RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 047617
(337 letters)
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 525 bits (1353), Expect = 0.0
Identities = 223/339 (65%), Positives = 271/339 (79%), Gaps = 4/339 (1%)
Query: 2 VIEYANVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLI 61
V E A+++WD LGFGL PTDYMYIM C++ +FS+G L RFG E++PS+G+LNYGQGL
Sbjct: 64 VTELADIDWDNLGFGLVPTDYMYIMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLF 123
Query: 62 EGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPP 121
EGLKAYR + ILLFRPEENA+RM+ GAERMCM +PT+EQFV AVK+ V +N+RWVPPP
Sbjct: 124 EGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPP 183
Query: 122 GKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHK---GALNLVVEEKFRRATPG 178
GKG++YIRPLLMG+G LG+APA EYTF+ Y SPVGNY K +NL+VE +F RATPG
Sbjct: 184 GKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPG 243
Query: 179 GTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPP 238
GTGGVK I NYA + K S AKAKG++DVL+LD V KY+EE S+ NIF+VK+NVISTP
Sbjct: 244 GTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPA 303
Query: 239 TNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQD 298
GTILPGITRKSII++AR G+QVEER + V+EL +A+EVFCTGTAVVV+PV SITY+
Sbjct: 304 IKGTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKG 363
Query: 299 KRTEY-KRGVGTVGQKLYEILTGIQSGCIEDEMGWTVEL 336
KR Y + G GTV Q+LY +LT +Q G IED M WTVEL
Sbjct: 364 KRVSYGEGGFGTVSQQLYTVLTSLQMGLIEDNMNWTVEL 402
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 493 bits (1270), Expect = e-176
Identities = 208/336 (61%), Positives = 265/336 (78%), Gaps = 2/336 (0%)
Query: 4 EYANVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEG 63
+YANV W+ LGF L PTDYMY+ C +G+ FS+G + +G ++P +GILNYGQGL EG
Sbjct: 16 KYANVKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLFEG 75
Query: 64 LKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGK 123
LKAYRT + RI LFRP++NA+RMQ GA+R+CM+ P++EQFV AVKQ V +N++WVPPPGK
Sbjct: 76 LKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGK 135
Query: 124 GTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHK--GALNLVVEEKFRRATPGGTG 181
GT+YIRPLL+G+G LGVAPA EYTF+ YASPVGNYHK LNL V+ K RRA GGTG
Sbjct: 136 GTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKASSGLNLKVDHKHRRAHSGGTG 195
Query: 182 GVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNG 241
GVK+ TNY+ + K + EAK+ GF+DVLFLDA TGK +EE S NIF++K N++STPPT+G
Sbjct: 196 GVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTSG 255
Query: 242 TILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRT 301
TILPG+TRKSI E+AR +GYQVEER + V+EL +AEEVFCTGTAVVV V ++T+ DK+
Sbjct: 256 TILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKV 315
Query: 302 EYKRGVGTVGQKLYEILTGIQSGCIEDEMGWTVELD 337
+Y+ G + KL+ ILT IQ G +ED+ GW VE+D
Sbjct: 316 KYRTGEEALSTKLHLILTNIQMGVVEDKKGWMVEID 351
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 445 bits (1145), Expect = e-157
Identities = 210/337 (62%), Positives = 267/337 (79%), Gaps = 3/337 (0%)
Query: 4 EYANVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEG 63
YA+++WD LGFGL P DYMY+M CSK +F+QG L+ +G +++PS+G+LNYGQ + EG
Sbjct: 52 VYADLDWDNLGFGLNPADYMYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEG 111
Query: 64 LKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGK 123
KAYR N ++LLFRP+ NA+RM++GAERM M SP+++QFVNAVKQ +N+RWVPP GK
Sbjct: 112 TKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGK 171
Query: 124 GTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHK---GALNLVVEEKFRRATPGGT 180
GT+YIRPLLMG+GP LG+ PA EYTF+ YASPVGNY K ALNL VEE++ RA PGG
Sbjct: 172 GTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGA 231
Query: 181 GGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTN 240
GGVK+ITNYA + K +S AK++GF+DVL+LD+V KY+EEAS+ N+FVVK ISTP TN
