLRSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPYFK 197 (379)
T ss_pred hHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCcceEEEEEcccchhcc
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999886
Q ss_pred ---CceEEEEEeeceecCCCCCCCCccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCE--EEe
Q 047617 162 ---GALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENV--IST 236 (337)
Q Consensus 162 ---~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~--l~T 236 (337)
++++|.+.+.++|+.|+++++.|+.+||+++++++.||..+||+++|||+.+ +++|+|.++.|||+|++|+ |+|
T Consensus 198 ~g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d-~~~ItEv~tmNiF~v~~n~~elvT 276 (379)
T KOG0975|consen 198 SGFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGD-GGYITEVGTMNIFMVKKNEDELVT 276 (379)
T ss_pred ccccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecC-CCceeeccceeEEEEEcCceeEec
Confidence 6899999888999999999999999999999999999999999999999974 4599999999999999998 999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHcC-CcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEE---ee-CCCccHHH
Q 047617 237 PPTNGTILPGITRKSIIEIARVLG-YQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRT---EY-KRGVGTVG 311 (337)
Q Consensus 237 P~l~~giL~GitR~~vl~~a~~~G-i~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i---~~-~~~~g~~~ 311 (337)
||+++.|||||||+.|+++|++.| ++|+||.++++|+.+|+|+|.|||+..|.||.+|.+.+..+ .+ .|+.||++
T Consensus 277 Pp~dg~ILpGvTR~sileLa~~~g~~~V~Er~vtv~e~~~A~Evf~tGTA~~v~pV~~i~~~~~~i~~~~~~~g~~g~l~ 356 (379)
T KOG0975|consen 277 PPLDGTILPGVTRKSILELARDLGEFKVEERDVTVDELKTADEVFCTGTAAVVSPVGSILYKDEKIHIPTIGEGKEGPLA 356 (379)
T ss_pred CCCCCcccCCccHHHHHHHHHHhCceEEEEEEEeHHHhhhhHhhhcccceeeeccccceeecccccceeecCCCCccHHH
Confidence 999999999999999999999999 99999999999999999999999999999999999988322 23 46799999
Q ss_pred HHHHHHHHhhHccCCCCCCCCeEE
Q 047617 312 QKLYEILTGIQSGCIEDEMGWTVE 335 (337)
Q Consensus 312 ~~L~~~~~~~~~~~~~~~~~w~~~ 335 (337)
++|++.|.++|.|. ++..+|+++
T Consensus 357 ~~l~~~l~~iq~g~-~~~~~w~~~ 379 (379)
T KOG0975|consen 357 KKLLSTLTDIQYGR-EPKKGWTVP 379 (379)
T ss_pred HHHHHHHHHhhcCC-cCCCCcccC
Confidence 99999999999999 888999863
No 7
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=9.5e-63 Score=466.29 Aligned_cols=301 Identities=43% Similarity=0.764 Sum_probs=262.7
Q ss_pred eeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 047617 34 FSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHS 113 (337)
Q Consensus 34 ~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i~~ll~~ 113 (337)
|+||+++|.+++.|++.|||++||||+|||||+|+.++|++++|++++|++||.+||++|+|+.++.++|++.+.+++++
T Consensus 1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~ 80 (313)
T TIGR01123 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKA 80 (313)
T ss_pred CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999997778998889999999999999999999877899999999999999
Q ss_pred cCCCCCCC-CcceEEEEEEEEecCCCCCcCCCCCcEEEEEEeecCCccC---CceEEEEEeeceecCCCCCCCCccccch
Q 047617 114 NRRWVPPP-GKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHK---GALNLVVEEKFRRATPGGTGGVKAITNY 189 (337)
Q Consensus 114 ~~~~~p~~-~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~---~~~~l~~~~~~~r~~~~~~~~~Kt~~~y 189 (337)
|+.+++.. ..+.+|+|+++.+++...|+.+.+.+.+++++.|++.+.. +++++.+...+.|..|..++++|+..||
T Consensus 81 ~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~K~~~ny 160 (313)
T TIGR01123 81 NKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNY 160 (313)
T ss_pred ccccCCCCCCCCcEEEEeEEEecCCccccCCCCccEEEEEEEEchhhccccccceeEEecccceecCCCCCccceecccc
Confidence 87654322 2347899999887655567665556778888888765433 3446655445677777668999995599
Q ss_pred hhhHHHHHHHHHCCCCeEEEEecCCCCe--EEecCceeEEEEEC-CEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEEE
Q 047617 190 AIIYKPISEAKAKGFTDVLFLDAVTGKY--VEEASTSNIFVVKE-NVISTPPTNGTILPGITRKSIIEIARVLGYQVEER 266 (337)
Q Consensus 190 ~~~~~a~~~A~~~g~de~Llln~~~~g~--v~E~s~sNvf~v~~-~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~ 266 (337)
+.+++|+++|+++|+||+||+|. +|+ |+|++++|||++++ |+|+|||++.++|+||||+.|+++|+++|++|+|+
T Consensus 161 l~~vla~~eA~~~g~deal~ld~--~g~g~v~E~~~sNlf~v~~~g~l~Tp~l~~~~L~GItR~~vi~l~~~~Gi~v~e~ 238 (313)
T TIGR01123 161 AASLLAQAKAAEQGCDQVVYLDP--VEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEER 238 (313)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeC--CCCeEEEEcCcEeEEEEEcCCEEEeCCCCCCCCcchHHHHHHHHHHHcCCeEEEE
Confidence 99999999999999999999997 555 99999999999985 79999999999999999999999999999999999
Q ss_pred ecCHHHHhcc----ceeeeecCccceEEEEEEEeCCeEEee-CCCccHHHHHHHHHHHhhHccCCCCCCCCeEEC
Q 047617 267 AILVEELFDA----EEVFCTGTAVVVNPVNSITYQDKRTEY-KRGVGTVGQKLYEILTGIQSGCIEDEMGWTVEL 336 (337)
Q Consensus 267 ~i~~~eL~~a----devfltnt~~gi~pV~~I~~~~~~i~~-~~~~g~~~~~L~~~~~~~~~~~~~~~~~w~~~~ 336 (337)
+++++||.+| ||+|+|||+.||+||++|+++++.+.+ .+++||++++|+++|.++++|+.++..+|+++|
T Consensus 239 ~i~~~~l~~A~~~~devfltnS~~gi~PV~~i~~d~~~~~~~~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 313 (313)
T TIGR01123 239 RIDIDELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQYGDFEDPYGWIVEV 313 (313)
T ss_pred ecCHHHHHHHHhcCCEEEEccCceEEEEEEEEEECCeEEEcCCCCCChHHHHHHHHHHHHhcCCCCCCCCCeeeC
Confidence 9999999999 999999999999999999656765433 457999999999999999999889999999986
No 8
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=9.7e-62 Score=456.53 Aligned_cols=289 Identities=33% Similarity=0.570 Sum_probs=254.7
Q ss_pred eeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHH
Q 047617 34 FSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVH 112 (337)
Q Consensus 34 ~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~ll~ 112 (337)
|+||++++.+++.|++.|||++||||+|||+|++++.+|. .+|++++|++||.+||+.|+|+.| +.++|.+.+.++++
T Consensus 1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~ 79 (298)
T TIGR01122 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGP-AIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR 79 (298)
T ss_pred CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCCcc-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999998543322 267899999999999999999977 78999999999999
Q ss_pred HcCCCCCCCCcceEEEEEEEEecCCCCCcCCC--CCcEEEEEEeecCCcc-----CCceEEEEEeeceecCCCCC-CCCc
Q 047617 113 SNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPA--SEYTFVTYASPVGNYH-----KGALNLVVEEKFRRATPGGT-GGVK 184 (337)
Q Consensus 113 ~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~-----~~~~~l~~~~~~~r~~~~~~-~~~K 184 (337)
+++. .++|||++++++...+|+.++ .++++++++.|++.++ .+++++.++ +++|..+..+ +++|
T Consensus 80 ~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~-~~~r~~~~~~~~~~K 151 (298)
T TIGR01122 80 KNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVS-SWRRNAPNTIPTAAK 151 (298)
T ss_pred hcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEE-EEEcCCCCCcCccch
Confidence 9863 367999988765545666552 2577888888875432 268999887 4677766654 8999
Q ss_pred cccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEE
Q 047617 185 AITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVE 264 (337)
Q Consensus 185 t~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~ 264 (337)
+.+||+.+++++++|+++|+||+||+|. +|+|+|++++|||++++|+|+||+++.++|+||||+.|+++|+++|++|+
T Consensus 152 ~~~~yl~~v~a~~~a~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~~l~TP~~~~~~L~GItR~~il~la~~~g~~v~ 229 (298)
T TIGR01122 152 AGGNYLNSLLAKSEARRHGYDEAILLDV--EGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVV 229 (298)
T ss_pred hhhhhHHHHHHHHHHHHcCCCEEEEECC--CCCEEECCceEEEEEECCEEECCCCCCCcCcchHHHHHHHHHHHcCCcEE
Confidence 9866999999999999999999999997 79999999999999999999999999999999999999999999999999
Q ss_pred EEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhhHccCCCCCCCCeEEC
Q 047617 265 ERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGCIEDEMGWTVEL 336 (337)
Q Consensus 265 e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~~~~~~~~~~~w~~~~ 336 (337)
|+.++++||.+|||+|+|||++||+||++|+ ++.++ ++++||++++|+++|.+.+++..+++.+|++.|
T Consensus 230 e~~i~~~eL~~adevfltns~~gv~PV~~id--~~~~~-~~~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 298 (298)
T TIGR01122 230 EQPISREELYTADEAFFTGTAAEITPIREVD--GRKIG-NGRRGPVTKKLQEAFFDLVTGGTEDYWGWLTYV 298 (298)
T ss_pred EEeCCHHHHhhCCEEEEcCCcceEEEEEEEC--CEECC-CCCCChHHHHHHHHHHHHHcCCCCCcCCCceeC
Confidence 9999999999999999999999999999995 77763 568999999999999999999999999999864
No 9
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=2.7e-61 Score=454.98 Aligned_cols=292 Identities=32% Similarity=0.540 Sum_probs=257.2
Q ss_pred CCeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHH
Q 047617 31 GQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQ 109 (337)
Q Consensus 31 ~~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~ 109 (337)
+.+|+||++++.+++.|++.||||+||||+|||+|++++++|+. +|+|++|++||.+||+.|+|+.| +.++|.+.+.+
T Consensus 7 ~~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~~-~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~ 85 (306)
T PRK06606 7 GYIWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGPA-IFRLREHTKRLFNSAKILRMEIPYSVDELMEAQRE 85 (306)
T ss_pred CcEEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCCe-eeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 36899999999999999999999999999999999997765553 67799999999999999999987 78999999999
Q ss_pred HHHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCC-CCcEEEEEEeecCCcc-----CCceEEEEEeeceecCCCC-CCC
Q 047617 110 IVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPA-SEYTFVTYASPVGNYH-----KGALNLVVEEKFRRATPGG-TGG 182 (337)
Q Consensus 110 ll~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~-~~~~~~i~~~p~~~~~-----~~~~~l~~~~~~~r~~~~~-~~~ 182 (337)
++++++. .++|||++++++....++.+. ..+.+++++.|++.++ .+++++.++ ++.|..+.. +++
T Consensus 86 ~i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~ 157 (306)
T PRK06606 86 VVRKNNL-------KSAYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVS-SWTRHAPNSIPTR 157 (306)
T ss_pred HHHhcCC-------CCEEEEEEEEecCCccCcCCCCCCceEEEEEeccccccCcccccCCeEEEEe-eEecCCCCCcCcc
Confidence 9999873 367999998765545566543 3567778788765432 258998876 466766655 478
Q ss_pred CccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCc
Q 047617 183 VKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQ 262 (337)
Q Consensus 183 ~Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~ 262 (337)
+|+..||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|+|+|||++.|+|+||||+.|+++|+++|++
T Consensus 158 ~K~~~nyl~~vla~~ea~~~G~de~l~l~~--~g~v~E~~~sNlf~v~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~ 235 (306)
T PRK06606 158 AKASGNYLNSILAKTEARRNGYDEALLLDV--EGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIE 235 (306)
T ss_pred hhhhhccHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEECCCCcCCcCCCHHHHHHHHHHHHcCCc
Confidence 998669999999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred EEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhhHccCCCCCCCCeEEC
Q 047617 263 VEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGCIEDEMGWTVEL 336 (337)
Q Consensus 263 v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~~~~~~~~~~~w~~~~ 336 (337)
|+|+.++++||.+|||+|+|||++||+||++|+ ++.++ ++++||++++|+++|.+.+.++.+|+.+|++.+
T Consensus 236 v~e~~i~~~eL~~AdevfltnS~~gi~PV~~id--~~~~~-~g~~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 306 (306)
T PRK06606 236 VIERRITRDELYIADEVFFTGTAAEVTPIREVD--GRQIG-NGKRGPITEKLQSAYFDIVRGRTEKYAHWLTPV 306 (306)
T ss_pred EEEEeCCHHHHhhCCEEEEcCCcceEEEEEEEC--cEECC-CCCCCHHHHHHHHHHHHHHcCCCCCCCCCcccC
Confidence 999999999999999999999999999999995 77763 567999999999999999999889999998764
No 10
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=1.3e-58 Score=435.32 Aligned_cols=275 Identities=28% Similarity=0.433 Sum_probs=243.2
Q ss_pred CeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHH
Q 047617 32 QKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQI 110 (337)
Q Consensus 32 ~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~l 110 (337)
.+|+||++++.+++.|+++|||++||||+|||||++ +|+ +|++++|++||.+||+.|+|+.| +.+++.+.+.++
T Consensus 5 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~ 79 (299)
T PRK12479 5 YIYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSY---GGN--VFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQT 79 (299)
T ss_pred EEEECCEEeEHHHCccccccchhheeeeEEEEEEEE---CCE--ecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 589999999999999999999999999999999997 777 57789999999999999999987 789999999999
Q ss_pred HHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCC--CCcEEEEEEeecCCcc----CCceEEEEEeeceecCCCCC-CCC
Q 047617 111 VHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPA--SEYTFVTYASPVGNYH----KGALNLVVEEKFRRATPGGT-GGV 183 (337)
Q Consensus 111 l~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~----~~~~~l~~~~~~~r~~~~~~-~~~ 183 (337)
+++++. .+.|||+.++++...+++.+. .++++++++.|++.+. .+|+++.++ .+.|..|+.+ +.+
T Consensus 80 i~~~~~-------~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~-~~~r~~~~~~~~~~ 151 (299)
T PRK12479 80 LQKNEY-------ADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSV-ASRRNTPDALDPRI 151 (299)
T ss_pred HHHcCC-------CCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCCeEEEEE-eEeccCCCccCccc
Confidence 998763 467899888765445666543 3568888888875332 368888776 4667666655 689
Q ss_pred ccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcE
Q 047617 184 KAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQV 263 (337)
Q Consensus 184 Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v 263 (337)
|+. ||+.+++++++|+++|+||+||+|. +|+|+|++++|||++++++|+|||++.|+|+||||+.|+++|+++|++|
T Consensus 152 K~~-nyl~~vla~~ea~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~~l~TP~l~~giL~GItR~~il~~~~~~g~~v 228 (299)
T PRK12479 152 KSM-NYLNNVLVKIEAAQAGVLEALMLNQ--QGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPC 228 (299)
T ss_pred hhh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHcCCeE
Confidence 996 9999999999999999999999997 7999999999999999999999999999999999999999999999999
Q ss_pred EEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhhHccC
Q 047617 264 EERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGC 325 (337)
Q Consensus 264 ~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~~~~~ 325 (337)
+|+.++++||.+|||+|+|||++||+||++|+ ++.++ ++++||++++|+++|.+.+++.
