RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 047617
(337 letters)
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 439 bits (1131), Expect = e-155
Identities = 122/346 (35%), Positives = 191/346 (55%), Gaps = 15/346 (4%)
Query: 7 NVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKA 66
GFG TD+M ++ + + + + +G +++PS+ +L+YGQ + EGLKA
Sbjct: 27 ESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKA 86
Query: 67 YRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPP-PGKGT 125
YR + I+ FRPE NA R+Q A R+ + E F+ +++Q++ + +WVPP G+ +
Sbjct: 87 YRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEES 146
Query: 126 MYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKG---ALNLVVEEKFRRATPGGTGG 182
+Y+RP ++ P LGV P++EY ++ ASP G Y KG +++ + ++ RA+PGGTG
Sbjct: 147 LYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGA 206
Query: 183 VKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV----KENVISTPP 238
K NYA ++A G V++LDA+ +YVEE N+F V + TP
Sbjct: 207 AKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPE 266
Query: 239 TNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDA------EEVFCTGTAVVVNPVN 292
+G++LPGITR S++++A G+ VEER I V+E EVF GTA V+ PV+
Sbjct: 267 LSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVS 326
Query: 293 SITYQDKRTEYKRG-VGTVGQKLYEILTGIQSGCIEDEMGWTVELD 337
+ + D G G + L + LTGIQ G D GW L+
Sbjct: 327 HVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 413 bits (1063), Expect = e-145
Identities = 107/349 (30%), Positives = 165/349 (47%), Gaps = 21/349 (6%)
Query: 6 ANVNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLK 65
+ + L FG TD+M + S + + + ++P S L+Y L EGLK
Sbjct: 40 EKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLK 99
Query: 66 AYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGT 125
A+R + +I LF+P N RM A R + E+ + ++Q+V ++ WVP +
Sbjct: 100 AFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSAS 159
Query: 126 MYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKG----ALNLVVEEKFRRATPGGTG 181
+YIRP +G P LGV ++ SPVG Y ++L K+ RA GGTG
Sbjct: 160 LYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTG 219
Query: 182 GVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKEN-----VIST 236
K NY EA G VL+L + E T N+F+ N ++T
Sbjct: 220 DCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGED-HQITEVGTMNLFLYWINEDGEEELAT 278
Query: 237 PPTNGTILPGITRKSIIEIARVLG-YQVEERAILVEELFDA------EEVFCTGTAVVVN 289
PP +G ILPG+TR+ I+++A G ++V ER + +++L A E+F +GTA VV
Sbjct: 279 PPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVC 338
Query: 290 PVNSITYQDKRTEYKRG--VGTVGQKLYEILTGIQSGCIEDEMGWTVEL 336
PV+ I Y+ + + ++ LT IQ G +E WT+ L
Sbjct: 339 PVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYG--REERDWTIVL 385
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 409 bits (1054), Expect = e-144
Identities = 105/347 (30%), Positives = 170/347 (48%), Gaps = 22/347 (6%)
Query: 8 VNWDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAY 67
+ L FG T TD+M ++ + + Q + F ++P+S L+Y L EG+KA+
Sbjct: 23 GPGEPLVFGKTFTDHMLMVEWNDK-GWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAF 81
Query: 68 RTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMY 127
+ +++++ LFRP N RM A R+C+ S + + +++++ ++ WVP ++Y
Sbjct: 82 KGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLY 141
Query: 128 IRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKG----ALNLVVEEKFRRATPGGTGGV 183