Sbjct: 232 GGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATN 291
Query: 241 GTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKR 300
GTIL GITRKS++EIA GYQV E+A+ V+E+ DA+EVFCTGTAVVV PV +ITYQ+KR
Sbjct: 292 GTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKR 351
Query: 301 TEYKRGVGTVGQKLYEILTGIQSGCIEDEMGWTVELD 337
EYK G +V QKL +L GIQ+G IED GW +++
Sbjct: 352 VEYKTGDESVCQKLRSVLVGIQTGLIEDNKGWVTDIN 388
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 414 bits (1064), Expect = e-145
Identities = 205/336 (61%), Positives = 254/336 (75%), Gaps = 3/336 (0%)
Query: 4 EYANVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEG 63
EYA+V+WD LGF L TD+M+ + F QG L+R+G E+NP++GILNYGQGLIEG
Sbjct: 48 EYADVDWDKLGFSLVRTDFMFATKSCRDGNFEQGYLSRYGNIELNPAAGILNYGQGLIEG 107
Query: 64 LKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGK 123
+KAYR + RILLFRPE NAMRM++GAERMCM SP++ QF+ VKQ V +NRRWVPPPGK
Sbjct: 108 MKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGK 167
Query: 124 GTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHK---GALNLVVEEKFRRATPGGT 180
G++Y+RPLL G+G LGVA A EYTF+ + SPV NY K ALNL VEE RA GGT
Sbjct: 168 GSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGT 227
Query: 181 GGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTN 240
GGVKAI+NY + + + AK++GF+DVL+LDA TGK +EE S +NIF+VK N+I TP T+
Sbjct: 228 GGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATS 287
Query: 241 GTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKR 300
GTIL GITRKSIIEIA LGY+VEER + VEEL +AEEVFCTGTA V V SIT+++ R
Sbjct: 288 GTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTR 347
Query: 301 TEYKRGVGTVGQKLYEILTGIQSGCIEDEMGWTVEL 336
TEYK G G V Q+L IL GIQ+G I+D W +++
Sbjct: 348 TEYKVGDGIVTQQLRSILLGIQTGSIQDTKDWVLQI 383
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 398 bits (1025), Expect = e-139
Identities = 150/342 (43%), Positives = 210/342 (61%), Gaps = 12/342 (3%)
Query: 7 NVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKA 66
++W LGFG TD+M +++ G K+ L +G E++P++ +L+YGQ + EGLKA
Sbjct: 16 AIDWANLGFGYVFTDHMVVIDYKDG-KWHDARLVPYGPLELDPAATVLHYGQEIFEGLKA 74
Query: 67 YRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKG-T 125
YR ++ I+LFRP+ NA R+Q A+R+ M E F+ AVKQ+V ++R WVPP G+G +
Sbjct: 75 YRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGAS 134
Query: 126 MYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKG---ALNLVVEEKFRRATPGGTGG 182
+Y+RP ++ P LGV PA EY F ASPVG Y KG +++ V +++ RA PGGTG
Sbjct: 135 LYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGA 194
Query: 183 VKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGT 242
K NYA +EAK KG VL+LDAV Y+EE N F + ++ TPP +G+
Sbjct: 195 AKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGS 254
Query: 243 ILPGITRKSIIEIARVLGYQVEERAILVEELFDA------EEVFCTGTAVVVNPVNSITY 296
ILPGITR S++++A LG VEER + ++E E F GTA V+ P+ I Y
Sbjct: 255 ILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKY 314
Query: 297 QDKRTEYKRG-VGTVGQKLYEILTGIQSGCIEDEMGWTVELD 337
+DK G VG V QKLY+ LTGIQ G +ED GW V++D
Sbjct: 315 KDKEFVIGDGEVGPVTQKLYDELTGIQFGDVEDPHGWIVKVD 356
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 336 bits (863), Expect = e-116
Identities = 137/282 (48%), Positives = 183/282 (64%), Gaps = 6/282 (2%)
Query: 46 EMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVN 105
++P++ L+YGQ + EGLKAYRT + +I+LFRP+ENA R+ A R+ + ++E+F++
Sbjct: 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFID 60
Query: 106 AVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKGAL- 164
A+K++V + WVP G ++YIRP + G P LGV+PA EY F +ASPVG Y KG
Sbjct: 61 AIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEK 120
Query: 165 --NLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEAS 222
+ +V FRRA PGG G KA NYA EA KG+ L+LD G YV E
