RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 047617
(337 letters)
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 216 bits (551), Expect = 2e-68
Identities = 99/343 (28%), Positives = 164/343 (47%), Gaps = 20/343 (5%)
Query: 10 WDGLGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRT 69
+ L FG T TD+M ++ + + Q + F ++P+S L+Y L EG+KA++
Sbjct: 23 GEPLVFGKTFTDHMLMVEWNDK-GWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKG 81
Query: 70 RNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIR 129
+++++ LFRP N RM A R+C+ S + + +++++ ++ WVP ++Y+R
Sbjct: 82 KDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVR 141
Query: 130 PLLMGNGPDLGVAPASEYTFVTYASPVGNYHK----GALNLVVEEKFRRATPGGTGGVKA 185
P+L+GN P LGV+ PVG Y ++L+ + F RA GG G K
Sbjct: 142 PVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKL 201
Query: 186 ITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVK----ENVISTPPTNG 241
NY EA +G VL+L + E + + + TPP NG
Sbjct: 202 GGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNG 261
Query: 242 TILPGITRKSIIEIARVLG-YQVEERAILVEELFDA------EEVFCTGTAVVVNPVNSI 294
ILPG+ R+S++++A+ G ++V ER I +++L A EVF +GTA V PV+ I
Sbjct: 262 VILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRI 321
Query: 295 TYQDKRTEYKRG--VGTVGQKLYEILTGIQSGCIEDEMGWTVE 335
Y+D+ + + + L IQ G W
Sbjct: 322 LYKDRNLHIPTMENGPELILRFQKELKEIQYG--IRAHEWMFP 362
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 168 bits (427), Expect = 8e-51
Identities = 85/308 (27%), Positives = 145/308 (47%), Gaps = 19/308 (6%)
Query: 37 GTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMS 96
G + R+ +++ S L+YG + EG++ Y + ++ FR E+ R+ A+
Sbjct: 9 GEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRFP 67
Query: 97 SPTIEQFVNAVKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTF--VTYAS 154
+ R + + YIRPL+ +GV P + Y+ + A
Sbjct: 68 VSQSIDELMEA------CRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAF 121
Query: 155 PVGNY-----HKGALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLF 209
P G Y + ++ +V R A KA NY SEA+ G+ + +
Sbjct: 122 PWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIA 181
Query: 210 LDAVTGKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAIL 269
LD Y+ E + N+F VK+ V+ TPP + LPGITR +II++A+ LG +V E+ +
Sbjct: 182 LD--VNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLS 239
Query: 270 VEELFDAEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYEILTGIQSGCIEDE 329
E L+ A+EVF +GTA + PV S+ D + G V +++ + G+ +G ED+
Sbjct: 240 RESLYLADEVFMSGTAAEITPVRSV---DGIQVGEGRCGPVTKRIQQAFFGLFTGETEDK 296
Query: 330 MGWTVELD 337
GW +++
Sbjct: 297 WGWLDQVN 304
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 108 bits (269), Expect = 5e-28
Identities = 57/281 (20%), Positives = 105/281 (37%), Gaps = 18/281 (6%)
Query: 37 GTLTRFGKTEMNPSSGILNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMS 96
+ + + +++ +G G+ E +K Y +F E+ R+ AE++ ++
Sbjct: 7 DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRIT 61
Query: 97 SPTIEQFVNA-VKQIVHSNRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASP 155
P + + + ++V N G +Y + + + + +
Sbjct: 62 IPYTKDKFHQLLHELVEKNELN-----TGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTK 116
Query: 156 VGNYHKGALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTG 215
L V+ F +K++ N EA KG + +
Sbjct: 117 ENPRPLENLEKGVKATFVEDIRWLRCDIKSL-NLLGAVLAKQEAHEKGCYEAILHR---N 172
Query: 216 KYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFD 275
V E S+SN+F +K+ ++ T P N IL GITR +I A + V+E E
Sbjct: 173 NTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALK 232
Query: 276 AEEVFCTGTAVVVNPVNSITYQDKRTEYKRGVGTVGQKLYE 316
+E+F T T + PV I D + VG +KL +
Sbjct: 233 MDELFVTSTTSEITPVIEI---DGKLIRDGKVGEWTRKLQK 270
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 88.9 bits (219), Expect = 4e-21
Identities = 41/267 (15%), Positives = 81/267 (30%), Gaps = 22/267 (8%)
Query: 54 LNYGQGLIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHS 113
+G G + + + + R+Q +R+ + + Q+
Sbjct: 19 TQFGDGCFTTARVIDGK-----VSLLSAHIQRLQDACQRLMI-------SCDFWPQLEQE 66
Query: 114 NRRWVPPPGKGTMYIRPLLMGNGPDLGVAPASEYTFVTYASPVGNYHKGALNLVVEEK-- 171
+ G + + G + T + + ++ N +
Sbjct: 67 MKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALS 126
Query: 172 FRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVVKE 231
R N S + + L LD + +V E +N+F K
Sbjct: 127 PVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLD--SEGWVTECCAANLFWRKG 184
Query: 232 NVISTPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTAVVVNPV 291
NV+ TP + + GI R+ I + YQ+ E +EE A+E+ + V PV