+RP+L+GN P LGV+ PVG Y G ++L+ + F RA GG G
Sbjct: 142 VRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNY 201
Query: 184 KAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKENV-----ISTPP 238
K NY EA +G VL+L + E T NIFV + + TPP
Sbjct: 202 KLGGNYGPTVLVQQEALKRGCEQVLWLYGPD-HQLTEVGTMNIFVYWTHEDGVLELVTPP 260
Query: 239 TNGTILPGITRKSIIEIARVLG-YQVEERAILVEELFDA------EEVFCTGTAVVVNPV 291
NG ILPG+ R+S++++A+ G ++V ER I +++L A EVF +GTA V PV
Sbjct: 261 LNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPV 320
Query: 292 NSITYQDKRTEYKRG--VGTVGQKLYEILTGIQSGCIEDEMGWTVEL 336
+ I Y+D+ + + + L IQ G W +
Sbjct: 321 HRILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAH--EWMFPV 365
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 179 bits (457), Expect = 2e-54
Identities = 88/290 (30%), Positives = 148/290 (51%), Gaps = 27/290 (9%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVH 112
L+YG + EG++ Y + ++FR E+ R+ A+ +I++ + A + ++
Sbjct: 30 LHYGTSVFEGIRCYDSHKG-PVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIR 88
Query: 113 SNRRWVPPPGKGTMYIRPLL-MGNGPDLGVAPASEYT--FVTYASPVGNY------HKGA 163
N + YIRPL+ +G+ +GV P + Y+ + A P G Y +G
Sbjct: 89 KN-------NLTSAYIRPLIFVGDV-GMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQG- 139
Query: 164 LNLVVEEKFRRATPGGT-GGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEAS 222
++ +V + RA P KA NY SEA+ G+ + + LD G Y+ E +
Sbjct: 140 IDAMVS-SWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV-NG-YISEGA 196
Query: 223 TSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCT 282
N+F VK+ V+ TPP + LPGITR +II++A+ LG +V E+ + E L+ A+EVF +
Sbjct: 197 GENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMS 256
Query: 283 GTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGCIEDEMGW 332
GTA + PV S+ D + G V +++ + G+ +G ED+ GW
Sbjct: 257 GTAAEITPVRSV---DGIQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGW 303
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 177 bits (452), Expect = 2e-53
Identities = 84/290 (28%), Positives = 128/290 (44%), Gaps = 28/290 (9%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVH 112
L+YG G+ EG++AY+T + +FR +E+ R+ A+ M P E A + +V
Sbjct: 52 LHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVR 111
Query: 113 SNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPA-SEYTFVTYASPVGNY------HKGALN 165
N + Y+RP++ LGV+ + A P G Y KG +
Sbjct: 112 EN-------KLESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKG-IR 163
Query: 166 LVVEEKFRRATPGGT-GGVKAITNY--AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEAS 222
+ F R + KA Y +I+ EA A G+ + L LD G YV E S
Sbjct: 164 VKTS-SFTRHHVNVSMVRAKASGWYVNSILAN--QEATADGYDEALLLDV-DG-YVSEGS 218
Query: 223 TSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCT 282
N F+V + TP L GITR ++I +A+ G +V E+ I +E++ A+E F T
Sbjct: 219 GENFFLVNRGKLYTPDLAS-CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFT 277
Query: 283 GTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGCIEDEMGW 332
GTA V P+ + D RT G + +KL + +G W
Sbjct: 278 GTAAEVTPIREL---DNRTIGGGARGPITEKLQSAFFDVVNGKSAKHADW 324
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 176 bits (449), Expect = 3e-53
Identities = 97/292 (33%), Positives = 134/292 (45%), Gaps = 32/292 (10%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVH 112
L+YG + EG++AY T +FR +E+ R A+ + M P E+ A+K++V