Sbjct: 121 GVSALVSS-FRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDGAHG-YVAEVG 178
Query: 223 TSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCT 282
T NIF VK+ + TPP +G+ILPGITR SI+E+AR LG +VEER I +EL++A+EVF T
Sbjct: 179 TMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFAT 238
Query: 283 GTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSG 324
GTA VV PV I Y+ K VG V +KLY++LT IQ G
Sbjct: 239 GTAAVVTPVGEIDYRGKEPGEGE-VGPVTKKLYDLLTDIQYG 279
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 305 bits (784), Expect = e-103
Identities = 137/313 (43%), Positives = 189/313 (60%), Gaps = 10/313 (3%)
Query: 34 FSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERM 93
+ G LT +G ++P S +L+YGQ EGLKAYR + I+LFRP+ NA R++ A R+
Sbjct: 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRL 60
Query: 94 CMSSPTIEQFVNAVKQIVHSNRRWVPPPGKG-TMYIRPLLMGNGPDLGVAPASEYTFVTY 152
M E F+ A++Q+V +N+ WVPP G G ++Y+RP ++G P+LGV PA EY F +
Sbjct: 61 LMPELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVF 120
Query: 153 ASPVGNYHKGALNLV---VEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLF 209
ASPVG Y KG L V V ++ RA PGGTG VK NYA ++A +G V++
Sbjct: 121 ASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVY 180
Query: 210 LDAVTGKYVEEASTSNIF-VVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAI 268
LD V Y+EE N F + + + TPP +G+ILPGITR S++++A+ LG +VEER I
Sbjct: 181 LDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRI 240
Query: 269 LVEELFDA----EEVFCTGTAVVVNPVNSITYQDKRTEYKRG-VGTVGQKLYEILTGIQS 323
++EL EEVF GTA V+ PV I + K + G G V + LY+ LT IQ
Sbjct: 241 DIDELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQY 300
Query: 324 GCIEDEMGWTVEL 336
G ED GW VE+
Sbjct: 301 GDFEDPYGWIVEV 313
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 240 bits (614), Expect = 2e-78
Identities = 112/271 (41%), Positives = 151/271 (55%), Gaps = 24/271 (8%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVH 112
L+YG G+ EGL+A + LFR +E+ R+ A+R+ + P E+ A+K++V
Sbjct: 4 LHYGDGVFEGLRAGK-----GRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVA 58
Query: 113 SNRRWVPPPGKGTMYIRPLLMGNGPDLGVAP--ASEYTFVTYASPVGNYHKG---ALNLV 167
+N ++YIRPLL LGVAP + E TFV +ASPVG Y KG + L+
Sbjct: 59 AN-------NGASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLI 111
Query: 168 VEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIF 227
RRA PGGTG K N + EA G + L LD YV E S SN+F
Sbjct: 112 TSPDRRRAAPGGTGDAKTGGNLNSV-LAKQEAAEAGADEALLLDD--NGYVTEGSASNVF 168
Query: 228 VVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVV 287
+VK+ + TPP +G ILPGITR S+IE+A+ LG +VEER I ++EL+ A+EVF TGTA
Sbjct: 169 IVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAE 228
Query: 288 VNPVNSITYQDKRTEYKRGVGTVGQKLYEIL 318
V PV I + G V +KL E+L
Sbjct: 229 VTPVTEIDGRGIGDGK---PGPVTRKLRELL 256
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 218 bits (558), Expect = 9e-70
Identities = 117/302 (38%), Positives = 162/302 (53%), Gaps = 25/302 (8%)
Query: 31 GQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGA 90
G+ + G L +++ L+YG G+ E L+AY + LFR +E+ R++ A
Sbjct: 2 GKIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGK-----LFRLDEHLARLKRSA 56
Query: 91 ERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFV 150
+R+ + P E+ + + Q++ + VP +YIRPL+ G G LGV A+E T +
Sbjct: 57 KRLGLPRPESEEEIELLIQLLLAKNNLVPG-----LYIRPLVRGGGGGLGVRDATEPTLI 111
Query: 151 TYASPVGNYHKG-----ALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFT 205
ASPVG Y KG + LV+ RRA P G G K NY EAKA G
Sbjct: 112 VAASPVGAYLKGGRLEKGVVLVISSPVRRA-PPGPGAAKKTGNYLSSVLAKREAKAAGAD 170
Query: 206 DVLFLDAVTGKYVEEASTSNIFVVKEN-VISTPPTNGTILPGITRKSIIEIARVLGYQVE 264
+ L LD YV E + SN+F VK + V+ TPP +G ILPGITR S++E+A+ LG VE
Sbjct: 171 EALLLD--EDGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVE 228