Sbjct: 185 NVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPV 244
Query: 292 NSITYQDKRTEYKRGVGTVGQKLYEIL 318
+ T+ + L +
Sbjct: 245 CAC---GDV---SFSSATLYEYLAPLC 265
>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 165
Score = 30.6 bits (69), Expect = 0.14
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 137 PDLGVAPASEYTFVTYASPVGNYHKGALNLVVEEKFRRATPGGTGGVKAITNYAIIYKP 195
P+ G Y +L L++++ R GV + NY ++YKP
Sbjct: 109 PNNTGNRNRPNDMNKPRPLWGPYFGISLQLIIDD---RIFRNDFNGVISGFNYNMVYKP 164
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 75
Score = 26.3 bits (58), Expect = 1.2
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 13 LGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSS 51
+ G T D M G FSQ T++RF ++ +
Sbjct: 21 IKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 59
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 72
Score = 25.9 bits (57), Expect = 1.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 13 LGFGLTPTDYMYIMNCSKGQKFSQGTLTRFGKTEMNPSS 51
+ G T T+ + G +FSQ T+ RF +++ +
Sbjct: 17 IKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKN 55
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 150
Score = 27.0 bits (59), Expect = 2.3
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 22/132 (16%)
Query: 179 GTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGK---YVEEASTSNIFVVKENVIS 235
G+G + + I+ K + + V+ D V + S +N+ +S
Sbjct: 10 GSGMIGGVMATLIVQKNLGD--------VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS 61
Query: 236 TPPTNGTILPGITRKSIIEIARVLGYQVEERAILVEELFDAEEVFCTGTA---------- 285
T + + G +E + + + G
Sbjct: 62 GSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFI 121
Query: 286 -VVVNPVNSITY 296
VV NPV+ +
Sbjct: 122 IVVTNPVDVMVQ 133
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA
{Staphylococcus aureus [TaxId: 1280]}
Length = 136
Score = 26.9 bits (59), Expect = 2.4
Identities = 5/55 (9%), Positives = 20/55 (36%)
Query: 73 RILLFRPEENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMY 127
+L +E+ + ++ + + + T+ + ++Q+ R +
Sbjct: 38 LVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFI 92
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii
[TaxId: 5811]}
Length = 154
Score = 26.2 bits (57), Expect = 3.6
Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 23/142 (16%)
Query: 170 EKFRRATPGGTGGVKAITNYAIIYKPISEAKAKGFTDVLFLDAVTGKYVEEASTSNIFVV 229
++ ++ G+G + Y + +++ V+ D V G +A +
Sbjct: 5 QRRKKVAMIGSGMIGGTMGYLCALRELAD--------VVLYDVVKGMPEGKALDLSHVTS 56
Query: 230 KENVISTPPTNGTILPGITRKSIIEIA----RVLGYQVEERAILVEELFDAEEVFCTGTA 285
+ + + +T + + +V G E + F+++ + G
Sbjct: 57 VVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQN 116
Query: 286 -----------VVVNPVNSITY 296
VV NP++ +
Sbjct: 117 IKKYCPKTFIIVVTNPLDCMVK 138
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal
domain {Ureaplasma urealyticum [TaxId: 2130]}
Length = 139
Score = 25.8 bits (56), Expect = 5.2
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 60 LIEGLKAYRTRNERILLFRPEENAMRMQMGAERMCMSSPTIE 101
LI L + + L+F+P+ + ++ R S P++E
Sbjct: 19 LIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVE 60
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 26.7 bits (58), Expect = 5.7
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 215 GKYVEEASTSNIFVVKENVISTPPTNGTILPGITRKSIIEIARVLGYQVEE-RAILVEEL 273
++V E N V++ P + T I S I+I VLG +E RA L +E+
Sbjct: 1301 PEWVLETDGVN----LSEVMTVPGIDPT---RIYTNSFIDIMEVLG--IEAGRAALYKEV 1351
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 25.9 bits (56), Expect = 8.5
Identities = 9/125 (7%), Positives = 23/125 (18%), Gaps = 11/125 (8%)
Query: 81 ENAMRMQMGAERMCMSSPTIEQFVNAVKQIVHSNRRWVPPPGKGTMY----IRPLLMGNG 136
+ I Q + + I + + NG
Sbjct: 196 PVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVRDWLVCLAKQKNG 255
Query: 137 PDLGVAPASEYTFVTYASPVGNYHKGALNLVVEEKFRRATPGGTGGVKAITNYAIIYKPI 196
+ + V E F+ + ++ + +P+
Sbjct: 256 -------ILAQKVESKINTDVQLDSQEKIGVKGELFQEDDHEESHSDFPYGSFPYVARPV 308
Query: 197 SEAKA 201
Sbjct: 309 HWQPG 313
>d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium
botulinum, serotype A [TaxId: 1491]}
Length = 417
Score = 26.0 bits (57), Expect = 8.8
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 133 MGNGPDLGVAPASEYTFVTYASPVGNYHKGALNLVV 168
G + + P G+Y LNLV+
Sbjct: 116 WGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVI 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.399
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,282,996
Number of extensions: 60402
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 26
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)