Sbjct: 29 LHYGTSVFEGIRAYETAKG-PAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVR 87
Query: 113 SNRRWVPPPGKGTMYIRPLL-MGNGPDLGVAPASEY--TFVTYASPVGNY------HKGA 163
N G + YIRPL MG LGV P + A G Y KG
Sbjct: 88 RN-------GYRSCYIRPLAWMGAK-ALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKG- 138
Query: 164 LNLVVEEKFRRATPGGT-GGVKAITNY--AIIYKPISEAKAKGFTDVLFLDAVTGKYVEE 220
L+ + R G K NY + + K EA A G + L LD G YV E
Sbjct: 139 ARLITS-SWARFPANVMPGKAKVGGNYVNSALAK--MEAVAAGADEALLLDE-EG-YVAE 193
Query: 221 ASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVF 280
S N+F V++ VI + L GITR S+I IA+ LGY+V+ ++L+ A+EVF
Sbjct: 194 GSGENLFFVRDGVIYALEHSV-NLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVF 252
Query: 281 CTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGCIEDEMGW 332
TGTA V PV+ I D R K G V +L E+ +G + GW
Sbjct: 253 MTGTAAEVTPVSMI---DWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGW 301
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 166 bits (424), Expect = 8e-50
Identities = 61/265 (23%), Positives = 113/265 (42%), Gaps = 33/265 (12%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVH 112
+ + E L+ Y F ++ R++ A+ + + ++F +K
Sbjct: 36 KSLQGAVYETLRTYSRA-----PFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGAD 90
Query: 113 SNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKGALNLVVEEKF 172
++ V I+ L + ++ + + + G + + +
Sbjct: 91 EFKQEV--------RIKVYLFPDSGEVLFVFS--------PLNIPDLETG-VEVKIS-NV 132
Query: 173 RRATPGGT-GGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKE 231
RR T +K I+ ++ + DV+ L G V E S SN+F+VKE
Sbjct: 133 RRIPDLSTPPALKITGRTDIV---LARREIVDCYDVILLGL-NG-QVCEGSFSNVFLVKE 187
Query: 232 NVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPV 291
+ TP + IL GITR+++I++A+ L VEER + V ELF+A+E+F T T+ V PV
Sbjct: 188 GKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLTHTSAGVVPV 247
Query: 292 NSITYQDKRTEYKRGVGTVGQKLYE 316
+ ++ + ++ G V L E
Sbjct: 248 RRL---NEHSFFEEEPGPVTATLME 269
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 164 bits (418), Expect = 4e-49
Identities = 50/253 (19%), Positives = 104/253 (41%), Gaps = 28/253 (11%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVH 112
+ G+GL E ++ ++ + R+ A ++ + + + + + Q +
Sbjct: 23 IFLGEGLFETIRVNSSK-----PSFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKIQ 77
Query: 113 SNRRWVPPPGKGTMYIRPLL-MGNGPDLGVAPASEYTFVTYAS-PVGNYHKGALNLVVEE 170
+ I+ +L G G+A + + + + + + L+
Sbjct: 78 KD-------NLYHGGIKAILSGGPAS-RGLAERGQVSQLIFQTFNYSIQKHP-VRLISI- 127
Query: 171 KFRRATPGGTGGVKAITNYA--IIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFV 228
+ R +K++ NY II + +A A G D LF + +V E + +N+F+
Sbjct: 128 NWLRDKANPLYQLKSV-NYLEAIIAQ--RQAIAVGADDALFFNT-EN-HVTETTCANLFL 182
Query: 229 VKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVV 288
++ N++ TP ILPGITR +I + V+E ++ + + DA+ VF T + +
Sbjct: 183 IENNILYTPRVEDGILPGITRARLISHCQQHKMSVQEISLTKKRIEDADAVFLTNSLQGI 242
Query: 289 NPVNSITYQDKRT 301
V S+ D
Sbjct: 243 RRVLSL---DNII 252
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 161 bits (410), Expect = 2e-47
Identities = 52/288 (18%), Positives = 95/288 (32%), Gaps = 41/288 (14%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHS 113
L G G+ E L + R + A + + P +E + A + +
Sbjct: 43 LTRGDGIFETLLIRDGH-----ACNVRRHGERFKASAALLGLPEPILEDWEKATQMGI-- 95