Query: 265 ERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSG 324
ER I +E+L A+EVF T TA V PV I + + G V +KL E+LT IQ G
Sbjct: 229 ERPITLEDLKQADEVFLTNTAAGVTPVGLIDGRVGQ------PGPVTKKLRELLTDIQYG 282
Query: 325 CI 326
I
Sbjct: 283 EI 284
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 155 bits (395), Expect = 3e-45
Identities = 99/290 (34%), Positives = 145/290 (50%), Gaps = 27/290 (9%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVH 112
L+YG G+ EG++AY T + FR +E+ R+ A+ M P + E+ + A ++ +
Sbjct: 21 LHYGTGVFEGIRAYDTDKGPAI-FRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR 79
Query: 113 SNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYT--FVTYASPVGNYHKGALNL---- 166
N + YIRPL+ DLG+ P + Y + A P G Y G L
Sbjct: 80 KN-------NLRSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYL-GEEALEKGI 131
Query: 167 -VVEEKFRRATPGGT-GGVKAITNY--AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEAS 222
+RR P KA NY +++ K SEA+ G+ + + LD YV E S
Sbjct: 132 DAKVSSWRRNAPNTIPTAAKAGGNYLNSLLAK--SEARRHGYDEAILLD--VEGYVAEGS 187
Query: 223 TSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCT 282
NIF+VK+ V+ TPP +ILPGITR ++I +A+ LG +V E+ I EEL+ A+E F T
Sbjct: 188 GENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFT 247
Query: 283 GTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGCIEDEMGW 332
GTA + P+ + D R G V +KL E + +G ED GW
Sbjct: 248 GTAAEITPIREV---DGRKIGNGRRGPVTKKLQEAFFDLVTGGTEDYWGW 294
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 155 bits (395), Expect = 4e-45
Identities = 99/289 (34%), Positives = 146/289 (50%), Gaps = 26/289 (8%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVH 112
L+YG G+ EG++AY T + +FR E+ R+ A+ + M P ++++ + A +++V
Sbjct: 30 LHYGTGVFEGIRAYDT-PKGPAIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVVR 88
Query: 113 SNRRWVPPPGKGTMYIRPLL-MGNGPDLGVAPAS-EYTFVTYASPVGNY-HKGALNLVVE 169
N YIRPL+ +G+ LGV P A P G Y + AL +
Sbjct: 89 KNN---LKSA----YIRPLVFVGDEG-LGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIR 140
Query: 170 EK---FRRATPGGT-GGVKAITNY--AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEAST 223
K + R P KA NY +I+ K +EA+ G+ + L LD V G YV E S
Sbjct: 141 VKVSSWTRHAPNSIPTRAKASGNYLNSILAK--TEARRNGYDEALLLD-VEG-YVSEGSG 196
Query: 224 SNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTG 283
NIF+V++ V+ TPP +IL GITR ++I +A+ LG +V ER I +EL+ A+EVF TG
Sbjct: 197 ENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVFFTG 256
Query: 284 TAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGCIEDEMGW 332
TA V P+ + D R G + +KL I G E W
Sbjct: 257 TAAEVTPIREV---DGRQIGNGKRGPITEKLQSAYFDIVRGRTEKYAHW 302
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 136 bits (343), Expect = 2e-38
Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 12/221 (5%)
Query: 77 FRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNG 136
F +E+ R++ A+ + +IE +++I+ P G G +R L+
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIED----LRKIIQELLEANGPAGSG--RLRILVSRGD 54
Query: 137 PDLGVAPASEYTFVTYASPVGNYHKGALNLVVEEKFRRAT---PGGTGGVKAITNYAIIY 193
G++P + + L++ K R ++ P G K +
Sbjct: 55 GGRGLSPPEGAIPIIVSLIALASSAPPR-LLITVKLRLSSYPVPRPLAGHKTTNYLDNVL 113
Query: 194 KPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSII 253
+ A+ GF D L LD G V E STSNIF+VK + TPP ILPGITR++++
Sbjct: 114 AALRAAERAGFDDALLLDE-DG-NVTEGSTSNIFIVKGGTLYTPPLESGILPGITRQALL 171
Query: 254 EIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSI 294
++A+ LG +VEER + + +L +A+E F T + V PV SI
Sbjct: 172 DLAKELGIEVEERPLTLADLQEADEAFLTNSLRGVTPVTSI 212
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 120 bits (302), Expect = 7e-32
Identities = 85/280 (30%), Positives = 126/280 (45%), Gaps = 49/280 (17%)
Query: 56 YGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSN 114
+G G+ E ++ Y + F +E+ R+ A+ + + P T E+ ++++V N