T Consensus 229 ~e~~i~~~~L~~adevfltnS~~gi~PV~~id--~~~~~-~~~~g~~~~~l~~~~~~~~~~~ 287 (299)
T PRK12479 229 EERPFTRHDVYVADEVFLTGTAAELIPVVKVD--SREIG-DGKPGSVTKQLTEEFKKLTRER 287 (299)
T ss_pred EEEeCCHHHHHhCCeeeeecCcccEEEEEEEC--CEEcC-CCCcCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999995 77763 5688999999999998877664
No 11
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=4.3e-58 Score=429.33 Aligned_cols=272 Identities=27% Similarity=0.376 Sum_probs=232.2
Q ss_pred CeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHH
Q 047617 32 QKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQI 110 (337)
Q Consensus 32 ~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~l 110 (337)
.+|+||++++.+.+.|+++||||+||||+|||+|+| +|+ .|++++|++||.+||+.|+|+.| +.++|.+.+.++
T Consensus 8 ~~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~ 82 (286)
T PRK13356 8 WTFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAF---EGV--TPDLDLHCARVNRSAEALGLKPTVSAEEIEALAREG 82 (286)
T ss_pred eEEECCEEcchhhcccccccchhhhcceeEEEEEEe---cCC--CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 589999999999999999999999999999999998 666 56799999999999999999876 789999999999
Q ss_pred HHHcCCCCCCCCcceEEEEEEEEecCCCC-CcCCC-CCcEEEEEEeecCCccCCceEEEEEeeceecCCCCC-CCCcccc
Q 047617 111 VHSNRRWVPPPGKGTMYIRPLLMGNGPDL-GVAPA-SEYTFVTYASPVGNYHKGALNLVVEEKFRRATPGGT-GGVKAIT 187 (337)
Q Consensus 111 l~~~~~~~p~~~~~~~~iR~~~~g~~~~~-~~~~~-~~~~~~i~~~p~~~~~~~~~~l~~~~~~~r~~~~~~-~~~Kt~~ 187 (337)
+++++. ..++|||++++++.... +..+. ..+.+.+...+.+....+++++.++ +++|..+..+ +++|+.+
T Consensus 83 i~~~~~------~~~~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~ 155 (286)
T PRK13356 83 LKRFDP------DTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSLTLS-PFRRPTLEMAPTDAKAGC 155 (286)
T ss_pred HHHcCC------CCcEEEEEEEEeccCcccCcCCCcCCceEEEEEEccCCCCCCcEEEEEe-eeecCCCCCCCccceecc
Confidence 998863 24679998887543222 33332 2344445455443222268999876 4677665543 6789877
Q ss_pred chhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEEEe
Q 047617 188 NYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERA 267 (337)
Q Consensus 188 ~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~~ 267 (337)
||+.+++|+++|+++|+||+||+|. +|+|+|++++|||++++|+|+||+++.++|+||||+.|+++|+++|++|+|++
T Consensus 156 nyl~~vla~~ea~~~g~deal~ld~--~G~v~E~~~sNlf~v~~~~l~TP~~~~~~L~GItR~~vi~~a~~~gi~v~e~~ 233 (286)
T PRK13356 156 LYPNNARALREARSRGFDNALVLDM--LGNVAETATSNVFMVKDGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVETT 233 (286)
T ss_pred chHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEEcCCCCCCcccCHHHHHHHHHHHHcCCeEEEEe
Confidence 9999999999999999999999997 79999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhhHc
Q 047617 268 ILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQS 323 (337)
Q Consensus 268 i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~~~ 323 (337)
++++||.+|||+|+|||++||+||++|+ ++.+ ++||++++|+++|.+..+
T Consensus 234 i~~~eL~~adevfltns~~gi~PV~~id--~~~~----~~g~~~~~l~~~~~~~~~ 283 (286)
T PRK13356 234 LTYEDFLEADEVFSTGNYSKVVPVTRFD--DRSL----QPGPVTRRARELYWDWAH 283 (286)
T ss_pred cCHHHHHhcCceEEecChheEEEEEEEC--CEEe----cCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999995 7775 379999999999987544
No 12
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=6.4e-58 Score=429.38 Aligned_cols=275 Identities=31% Similarity=0.468 Sum_probs=237.6
Q ss_pred CCeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHH
Q 047617 31 GQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQ 109 (337)
Q Consensus 31 ~~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~ 109 (337)
+.+|+||++++.+++.|+++||||+||||+|||+|++ +|+ +|++++|++||.+||+.|+|+.| +.+.+.+.+.+
T Consensus 9 ~~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~ 83 (292)
T PRK07544 9 GFIWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAY---GGK--IFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKE 83 (292)
T ss_pred CeEEECCEEEEhHHCccChhhhHhhhcceeEEeeEee---CCc--ccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999998 676 57799999999999999999987 78999999999
Q ss_pred HHHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCC-CCcEEEEEEeecCCcc-----CCceEEEEEeeceecCCCCC-CC
Q 047617 110 IVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPA-SEYTFVTYASPVGNYH-----KGALNLVVEEKFRRATPGGT-GG 182 (337)
Q Consensus 110 ll~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~-~~~~~~i~~~p~~~~~-----~~~~~l~~~~~~~r~~~~~~-~~ 182 (337)
+++.|+. .+.+||++++++....|+.++ ..+.+++...|.++++ .+++++.++ .++|..|..+ +.
T Consensus 84 ~i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~ 155 (292)
T PRK07544 84 TLAANGL-------TDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIA-KWRRPDPETAPSA 155 (292)
T ss_pred HHHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccCccccCCCEEEEEe-EEEcCCCCCcCHh
Confidence 9999863 367999988765544565443 2345666665544322 268999876 4677666544 46
Q ss_pred CccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCc
Q 047617 183 VKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQ 262 (337)
Q Consensus 183 ~Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~ 262 (337)
+|+.+||+.+++++++|+++|+||+||+|. +|+|+|++++|||+++||+|+||+++ ++|+||||+.|+++|+++|++
T Consensus 156 ~k~~~~yl~~vla~~~A~~~G~deal~ld~--~g~V~E~~~sNlf~v~~~~l~TP~~~-~~L~GItR~~vl~~a~~~g~~ 232 (292)
T PRK07544 156 AKAAGLYMICTISKHAAEAKGYADALMLDY--RGYVAEATGANIFFVKDGVIHTPTPD-CFLDGITRQTVIELAKRRGIE 232 (292)
T ss_pred hhhhcccHHHHHHHHHHHHcCCCeEEEECC--CCCEEEcCceEEEEEECCEEECCCCc-ccccchhHHHHHHHHHHcCCe
Confidence 688778999999999999999999999997 79999999999999999999999986 599999999999999999999
Q ss_pred EEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhhHccCCC
Q 047617 263 VEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGCIE 327 (337)
Q Consensus 263 v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~~~~~~~ 327 (337)
|+|++++++||.+|||+|+|||++||+||++|+ ++.+ ++||++++|+++|.+.+++++.
T Consensus 233 v~e~~i~~~eL~~adevfltnS~~gi~PV~~i~--~~~~----~~g~~~~~l~~~~~~~~~~~~~ 291 (292)
T PRK07544 233 VVERHIMPEELAGFSECFLTGTAAEVTPVSEIG--EYRF----TPGAITRDLMDDYEALVRPRAA 291 (292)
T ss_pred EEEEecCHHHHhhcCceeecCccceEEEEEEEe--eEEe----CCChHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999995 6664 3799999999999988877653
No 13
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.7e-57 Score=425.72 Aligned_cols=274 Identities=31% Similarity=0.488 Sum_probs=239.7
Q ss_pred CeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHH
Q 047617 32 QKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQI 110 (337)
Q Consensus 32 ~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~l 110 (337)
.+|+||++++..++.|+++|||++||||+|||++++ +|+ +|++++|++||.+||+.|+|+.| +.+++++.+.++
T Consensus 4 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~ 78 (288)
T PRK08320 4 LIYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAY---NGR--VFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLET 78 (288)
T ss_pred EEEECCEEEEHHHCcccccchhhhhcceEEEEEEEE---CCE--eecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Confidence 589999999999999999999999999999999997 777 57789999999999999999877 789999999999
Q ss_pred HHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCC--CCcEEEEEEeecCCcc----CCceEEEEEeeceecCCCCC-CCC
Q 047617 111 VHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPA--SEYTFVTYASPVGNYH----KGALNLVVEEKFRRATPGGT-GGV 183 (337)
Q Consensus 111 l~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~----~~~~~l~~~~~~~r~~~~~~-~~~ 183 (337)
+++++. .+.+||+.++++....|+.+. .++.++++..|.+++. .+|+++.+.+ +.|..++.+ +++
T Consensus 79 i~~~~~-------~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~r~~~~~~~~~~ 150 (288)
T PRK08320 79 LRKNNL-------RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLKVITVS-TRRNRPDALSPQV 150 (288)
T ss_pred HHhcCC-------CCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeEEEEEe-eeccCCCCcCccc
Confidence 998763 467899988765445666553 3556777777764332 2688887764 566665554 689
Q ss_pred ccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcE
Q 047617 184 KAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQV 263 (337)
Q Consensus 184 Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v 263 (337)
|+. ||+.+++++++|+++|+||+|++|+ +|+|+|++++|||++++|+|+|||++.++|+||||+.++++|+++|++|
T Consensus 151 K~~-nyl~~v~a~~~A~~~g~de~L~ld~--~g~v~E~s~sNlf~~~~~~l~TP~~~~~~L~GitR~~ll~~~~~~g~~v 227 (288)
T PRK08320 151 KSL-NYLNNILAKIEANLAGVDEAIMLND--EGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPV 227 (288)
T ss_pred hhh-hhHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCcEEEEEEECCEEECCCCcCCCCcCHHHHHHHHHHHHcCCeE
Confidence 997 9999999999999999999999997 7999999999999999999999999999999999999999999999999
Q ss_pred EEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhhHcc
Q 047617 264 EERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSG 324 (337)
Q Consensus 264 ~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~~~~ 324 (337)
+|+.++++||.+|||+|+|||++||+||++|+ ++.++ ++++|+++++|+++|.+.+..