Query: 114 NRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKG------ALNLV 167
W P G L G+A + + G +
Sbjct: 96 -ESWYSHPNAGEASCTWTLSRGRSSTGLASGWLTITPVSSDKLAQREHGVSVMTSSRGYS 154
Query: 168 VEEKFRRATPGGTGGVKAIT--------------NYA--IIYKPISEAKAKGFTDVLFLD 211
++ G + + YA + AK+ GF DV+F D
Sbjct: 155 IDTGLPGIGKATRGELSKVERTPAPWLTVGAKTLAYAANMAAL--RYAKSNGFDDVIFTD 212
Query: 212 AVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVE 271
V E +TS + K + I TP G ILPG T+ ++ A G++ +E+ + ++
Sbjct: 213 --GD-RVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSID 269
Query: 272 ELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILT 319
+LF A+ V+ + V + D +++ ++T
Sbjct: 270 DLFGADSVWLVSSVRGPVRVTRL---DGHK---LRKPDNEKEIKALIT 311
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 151 bits (385), Expect = 2e-44
Identities = 54/251 (21%), Positives = 95/251 (37%), Gaps = 39/251 (15%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHS 113
L +G + L+A R EE+ R++ A + +S P E F+ ++ ++ +
Sbjct: 18 LYHGASVFTTLRAEGGR-----PLWLEEHLARLRRHALALGLSYPGDEAFLEDLEALLRA 72
Query: 114 NRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKGA-LNLVVEEKF 172
+ +R G + ++ A Y + P+ Y +G + L +
Sbjct: 73 FPKAP--------CLRLRFTV-GEGVRLSEARPYAPL----PLSLYREGVRVRLT---GY 116
Query: 173 RRATPGGTGGVKAITNYA--IIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVK 230
R K NY + EA+ +G + L LDA G +V + S ++ + +
Sbjct: 117 RVHPD--LARYKT-GNYLPYRLAL--EEARKEGAFEGLLLDA-FG-HVVDGSRTSPLLFR 169
Query: 231 ENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNP 290
E + L GITR+ + E AR LG +VE E L + G+ V + P
Sbjct: 170 EGTLYLLEG---GLEGITREKVAEAARGLGLRVERGLFRPEGL--RGHLLLAGSGVGLLP 224
Query: 291 VNSITYQDKRT 301
V
Sbjct: 225 VRPP---PPEL 232
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 149 bits (380), Expect = 2e-43
Identities = 48/275 (17%), Positives = 97/275 (35%), Gaps = 39/275 (14%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHS 113
+G G + + ++ L + R+Q +R+ +S Q +K +
Sbjct: 19 TQFGDGCFTTARVI---DGKVSLL--SAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAE 73
Query: 114 NRRWVPPPGKGTMYIRPLL-MGNGPDLGVAPASEY--TFVTYASPVGNY----HKGALNL 166
+ ++ ++ G+G G + + T + + + + L
Sbjct: 74 QQNG---------VLKVVISRGSGG-RGYSTLNSGPATRILSVTAYPAHYDRLRNEGITL 123
Query: 167 VVEEKFRRATPGGTGGVKAITNY--AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTS 224
+ R G+K + N ++ + S + + L LD + +V E +
Sbjct: 124 ALS-PVRLGRNPHLAGIKHL-NRLEQVLIR--SHLEQTNADEALVLD--SEGWVTECCAA 177
Query: 225 NIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGT 284
N+F K NV+ TP + + GI R+ I + YQ+ E +EE A+E+
Sbjct: 178 NLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNA 237
Query: 285 AVVVNPVNSITYQDKRTEYKRGVGTVG---QKLYE 316
+ V PV + + T+ L E
Sbjct: 238 LMPVMPVCAC---GDVS---FSSATLYEYLAPLCE 266
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 145 bits (368), Expect = 2e-41
Identities = 56/273 (20%), Positives = 99/273 (36%), Gaps = 35/273 (12%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHS 113
L YG GL E L E + R++ G R+ + + +
Sbjct: 41 LAYGDGLFETLAVRAGT-----PRLLERHLARLEEGCRRLAIP-LDTAALRQELLAFCAA 94
Query: 114 NRRWVPPPGKGTMYIRPLLM-GNGPDLGVAPA--SEYTFVTYASPVGNYHKGALN---LV 167
+ ++ G G G AP + + SP Y + +
Sbjct: 95 LGDG---------VAKLIVTRGEGL-RGYAPPAEASPRRILSGSPRPAYPERHWQQGVRL 144
Query: 168 VEEKFRRATPGGTGGVKAITNY--AIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSN 225
