Query 047620
Match_columns 125
No_of_seqs 155 out of 1262
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 12:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.7 2.4E-17 5.1E-22 111.9 7.9 61 1-61 39-99 (100)
2 PF06005 DUF904: Protein of un 96.4 0.058 1.3E-06 34.6 8.5 51 8-63 1-51 (72)
3 COG3074 Uncharacterized protei 94.5 0.77 1.7E-05 29.5 8.5 51 8-63 1-51 (79)
4 PRK15422 septal ring assembly 94.2 0.86 1.9E-05 29.8 8.4 43 8-55 1-43 (79)
5 smart00338 BRLZ basic region l 89.3 3.5 7.5E-05 25.2 7.0 40 22-65 15-54 (65)
6 PRK13169 DNA replication intia 88.7 4.5 9.8E-05 28.0 7.7 48 10-62 7-54 (110)
7 PF06156 DUF972: Protein of un 88.5 5.2 0.00011 27.4 7.9 48 10-62 7-54 (107)
8 PF06698 DUF1192: Protein of u 86.8 1.4 3.1E-05 27.2 3.8 29 1-29 14-42 (59)
9 PF07716 bZIP_2: Basic region 86.7 4.8 0.0001 23.8 6.6 39 21-63 13-51 (54)
10 PF00170 bZIP_1: bZIP transcri 86.3 5.5 0.00012 24.2 7.1 39 22-64 15-53 (64)
11 KOG4797 Transcriptional regula 86.1 4.3 9.4E-05 28.2 6.3 45 15-59 45-89 (123)
12 cd07429 Cby_like Chibby, a nuc 86.0 1.6 3.5E-05 30.1 4.2 26 38-63 73-98 (108)
13 PF10504 DUF2452: Protein of u 85.8 6.2 0.00013 29.0 7.4 44 9-52 28-74 (159)
14 PF01166 TSC22: TSC-22/dip/bun 85.1 2.5 5.4E-05 26.1 4.2 26 33-58 17-42 (59)
15 KOG0014 MADS box transcription 82.4 0.17 3.7E-06 37.1 -2.0 40 1-40 137-177 (195)
16 PF06156 DUF972: Protein of un 80.2 15 0.00032 25.2 7.1 42 22-64 8-49 (107)
17 COG4467 Regulator of replicati 75.2 19 0.00041 25.0 6.4 39 10-60 7-45 (114)
18 PRK10884 SH3 domain-containing 68.4 50 0.0011 25.1 8.3 24 39-62 127-150 (206)
19 KOG4797 Transcriptional regula 68.2 11 0.00024 26.2 4.0 44 15-59 49-96 (123)
20 PF05529 Bap31: B-cell recepto 67.7 46 0.001 24.4 8.1 53 10-62 124-186 (192)
21 smart00340 HALZ homeobox assoc 65.1 17 0.00036 21.0 3.7 25 40-64 8-32 (44)
22 KOG3119 Basic region leucine z 64.6 25 0.00053 27.7 6.0 41 21-65 203-243 (269)
23 PRK13169 DNA replication intia 63.7 46 0.00099 22.9 7.1 42 22-64 8-49 (110)
24 PF14645 Chibby: Chibby family 61.5 15 0.00033 25.4 3.8 27 37-63 71-97 (116)
25 KOG0709 CREB/ATF family transc 60.8 15 0.00032 31.5 4.3 24 7-30 233-256 (472)
26 PRK00888 ftsB cell division pr 58.5 40 0.00086 22.8 5.4 33 32-64 29-61 (105)
27 KOG0837 Transcriptional activa 57.8 54 0.0012 26.2 6.6 52 8-63 199-253 (279)
28 PF06005 DUF904: Protein of un 57.4 47 0.001 21.1 6.7 38 29-66 10-47 (72)
29 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.2 63 0.0014 22.4 8.1 29 33-61 101-129 (132)
30 PF03980 Nnf1: Nnf1 ; InterPr 57.0 50 0.0011 22.0 5.7 37 27-63 70-106 (109)
31 TIGR02894 DNA_bind_RsfA transc 56.6 78 0.0017 23.4 8.4 59 6-64 78-138 (161)
32 COG1382 GimC Prefoldin, chaper 56.5 67 0.0014 22.5 6.6 40 21-61 69-108 (119)
33 PF15243 ANAPC15: Anaphase-pro 56.0 16 0.00035 24.5 3.0 23 11-33 28-50 (92)