T Consensus 228 ~e~~l~~~dL~~ade~f~~ns~~gv~pV~~i~--~~~~~-~~~~g~~~~~l~~~~~~~~~~ 285 (288)
T PRK08320 228 REELFTLHDLYTADEVFLTGTAAEVIPVVKVD--GRVIG-DGKPGPITKKLLEEFRELTKK 285 (288)
T ss_pred EEEECCHHHHHhCCEEEEecChhhEEEEEEEC--CEECC-CCCcCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999994 67653 567899999999999876543
No 14
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=2.2e-57 Score=423.08 Aligned_cols=274 Identities=49% Similarity=0.847 Sum_probs=238.2
Q ss_pred ccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCcce
Q 047617 46 EMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGT 125 (337)
Q Consensus 46 ~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i~~ll~~~~~~~p~~~~~~ 125 (337)
.|+++|||++||||+|||+|+++..||+.++|++++|++||.+||+.|+|+.++.+++.+.+.+++++|+.|.|+....+
T Consensus 1 ~i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~ 80 (279)
T cd01557 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGAS 80 (279)
T ss_pred CcCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCC
Confidence 47899999999999999999996444544478899999999999999999944899999999999999987766554457
Q ss_pred EEEEEEEEecCCCCCcCCCCCcEEEEEEeecCCccC---CceEEEEEeeceecCCCCCCCCccccchhhhHHHHHHHHHC
Q 047617 126 MYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHK---GALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAK 202 (337)
Q Consensus 126 ~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~---~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~ 202 (337)
+|||+.++++....|+.++.++++++++.|++++.. +++++.++ +++|..|...+.+|+..||+.+++++++|+++
T Consensus 81 ~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~ 159 (279)
T cd01557 81 LYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEK 159 (279)
T ss_pred EEEEEEEEeccccCCcCCCCccEEEEEEEEccccccCCCCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHC
Confidence 899999886655566655456788888888765442 68998877 56777775567899756999999999999999
Q ss_pred CCCeEEEEecCCC-CeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEEEecCHHHHhccceeee
Q 047617 203 GFTDVLFLDAVTG-KYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFC 281 (337)
Q Consensus 203 g~de~Llln~~~~-g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfl 281 (337)
|+||+||+|. + |+|+|++++|||++++++|+||+++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+
T Consensus 160 g~de~l~ld~--~~g~v~E~~~sNlf~v~~~~l~TP~~~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~ 237 (279)
T cd01557 160 GYDQALWLDG--AHGYVAEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFA 237 (279)
T ss_pred CCCEEEEEcC--CCCEEEEeCcEEEEEEECCEEEcCCCcCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEE
Confidence 9999999997 6 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccceEEEEEEEeCCeEEe-eCCCccHHHHHHHHHHHhhHcc
Q 047617 282 TGTAVVVNPVNSITYQDKRTE-YKRGVGTVGQKLYEILTGIQSG 324 (337)
Q Consensus 282 tnt~~gi~pV~~I~~~~~~i~-~~~~~g~~~~~L~~~~~~~~~~ 324 (337)
|||++||+||++|+ ++.+. .++++||++++|+++|.+.++|
T Consensus 238 ~ns~~gi~pV~~i~--~~~~~~~~~~~gp~~~~l~~~~~~~~~~ 279 (279)
T cd01557 238 TGTAAVVTPVGEID--YRGKEPGEGEVGPVTKKLYDLLTDIQYG 279 (279)
T ss_pred ecceeEEEEEEEEc--cccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999995 66651 1457999999999999998875
No 15
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=2.5e-57 Score=423.64 Aligned_cols=272 Identities=25% Similarity=0.350 Sum_probs=235.2
Q ss_pred eeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHH
Q 047617 33 KFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIV 111 (337)
Q Consensus 33 ~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~ll 111 (337)
+|+||++++.+++.++++|||++||||+|||||++ +|+ +|++++|++||.+||+.|+|+.+ +.+++++.+.+++
T Consensus 2 ~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~ 76 (283)
T PRK07650 2 IYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIY---NGH--PFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLL 76 (283)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CCE--EEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999997 777 46689999999999999999987 7899999999999
Q ss_pred HHcCCCCCCCCcceEEEEEEEEecCCCCCcCCC--CCcEEEEEEeecCCccC-CceEEEEEeeceecCCCCCCCCccccc
Q 047617 112 HSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPA--SEYTFVTYASPVGNYHK-GALNLVVEEKFRRATPGGTGGVKAITN 188 (337)
Q Consensus 112 ~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~~-~~~~l~~~~~~~r~~~~~~~~~Kt~~~ 188 (337)
++++. .+++||++++++....++.+. ..++++++..|+++... ......+. ...|..+..++++|++ |
T Consensus 77 ~~~~~-------~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Kt~-~ 147 (283)
T PRK07650 77 EKNGL-------ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVL-KQRRNTPEGAFRLKSH-H 147 (283)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEEEE-EEEecCCCCCcchhHH-h
Confidence 98763 467999988765434455433 35778888888754221 11122222 3556666678899996 9
Q ss_pred hhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEEEec
Q 047617 189 YAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAI 268 (337)
Q Consensus 189 y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~~i 268 (337)
|+.+++++++|.++|+||+||+|+ +|+|+|++++|||++++|+|+|||+++|+|+||||+.++++|+++|++|+|+.+
T Consensus 148 y~~~v~a~~~a~~~g~de~llln~--~G~v~E~s~sNif~v~~g~l~TP~l~~g~L~GitR~~li~~~~~~g~~v~e~~i 225 (283)
T PRK07650 148 YLNNILGKREIGNDPNKEGIFLTE--EGYVAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFY 225 (283)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECC--CCeEEEcCceEEEEEECCEEEcCCCcCCCcccHHHHHHHHHHHHcCCeEEEEec
Confidence 999999999999999999999997 799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhhHcc
Q 047617 269 LVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSG 324 (337)
Q Consensus 269 ~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~~~~ 324 (337)
+++||.+|||+|+|||++|++||.+|+ ++.+ ++++||+++.|+++|.+.+..
T Consensus 226 ~~~dL~~adeifl~ns~~gv~pV~~i~--~~~~--~g~~g~~~~~l~~~~~~~~~~ 277 (283)
T PRK07650 226 TKEELLSADEVFVTNSIQEIVPLTRIE--ERDF--PGKVGMVTKRLQNLYEMQREK 277 (283)
T ss_pred CHHHHhhCCEeeeecCcccEEEEEEEC--CEEe--CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999995 7775 468999999999999876554
No 16
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=2.9e-56 Score=424.69 Aligned_cols=273 Identities=21% Similarity=0.261 Sum_probs=234.2
Q ss_pred CeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHH
Q 047617 32 QKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQI 110 (337)
Q Consensus 32 ~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~l 110 (337)
.+|+||++++.+++.|+++|||++||||+|||||++ +|+ +|++++|++||.+||+.|+|+.| +.+++++.+.++
T Consensus 42 ~~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~---~G~--~~~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~ 116 (336)
T PLN02845 42 SSVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIR---DGH--LYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQT 116 (336)
T ss_pred eEEECCEEccHHHCcccccccceeecceEEEEEEEE---CCE--EcCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Confidence 689999999999999999999999999999999997 777 57789999999999999999987 889999999999
Q ss_pred HHHcCCCCCCCCcceEEEEEEEEecCCCCCcCC--CCCcEEEEEEeecCCcc--CCceEEEEEeeceecCCCCCCCCccc
Q 047617 111 VHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAP--ASEYTFVTYASPVGNYH--KGALNLVVEEKFRRATPGGTGGVKAI 186 (337)
Q Consensus 111 l~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~--~~~~~~~i~~~p~~~~~--~~~~~l~~~~~~~r~~~~~~~~~Kt~ 186 (337)
+++++. .+.+||+++..+....++.+ ...+++++...|.+... .+++++.+++ +++.. ..++++|++
T Consensus 117 i~~~~~-------~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~gv~l~~~~-~~~~~-~~~~~~Kt~ 187 (336)
T PLN02845 117 VAASGC-------RNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTSS-VPIKP-PQFATVKSV 187 (336)
T ss_pred HHhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEccccccccccCCeEEEEee-eeecC-Cccccchhh
Confidence 999863 35678877765433344433 24567777776654222 3688887764 45533 346789996
Q ss_pred cchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEE-CCEEEeCCCCCCCCCChHHHHHHHHHHHc---C--
Q 047617 187 TNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVK-ENVISTPPTNGTILPGITRKSIIEIARVL---G-- 260 (337)
Q Consensus 187 ~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~-~~~l~TP~l~~giL~GitR~~vl~~a~~~---G-- 260 (337)
||+.+++|+++|+++|+||+||+|. +|+|+|++++||||++ +++|+|||++ ++|+||||+.||++|+++ |
T Consensus 188 -nyl~~vla~~eA~~~G~deaLlln~--~G~V~Egt~sNiF~v~~~~~l~TP~l~-~iL~GItR~~vlela~~~~~~G~~ 263 (336)
T PLN02845 188 -NYLPNALSQMEAEERGAFAGIWLDE--EGFVAEGPNMNVAFLTNDGELVLPPFD-KILSGCTARRVLELAPRLVSPGDL 263 (336)
T ss_pred -hhHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCcceEEEEEECCEEEeCCCC-CcCccHHHHHHHHHHHhhhccCCc
Confidence 9999999999999999999999997 7999999999999885 9999999987 599999999999999986 8
Q ss_pred CcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhhHccC
Q 047617 261 YQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGC 325 (337)
Q Consensus 261 i~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~~~~~ 325 (337)
++|+|+.++++||.+|||+|+|||++||+||++|+ ++.++ +|++||++++|+++|.+.++..
T Consensus 264 i~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~~id--~~~~~-~g~~gp~t~~L~~~~~~~~~~~ 325 (336)
T PLN02845 264 RGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWD--GQPIG-DGKVGPITLALHDLLLDDMRSG 325 (336)
T ss_pred eEEEEEecCHHHHhcCCEEEEecCcccEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999995 77763 5689999999999999877664
No 17
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=4.3e-56 Score=415.79 Aligned_cols=271 Identities=21% Similarity=0.334 Sum_probs=231.8
Q ss_pred CCeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHH
Q 047617 31 GQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQ 109 (337)
Q Consensus 31 ~~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~ 109 (337)
+.+|+||++++.+++.|++.|||++||||+|||+|++ +|+ +|++++|++||.+||+.|+|+.| +.+++.+.+.+
T Consensus 3 ~~~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~ 77 (286)
T PRK06680 3 RIAYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVR---DGK--LVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLRE 77 (286)
T ss_pred cEEEECCEEEEHHHCcccccccccceeeEEEEEEEEE---CCE--EechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 3689999999999999999999999999999999998 777 46789999999999999999977 78999999999
Q ss_pred HHHHcCCCCCCCCcceEEEEEEEEecCCCCCcC-C--CCCcEEEEEEeecCCc-----cCCceEEEEEeeceecCCCCCC
Q 047617 110 IVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVA-P--ASEYTFVTYASPVGNY-----HKGALNLVVEEKFRRATPGGTG 181 (337)
Q Consensus 110 ll~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~-~--~~~~~~~i~~~p~~~~-----~~~~~~l~~~~~~~r~~~~~~~ 181 (337)
++++|+. .+.++|+.+.++....+.. + ...+.+++++.|++++ ..+++++.+.+.. | ...+
T Consensus 78 ~~~~~~~-------~~~~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~~~-~---~~~~ 146 (286)
T PRK06680 78 LIRRNRV-------REGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVPDN-R---WKRC 146 (286)
T ss_pred HHHHcCC-------CceEEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEecCC-C---CCCC
Confidence 9999864 2446666665332223332 2 2357788888887641 1368887765322 2 1346
Q ss_pred CCccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEE-ECCEEEeCCCCCCCCCChHHHHHHHHHHHcC
Q 047617 182 GVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV-KENVISTPPTNGTILPGITRKSIIEIARVLG 260 (337)
Q Consensus 182 ~~Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v-~~~~l~TP~l~~giL~GitR~~vl~~a~~~G 260 (337)
++|+. ||+.+++++++|+++|+||+|++| +|+|+|++++|||++ ++|+|+|||++.++|+||||+.++++|++.|
T Consensus 147 ~~Ks~-nyl~~vla~~eA~~~g~dd~l~ld---~g~v~E~~~sN~f~~~~~~~l~TP~~~~~iL~Gitr~~il~~a~~~g 222 (286)
T PRK06680 147 DIKSV-GLLPNVLAKQAAKEAGAQEAWMVD---DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKELG 222 (286)
T ss_pred Ccchh-ccHHHHHHHHHHHHCCCCEEEEec---CCEEEEcCcEEEEEEEECCEEEeCCCCCCCCcCHHHHHHHHHHHHcC
Confidence 89997 999999999999999999999998 489999999999999 9999999999999999999999999999999
Q ss_pred CcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhhHcc
Q 047617 261 YQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSG 324 (337)
Q Consensus 261 i~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~~~~ 324 (337)
++|+|+.++++||.+|||+|+|||++||+||++|+ ++.++ ++++||++++|+++|.+.+++
T Consensus 223 ~~v~e~~i~~~el~~ade~f~~ns~~gi~pV~~id--~~~~~-~~~~g~~~~~L~~~~~~~~~~ 283 (286)
T PRK06680 223 LEVEERPFTLQEAYAAREAFITAASSFVFPVVQID--GKQIG-NGKPGPIAKRLREAYEEFARL 283 (286)
T ss_pred CeEEEEcCCHHHHhcCcEEEEecCcccEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999995 77763 467899999999999887665
No 18
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=8.3e-56 Score=414.64 Aligned_cols=271 Identities=19% Similarity=0.269 Sum_probs=226.0
Q ss_pred CeeeCCeeeeCCC--cccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHH
Q 047617 32 QKFSQGTLTRFGK--TEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVK 108 (337)
Q Consensus 32 ~~~~ng~~~~~~~--~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~ 108 (337)
.+|+||+++|.++ +.|++.|||++||||+|||||++ +|+ +|++++|++||.+||+.|+|+.| +.+++++.+.