+ R A G+K + N ++ + +E G + L LD V V E SN
Sbjct: 145 FACRTRLAEQPLLAGLKHL-NRLEQVLAR--AEWSDAGHAEGLMLD-VHE-RVVEGVFSN 199
Query: 226 IFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTA 285
+ +V + + P + G+ R ++E A +G + R + + EL A+EVF +
Sbjct: 200 LLLVLDGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQ 259
Query: 286 VVVNPVNSITYQDKRTEYKRGVGTVGQKLYEIL 318
+ PV ++ D+ VG + +KL + L
Sbjct: 260 FGIWPVRAL---DEHV---WPVGELTRKLQDQL 286
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 140 bits (356), Expect = 6e-40
Identities = 64/282 (22%), Positives = 102/282 (36%), Gaps = 52/282 (18%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVH 112
+G G+ E +K Y +F E+ R+ AE++ ++ P T ++F + ++V
Sbjct: 24 YQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVE 78
Query: 113 SNRRWVPPPGKGTMYIRPLL-MGNGPDLGVAPASEYTFVTYASPVGNYHKGALNLVVEEK 171
N T +I + G P ++
Sbjct: 79 KN-------ELNTGHIYFQVTRGTSP-RAHQFPENTVKPVII-------------GYTKE 117
Query: 172 FRRATPGGTGGVKAIT--------------NY--AIIYKPISEAKAKGFTDVLFLDAVTG 215
R GVKA N A++ K EA KG + +
Sbjct: 118 NPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAK--QEAHEKGCYEAIL---HRN 172
Query: 216 KYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFD 275
V E S+SN+F +K+ ++ T P N IL GITR +I A + V+E E
Sbjct: 173 NTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALK 232
Query: 276 AEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEI 317
+E+F T T + PV I D + VG +KL +
Sbjct: 233 MDELFVTSTTSEITPVIEI---DGKLIRDGKVGEWTRKLQKQ 271
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 108 bits (272), Expect = 3e-28
Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 33/242 (13%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHS 113
LIE ++ R + + R+ A + + ++ + +
Sbjct: 12 DTADFELIETMRWQPGT----SFLRFDRHLARLYGSAAELGFA-CDPQRIAEVLSDALDG 66
Query: 114 NRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKGALNLVVEEKFR 173
R M R L + D A Y + L L + R
Sbjct: 67 AR--------TAMRTR-LALARNGDATA-SAQPYEPLAADKVW------ILRLA---RTR 107
Query: 174 RATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFV-VKEN 232
+ K + + SE +VL + + E + +N+F +
Sbjct: 108 LDSQNTLLRHKT-SRRQLYTHARSEYLVTQADEVLLAN--ERGEICEGTITNVFADFGDG 164
Query: 233 VISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPVN 292
V++TP + +LPG+ R +++ R EE ++L A+ +F + + P
Sbjct: 165 VLATPRLDCGLLPGVLRAELLDEGR-----AEEAIYSYDDLKSAKALFVGNSLRGLIPAK 219
Query: 293 SI 294
+
Sbjct: 220 LV 221
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 74.0 bits (182), Expect = 6e-16
Identities = 28/233 (12%), Positives = 59/233 (25%), Gaps = 51/233 (21%)
Query: 56 YGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSP-TIEQFVNAVKQIVHSN 114
+ L E + + + R + + + +
Sbjct: 3 WQFPLFETI---LIEQGQAKNI--SYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHTALF 57
Query: 115 RRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVT----YASPVGNYHKGALNLVVEE 170
+G + R + L P + + T + + K
Sbjct: 58 -----THREGLIRCRIDYNHHDYVLQCFPYQQKVYRTFKPVFCDHIDYSLK--------- 103
Query: 171 KFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVK 230
++ ++ K K D + + V + S N+ +
Sbjct: 104 ---------------FSDRTLLNN---LLKQKEECDEIMII--RQGKVTDCSIGNLIFRQ 143
Query: 231 ENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTG 283
N TP +L G R ++E ++ R I E+L EE+
Sbjct: 144 NNQWITPDKP--LLEGTQRAKLLEQ-----KKIIAREIFFEDLAQYEEIRLIN 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.011