Sbjct: 23 FGDGVYEVIRVYNGK-----PFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKN 77
Query: 115 RRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKGALNLVVEEKFRR 174
G+G +YI+ + G GP P V + L L E +
Sbjct: 78 EG-----GEGDVYIQ-VTRGVGPRGHDFPKCVKPTVVIIT-------QPLPLPPAELLEK 124
Query: 175 ATPGGTGGVKAIT--------------NY--AIIYKPISEAKAKGFTDVLFLDAVTGKYV 218
GV+ IT N ++ K EAK G + + LDA V
Sbjct: 125 -------GVRVITVPDIRWLRCDIKSLNLLNNVLAK--QEAKEAGADEAILLDA--DGLV 173
Query: 219 EEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEE 278
E S+SN+F+VK V+ TPP + ILPGITR ++IE+A+ LG VEER +EEL+ A+E
Sbjct: 174 TEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADE 233
Query: 279 VFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEIL 318
VF T T V PV I D R G V ++L E
Sbjct: 234 VFLTSTTAEVMPVVEI---DGRPIGDGKPGPVTKRLREAY 270
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 114 bits (287), Expect = 1e-29
Identities = 89/274 (32%), Positives = 132/274 (48%), Gaps = 36/274 (13%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVH 112
L+Y + EG +AY +I F+ E++ R++ AE + P ++ + A K+ +
Sbjct: 32 LHYASSVFEGERAY---GGKI--FKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETLA 86
Query: 113 SNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYAS-PVGNYH------KGA-L 164
+N G Y+RP+ +GV+ + A+ +Y KG L
Sbjct: 87 AN-------GLTDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRL 139
Query: 165 NLVVEEKFRRATPGGTGGV--KAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEAS 222
++ K+RR P T KA Y I A+AKG+ D L LD G YV EA+
Sbjct: 140 DI---AKWRRPDPE-TAPSAAKAAGLYMICTISKHAAEAKGYADALMLD-YRG-YVAEAT 193
Query: 223 TSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCT 282
+NIF VK+ VI TP T L GITR+++IE+A+ G +V ER I+ EEL E F T
Sbjct: 194 GANIFFVKDGVIHTP-TPDCFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFLT 252
Query: 283 GTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYE 316
GTA V PV+ I EY+ G + + L +
Sbjct: 253 GTAAEVTPVSEI------GEYRFTPGAITRDLMD 280
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 110 bits (277), Expect = 4e-28
Identities = 95/273 (34%), Positives = 134/273 (49%), Gaps = 35/273 (12%)
Query: 56 YGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSN 114
YG G+ EG++AY N R+ FR +E+ R+ A+ + + P + E+ V + + N
Sbjct: 28 YGDGVFEGIRAY---NGRV--FRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETLRKN 82
Query: 115 RRWVPPPGKGTMYIRPLLM-GNGPDLGVAP--ASEYTFVTYASPVG-----NYHKGALNL 166
YIR ++ G G DLG+ P + T V A P+G Y KG L
Sbjct: 83 -------NLRDAYIRLVVSRGVG-DLGLDPRKCPKPTVVCIAEPIGLYPGELYEKG-LK- 132
Query: 167 VVEEKFRRATPGGTG-GVKAITNY--AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEAST 223
V+ RR P VK++ NY I+ K I EA G + + L+ G YV E +
Sbjct: 133 VITVSTRRNRPDALSPQVKSL-NYLNNILAK-I-EANLAGVDEAIMLND-EG-YVAEGTG 187
Query: 224 SNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTG 283
NIF+VK + TPPT L GITR ++IEIA+ LG V E + +L+ A+EVF TG
Sbjct: 188 DNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVREELFTLHDLYTADEVFLTG 247
Query: 284 TAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYE 316
TA V PV + D R G + +KL E
Sbjct: 248 TAAEVIPVVKV---DGRVIGDGKPGPITKKLLE 277
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 100 bits (252), Expect = 1e-24
Identities = 63/184 (34%), Positives = 89/184 (48%), Gaps = 20/184 (10%)
Query: 121 PGKGTMYIRPLLMG-NGPDLGVAPASEYT-FV--TYASPVGNYHKGALNLVVEEKFRRAT 176
+YIRP+ +G GVAP E T F +P+ +L L FRR T
Sbjct: 87 DPDTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSLTL---SPFRRPT 143
Query: 177 PGGTGGVKAITN------YAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVK 230
A T+ Y + + EA+++GF + L LD + V E +TSN+F+VK
Sbjct: 144 LE-----MAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLGN--VAETATSNVFMVK 196
Query: 231 ENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNP 290