T Consensus 6 ~~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~~l~ 80 (290)
T PRK12400 6 FVLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLY---KGN--FHLLDPHITRLYRSMEEIELTLPFSKAELITLLY 80 (290)
T ss_pred EEEECCEEechHHcCceeccccchhhhcceEEEEEEEE---CCE--ecccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 6899999999994 55999999999999999999997 777 46689999999999999999987 7889999999
Q ss_pred HHHHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCC--CCcEEEEEEeecCCc---cCCceEEEEEeeceecCCCCCCCC
Q 047617 109 QIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPA--SEYTFVTYASPVGNY---HKGALNLVVEEKFRRATPGGTGGV 183 (337)
Q Consensus 109 ~ll~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~---~~~~~~l~~~~~~~r~~~~~~~~~ 183 (337)
+++++++. ..+.+||+.+.++....+..++ ..+++++++.+.+.. ..+++++...+. . +...+++
T Consensus 81 ~~~~~~~~------~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~---~~~~~~~ 150 (290)
T PRK12400 81 KLIENNNF------HEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISEPD-T---RWLRCDI 150 (290)
T ss_pred HHHHhcCC------CCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCchhHHhcCcEEEECCC-C---CccCCCC
Confidence 99998862 1245677776644323343322 345666666554321 126777654321 1 1224678
Q ss_pred ccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcE
Q 047617 184 KAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQV 263 (337)
Q Consensus 184 Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v 263 (337)
|++ ||+.+++++++|+++|+||+||+| +|+|+|++++|||++++|+|+|||++.|+|+||||+.|+++|+++|++|
T Consensus 151 Kt~-nyl~~vla~~ea~~~g~deaL~l~---~g~v~E~t~sNif~v~~~~l~TPpl~~g~L~GItR~~llela~~~gi~v 226 (290)
T PRK12400 151 KSL-NLLPNILAATKAERKGCKEALFVR---NGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPV 226 (290)
T ss_pred ccc-ccHHHHHHHHHHHHcCCCEEEEEc---CCEEEEcCceEEEEEECCEEEeCCCCCCcCcCHHHHHHHHHHHHcCCcE
Confidence 996 999999999999999999999995 5999999999999999999999999999999999999999999999999
Q ss_pred EEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhhHcc
Q 047617 264 EERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSG 324 (337)
Q Consensus 264 ~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~~~~ 324 (337)
+|+.++++||.+|||+|+|||+.||+||++|+ ++.++ ++++||++++|+++|.+.+..
T Consensus 227 ~E~~i~~~eL~~Adevfltns~~gv~PV~~i~--~~~~~-~~~~g~~t~~l~~~~~~~~~~ 284 (290)
T PRK12400 227 QEELFSVRDVYQADECFFTGTTIEILPMTHLD--GTAIQ-DGQVGPITKMLQRSFSQSLLQ 284 (290)
T ss_pred EEEeCCHHHHHhCCeeeEccCcceEEEEEEEC--CEECC-CCCcCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999995 77763 568999999999999875543
No 19
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=6.9e-56 Score=411.23 Aligned_cols=263 Identities=30% Similarity=0.448 Sum_probs=226.1
Q ss_pred eeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHH
Q 047617 34 FSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVH 112 (337)
Q Consensus 34 ~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~ll~ 112 (337)
|+||++++.+++.|++.|||++||||+|||||++ +|+ +|++++|++||.+||+.|+|+.+ +.+++++.+.++++
T Consensus 1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~ 75 (270)
T cd01558 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVY---NGK--PFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVA 75 (270)
T ss_pred CcCCeEeEHHHCccccccchhcccceEEEEEEEE---CCE--EecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998 676 57789999999999999999876 78899999999999
Q ss_pred HcCCCCCCCCcceEEEEEEEEecCCCCCcCC--CCCcEEEEEEeecCCc----cCCceEEEEEeeceecCCCCCCCCccc
Q 047617 113 SNRRWVPPPGKGTMYIRPLLMGNGPDLGVAP--ASEYTFVTYASPVGNY----HKGALNLVVEEKFRRATPGGTGGVKAI 186 (337)
Q Consensus 113 ~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~--~~~~~~~i~~~p~~~~----~~~~~~l~~~~~~~r~~~~~~~~~Kt~ 186 (337)
+++. ..+.+++++ .+|.+ ..++.+ ...+.+++.+.|++++ ..+++++.+.+ ..|. ..+++|++
T Consensus 76 ~~~~-----~~~~~~~~~-t~g~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~-~~~~---~~~~~K~~ 144 (270)
T cd01558 76 KNEG-----GEGDVYIQV-TRGVG-PRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITVP-DIRW---LRCDIKSL 144 (270)
T ss_pred HcCC-----CCceEEEEE-EeCCC-ccCCCCCCCCCCEEEEEEEecCCCChhhhhcCeEEEEec-cccc---CCCCchhh
Confidence 8863 235667775 45544 234433 2356677777777532 23688887764 3442 23689996
Q ss_pred cchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEEE
Q 047617 187 TNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEER 266 (337)
Q Consensus 187 ~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~ 266 (337)
||+.+++++++|+++|+||+||+|. +|+|+|++++|||++++|+|+|||++.++|+||||+.|+++|+++|++|+|+
T Consensus 145 -ny~~~~~a~~~a~~~g~de~l~ld~--~g~v~E~~~sNif~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~ 221 (270)
T cd01558 145 -NLLNNVLAKQEAKEAGADEAILLDA--DGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEER 221 (270)
T ss_pred -ccHHHHHHHHHHHHcCCCEEEEEcC--CCEEEEcCcEEEEEEECCEEECCCCcCCCCCChHHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999997 7999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHH
Q 047617 267 AILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEIL 318 (337)
Q Consensus 267 ~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~ 318 (337)
.++++||.+|||+|+|||++||+||++|+ ++.++ ++++||++++|++.|
T Consensus 222 ~i~~~eL~~ade~fl~ns~~gv~PV~~i~--~~~~~-~~~~~~~~~~l~~~~ 270 (270)
T cd01558 222 PFSLEELYTADEVFLTSTTAEVMPVVEID--GRPIG-DGKPGPVTKRLREAY 270 (270)
T ss_pred eCCHHHHhhCCEEEEecCcccEEEEEEEC--CeECC-CCCCCHHHHHHHHhC
Confidence 99999999999999999999999999995 66653 467899999998865
No 20
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=1.4e-55 Score=410.47 Aligned_cols=266 Identities=24% Similarity=0.334 Sum_probs=224.6
Q ss_pred eeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHH
Q 047617 33 KFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIV 111 (337)
Q Consensus 33 ~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~ll 111 (337)
+|+||++++.+++.++++|||++||||+|||||++ +|+ +|++++|++||.+||+.|+|+.+ +.+.+.+.|.+++
T Consensus 2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~---~g~--~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~ 76 (276)
T TIGR01121 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVY---NGK--LFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELV 76 (276)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CCE--EeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999998 676 57799999999999999999976 7899999999999
Q ss_pred HHcCCCCCCCCcceEEEEEEEEecCCCCCcC-CC--CCcEEEEEEeecCCc---cCCceEEEEEeeceecCCCCCCCCcc
Q 047617 112 HSNRRWVPPPGKGTMYIRPLLMGNGPDLGVA-PA--SEYTFVTYASPVGNY---HKGALNLVVEEKFRRATPGGTGGVKA 185 (337)
Q Consensus 112 ~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~-~~--~~~~~~i~~~p~~~~---~~~~~~l~~~~~~~r~~~~~~~~~Kt 185 (337)
++++. .+.+||+.+.++....+.. +. ..+.++++..|.+.. ..+|+++.+..+. |. ..+++|+
T Consensus 77 ~~~~~-------~~~~irl~~~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~-~~---~~~~~K~ 145 (276)
T TIGR01121 77 EKNNL-------NTGHVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVPRPEENLEKGVKAITVEDI-RW---LRCDIKS 145 (276)
T ss_pred HhcCC-------CceEEEEEEEcCCCCcCCCCCCCCCCcEEEEEEecccCChhHHhcCeEEEEecCC-Cc---cCCCcch
Confidence 99874 2456666654332222332 22 245666777665422 1367876654322 21 2368999
Q ss_pred ccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEE
Q 047617 186 ITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEE 265 (337)
Q Consensus 186 ~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e 265 (337)
. ||+.+++++++|+++|+||+||++ +|+|+|++++|||++++|+|+|||+++|+|+||||+.|+++|+++|++|+|
T Consensus 146 ~-nyl~~vla~~eA~~~g~de~l~~~---~g~v~E~~~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e 221 (276)
T TIGR01121 146 L-NLLGNVLAKQEAHEKGAYEAILHR---GGTVTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKE 221 (276)
T ss_pred h-hhHHHHHHHHHHHHcCCCEEEEec---CCeEEecCceeEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHCCCeEEE
Confidence 6 999999999999999999999995 589999999999999999999999999999999999999999999999999
Q ss_pred EecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhh
Q 047617 266 RAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGI 321 (337)
Q Consensus 266 ~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~ 321 (337)
+.++++||.+|||+|+|||++||+||++|+ ++.++ ++++||++++|+++|.+.
T Consensus 222 ~~i~~~el~~ade~fltns~~gi~PV~~id--~~~~~-~~~~g~~~~~L~~~~~~~ 274 (276)
T TIGR01121 222 EPFTKEELLNADEVFVSSTTAEITPVIEID--GQQIG-DGKPGPWTRQLQKAFEEK 274 (276)
T ss_pred EeCCHHHHhcCCEEEEecCcccEEEEEEEC--CEECC-CCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999995 67653 567899999999999763
No 21
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=5e-55 Score=409.50 Aligned_cols=266 Identities=20% Similarity=0.283 Sum_probs=228.7
Q ss_pred CCeeeCC-----eeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCCCHHHHHH
Q 047617 31 GQKFSQG-----TLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVN 105 (337)
Q Consensus 31 ~~~~~ng-----~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~ 105 (337)
..+|+|| ++++.+++.|+++|||++||||+||||+++ +|+ ++.+++|++||.+||+.|+|+.|+.+++.+
T Consensus 7 ~~~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~---~g~--i~~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~ 81 (292)
T PRK07849 7 VVVTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVR---DGR--PCNLEAHLERLARSAALLDLPEPDLDRWRR 81 (292)
T ss_pred EEEEECCCCccceEechHHCCccchhcchhccceEEEEEEEE---CCE--ECCHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 4799999 999999999999999999999999999997 677 466899999999999999999988889999
Q ss_pred HHHHHHHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCCCCcEEEEEEeecCCcc----CCceEEEEEeecee------c
Q 047617 106 AVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYH----KGALNLVVEEKFRR------A 175 (337)
Q Consensus 106 ~i~~ll~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~----~~~~~l~~~~~~~r------~ 175 (337)
++.++++++.. ...+.+||+++..+.... ..+.+++.+.|++... .+++++.+++ ..+ .
T Consensus 82 ~i~~~v~~~~~-----~~~~~~iRl~v~~g~~~~-----~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~ 150 (292)
T PRK07849 82 AVELAIEEWRA-----PEDEAALRLVYSRGRESG-----GAPTAWVTVSPVPERVARARREGVSVITLD-RGYPSDAAER 150 (292)
T ss_pred HHHHHHHHhcC-----CCCCeEEEEEEeCCCCCC-----CCCeEEEEEeecCccchhhccCCeEEEEEe-ccccCccccc
Confidence 99999988731 023678887776432211 1456778888875321 2678887763 222 2
Q ss_pred CCCCCCCCccccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHH
Q 047617 176 TPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEI 255 (337)
Q Consensus 176 ~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~ 255 (337)
.|..++++|++ ||+.++++.++|+++|+||+|++|. +|+|+|++++||||+++|+|+||+++.|+|+||||+.|+++
T Consensus 151 ~p~~~~~~Kt~-ny~~~i~a~~~A~~~g~dd~L~ld~--~G~v~E~s~~Nif~~~~g~l~TP~~~~giL~GItR~~vie~ 227 (292)
T PRK07849 151 APWLLAGAKTL-SYAVNMAALRYAARRGADDVIFTST--DGYVLEGPTSTVVIATDDRLLTPPPWYGILPGTTQAALFEV 227 (292)
T ss_pred Ccccccccchh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECCEEECCCCcCCCCccHHHHHHHHH
Confidence 33346789996 9999999999999999999999997 79999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhh
Q 047617 256 ARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGI 321 (337)
Q Consensus 256 a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~ 321 (337)
|++.|++|+|+.++++||.+|||+|+|||++|++||++|+ ++.+ ..||++++|+++|.+.
T Consensus 228 ~~~~g~~v~er~i~~~eL~~Adevfltns~~gi~pV~~id--~~~~----~~~~~~~~l~~~~~~~ 287 (292)
T PRK07849 228 AREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVHTLD--GRPL----PRDPLADELTELVDAA 287 (292)
T ss_pred HHHcCCceEEEECCHHHHhhCCEEEEecCcceEEEEEEEC--CEEC----CCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999994 7775 3679999999999864
No 22
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3e-54 Score=402.93 Aligned_cols=275 Identities=41% Similarity=0.617 Sum_probs=241.9
Q ss_pred CCeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHH
Q 047617 31 GQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQ 109 (337)
Q Consensus 31 ~~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~ 109 (337)
+.+|+||++++.+++.+++.|++++||+++|||+|+|+ |+ +|++++|++||.+||++|+|+.| +.+++......