Identities = 40/261 (15%), Positives = 80/261 (30%), Gaps = 94/261 (36%)
Query: 87 QMGAER--MCM----SSP------------TIEQFVNAVKQIVHSNRRWVPPPGKGTMYI 128
Q G++ M M +S + + ++ IV +N P T++
Sbjct: 1624 Q-GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN------PVNLTIH- 1675
Query: 129 RPLLMGNGPDLGVAPASEYTFVTYASPV-GNYHKGALNLVVEEKFRRATPGGTGGVKAIT 187
G + G Y+ + + + V G + + E T G+ + T
Sbjct: 1676 ------FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 188 NY---AI------IYKPISEAKAKGFT---------------------DVLFL-DAVT-- 214
+ A+ ++ + K+KG DV+ + V
Sbjct: 1730 QFTQPALTLMEKAAFEDL---KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Query: 215 ---GKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVE 271
G ++ A V ++ + + I PG S + A ++ +VE
Sbjct: 1787 FYRGMTMQVA------VPRDELGRSNYGMIAINPGRVAASFSQEA------LQY---VVE 1831
Query: 272 ELFDAEEVFCTGTAVVVNPVN 292
+ + T +V VN
Sbjct: 1832 RV--GKR-----TGWLVEIVN 1845
Score = 31.2 bits (70), Expect = 0.54
Identities = 54/343 (15%), Positives = 97/343 (28%), Gaps = 136/343 (39%)
Query: 73 RILLFRPEENAMRMQMGAERMCM----------SSPTIEQFVNAVKQI--------VHSN 114
++L F P E +R + + + E F +V++ V
Sbjct: 254 KLLGFTPGE--LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 115 RRW----VPP--------PGKGTMYIRPLLMGNGPDLGV-----------APASEYTFVT 151
+ +PP +G P+L + PA + ++
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVP--SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 152 YASPVGNYHKGALNLVV----------EEKFRRAT-PGGTGGVKAITNYAIIYKPISEAK 200
+ N GA NLVV R+A P G + P SE K
Sbjct: 370 ----LVN---GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI---------PFSERK 413
Query: 201 AKGFTDVLFLDAVTGKYVEEASTSNIFVVKENVISTP-------PTNGTILPGITRKSII 253
K FL +++P P + I + + ++
Sbjct: 414 LKF--SNRFL----------------------PVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 254 EIARVLGYQV----------EERAILVEELFDAEEVFCTGTAVVVNPVN-SITYQDKRT- 301
A+ + V + E + D ++ PV T Q K T
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVD---------CIIRLPVKWETTTQFKATH 500
Query: 302 --EYKRG-VGTVGQKLYEILTG-----IQSGCIE----DEMGW 332
++ G +G + G I +G ++ D+ G+
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 29.6 bits (66), Expect = 2.0
Identities = 42/259 (16%), Positives = 66/259 (25%), Gaps = 115/259 (44%)
Query: 48 NPSSGILNYGQGLIEGLKAYRTRNERILLFRPEEN--AMRMQMGAERMCMSSPTIEQFVN 105
NP + +++G G K R R EN AM + + + ++
Sbjct: 1668 NPVNLTIHFG-----GEKGKRIR----------ENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 106 AVKQIVHSNRRWVPPPG--KGTMYIRPLLM-------------GNGPD--------LGVA 142
+ G T + +P L G P LG
Sbjct: 1713 HSTSYT-----FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG-- 1765
Query: 143 PASEYT-----------------------FVTYASPVG-----NYHKGALN--------- 165
EY + A P NY A+N
Sbjct: 1766 ---EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 166 -----LVVEEKFRRATPGGTGGVKAITNY-----AIIYKPIS-EAKAKGFTDVLFLDAVT 214
VVE +R TG + I NY + + + +A LD VT
Sbjct: 1823 QEALQYVVERVGKR-----TGWLVEIVNYNVENQQYV---AAGDLRA--------LDTVT 1866
Query: 215 GKYVEEASTSNIFVVKENV 233
+ I +++
Sbjct: 1867 -NVLNFIKLQKIDIIELQK 1884
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase
homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP:
c.66.1.26
Length = 343
Score = 32.5 bits (74), Expect = 0.20
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 13/76 (17%)