34 KOG4005 Transcription factor X 54.7 58 0.0012 25.8 6.3 49 4-57 60-110 (292)
35 PF02151 UVR: UvrB/uvrC motif; 54.6 33 0.00072 18.5 4.1 33 12-44 3-35 (36)
36 PF04880 NUDE_C: NUDE protein, 54.2 37 0.00079 25.1 5.0 43 13-60 2-47 (166)
37 COG0165 ArgH Argininosuccinate 53.7 30 0.00065 29.6 5.0 40 24-63 104-143 (459)
38 smart00787 Spc7 Spc7 kinetocho 53.1 1.2E+02 0.0026 24.5 8.2 60 4-63 197-258 (312)
39 PF12537 DUF3735: Protein of u 52.2 30 0.00065 21.7 3.7 25 10-34 47-71 (72)
40 PF01093 Clusterin: Clusterin; 52.2 70 0.0015 27.2 6.9 29 3-31 1-29 (436)
41 PF11365 DUF3166: Protein of u 51.7 43 0.00093 22.6 4.6 31 32-62 10-40 (96)
42 PRK13729 conjugal transfer pil 51.0 70 0.0015 27.6 6.8 30 33-62 93-122 (475)
43 PF04849 HAP1_N: HAP1 N-termin 50.8 26 0.00056 28.4 4.0 54 11-64 97-187 (306)
44 KOG0930 Guanine nucleotide exc 49.2 38 0.00083 27.6 4.7 40 6-54 9-48 (395)
45 PLN02372 violaxanthin de-epoxi 49.1 1.4E+02 0.003 25.5 8.1 40 10-51 378-417 (455)
46 PF10226 DUF2216: Uncharacteri 49.0 46 0.001 25.3 4.8 32 29-60 47-78 (195)
47 TIGR02338 gimC_beta prefoldin, 48.8 80 0.0017 21.2 6.3 44 16-60 61-104 (110)
48 smart00030 CLb CLUSTERIN Beta 47.5 1.2E+02 0.0026 23.3 6.9 29 3-31 7-35 (206)
49 PF04977 DivIC: Septum formati 47.5 64 0.0014 19.7 5.2 29 35-63 22-50 (80)
50 KOG1962 B-cell receptor-associ 46.3 1.2E+02 0.0026 23.4 6.8 7 13-19 160-166 (216)
51 PF06785 UPF0242: Uncharacteri 46.2 1E+02 0.0023 25.6 6.8 44 18-62 130-173 (401)
52 TIGR02449 conserved hypothetic 45.6 75 0.0016 19.9 7.9 46 12-62 1-46 (65)
53 PF09798 LCD1: DNA damage chec 45.3 1.4E+02 0.003 26.8 7.9 53 11-63 4-59 (654)
54 PF11629 Mst1_SARAH: C termina 43.9 40 0.00088 20.0 3.1 25 5-29 5-33 (49)
55 PF08317 Spc7: Spc7 kinetochor 43.7 1.7E+02 0.0037 23.4 8.6 60 4-63 202-263 (325)
56 PF08781 DP: Transcription fac 42.2 1.3E+02 0.0028 21.7 7.6 45 11-57 1-45 (142)
57 PRK09343 prefoldin subunit bet 42.0 1.1E+02 0.0025 21.0 6.6 42 19-61 68-109 (121)
58 KOG2417 Predicted G-protein co 41.9 2.1E+02 0.0047 24.1 8.5 31 9-39 184-214 (462)
59 TIGR02209 ftsL_broad cell divi 41.7 87 0.0019 19.6 5.1 32 33-64 27-58 (85)
60 PF15058 Speriolin_N: Sperioli 40.9 67 0.0014 24.5 4.6 32 32-64 14-45 (200)
61 PF04999 FtsL: Cell division p 40.8 93 0.002 20.1 4.9 33 32-64 37-69 (97)
62 smart00338 BRLZ basic region l 40.6 82 0.0018 18.9 5.0 27 33-59 36-62 (65)
63 COG4026 Uncharacterized protei 40.5 1.8E+02 0.004 22.9 8.8 58 2-62 97-160 (290)
64 PF08687 ASD2: Apx/Shroom doma 40.2 97 0.0021 24.6 5.7 44 17-64 77-120 (264)
65 COG2433 Uncharacterized conser 39.8 2.4E+02 0.0051 25.4 8.3 53 11-63 450-507 (652)
66 PF12548 DUF3740: Sulfatase pr 38.8 54 0.0012 23.6 3.8 26 34-59 110-135 (145)
67 PHA01750 hypothetical protein 38.5 1E+02 0.0022 19.5 7.0 43 17-59 29-71 (75)
68 PF10018 Med4: Vitamin-D-recep 37.9 1.6E+02 0.0035 21.6 8.5 52 10-63 4-55 (188)