T Consensus 2 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~~---g~--~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~ 76 (284)
T COG0115 2 GKIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYN---GK--LFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQL 76 (284)
T ss_pred CeEeECCEEccCcccccCcccceeccccceeEEEEEeC---Cc--ccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 35799999999999999999999999999999999994 54 79999999999999999999998 78888888888
Q ss_pred HHHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCCCCcEEEEEEeecCCccC-----CceEEEEEeeceecCCCCCCCCc
Q 047617 110 IVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHK-----GALNLVVEEKFRRATPGGTGGVK 184 (337)
Q Consensus 110 ll~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~-----~~~~l~~~~~~~r~~~~~~~~~K 184 (337)
+++.++. ...+|+|+++++.+...++.+..++.+.+.+.|+++++. +++.+.+++.+++..++....+|
T Consensus 77 ~~~~~~~------~~~~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~k 150 (284)
T COG0115 77 LLAKNNL------VPGLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRAPPGPGAAKK 150 (284)
T ss_pred HHHhhCC------CCceEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCcccccCCeEEEEeehhhccCCCcchhhh
Confidence 8877763 224899999998777777766557788999999988764 36566665445555444345677
Q ss_pred cccchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEE-CCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcE
Q 047617 185 AITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVK-ENVISTPPTNGTILPGITRKSIIEIARVLGYQV 263 (337)
Q Consensus 185 t~~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~-~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v 263 (337)
+. ||+.+++++++|+++|+||+|++|. +|+|+|++++|||+++ ||+++||+++.++||||||+.+|++|+++|+++
T Consensus 151 ~~-~y~~~~~a~~~A~~~G~~eal~~~~--~G~V~Eg~~sNvf~v~~dg~~~TP~~~~~iL~GitR~~li~la~~~G~~v 227 (284)
T COG0115 151 TG-NYLSSVLAKREAKAAGADEALLLDE--DGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTV 227 (284)
T ss_pred hc-ccHHHHHHHHHHHHCCCCEEEEecC--CCeEEEcCcceEEEEEECCEEECCCCCCCccccHHHHHHHHHHHHcCceE
Confidence 75 9999999999999999999999997 7999999999999999 889999999999999999999999999999999
Q ss_pred EEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHhhHccC
Q 047617 264 EERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGC 325 (337)
Q Consensus 264 ~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~~~~~~ 325 (337)
+|++++.+||.+|||+|+|||+++|+||.+|+ ++ . +++||+|++|+++|.+++.+.
T Consensus 228 ~E~~i~~~~l~~adevf~t~t~~~v~PV~~i~--~~-~---~~~gpit~~l~~~~~~~~~~~ 283 (284)
T COG0115 228 EERPITLEDLKQADEVFLTNTAAGVTPVGLID--GR-V---GQPGPVTKKLRELLTDIQYGE 283 (284)
T ss_pred EEeecCHHHHhhCCEEEEEccceEEEEEEEEC--Cc-c---CCCChHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999994 44 2 579999999999999998875
No 23
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=2.6e-54 Score=400.27 Aligned_cols=260 Identities=22% Similarity=0.276 Sum_probs=220.3
Q ss_pred eeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047617 33 KFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVH 112 (337)
Q Consensus 33 ~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i~~ll~ 112 (337)
+|+||++ ++.|+++|||++||||+|||+|++ +|+ +|++++|++||.+||+.|+|+.++.+.+.+.+.+++.
T Consensus 2 ~~~nG~~----~~~i~~~d~g~~~GdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~l~~~~~ 72 (268)
T PRK06092 2 FWINGQP----QESLSVSDRSTQYGDGCFTTARVR---DGQ--VSLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLAA 72 (268)
T ss_pred EEECCcC----cCccCccccccccccceeeEEEEE---CCe--eccHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Confidence 6999995 578999999999999999999987 777 5668999999999999999998866778877777763
Q ss_pred HcCCCCCCCCcceEEEEEEEEecCCCCCcCCC--CCcEEEEEEeecCCcc----CCceEEEEEeeceecCCCCCCCCccc
Q 047617 113 SNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPA--SEYTFVTYASPVGNYH----KGALNLVVEEKFRRATPGGTGGVKAI 186 (337)
Q Consensus 113 ~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~--~~~~~~i~~~p~~~~~----~~~~~l~~~~~~~r~~~~~~~~~Kt~ 186 (337)
.. .+.++|+.+..+....++.+. ..+.+++++.|++++. .+|+++.+++ .++..++.++++|+.
T Consensus 73 ~~---------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~ 142 (268)
T PRK06092 73 EL---------ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCP-TRLGRNPLLAGIKHL 142 (268)
T ss_pred hC---------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEec-cccCCCCCccCcchh
Confidence 21 245677777644333454433 3567888888876433 2688888764 444444457889996
Q ss_pred cchhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEEE
Q 047617 187 TNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEER 266 (337)
Q Consensus 187 ~~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~ 266 (337)
||+.+++++++|+++|+||+||+|. +|+|+|++++|||++++|+|+||+++.++||||||+.++++|+++|++|+|+
T Consensus 143 -ny~~~~~a~~~A~~~g~de~l~l~~--~g~v~E~s~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~~~~~g~~v~e~ 219 (268)
T PRK06092 143 -NRLEQVLIRAELEQTEADEALVLDS--EGWVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYPVVEV 219 (268)
T ss_pred -hhHHHHHHHHHHHhcCCCEEEEECC--CCCEEEccceEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999997 7999999999999999999999999989999999999999999999999999
Q ss_pred ecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHh
Q 047617 267 AILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTG 320 (337)
Q Consensus 267 ~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~ 320 (337)
.++++||.+|||+|+|||++||+||++|+ ++.+ .+||++++|+++|.+
T Consensus 220 ~i~~~dL~~adevfltns~~gi~pV~~id--~~~~----~~g~~~~~l~~~~~~ 267 (268)
T PRK06092 220 DASLEELLQADEVFICNSLMPVWPVRAIG--ETSY----SSGTLTRYLQPLCER 267 (268)
T ss_pred ECCHHHHhhCCEEEEeCCcceEEEEEEEC--CEEc----cchHHHHHHHHHHhc
Confidence 99999999999999999999999999995 7765 368999999999875
No 24
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=5.5e-54 Score=396.66 Aligned_cols=254 Identities=25% Similarity=0.314 Sum_probs=217.5
Q ss_pred eeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 047617 34 FSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHS 113 (337)
Q Consensus 34 ~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i~~ll~~ 113 (337)
|+||++ ++.|+++|+|++||||+|||||++ +|+ +|++++|++||.+||+.|+|+.|+.+++++.+.+++++
T Consensus 1 ~~nG~~----~~~i~~~d~g~~~G~gvFEt~r~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~ 71 (261)
T TIGR03461 1 WVNGVL----QTQISVSDRGLQYGDGCFTTAKVR---NGK--IELLDLHLERLQDAAARLGIPLPDWDALREEMAQLAAG 71 (261)
T ss_pred CcCCcc----cCccCcccccccccceeEEEEEEE---CCE--eccHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Confidence 889994 788999999999999999999987 777 56789999999999999999988889999999999986
Q ss_pred cCCCCCCCCcceEEEEEEEEecCCCCCcCC--CCCcEEEEEEeecCCcc----CCceEEEEEeeceecCCCCCCCCcccc
Q 047617 114 NRRWVPPPGKGTMYIRPLLMGNGPDLGVAP--ASEYTFVTYASPVGNYH----KGALNLVVEEKFRRATPGGTGGVKAIT 187 (337)
Q Consensus 114 ~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~--~~~~~~~i~~~p~~~~~----~~~~~l~~~~~~~r~~~~~~~~~Kt~~ 187 (337)
+. ++++|+.+..+....++.+ ...+.+++++.|+++++ .+|+++.+++ .++..+..++++|+.
T Consensus 72 ~~---------~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~Kt~- 140 (261)
T TIGR03461 72 YS---------LGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVSP-VRLGRNPLLAGIKHL- 140 (261)
T ss_pred CC---------CeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEec-cccCCCCCCcCcccc-
Confidence 53 4567777754322234332 23456778888776433 2688888764 444444467899997
Q ss_pred chhhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEEEe
Q 047617 188 NYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERA 267 (337)
Q Consensus 188 ~y~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~~ 267 (337)
||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||+++.++|+||||+.++++|++.|++|+|+.
T Consensus 141 ~y~~~~~a~~~A~~~g~de~llln~--~g~v~E~s~sNif~~~~~~l~TP~~~~~~L~GItR~~il~~~~~~g~~v~E~~ 218 (261)
T TIGR03461 141 NRLEQVLIKAELENSEADEALVLDT--DGNVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALGYEIEEVK 218 (261)
T ss_pred ccHHHHHHHHHhhhcCCCEEEEECC--CCCEEEeccEEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEe
Confidence 9999999999999999999999997 79999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHH
Q 047617 268 ILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLY 315 (337)
Q Consensus 268 i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~ 315 (337)
++++||.+|||+|+|||++||+||++|+ ++.+ .+||++++|+
T Consensus 219 i~~~eL~~ade~f~~ns~~gi~pV~~id--~~~~----~~~~~~~~l~ 260 (261)
T TIGR03461 219 AGLEELLSADEVFITNSLMGVVPVNAIG--ETSY----PSRTLTRLLQ 260 (261)
T ss_pred cCHHHHhhCCEEEEeCCccceEEEEEEC--CEEe----cchHHHHHhh
Confidence 9999999999999999999999999995 7775 3679999885
No 25
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=1.4e-52 Score=385.91 Aligned_cols=249 Identities=44% Similarity=0.693 Sum_probs=216.2
Q ss_pred CccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCcceEEEE
Q 047617 51 SGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSNRRWVPPPGKGTMYIR 129 (337)
Q Consensus 51 d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~ll~~~~~~~p~~~~~~~~iR 129 (337)
|||++||||+|||||++ +|+ +|++++|++||.+||+.|+|+.+ +.+++.+.+.+++++++. ++++||
T Consensus 1 drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir 68 (256)
T cd00449 1 DRGLHYGDGVFEGLRAG---KGR--LFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIR 68 (256)
T ss_pred CceeeccceEEEEEEEc---CcE--EEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEE
Confidence 79999999999999986 777 56789999999999999999965 899999999999998653 467899
Q ss_pred EEEEecCCCCCcCC--CCCcEEEEEEeecCCc---cCCceEEEEEeeceec-CCCCCCCCccccchhhhHHHHHHHHHCC
Q 047617 130 PLLMGNGPDLGVAP--ASEYTFVTYASPVGNY---HKGALNLVVEEKFRRA-TPGGTGGVKAITNYAIIYKPISEAKAKG 203 (337)
Q Consensus 130 ~~~~g~~~~~~~~~--~~~~~~~i~~~p~~~~---~~~~~~l~~~~~~~r~-~~~~~~~~Kt~~~y~~~~~a~~~A~~~g 203 (337)
+.++++....+..+ ...+.+++++.|++++ ..+|+++.+++. .|. .+..++++|++ ||+.+++++++|+++|
T Consensus 69 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~Kt~-~~~~~~~a~~~a~~~g 146 (256)
T cd00449 69 PLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPD-RRRAAPGGTGDAKTG-GNLNSVLAKQEAAEAG 146 (256)
T ss_pred EEEEecccccCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEeee-EEeCCCCCCccchhh-CCHHHHHHHHHHHHcC
Confidence 88876544455533 3467888888887643 237899988754 443 45568899997 8899999999999999
Q ss_pred CCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEEEecCHHHHhccceeeeec
Q 047617 204 FTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTG 283 (337)
Q Consensus 204 ~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltn 283 (337)
+||+||+|+ +|+|+|++++|||++++++|+||+++.|+|+||||+.++++|+++|++|+|+.++++||.+|||+|+||
T Consensus 147 ~de~llld~--~g~v~E~s~sNlf~~~~~~l~TP~~~~g~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~n 224 (256)
T cd00449 147 ADEALLLDD--NGYVTEGSASNVFIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTG 224 (256)
T ss_pred CCEEEEECC--CCcEEEcCceEEEEEECCEEEeCCCCCCcCcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEcc
Confidence 999999997 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHH
Q 047617 284 TAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEIL 318 (337)
Q Consensus 284 t~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~ 318 (337)
|++||+||++|+ ++.++ .+++||++++|+++|
T Consensus 225 s~~gv~pV~~i~--~~~~~-~~~~~~~~~~l~~~~ 256 (256)
T cd00449 225 TAAEVTPVTEID--GRGIG-DGKPGPVTRKLRELL 256 (256)
T ss_pred ccceEEEEEEEC--CeecC-CCCCCHHHHHHHHhC
Confidence 999999999995 77653 467899999999875
No 26
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=1.7e-52 Score=384.23 Aligned_cols=246 Identities=29% Similarity=0.461 Sum_probs=214.0