Query: 195 PISEA-KAKGFTD---VLFLDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRK 250
P + + TD FL + + +++ ENV TR
Sbjct: 80 PFTRIGRQGDMTDSRTNSFLHIL--DILPRLQKLPKYILLENVKG-------FEVSSTRD 130
Query: 251 SIIEIARVLGYQVEER 266
+I+ G+Q +E
Sbjct: 131 LLIQTIENCGFQYQEF 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.24
Identities = 19/152 (12%), Positives = 45/152 (29%), Gaps = 52/152 (34%)
Query: 20 TDYMYIMN--CSKGQKFSQGTLTRFGK--------TEMNPSSGILNYGQGLIEG-----L 64
Y+ + + Q F++ ++R E+ P+ +L G G +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTWV 166
Query: 65 KAYRTRNERILLFRP-------------EENAMRMQMGAERMCM-----------SSPTI 100
+ ++ E + M +++ S I
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDHSSNI 223
Query: 101 EQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLL 132
+ +++++ + RR + K Y LL
Sbjct: 224 KLRIHSIQAEL---RRLL----KSKPYENCLL 248
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 31.1 bits (70), Expect = 0.25
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 12 GLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSS 51
+ G T D M G FSQ T++RF ++ +
Sbjct: 20 RIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 59
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 28.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 13 LGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSS 51
L GLT T M ++G +SQ ++RF K ++ P S
Sbjct: 18 LSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKS 56
>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB:
1bqp_A* 1hkd_A 1ofs_A* 1rin_A* 1lof_C* 1len_A 1lem_A
1les_A* 2lal_A 1loe_A 1loa_A* 1loc_A* 1lod_A* 1lob_A
1lof_A* 1log_A* 1lgc_A* 1lgb_A* 2b7y_A*
Length = 181
Score = 26.9 bits (59), Expect = 6.7
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 126 MYIRPLLMGNGPDLGVAPAS-EYTFVTYASPVGNYHKGALNLVVEEKFRRATPGGTGGVK 184
+Y P+ + + VA +TFV A N G + + T GG GV
Sbjct: 45 LYSSPIHIWDRETGNVANFVTSFTFVINAPNSYNVADGFTFFIAPVDTKPQTGGGYLGVF 104
Query: 185 AITNY 189
Y
Sbjct: 105 NSAEY 109
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B),
unknown function; 2.20A {Thermus thermophilus}
Length = 116
Score = 25.9 bits (56), Expect = 9.1
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 121 PGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKGALNLVVEEKFRRATPGGT 180
PG GT+Y+ P + GP L A V + P+ ++ + V+ + G
Sbjct: 16 PGLGTLYVDPSTLPEGPFLAYDRAGNLVKVVFMVPLKKLNES--HKYVDIGTKTLRALGI 73
Query: 181 GGVKAITNY 189
+ +
Sbjct: 74 TRIDHVNMI 82
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 27.2 bits (61), Expect = 9.4
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 292 NSITYQDKRT-----EYKRGVGTVGQKLYEILTGIQ 322
+ Y+D RT + ++ +G + +Y+ +GIQ
Sbjct: 98 LPVAYRDSRTNGLMAQAQQQLG--KRDIYQR-SGIQ 130
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
nucleotides, nucleo nucleoside interconversions, spine,
structural genomics; 1.80A {Bacillus anthracis} PDB:
2a1y_A*
Length = 336
Score = 26.8 bits (60), Expect = 10.0
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 300 RTEYKRGVGTVGQKLYEILTGIQSGC 325
E+K G++ L E+ +QS
Sbjct: 284 FVEHK---GSLEDTLIEMEQDLQSSI 306
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.399
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,349,733
Number of extensions: 334381
Number of successful extensions: 686
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 34
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)