69 PF15254 CCDC14: Coiled-coil d 36.2 1.9E+02 0.0041 26.7 7.3 43 15-62 438-480 (861)
70 TIGR00012 L29 ribosomal protei 36.0 76 0.0016 18.8 3.5 27 4-30 1-27 (55)
71 PF10234 Cluap1: Clusterin-ass 35.9 1.6E+02 0.0035 23.4 6.3 21 11-31 158-178 (267)
72 PRK11637 AmiB activator; Provi 35.0 2.6E+02 0.0056 23.1 8.5 11 12-22 48-58 (428)
73 PF14775 NYD-SP28_assoc: Sperm 34.2 1.1E+02 0.0024 18.6 5.2 21 41-61 37-57 (60)
74 cd00632 Prefoldin_beta Prefold 33.9 1.4E+02 0.0031 19.7 6.7 45 17-62 58-102 (105)
75 PRK13923 putative spore coat p 33.0 2E+02 0.0044 21.3 6.1 25 37-61 111-135 (170)
76 cd00890 Prefoldin Prefoldin is 32.8 1.5E+02 0.0033 19.7 5.8 44 17-61 82-125 (129)
77 KOG3584 cAMP response element 32.3 1.2E+02 0.0027 24.7 5.1 45 14-63 294-338 (348)
78 PF09755 DUF2046: Uncharacteri 31.2 2E+02 0.0043 23.5 6.2 41 18-59 23-63 (310)
79 TIGR01950 SoxR redox-sensitive 29.3 1.8E+02 0.0039 20.5 5.2 54 7-60 57-110 (142)
80 PF07558 Shugoshin_N: Shugoshi 29.0 78 0.0017 18.2 2.7 29 32-60 16-44 (46)
81 cd01109 HTH_YyaN Helix-Turn-He 28.9 1.8E+02 0.0039 19.3 6.3 26 33-58 82-107 (113)
82 PF12329 TMF_DNA_bd: TATA elem 28.6 1.6E+02 0.0034 18.6 5.4 35 29-63 25-59 (74)
83 PRK03947 prefoldin subunit alp 28.5 1.9E+02 0.0041 19.9 5.2 45 17-62 89-133 (140)
84 PRK09413 IS2 repressor TnpA; R 28.5 1.9E+02 0.0041 19.5 6.9 26 35-60 76-101 (121)
85 KOG0804 Cytoplasmic Zn-finger 28.2 2.7E+02 0.0059 24.1 6.7 37 23-59 375-411 (493)
86 PF02183 HALZ: Homeobox associ 28.0 1.3E+02 0.0027 17.3 5.6 33 31-63 6-38 (45)
87 PF09789 DUF2353: Uncharacteri 27.8 2.5E+02 0.0053 23.0 6.2 41 22-63 72-112 (319)
88 COG2433 Uncharacterized conser 27.7 2.3E+02 0.005 25.4 6.4 24 10-33 421-444 (652)
89 PF01763 Herpes_UL6: Herpesvir 27.6 2.2E+02 0.0048 25.1 6.3 38 27-64 360-397 (557)
90 PF10224 DUF2205: Predicted co 27.6 1.8E+02 0.0039 18.9 6.7 28 35-62 35-62 (80)
91 PF01517 HDV_ag: Hepatitis del 27.5 2.4E+02 0.0052 21.0 5.6 44 16-61 13-56 (194)
92 KOG4571 Activating transcripti 27.4 3.2E+02 0.0068 22.2 6.7 39 22-64 237-275 (294)
93 PF13270 DUF4061: Domain of un 26.9 1.9E+02 0.0042 19.1 5.1 53 10-63 1-55 (90)
94 PF08946 Osmo_CC: Osmosensory 26.5 1.4E+02 0.0031 17.4 3.9 23 30-52 19-41 (46)
95 PRK15067 ethanolamine ammonia 26.0 39 0.00085 28.8 1.4 21 91-111 147-167 (461)
96 PF15619 Lebercilin: Ciliary p 25.9 2.3E+02 0.0049 21.3 5.4 36 24-59 6-41 (194)
97 TIGR00293 prefoldin, archaeal 25.7 1.8E+02 0.004 19.5 4.6 41 17-58 81-121 (126)
98 cd04787 HTH_HMRTR_unk Helix-Tu 25.5 2.3E+02 0.005 19.5 6.1 53 7-60 57-109 (133)
99 PF14915 CCDC144C: CCDC144C pr 25.3 3.7E+02 0.0081 21.9 7.2 51 14-64 231-291 (305)
100 COG5420 Uncharacterized conser 25.2 1.3E+02 0.0029 18.9 3.4 29 33-61 2-30 (71)
101 cd04769 HTH_MerR2 Helix-Turn-H 25.2 2.2E+02 0.0047 19.1 5.7 27 33-59 82-108 (116)