Q ss_pred CccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCcceEEEEE
Q 047617 51 SGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRP 130 (337)
Q Consensus 51 d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i~~ll~~~~~~~p~~~~~~~~iR~ 130 (337)
|||++||||+|||||++ +|+ +|++++|++||.+||+.|+|+.++.+++++.+.+++++++. ++.+||+
T Consensus 1 Drg~~~GdgvFEt~~~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~ 68 (249)
T cd01559 1 DRGFAYGDGVFETMRAL---DGR--LFLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRL 68 (249)
T ss_pred CCcccccceeEEEEEEE---CCE--EccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEE
Confidence 79999999999999998 777 56799999999999999999944899999999999998763 4678998
Q ss_pred EEEecCCCCCcCC--CCCcEEEEEEeecCC-ccCCceEEEEEeeceecCCCCCCCCccccchhhhHHHHHHHHHCCCCeE
Q 047617 131 LLMGNGPDLGVAP--ASEYTFVTYASPVGN-YHKGALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDV 207 (337)
Q Consensus 131 ~~~g~~~~~~~~~--~~~~~~~i~~~p~~~-~~~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~ 207 (337)
++..+....++.+ ...+.+++...|++. ...+++++.+++ ++|..+..++++|++ ||+.+++++++|+++|+||+
T Consensus 69 ~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g~de~ 146 (249)
T cd01559 69 ILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCP-VRLGEQPLLAGLKHL-NYLENVLAKREARDRGADEA 146 (249)
T ss_pred EEecCCCCCCCCCCCCCCCEEEEEeccCCHHHHhCCcEEEEcc-cccCCCCCCCCcchh-hhHHHHHHHHHHHhcCCCEE
Confidence 8875433344433 345678888887653 122789988774 666666678999996 99999999999999999999
Q ss_pred EEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccc
Q 047617 208 LFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVV 287 (337)
Q Consensus 208 Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~g 287 (337)
||+|+ +|+|+|++++|||++++|+|+||+++.|+||||||+.++++|+++|++|+|+.++++||.+|||+|+|||++|
T Consensus 147 l~l~~--~g~v~E~~~~Nif~~~~~~~~TP~~~~g~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~~g 224 (249)
T cd01559 147 LFLDT--DGRVIEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLG 224 (249)
T ss_pred EEEcC--CCCEEEecceEEEEEECCEEECCCcccCccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecCccc
Confidence 99997 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeCCeEEeeCCCccHHHHHHHHHH
Q 047617 288 VNPVNSITYQDKRTEYKRGVGTVGQKLYEIL 318 (337)
Q Consensus 288 i~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~ 318 (337)
|+||++|+ +. .+++||++++|+++|
T Consensus 225 i~pV~~id--~~----~~~~~~~~~~l~~~~ 249 (249)
T cd01559 225 VAPVTAID--DH----DGPPGPLTRALRELL 249 (249)
T ss_pred eeEEEEEC--Cc----ccCccHHHHHHHHhC
Confidence 99999995 42 347899999999876
No 27
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-52 Score=386.56 Aligned_cols=257 Identities=15% Similarity=0.136 Sum_probs=216.8
Q ss_pred CCeeeCCeeeeCCCcccCcCCccccccceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047617 31 GQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQI 110 (337)
Q Consensus 31 ~~~~~ng~~~~~~~~~i~~~d~~l~yG~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i~~l 110 (337)
..+|+||+++|.+++. ++++||||+|||||++ +|+ +|++++|++||.+||+.|++..++.+++.+.+.++
T Consensus 3 ~~~~~nG~~~~~~~a~-----~~~~~GdgvFETir~~---~g~--~~~l~~Hl~RL~~sa~~l~~~~~~~~~l~~~l~~~ 72 (266)
T PRK09266 3 PLIELNGRPATAEDLA-----ALALANYGHFTSMQVR---DGR--VRGLDLHLQRLRRASRELFGAALDDDRVRAQLRAA 72 (266)
T ss_pred cEEEECCEECCHHHhh-----hHhhccceEEEEEEEE---CCE--EcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4689999999999886 4999999999999997 777 56689999999999999866544789999999999
Q ss_pred HHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCC-CCcEEEEEEeecCCccCCceEEEEEeeceecCCCCCCCCccccch
Q 047617 111 VHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPA-SEYTFVTYASPVGNYHKGALNLVVEEKFRRATPGGTGGVKAITNY 189 (337)
Q Consensus 111 l~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~-~~~~~~i~~~p~~~~~~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y 189 (337)
+++ + ..+.+||+.+.++....+..+. ..+++++++.|.++...+++++.+++ +.|. .+++|+. ||
T Consensus 73 ~~~-~-------~~~~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~v~l~~~~-~~r~----~~~~K~~-~~ 138 (266)
T PRK09266 73 LAA-G-------PADASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGPAGPLRLQSVP-YERE----LPHIKHV-GT 138 (266)
T ss_pred Hhc-C-------CCcEEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCCCCCeEEEEEE-eccc----CCCCCCC-Cc
Confidence 843 2 1367999888754333444332 35677787777654434788887764 4453 4689997 88
Q ss_pred hhhHHHHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEEEecC
Q 047617 190 AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAIL 269 (337)
Q Consensus 190 ~~~~~a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~~i~ 269 (337)
+.+++++++|+++|+||+||+|. +|+|+|++++|||++++|+|+||+. ++||||||+.|+++|+++|++|+|+.++
T Consensus 139 l~~vla~~~a~~~g~de~l~ln~--~g~v~E~~~sNlf~v~~~~l~TP~~--~~L~GItR~~ll~~~~~~g~~v~e~~i~ 214 (266)
T PRK09266 139 FGQLHLRRLAQRAGFDDALFVDP--DGRVSEGATWNLGFWDGGAVVWPQA--PALPGVTMALLQRGLERLGIPQRTRPVT 214 (266)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcC--CCcEEEcCceEEEEEECCEEECCCC--CccchHHHHHHHHHHHHcCCeeEEEECC
Confidence 89999999999999999999997 7999999999999999999999993 7999999999999999999999999999
Q ss_pred HHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHHHh
Q 047617 270 VEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTG 320 (337)
Q Consensus 270 ~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~~~ 320 (337)
++||.+|||+|+|||++||+||++|+ ++.++ ..||++++|+++|.+
T Consensus 215 ~~eL~~adevfltnSl~gi~pV~~i~--~~~~~---~~~~~~~~l~~~~~~ 260 (266)
T PRK09266 215 LADLGRFAGAFACNAWRGQRAVSAID--DVALP---DSHALLELLRRAYEA 260 (266)
T ss_pred HHHHHHhhHhhhhcCccceEEEEEEC--CEECC---CCchHHHHHHHHHHh
Confidence 99999999999999999999999995 77652 237999999999965
No 28
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=3.5e-42 Score=311.73 Aligned_cols=224 Identities=32% Similarity=0.464 Sum_probs=172.7
Q ss_pred cChhhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEEEEecCCCCCcCCCCCcEEEEEEee
Q 047617 77 FRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASP 155 (337)
Q Consensus 77 f~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~ll~~~~~~~p~~~~~~~~iR~~~~g~~~~~~~~~~~~~~~~i~~~p 155 (337)
|++++|++||.+||+.+ +..+ +.+++.+.+.+++++++. .+..++|+++.+++...+..+............
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~ 73 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGSPPENSAPPPFSIA 73 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSSECSEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCccCcccccccccccc
Confidence 56899999999999999 5544 689999999999999872 245699999987655555444322211121111
Q ss_pred cCCccCCceEEEEEeeceecCCC-----CCCCCccccchhhhHH-HHHHHHHCCCCeEEEEecCCCCeEEecCceeEEEE
Q 047617 156 VGNYHKGALNLVVEEKFRRATPG-----GTGGVKAITNYAIIYK-PISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV 229 (337)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~r~~~~-----~~~~~Kt~~~y~~~~~-a~~~A~~~g~de~Llln~~~~g~v~E~s~sNvf~v 229 (337)
.... .+..........+..+. .++++|++ +|+.+.+ +.++|++.|+||+|++|. +|+|+|++++|||++
T Consensus 74 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~-~~~~~~~~~~~~a~~~g~de~ll~d~--~G~v~E~~~sNif~~ 148 (231)
T PF01063_consen 74 PPRR--PPPPLVGSVGVRRASPPLPRPNPLPRHKTT-NRLANVLAALRAAREKGADEALLLDE--DGNVTEGSTSNIFFV 148 (231)
T ss_dssp TCHH--HHEEEEEECSEECETTTSE-TTTSTTS-BS-HHHHHHHHHHHHHHHTTSSEEEEEET--TSBEEEESSSEEEEE
T ss_pred cccc--CCcceeeeeeEEeccccccccCCCCCeeEC-CcchhhHHHHHHHHhcCcchhheecC--CCCcCCCCCcccccc
Confidence 1111 11222211122222222 37899997 7777777 666777999999999997 899999999999999
Q ss_pred ECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccH
Q 047617 230 KENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGT 309 (337)
Q Consensus 230 ~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~ 309 (337)
++|+++|||++.|+|+||||+.++++++++|++|+|+.++++||.+|||+|+|||++||+||.+|+ ++.+ + +||
T Consensus 149 ~~~~~~TP~~~~giL~Gitr~~ll~~~~~~g~~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i~--~~~~--~--~~p 222 (231)
T PF01063_consen 149 KDGTLYTPPLDSGILPGITRQLLLELAKELGIPVEERPITLDDLQQADEVFLTNSLRGIRPVKSID--GRSF--G--PGP 222 (231)
T ss_dssp ETTEEEEESGSSSSB--HHHHHHHHHHHHTTSEEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEET--TEES--T--THH
T ss_pred cCCEEEcCChhhhhccHHHHHHHHHHHHhCCCCcEEEEeCHHHhhhhhheEEecchhhEEEEEEEC--CEEC--C--CCH
Confidence 999999999999999999999999999999999999999999999999999999999999999994 7764 2 999
Q ss_pred HHHHHHHHH
Q 047617 310 VGQKLYEIL 318 (337)
Q Consensus 310 ~~~~L~~~~ 318 (337)
+|++|+++|
T Consensus 223 ~~~~L~~~~ 231 (231)
T PF01063_consen 223 ITRRLQEAY 231 (231)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999987
No 29
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=1e-40 Score=298.36 Aligned_cols=204 Identities=17% Similarity=0.236 Sum_probs=171.4
Q ss_pred ceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEEEEecCC
Q 047617 58 QGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGP 137 (337)
Q Consensus 58 ~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i~~ll~~~~~~~p~~~~~~~~iR~~~~g~~~ 137 (337)
.++||||+++ ++|+ ++++++|++||.+||+.|+++.+ .+++.+.+.++++++. +.+++|+.+..++
T Consensus 4 ~~lfETi~~~--~~G~--~~~l~~Hl~RL~~sa~~l~~~~~-~~~l~~~l~~~~~~~~--------~~~~vrl~~~~~g- 69 (209)
T PRK07546 4 FELIETLRWE--PGAG--FPRLDRHLARLERSARALGFPCD-PAAVRAKLAEAVAGAQ--------GPLRLRLTLARDG- 69 (209)
T ss_pred ccEEEEEEEe--CCCC--cccHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhccC--------CCeEEEEEEcCCC-
Confidence 4799999985 2676 56689999999999999999986 6788899999887632 4678887765432
Q ss_pred CCCcCCCCCcEEEEEEeecCCcc-CCceEEEEEeeceecCCCCCCCCccccchhhhHHHHHHHHHCCCCeEEEEecCCCC
Q 047617 138 DLGVAPASEYTFVTYASPVGNYH-KGALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGK 216 (337)
Q Consensus 138 ~~~~~~~~~~~~~i~~~p~~~~~-~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~g 216 (337)
.+.+...|+++.. ..++++.+.+ .++..++.+.++||+ ||+.+++++++|+++|+||+||+|. +|
T Consensus 70 ----------~~~i~~~p~~~~~~~~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~de~l~l~~--~G 135 (209)
T PRK07546 70 ----------RLTVETAPLPPLPPDTVWRVAIAR-TRLDSADPLLRYKTT-RRAAYDAARAELPPAEADEVILLNE--RG 135 (209)
T ss_pred ----------CEEEEEecCCCCCCCCcEEEEEcC-cccCCCCcchhcccC-ChHHHHHHHHHHhhCCCCEEEEECC--CC
Confidence 2556777765422 2456776553 445555567899996 9999999999999999999999997 79
Q ss_pred eEEecCceeEEEEECCEEE-eCCCCCCCCCChHHHHHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEE
Q 047617 217 YVEEASTSNIFVVKENVIS-TPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSI 294 (337)
Q Consensus 217 ~v~E~s~sNvf~v~~~~l~-TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I 294 (337)
+|+|++++||||+++++|+ |||++.|+|+||||+.+++. ++++|+.++++||.+|||+|+|||++|++||..|
T Consensus 136 ~v~E~s~~Ni~~~~~~~~~~TP~~~~g~L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~gv~pV~~~ 209 (209)
T PRK07546 136 EVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLRGLIRAELI 209 (209)
T ss_pred cEEEcCceeEEEEECCEEEECCCCcCCCCccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccceeEEEEEEC
Confidence 9999999999999999999 99999999999999999994 5899999999999999999999999999999865
No 30
>PRK07101 hypothetical protein; Provisional
Probab=100.00 E-value=5.9e-32 Score=237.45 Aligned_cols=183 Identities=14% Similarity=0.166 Sum_probs=139.9
Q ss_pred ceeeeeeEEEeecCCeeeecChhhHHHHHHHHHHhcCCCC-C-CHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEEEEec
Q 047617 58 QGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSS-P-TIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGN 135 (337)
Q Consensus 58 ~gvFEt~r~~~~~~G~~~~f~l~~Hl~RL~~Sa~~l~i~~-~-~~~~l~~~i~~ll~~~~~~~p~~~~~~~~iR~~~~g~ 135 (337)
.++|||||++ +|+ ++++++|++||.+||+.+++.. | +.+++.+.+.++ . .+.+++|++. +.