+ V+ TP NGT L GITR+ +I + R G V E + E+ +A+EVF TG V P
Sbjct: 197 DGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVP 256
Query: 291 VNSI 294
V
Sbjct: 257 VTRF 260
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 97.0 bits (242), Expect = 1e-23
Identities = 66/243 (27%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 56 YGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNR 115
YG G+ E ++A LL + + R++ A R+ + P + + A++ ++
Sbjct: 6 YGDGVFETMRALD--GRLFLL---DAHLARLERSARRLGIPEPDLPRLRAALESLL---A 57
Query: 116 RWVPPPGKGTMYIRPLLMGNGPDLGVAPASE----YTFVTYASPVGNYHKGALNLVVEEK 171
G IR +L G AP+ P G +
Sbjct: 58 ANDIDEG----RIRLILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCP-- 111
Query: 172 FRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKE 231
R G+K NY EA+ +G + LFLD T V E + SN+F VK+
Sbjct: 112 VRLGEQPLLAGLKH-LNYLENVLAKREARDRGADEALFLD--TDGRVIEGTASNLFFVKD 168
Query: 232 NVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPV 291
+ TP + L GITR+ +IE+A GY V+ER + +E+L A+E F T + + V PV
Sbjct: 169 GELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPV 228
Query: 292 NSI 294
+I
Sbjct: 229 TAI 231
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 90.8 bits (225), Expect = 8e-21
Identities = 85/271 (31%), Positives = 124/271 (45%), Gaps = 31/271 (11%)
Query: 56 YGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSN 114
YG G+ EG+++Y +F +E+ R+ A+ + ++ P T+++ AV Q + N
Sbjct: 29 YGDGVFEGIRSYGGN-----VFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTLQKN 83
Query: 115 RRWVPPPGKGTMYIRPLLMGNGP-DLGVAPAS--EYTFVTYAS-----PVGNYHKGALNL 166
YIR L++ G DLG+ P S + + + A P Y G
Sbjct: 84 -------EYADAYIR-LIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLS-- 133
Query: 167 VVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNI 226
VV RR TP NY EA G + L L+ YV E S N+
Sbjct: 134 VVSVASRRNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLEALMLN--QQGYVCEGSGDNV 191
Query: 227 FVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAV 286
FVVK+ + TPP+ L GITR S+IE+ L EER +++ A+EVF TGTA
Sbjct: 192 FVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAA 251
Query: 287 VVNPVNSITYQDKRTEYKRGV-GTVGQKLYE 316
+ PV + D R E G G+V ++L E
Sbjct: 252 ELIPVVKV---DSR-EIGDGKPGSVTKQLTE 278
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 81.1 bits (201), Expect = 2e-17
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 199 AKAKGFTDVLFLDAVTGKYVEEASTSNIFVV-KENVISTPPTNGTILPGITRKSIIEIAR 257
AK G + +D +V E ++SN ++V K+ + T P + ILPGITR ++I++A+
Sbjct: 163 AKEAGAQEAWMVD---DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAK 219
Query: 258 VLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSI 294
LG +VEER ++E + A E F T + V PV I
Sbjct: 220 ELGLEVEERPFTLQEAYAAREAFITAASSFVFPVVQI 256
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 78.8 bits (195), Expect = 1e-16
Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 37/242 (15%)
Query: 72 ERILLFRP-----EENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTM 126
E +L+ E + R+ A + + P ++++ AV+ + W P + +
Sbjct: 43 ETLLVRDGRPCNLEAHLERLARSAALLDLPEPDLDRWRRAVELAI---EEWRAPEDEAAL 99
Query: 127 ---YIRPLLMGNGPDLGVAPASEYT-FVTYASPVGNYHKGALNLVVE----------EKF 172
Y R G T +VT SPV A V +
Sbjct: 100 RLVYSR----------GRESGGAPTAWVT-VSPVPERVARARREGVSVITLDRGYPSDAA 148
Query: 173 RRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKEN 232
RA P G K + +YA+ + A +G DV+F T YV E TS + + ++
Sbjct: 149 ERA-PWLLAGAKTL-SYAVNMAALRYAARRGADDVIFTS--TDGYVLEGPTSTVVIATDD 204
Query: 233 VISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVN 292
+ TPP ILPG T+ ++ E+AR G+ E RA+ +LF A+ V+ + + V+
Sbjct: 205 RLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVH 264
Query: 293 SI 294
++
Sbjct: 265 TL 266
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 72.8 bits (179), Expect = 1e-14
Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 33/249 (13%)
Query: 56 YGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSN 114
+G G+ E ++ Y + LF E+ R+ A ++ + P T E+ + ++V N
Sbjct: 25 FGDGVYEVIRVYNGK-----LFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELVEKN 79
Query: 115 RRWVPPPGKGTMYIRPLLMGNGPDLGVAPASE-------YTFVTYASPVGNYHKGALNLV 167
G +Y + + G P PA YT P N KG +
Sbjct: 80 NL-----NTGHVYFQ-VTRGVAPRNHQFPAGTVKPVITAYTK-EVPRPEENLEKGVKAIT 132
Query: 168 VEE-KFRRATPGGTGGVKAITN-YAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSN 225
VE+ ++ R +K++ ++ K EA KG + + G V E S+SN
Sbjct: 133 VEDIRWLRCD------IKSLNLLGNVLAK--QEAHEKGAYEAILH---RGGTVTEGSSSN 181
Query: 226 IFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTA 285
++ +K+ V+ T P N IL GITR I+ A G V+E EEL +A+EVF + T
Sbjct: 182 VYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVSSTT 241
Query: 286 VVVNPVNSI 294
+ PV I
Sbjct: 242 AEITPVIEI 250
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 68.8 bits (169), Expect = 2e-13
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 197 SEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIA 256
+E + + L LD G VE + +NIF K N + TP + + G+ R+ ++ +
Sbjct: 150 AELENSEADEALVLD-TDGNVVE-CTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALL 207
Query: 257 RVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSI 294
LGY++EE +EEL A+EVF T + + V PVN+I
Sbjct: 208 PALGYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAI 245
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 65.2 bits (160), Expect = 4e-12
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 203 GFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQ 262
+ L LD G +E +N+F K V+ TP + + G+ R+ I+E+ GY
Sbjct: 158 EADEALVLD-SEGWVIE-CCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYP 215
Query: 263 VEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEIL 318
V E +EEL A+EVF + + V PV +I T Y GT+ + L +
Sbjct: 216 VVEVDASLEELLQADEVFICNSLMPVWPVRAIG----ETSYS--SGTLTRYLQPLC 265
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 65.0 bits (159), Expect = 6e-12
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 217 YVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDA 276
YV E SN+F VK +++ TP IL GITR +I++ LG +V+E EEL A
Sbjct: 174 YVAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSA 233
Query: 277 EEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKL 314
+EVF T + + P+ I + ++ VG V ++L
Sbjct: 234 DEVFVTNSIQEIVPLTRI----EERDFPGKVGMVTKRL 267
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 58.5 bits (141), Expect = 8e-10
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 197 SEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIA 256
++A+ KG + LF V V E S SN F++K + T P N IL GI R+ ++ +A
Sbjct: 163 TKAERKGCKEALF---VRNGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLA 219
Query: 257 RVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKL 314
+ L V+E V +++ A+E F TGT + + P +T+ D VG + + L
Sbjct: 220 KTLRIPVQEELFSVRDVYQADECFFTGTTIEILP---MTHLDGTAIQDGQVGPITKML 274
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 46.9 bits (112), Expect = 6e-06
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 28/148 (18%)
Query: 166 LVVEEKFRRATPGGTGGVKAITN--------YAII----YKP----ISEAKAKGFTDVLF 209
+V+E+ + GVK +T+ +A + Y P EA+ +G ++
Sbjct: 153 VVIEDTYA---QDRPEGVKVVTSSVPIKPPQFATVKSVNYLPNALSQMEAEERGAFAGIW 209
Query: 210 LDAVTGKYVEEASTSNI-FVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQ-----V 263
LD G +V E N+ F+ + + PP + IL G T + ++E+A L V
Sbjct: 210 LDE-EG-FVAEGPNMNVAFLTNDGELVLPPFD-KILSGCTARRVLELAPRLVSPGDLRGV 266
Query: 264 EERAILVEELFDAEEVFCTGTAVVVNPV 291
++R I VEE A+E+ G+ V V P+
Sbjct: 267 KQRKISVEEAKAADEMMLIGSGVPVLPI 294
>gnl|CDD|236438 PRK09266, PRK09266, hypothetical protein; Provisional.