102 PRK00306 50S ribosomal protein 24.8 1.2E+02 0.0026 18.5 3.2 29 3-31 4-32 (66)
103 PF07798 DUF1640: Protein of u 24.6 2.8E+02 0.006 20.1 8.1 48 9-56 45-92 (177)
104 PF03250 Tropomodulin: Tropomo 24.5 50 0.0011 24.0 1.6 18 5-22 21-38 (147)
105 PRK11637 AmiB activator; Provi 24.2 4.1E+02 0.0089 21.9 8.7 21 40-60 99-119 (428)
106 PF00831 Ribosomal_L29: Riboso 23.8 61 0.0013 19.4 1.6 27 5-31 4-30 (58)
107 PF09803 DUF2346: Uncharacteri 23.5 2E+02 0.0044 18.5 4.2 21 20-40 54-74 (80)
108 cd00584 Prefoldin_alpha Prefol 23.5 2.4E+02 0.0052 19.0 5.1 39 17-56 82-120 (129)
109 COG5570 Uncharacterized small 22.8 1.9E+02 0.0041 17.5 3.8 11 15-25 16-26 (57)
110 KOG1853 LIS1-interacting prote 22.6 2.3E+02 0.0049 22.9 5.0 20 15-34 91-110 (333)
111 PF13805 Pil1: Eisosome compon 22.5 1.9E+02 0.0041 23.1 4.6 26 19-45 135-160 (271)
112 PF12718 Tropomyosin_1: Tropom 22.4 2.9E+02 0.0063 19.5 7.4 51 13-63 82-134 (143)
113 PF04728 LPP: Lipoprotein leuc 22.3 2E+02 0.0042 17.5 5.8 35 30-64 3-37 (56)
114 PF06937 EURL: EURL protein; 22.0 1.9E+02 0.0041 23.3 4.4 27 3-29 214-240 (285)
115 PF15619 Lebercilin: Ciliary p 21.7 3.5E+02 0.0076 20.2 8.1 12 49-60 176-187 (194)
116 KOG4343 bZIP transcription fac 21.4 3.1E+02 0.0068 24.4 5.9 39 26-64 295-336 (655)
117 cd04790 HTH_Cfa-like_unk Helix 21.1 3.3E+02 0.0072 19.7 5.7 47 7-60 58-104 (172)
118 PF07407 Seadorna_VP6: Seadorn 21.0 3.6E+02 0.0078 22.5 5.9 34 4-49 25-58 (420)
119 PF09278 MerR-DNA-bind: MerR, 20.6 1.9E+02 0.0042 16.8 5.1 11 7-17 14-24 (65)
120 TIGR01069 mutS2 MutS2 family p 20.5 6.6E+02 0.014 22.9 8.3 24 12-35 540-563 (771)
121 cd01282 HTH_MerR-like_sg3 Heli 20.5 2.7E+02 0.0059 18.5 5.2 24 33-56 84-107 (112)
122 PF09755 DUF2046: Uncharacteri 20.4 4.8E+02 0.01 21.3 7.7 20 41-60 182-201 (310)
123 PF09514 SSXRD: SSXRD motif; 20.3 14 0.0003 20.3 -1.6 21 20-40 7-27 (34)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.72 E-value=2.4e-17 Score=111.90 Aligned_cols=61 Identities=49% Similarity=0.748 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 1 MGEELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 1 ~GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
+|+||++||++||..||++|+.||.+||+||+++|.++|+.+++|++.+.++|..|+.+++
T Consensus 39 ~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 39 MGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred ccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5999999999999999999999999999999999999999999999999999999998875
No 2
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.39 E-value=0.058 Score=34.61 Aligned_cols=51 Identities=29% Similarity=0.458 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 8 LNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 8 Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
++++-|..||..+..|+..|.. +..+++.|+.+...|.++|..|..+....