T Consensus 3 ~~l~ETir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~----~-------~~~~r~rl~~-~~ 65 (187)
T PRK07101 3 FPLFETIAIE---DGE--IQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL----Q-------EGLVRCRIDY-NA 65 (187)
T ss_pred CcceEEEeee---CCe--eccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh----c-------CCCEEEEEEe-cC
Confidence 3699999986 777 5678999999999999999855 4 677777776554 1 2457888655 44
Q ss_pred CCCCCcCCCCCcEEEEEEeecCCccCCceEEEEEeeceecCCCCCCCCccccchhhhHHHHHHHHHCCCCeEEEEecCCC
Q 047617 136 GPDLGVAPASEYTFVTYASPVGNYHKGALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTG 215 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~~A~~~g~de~Llln~~~~ 215 (337)
+. .-+...|+++...+++++..++ +...++|+. ++. .+....|++.|+||+|++| +
T Consensus 66 g~-----------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Kt~-~r~--~~~~~~a~~~g~de~l~~~---~ 121 (187)
T PRK07101 66 EI-----------YQVQYFPYQRRPIRSFQPVYCD-------DIDYSLKYT-DRS--ALNELFAQKGECDEIIIIK---N 121 (187)
T ss_pred Cc-----------EEEEEEcCCCCCcCceEEEecC-------CcccccccC-CHH--HHHHHHHHhCCCCEEEEEc---C
Confidence 31 2333445433222466664332 123488997 431 2334455679999999997 5
Q ss_pred CeEEecCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccce
Q 047617 216 KYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVV 288 (337)
Q Consensus 216 g~v~E~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi 288 (337)
|+|+|++++|||++++|+|+||| .|+|+||||+.+++ .| +|+|+.++++||.+|||+|+|||++|+
T Consensus 122 G~v~E~~~sNi~~~~~~~~~TP~--~~~L~Gi~R~~ll~----~~-~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 122 GLVTDTSIGNLAFFDGKQWFTPK--KPLLKGTQRARLLD----EG-KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred CEEEEccceEEEEEECCEEEcCC--CCCccHHHHHHHHc----cC-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 99999999999999999999999 58999999999998 46 899999999999999999999999984
No 31
>PF15507 DUF4649: Domain of unknown function (DUF4649)
Probab=66.50 E-value=7.9 Score=28.36 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=37.2
Q ss_pred EEEecCHH---HHhccceeeee-cCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHH
Q 047617 264 EERAILVE---ELFDAEEVFCT-GTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEI 317 (337)
Q Consensus 264 ~e~~i~~~---eL~~adevflt-nt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~ 317 (337)
.||.++.+ |+..+.. .| .|+.--.||.++.++|+.+.|.|.-|.+.+.|.+.
T Consensus 11 ~Er~~~fe~~~ef~~s~~--~C~vtipD~~~V~svt~~G~~ldy~G~~GdLY~~L~k~ 66 (72)
T PF15507_consen 11 QERTQTFEDYNEFMRSQS--GCIVTIPDYYPVTSVTYNGQDLDYQGTYGDLYFFLMKQ 66 (72)
T ss_pred eEEEEEeCCHHHHHHHhc--cCcccCCCceEEEEEEECCEEeccccchhHHHHHHHHh
Confidence 35555444 4444422 22 46778899999999999998888899988888764
No 32
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=39.65 E-value=58 Score=25.00 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCcEE---------EEecCHHHHhccceeeeecCcc
Q 047617 251 SIIEIARVLGYQVE---------ERAILVEELFDAEEVFCTGTAV 286 (337)
Q Consensus 251 ~vl~~a~~~Gi~v~---------e~~i~~~eL~~adevfltnt~~ 286 (337)
.+-+.|+++|+++. +..++.+++..||-+++++...
T Consensus 20 ~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 20 ALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVP 64 (96)
T ss_pred HHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCC
Confidence 34467888999877 4567779999999999988764
No 33
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=39.25 E-value=27 Score=24.31 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=33.7
Q ss_pred cCceeEEEEECCEEEeCCCCCCCCCChHHHHHHHHHHHcC
Q 047617 221 ASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLG 260 (337)
Q Consensus 221 ~s~sNvf~v~~~~l~TP~l~~giL~GitR~~vl~~a~~~G 260 (337)
-.-++++++.++..+--.|.+=+|-|+--...-++|++.|
T Consensus 29 q~~~~f~ivi~~q~i~velkdivlvgvdvgqfh~wceqng 68 (68)
T PF13051_consen 29 QLESHFAIVIGEQSIDVELKDIVLVGVDVGQFHEWCEQNG 68 (68)
T ss_pred hcCCcEEEEECCeEEEEEeeeEEEEEecHHHHHHHHhhCC
Confidence 3457888888988888888899999999999999998765
No 34
>COG1935 Uncharacterized conserved protein [Function unknown]
Probab=38.55 E-value=27 Score=27.99 Aligned_cols=44 Identities=32% Similarity=0.469 Sum_probs=30.9
Q ss_pred CCCCChHHHHHHHHHHHcCCc-EEEEe----cCHHHHhccceeeeecCcc
Q 047617 242 TILPGITRKSIIEIARVLGYQ-VEERA----ILVEELFDAEEVFCTGTAV 286 (337)
Q Consensus 242 giL~GitR~~vl~~a~~~Gi~-v~e~~----i~~~eL~~adevfltnt~~ 286 (337)
..|-||+|..+-++.+. +++ ++-++ .++.-|...|-+|+|++..
T Consensus 4 ~~LtGIs~~vie~l~~~-~~rTieiRsa~N~~tv~rl~~GDlVFlT~~~~ 52 (122)
T COG1935 4 LALTGISRRVIESLLRN-PIRTIEIRSARNLLTVLRLHEGDLVFLTSTSL 52 (122)
T ss_pred eEEechhHHHHHHHHhC-CceEEEEEcccchHHhhcCCCCCEEEEehhHh
Confidence 35789999988777654 553 44443 4566677789999998764
No 35
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=37.48 E-value=59 Score=24.50 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=26.2
Q ss_pred HHHHHcCCcEE---------EEecCHHHHhccceeeeecCc
Q 047617 254 EIARVLGYQVE---------ERAILVEELFDAEEVFCTGTA 285 (337)
Q Consensus 254 ~~a~~~Gi~v~---------e~~i~~~eL~~adevfltnt~ 285 (337)
+.++++|+.+. +..++.+++..||-+++.+..
T Consensus 22 ~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 22 KAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred HHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccC
Confidence 45677898776 556888999999999998876
No 36
>PRK06683 hypothetical protein; Provisional
Probab=32.84 E-value=66 Score=24.10 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCcEEEEecCHHHHhccc
Q 047617 248 TRKSIIEIARVLGYQVEERAILVEELFDAE 277 (337)
Q Consensus 248 tR~~vl~~a~~~Gi~v~e~~i~~~eL~~ad 277 (337)
|++.+.++|+..++|+..-. +..||..|-
T Consensus 41 ~~~~i~~~~~~~~Vpv~~~~-t~~eLG~A~ 69 (82)
T PRK06683 41 LTHVIIRTALQHNIPITKVE-SVRKLGKVA 69 (82)
T ss_pred HHHHHHHHHHhcCCCEEEEC-CHHHHHHHh
Confidence 89999999999999998888 999999874
No 37
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=32.84 E-value=75 Score=24.03 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCcEE---------EEecCHHHHhccceeeeecCc
Q 047617 250 KSIIEIARVLGYQVE---------ERAILVEELFDAEEVFCTGTA 285 (337)
Q Consensus 250 ~~vl~~a~~~Gi~v~---------e~~i~~~eL~~adevfltnt~ 285 (337)
+.+-+.|++.|+.+. +..++.+++..||-+++.+..
T Consensus 4 eaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 4 EALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 345567888998776 345888999999999998875
No 38
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=32.61 E-value=49 Score=23.57 Aligned_cols=64 Identities=9% Similarity=-0.031 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHH
Q 047617 251 SIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEIL 318 (337)
Q Consensus 251 ~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~ 318 (337)
.+.-++++.|++++...+...+-....+-|.--+-.|-+||-..+ +|..+. ....+++.|.+.|
T Consensus 13 ~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l~---eS~aI~~yL~~~~ 76 (77)
T cd03057 13 APHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVLT---ESAAILQYLADLH 76 (77)
T ss_pred HHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEEE---cHHHHHHHHHHhC
Confidence 455567778998888777654432222333333456888998763 355542 4677777776554
No 39
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=32.32 E-value=1.1e+02 Score=22.97 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCC-CccHHHHHHHHHH
Q 047617 251 SIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKR-GVGTVGQKLYEIL 318 (337)
Q Consensus 251 ~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~-~~g~~~~~L~~~~ 318 (337)
-|-+.+++.|++|..=. .-+++..+|.+.+||--..++-......+.--|.-.| .+..+++.|++++
T Consensus 12 ~v~~~L~~~GyeVv~l~-~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLE-NEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred HHHHHHHHCCCEEEecC-CccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhh
Confidence 45677888998776533 3346889999999998887776654332222232122 4777777777654
No 40
>PF04322 DUF473: Protein of unknown function (DUF473); InterPro: IPR007417 This is a family of uncharacterised archaeal proteins.
Probab=31.13 E-value=35 Score=27.64 Aligned_cols=59 Identities=29% Similarity=0.376 Sum_probs=39.7
Q ss_pred CCCChHHHHHHHHHHHcCCcEEEEe----cCHHHHhccceeeeecCccc---------eEEEEEEEeCCeEE
Q 047617 243 ILPGITRKSIIEIARVLGYQVEERA----ILVEELFDAEEVFCTGTAVV---------VNPVNSITYQDKRT 301 (337)
Q Consensus 243 iL~GitR~~vl~~a~~~Gi~v~e~~----i~~~eL~~adevfltnt~~g---------i~pV~~I~~~~~~i 301 (337)
+|-||+|+.+=++.+..=-+++-++ +++..+...|-+|+|++... |.-|.+++.--+++
T Consensus 5 aLTGIs~~vi~eL~~~~~RTiEirSa~N~~~~~~~~~Gd~VFlT~~~~~Dl~~Gt~GiIa~V~~~~i~~qri 76 (119)
T PF04322_consen 5 ALTGISRRVIDELKKNHIRTIEIRSAHNVIALESLDPGDRVFLTSVSLEDLTPGTEGIIAEVKKIEISMQRI 76 (119)
T ss_pred EEeccCHHHHHHHHhCCceEEEEEcchheeeeecCCCCCEEEEecCCHHHCCCCCCeEEEEEEEEEEEEEEE
Confidence 5789999998887664322444444 56677777899999987643 56676665433443
No 41
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=31.13 E-value=72 Score=23.82 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEecCHHHHhcc
Q 047617 247 ITRKSIIEIARVLGYQVEERAILVEELFDA 276 (337)
Q Consensus 247 itR~~vl~~a~~~Gi~v~e~~i~~~eL~~a 276 (337)
-+++.+.++|++.++|+..-. +..||..|
T Consensus 40 ~~~~~i~~~c~~~~Vp~~~~~-s~~eLG~a 68 (82)
T PRK13602 40 RLTEKVEALANEKGVPVSKVD-SMKKLGKA 68 (82)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CHHHHHHH
Confidence 489999999999999998888 99999887
No 42
>PRK03972 ribosomal biogenesis protein; Validated
Probab=29.81 E-value=3.9e+02 Score=23.89 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=53.3
Q ss_pred HHHHHCCCCeEEEEecCCCCeEEecCc----------------eeEEEEECC-------------EEEeCCCCCCCCCCh
Q 047617 197 SEAKAKGFTDVLFLDAVTGKYVEEAST----------------SNIFVVKEN-------------VISTPPTNGTILPGI 247 (337)
Q Consensus 197 ~~A~~~g~de~Llln~~~~g~v~E~s~----------------sNvf~v~~~-------------~l~TP~l~~giL~Gi 247 (337)
..|.+.|+.+.|++++. +|+...-.. +||..-++= .++|-... ++.