Length = 266
Score = 37.7 bits (88), Expect = 0.006
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 199 AKAKGFTDVLFLDAVTGKYVEEASTSNI-FVVKENVISTPPTNGTILPGITRKSIIEIAR 257
A+ GF D LF+D V E +T N+ F V+ P LPG+T +
Sbjct: 148 AQRAGFDDALFVDP--DGRVSEGATWNLGFWDGGAVV-WP--QAPALPGVTMALLQRGLE 202
Query: 258 VLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVNSI 294
LG R + + +L F V++I
Sbjct: 203 RLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAI 239
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional.
Length = 209
Score = 34.2 bits (79), Expect = 0.056
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 220 EASTSNIFV-VKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEE 278
E + +N+F+ +++TPP + +LPG+ R +++ R E + V++L A
Sbjct: 139 EGTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELLDAGR-----AREAVLTVDDLKSARA 193
Query: 279 VFC 281
++
Sbjct: 194 IWV 196
>gnl|CDD|111373 pfam02467, Whib, Transcription factor WhiB. WhiB is a putative
transcription factor in Actinobacteria, required for
differentiation and sporulation.
Length = 66
Score = 29.0 bits (65), Expect = 0.61
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 76 LFRPEENAMRMQMGAERMCMSSPTIEQ 102
LF PE R A+R+CM P +++
Sbjct: 14 LFFPERGYPRSAREAKRICMRCPVLQE 40
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit
alpha.
Length = 362
Score = 30.5 bits (69), Expect = 1.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 273 LFDAEEVFCTGTAVVVNPVNSI--TYQDKRTEYKRGVGTVGQKLYEILTGIQSGC 325
L+D +E G + ++I Y+D T RG GTV + E L G + GC
Sbjct: 64 LYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRG-GTVLEVFAE-LMGRKDGC 116
>gnl|CDD|217501 pfam03339, Pox_L3_FP4, Poxvirus L3/FP4 protein.
Length = 319
Score = 28.6 bits (64), Expect = 4.3
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 226 IFVVKENVISTPPTNGTILPGI----------------TRKSIIEIARVLGYQVEERAIL 269
IF +K+ I+TP + PG T S+ + RVL + + IL
Sbjct: 236 IFKIKKKYITTPQIHRLTEPGTLVYVLRNDMFNYGITLTDVSLNDNVRVL-FSSDGGNIL 294
Query: 270 VEELFDAEEVFCTG 283
+ F E+VF G
Sbjct: 295 EIDDFSIEDVFIAG 308
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 28.8 bits (65), Expect = 5.0
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 62 EGLKAYRTRNE---RIL-LFRPEENAMRMQMGAERM 93
+G+KA RTRNE R L R E + R MG +M
Sbjct: 272 QGIKARRTRNEGRVRALKALRRERSERREVMGTAKM 307
>gnl|CDD|179257 PRK01231, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 295
Score = 28.0 bits (63), Expect = 6.9
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 254 EIARVLG--YQVEERAILVEELFDAEEVFCTGTA---VVVNPVNSI 294
++A VL YQ EER +L E+ EV G A VV++P S
Sbjct: 111 KLAEVLDGHYQEEERFLLEAEVRRGGEVIGQGDALNDVVLHPGKST 156
>gnl|CDD|223164 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription].
Length = 808
Score = 28.0 bits (63), Expect = 9.6
Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 10/121 (8%)
Query: 166 LVVEEKFRRATPGGTGGVKAITNY-----AIIYKPISEAKAKGFTDVLFLDAVTGKYVEE 220
L + + +TP G +K I K I K + D +
Sbjct: 457 LTIVDAKLPSTPVGEIYLKDEYADDREKAEAIAKKIELTTGKVIVSTISPDLAELSIIVT 516
Query: 221 ASTSNIF---VVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVE--ERAILVEELFD 275
IF + ++ + NG ++ G+ K I+ I R G +V L+++L +
Sbjct: 517 TDGRRIFNRGLPEDKDVLVKIVNGKLIKGVIDKKIVTIYREYGPEVASKALVKLLDKLKN 576
Query: 276 A 276
Sbjct: 577 L 577
>gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 392
Score = 27.5 bits (62), Expect = 9.8
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 62 EGLKAYRTRNERILL-----FRPEENAMRMQMGAERM 93
L A+ RN R+ L P A + GA+R+
Sbjct: 61 AALAAFDCRNNRLALLALQQIEPAVEAAIARYGADRI 97
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.399
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,623,008
Number of extensions: 1735046
Number of successful extensions: 1412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1363
Number of HSP's successfully gapped: 44
Length of query: 337
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 240
Effective length of database: 6,635,264
Effective search space: 1592463360
Effective search space used: 1592463360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.2 bits)