T Consensus 1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5789999999999999999955 55566788888777777777776665543
No 3
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.48 E-value=0.77 Score=29.47 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 8 LNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 8 Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+|++=|..||..+..|+..| .++.-+|+.||.|...|..+-..+.....+.
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 57888999999999999998 6777788999988887777666555554443
No 4
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.20 E-value=0.86 Score=29.76 Aligned_cols=43 Identities=28% Similarity=0.458 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHH
Q 047620 8 LNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLE 55 (125)
Q Consensus 8 Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~ 55 (125)
+|++=|.+||..+..|+..| .++.-+|+.+|.|-..|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999 56667778888887777776554
No 5
>smart00338 BRLZ basic region leucin zipper.
Probab=89.27 E-value=3.5 Score=25.19 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620 22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ 65 (125)
Q Consensus 22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~ 65 (125)
.|..+-|.||...+ ..|..++..|..+|..|..++.....
T Consensus 15 ~aA~~~R~rKk~~~----~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 15 EAARRSRERKKAEI----EELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888887766 78999999999999999999887653
No 6
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=88.70 E-value=4.5 Score=27.95 Aligned_cols=48 Identities=29% Similarity=0.362 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 10 VKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 10 ~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
++-|.+||+++..-+..|..-|.++. .+-..-..|.-||..|+..+..
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~-----el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLA-----ELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899998888877766665443 3334444566666667666664
No 7
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=88.50 E-value=5.2 Score=27.43 Aligned_cols=48 Identities=29% Similarity=0.317 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 10 VKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 10 ~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
++.|..||++|..-+..|..-|.++. .+-..-..|.-||..|+..+..
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~-----~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQ-----ELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888777666655544332 3333333445555555555544
No 8
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=86.82 E-value=1.4 Score=27.20 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=20.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047620 1 MGEELSGLNVKDLQNLENQLEMSLKGVRL 29 (125)
Q Consensus 1 ~GedL~~Ls~~eL~~LE~~Le~~l~~VR~ 29 (125)
+|+||+.||+.||..==..|+.=+.++|.
T Consensus 14 ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 14 IGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999997655555555555543
No 9
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=86.66 E-value=4.8 Score=23.80 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 21 EMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 21 e~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
-.|..+-|.||...+ ..+..++..|..+|..|..++...
T Consensus 13 r~AA~r~R~rkk~~~----~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 13 REAARRSRQRKKQRE----EELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788876655 788888999999999998887654
No 10
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=86.34 E-value=5.5 Score=24.23 Aligned_cols=39 Identities=31% Similarity=0.404 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
.|-.+.|.||...+ ..|..++..|..+|..|...+....
T Consensus 15 ~AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 15 EAARRSRQRKKQYI----EELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888887776 7888999999999999988876654
No 11
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=86.09 E-value=4.3 Score=28.18 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHH
Q 047620 15 NLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKK 59 (125)
Q Consensus 15 ~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~ 59 (125)
.+.+.+|.|+.-|.+.=+=-..++++.||.+++.|.+.|..|..+
T Consensus 45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777754333333566777777777777766666554
No 12
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=86.01 E-value=1.6 Score=30.13 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 38 EIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 38 ~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
++..+|||...|+|||+.|+.|++..
T Consensus 73 e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999998654
No 13
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=85.81 E-value=6.2 Score=29.04 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHH
Q 047620 9 NVKDLQNLENQLEMSLKGVRLK---KDQVLTDEIKELNRKGNLLHQE 52 (125)
Q Consensus 9 s~~eL~~LE~~Le~~l~~VR~r---K~~l~~~~i~~lkkk~~~l~ee 52 (125)
+..||..|=++++.|..-||.+ |..+|.+||..|++.-+.+.++
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~ 74 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEE 74 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999986 7778888888888776555443
No 14
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=85.07 E-value=2.5 Score=26.08 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHH
Q 047620 33 QVLTDEIKELNRKGNLLHQENLELHK 58 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L~~ 58 (125)
+++.++|..|..+...|+.||..|+.