T Consensus 43 ~~A~~~g~TdLIVV~E~-rg~P~~L~i~hLP~gP~GPTa~FkLsnV~l~~ei~~~~~~~~s~~~p~iItts~k----t~~ 117 (208)
T PRK03972 43 MEAYDRGYERLLIINVW-KGNPLKMTFIKVGPEDWGYLGYLYLHGIKLQREMGFRNLRPIREDMPLVITTAKR----VGL 117 (208)
T ss_pred HHHHHCCCCeEEEEecC-CCcCCeEEEEcCCCCCCCceEEEEEccEEEHHHcccCCCCCccccccEEEEcCCC----CCH
Confidence 46889999999999973 455332222 233333221 13332211 222
Q ss_pred -HHHHHHHHHHHcCCcEEEE-ecCHHHH-h--ccceee-eecCccceEEEEE
Q 047617 248 -TRKSIIEIARVLGYQVEER-AILVEEL-F--DAEEVF-CTGTAVVVNPVNS 293 (337)
Q Consensus 248 -tR~~vl~~a~~~Gi~v~e~-~i~~~eL-~--~adevf-ltnt~~gi~pV~~ 293 (337)
.++.-.++|+++|++..+| ..++++| . .+|.++ +.+--+|. -|.=
T Consensus 118 g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vLVV~~~~~~~-~~~~ 168 (208)
T PRK03972 118 DHMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLGVIERHPRGM-AVNF 168 (208)
T ss_pred HHHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEEEEecCCCce-EEEE
Confidence 3455667888899987776 4888999 2 346666 55556665 4443
No 43
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=27.12 E-value=1.4e+02 Score=21.85 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=38.5
Q ss_pred EEEeCCCCCC-CCCChHHH-HHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHH
Q 047617 233 VISTPPTNGT-ILPGITRK-SIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTV 310 (337)
Q Consensus 233 ~l~TP~l~~g-iL~GitR~-~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~ 310 (337)
+||+|+.++- ++++-++. .+.-+++.+|++.+-..+.. .+ + .+-.|-+|+-.+ +|+.+. ..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~kv~~~L~elglpye~~~~~~-----~~--~--~~P~GkVP~L~~--dg~vI~---eS~aI 67 (74)
T cd03079 2 ALYQPYEEEQILLPDNASCLAVQTFLKMCNLPFNVRCRAN-----AE--F--MSPSGKVPFIRV--GNQIVS---EFGPI 67 (74)
T ss_pred ccccCCccCeeecCCCCCHHHHHHHHHHcCCCcEEEecCC-----cc--c--cCCCCcccEEEE--CCEEEe---CHHHH
Confidence 4677876633 44455553 44456778899887664321 11 1 112499999766 577663 34455
Q ss_pred HHHH
Q 047617 311 GQKL 314 (337)
Q Consensus 311 ~~~L 314 (337)
...|
T Consensus 68 l~yL 71 (74)
T cd03079 68 VQFV 71 (74)
T ss_pred HHHH
Confidence 4444
No 44
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=24.73 E-value=54 Score=25.14 Aligned_cols=33 Identities=36% Similarity=0.484 Sum_probs=28.0
Q ss_pred CChHHHHHHHHHHHcCCcEEEEecCHHHHhccc
Q 047617 245 PGITRKSIIEIARVLGYQVEERAILVEELFDAE 277 (337)
Q Consensus 245 ~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~ad 277 (337)
.|=.-+.|++.|++.|+++.|.+.-.+.|.+-|
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp~Lv~~L~~le 62 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDPLLVELLLKLE 62 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCHHHHHHHHhcc
Confidence 577789999999999999999998888776643
No 45
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=24.58 E-value=1.3e+02 Score=20.95 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHH
Q 047617 251 SIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKL 314 (337)
Q Consensus 251 ~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L 314 (337)
.+.-++++.|++++...+...+=....+-|.--+-.|-+|+-.. +|..+ + ....+++.|
T Consensus 14 ~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l-~--es~aI~~yL 72 (74)
T cd03045 14 AVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFVL-W--ESHAILIYL 72 (74)
T ss_pred HHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEEE-E--cHHHHHHHH
Confidence 45556677899999888765332222223333344578899865 35554 2 355565554
No 46
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=23.65 E-value=1.1e+02 Score=21.11 Aligned_cols=60 Identities=15% Similarity=0.034 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHH
Q 047617 250 KSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEI 317 (337)
Q Consensus 250 ~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~ 317 (337)
+.+.-++++.|++.++..+.... ...+..-.| ..|-+|+-.. +|..+ + ....+.+.|.+.
T Consensus 13 ~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~-p~~~vP~l~~--~~~~l-~--es~aI~~yL~~~ 72 (73)
T cd03059 13 HRVRIVLAEKGVSVEIIDVDPDN--PPEDLAELN-PYGTVPTLVD--RDLVL-Y--ESRIIMEYLDER 72 (73)
T ss_pred HHHHHHHHHcCCccEEEEcCCCC--CCHHHHhhC-CCCCCCEEEE--CCEEE-E--cHHHHHHHHHhh
Confidence 44455567789999998887542 222222234 5688898754 45554 2 466777766554
No 47
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=23.12 E-value=1.1e+02 Score=21.39 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=15.1
Q ss_pred CChHHHHHHHHHHH---cCCcEEEEec
Q 047617 245 PGITRKSIIEIARV---LGYQVEERAI 268 (337)
Q Consensus 245 ~GitR~~vl~~a~~---~Gi~v~e~~i 268 (337)
.||||..|....++ +|+ ++.+.+
T Consensus 14 ~GiTRSvIVNALRKleSaGv-IesrSl 39 (61)
T PF08222_consen 14 VGITRSVIVNALRKLESAGV-IESRSL 39 (61)
T ss_dssp HT--HHHHHHHHHHHHHTTS-EEEEET
T ss_pred hCccHHHHHHHHHHHHhcCc-eeeccc
Confidence 48999999987776 474 666654
No 48
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=22.69 E-value=1.5e+02 Score=21.09 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHH
Q 047617 251 SIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEI 317 (337)
Q Consensus 251 ~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~ 317 (337)
.+...+.+.|++.++..+...+-. .++..-.| -.|-+||-..+.+|..+ + ....+.+.|.+.
T Consensus 15 kv~~~L~~~gi~y~~~~v~~~~~~-~~~~~~~~-p~~~vP~l~~~~~~~~l-~--es~~I~~yL~~~ 76 (77)
T cd03041 15 LVREVLTELELDVILYPCPKGSPK-RDKFLEKG-GKVQVPYLVDPNTGVQM-F--ESADIVKYLFKT 76 (77)
T ss_pred HHHHHHHHcCCcEEEEECCCChHH-HHHHHHhC-CCCcccEEEeCCCCeEE-E--cHHHHHHHHHHh
Confidence 445567778999999888644321 23333334 55889998542123333 2 466777776654
No 49
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=22.49 E-value=1.3e+02 Score=22.59 Aligned_cols=30 Identities=17% Similarity=-0.004 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHcCCcEEEEecCHHHHhccc
Q 047617 247 ITRKSIIEIARVLGYQVEERAILVEELFDAE 277 (337)
Q Consensus 247 itR~~vl~~a~~~Gi~v~e~~i~~~eL~~ad 277 (337)
=|++.+.++|+..++|+ ....+..||..|-
T Consensus 37 ~~~k~i~~~c~~~~Vpv-~~~~t~~eLG~A~ 66 (82)
T PRK13601 37 HVTKKIKELCEEKSIKI-VYIDTMKELGVMC 66 (82)
T ss_pred HHHHHHHHHHHhCCCCE-EEeCCHHHHHHHH
Confidence 58899999999999999 5777999998873
No 50
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=22.17 E-value=1.6e+02 Score=23.49 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=25.6
Q ss_pred HHHHHcCCcEE---------EEecCHHHHhccceeeeecCc
Q 047617 254 EIARVLGYQVE---------ERAILVEELFDAEEVFCTGTA 285 (337)
Q Consensus 254 ~~a~~~Gi~v~---------e~~i~~~eL~~adevfltnt~ 285 (337)
+.|++.|+.+. +..++.+++..||-+++.+..
T Consensus 27 kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~ 67 (114)
T PRK10427 27 KLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDI 67 (114)
T ss_pred HHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 45677898776 345788999999999998876
No 51
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=21.95 E-value=2.8e+02 Score=19.20 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=38.1
Q ss_pred EEeCCCCCCCCCChH--HHHHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHH
Q 047617 234 ISTPPTNGTILPGIT--RKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVG 311 (337)
Q Consensus 234 l~TP~l~~giL~Git--R~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~ 311 (337)
|++.+ ....++... -..+.-.++..|++++...+.... -+..|-+|+-..+ |..+. ....+.
T Consensus 3 L~~~~-~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~----------~~p~g~vP~l~~~--g~~l~---es~~I~ 66 (72)
T cd03054 3 LYQWG-RAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW----------RSPTGKLPFLELN--GEKIA---DSEKII 66 (72)
T ss_pred EEEeC-CCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc----------cCCCcccCEEEEC--CEEEc---CHHHHH
Confidence 44444 244444333 233445667789999988876432 2356899999873 66542 245555
Q ss_pred HHHH
Q 047617 312 QKLY 315 (337)
Q Consensus 312 ~~L~ 315 (337)
+.|.
T Consensus 67 ~yL~ 70 (72)
T cd03054 67 EYLK 70 (72)
T ss_pred HHHh
Confidence 5443
No 52
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=21.93 E-value=1.3e+02 Score=23.26 Aligned_cols=33 Identities=24% Similarity=0.064 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHHcCCcEEEEecCHHHHhccc
Q 047617 245 PGITRKSIIEIARVLGYQVEERAILVEELFDAE 277 (337)
Q Consensus 245 ~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~ad 277 (337)
+--|++.+..+|++.++|+.+-..+.+||..|-
T Consensus 43 ~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~ 75 (99)
T PRK01018 43 PKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLC 75 (99)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHh
Confidence 336899999999999999988778999998874
No 53
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.81 E-value=2.1e+02 Score=23.42 Aligned_cols=40 Identities=15% Similarity=0.355 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCcceEEEE
Q 047617 86 MQMGAERMCMSSP-TIEQFVNAVKQIVHSNRRWVPPPGKGTMYIR 129 (337)
Q Consensus 86 L~~Sa~~l~i~~~-~~~~l~~~i~~ll~~~~~~~p~~~~~~~~iR 129 (337)
|..|...|++..+ +.+++...-..|.+-|... ..|..||.
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdks----kGGSFYLQ 98 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDKS----KGGSFYLQ 98 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcc----cCcceeeh
Confidence 6789999999877 8999999999998888752 23577775
No 54
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=21.26 E-value=2.1e+02 Score=23.32 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCcEE---------EEecCHHHHhccceeeeecC
Q 047617 250 KSIIEIARVLGYQVE---------ERAILVEELFDAEEVFCTGT 284 (337)
Q Consensus 250 ~~vl~~a~~~Gi~v~---------e~~i~~~eL~~adevfltnt 284 (337)
+.+-+.|+++|+.|. |-.++.+|+.+||-+++..-
T Consensus 22 eaLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~AaD 65 (122)
T COG1445 22 EALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAAD 65 (122)
T ss_pred HHHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEec
Confidence 344457788887664 34699999999999988764
No 55
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=21.10 E-value=2.5e+02 Score=19.80 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCcEEEEecCHHHHhccceeeeecCccceEEEEEEEeCCeEEeeCCCccHHHHHHHHHH
Q 047617 249 RKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEIL 318 (337)
Q Consensus 249 R~~vl~~a~~~Gi~v~e~~i~~~eL~~adevfltnt~~gi~pV~~I~~~~~~i~~~~~~g~~~~~L~~~~ 318 (337)
...+.-.++..|++.+...+... -.+-.|-+||-.. +|+.+. ....+++.|.+.|
T Consensus 20 ~~~v~~~L~~~gi~~~~~~~~~~----------~~~p~g~vPvl~~--~g~~l~---eS~~I~~yL~~~~ 74 (75)
T cd03080 20 CLKVETFLRMAGIPYENKFGGLA----------KRSPKGKLPFIEL--NGEKIA---DSELIIDHLEEKY 74 (75)
T ss_pred HHHHHHHHHHCCCCcEEeecCcc----------cCCCCCCCCEEEE--CCEEEc---CHHHHHHHHHHHc
Confidence 34455666778998887766531 1345688999886 466652 4677777777665
No 56
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=21.02 E-value=1.3e+02 Score=23.76 Aligned_cols=32 Identities=28% Similarity=0.096 Sum_probs=28.7
Q ss_pred CChHHHHHHHHHHHcCCcEEEEecCHHHHhcc
Q 047617 245 PGITRKSIIEIARVLGYQVEERAILVEELFDA 276 (337)
Q Consensus 245 ~GitR~~vl~~a~~~Gi~v~e~~i~~~eL~~a 276 (337)
+.-|++.+.++|+..|+|+..-..+-+||..|
T Consensus 52 ~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A 83 (108)
T PTZ00106 52 PPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTA 83 (108)
T ss_pred CHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHH
Confidence 56799999999999999998877899999887
No 57
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=20.50 E-value=51 Score=30.00 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=20.2
Q ss_pred CEEEeCCCCCCCCCChH----HHHHHHHHHH
Q 047617 232 NVISTPPTNGTILPGIT----RKSIIEIARV 258 (337)
Q Consensus 232 ~~l~TP~l~~giL~Git----R~~vl~~a~~ 258 (337)
.+.+||| ..|.||+=| |..+|.+.++
T Consensus 30 ~TYitPP-G~GFlP~~TA~HHr~~il~Lv~~ 59 (336)
T KOG2708|consen 30 HTYITPP-GEGFLPRDTARHHRAWILGLVKQ 59 (336)
T ss_pred ccccCCC-CCCCCcchhHHHHHHHHHHHHHH
Confidence 4678999 999999988 5667766554
Done!