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666666643
No 15
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=82.45 E-value=0.17 Score=37.14 Aligned_cols=40 Identities=40% Similarity=0.533 Sum_probs=35.9
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 1 MGEELSGLNV-KDLQNLENQLEMSLKGVRLKKDQVLTDEIK 40 (125)
Q Consensus 1 ~GedL~~Ls~-~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~ 40 (125)
+|+++.++++ .+|..+|.+++.++..+|..+...+..++.
T Consensus 137 ~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (195)
T KOG0014|consen 137 TGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNF 177 (195)
T ss_pred hccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhh
Confidence 3789999999 999999999999999999999988876665
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=80.21 E-value=15 Score=25.16 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
.++..+ +.+...+..+|..||+.+..+.+||..|+.+.+...
T Consensus 8 ~~l~~l-e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 8 DRLDQL-EQQLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 345567789999999999999999999998876554
No 17
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=75.20 E-value=19 Score=24.99 Aligned_cols=39 Identities=28% Similarity=0.315 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 10 VKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 10 ~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
|+.+..||++|-.-+..| ..+|+....+.+||..|+.+.
T Consensus 7 Fd~v~~le~~l~~l~~el------------~~lK~~l~~lvEEN~~L~lEN 45 (114)
T COG4467 7 FDQVDNLEEQLGVLLAEL------------GGLKQHLGSLVEENTALRLEN 45 (114)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhhHHHHhhH
Confidence 566788888887666555 555555556666666555443
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.35 E-value=50 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=12.3
Q ss_pred HHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 39 IKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 39 i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
+....+.+..|.++|..|..++..
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444456666666555543
No 19
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=68.21 E-value=11 Score=26.22 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=33.4
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHH
Q 047620 15 NLENQLEMSL----KGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKK 59 (125)
Q Consensus 15 ~LE~~Le~~l----~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~ 59 (125)
.+|+.|+-.- --||+. .+++.++|..|..+...|++||..|+.-
T Consensus 49 KIeQAMDLVKtHLmfAVREE-Ve~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 49 KIEQAMDLVKTHLMFAVREE-VEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566665433 346663 5789999999999999999999888654
No 20
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.69 E-value=46 Score=24.42 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 10 VKDLQNLENQLEMSLKGVRLK----------KDQVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 10 ~~eL~~LE~~Le~~l~~VR~r----------K~~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
+.+|..+|..++.+-+...+. +.....++|+.++++....+.+...|..+...
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777787777776665422 33455677777777776666666666665543
No 21
>smart00340 HALZ homeobox associated leucin zipper.
Probab=65.11 E-value=17 Score=21.05 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.5
Q ss_pred HHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 40 KELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 40 ~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
+.||+--..|.++|+.|..++++..
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888899999999999988764
No 22
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=64.62 E-value=25 Score=27.74 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620 21 EMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ 65 (125)
Q Consensus 21 e~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~ 65 (125)
-.|+++=|.+..... +.++.|+..|..||..|+.++.+...
T Consensus 203 N~A~~kSR~~~k~~~----~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKE----DEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred hHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444 77889999999999999999988764
No 23
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=63.68 E-value=46 Score=22.94 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
.++..+ +.....+..++..||+.+..+.+||..|+.+-+...
T Consensus 8 d~l~~l-e~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr 49 (110)
T PRK13169 8 DALDDL-EQNLGVLLKELGALKKQLAELLEENTALRLENDKLR 49 (110)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 344566788999999999999999999988765543
No 24
>PF14645 Chibby: Chibby family
Probab=61.53 E-value=15 Score=25.45 Aligned_cols=27 Identities=30% Similarity=0.462 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 37 DEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 37 ~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
.....++++.+.|++||+.|+.+++..
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888999999998887543
No 25
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=60.85 E-value=15 Score=31.47 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 047620 7 GLNVKDLQNLENQLEMSLKGVRLK 30 (125)
Q Consensus 7 ~Ls~~eL~~LE~~Le~~l~~VR~r 30 (125)
+.++.+..-|=+.=|..|++||.|
T Consensus 233 G~slPs~lPLTKaEEriLKrvRRK 256 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRRK 256 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHHH
Confidence 455566666667778888888754
No 26
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.52 E-value=40 Score=22.80 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 32 DQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 32 ~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
..-+..++..++++...++.+|..|..++....
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556667788888888888888888877654
No 27
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=57.85 E-value=54 Score=26.19 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=37.1
Q ss_pred CCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 8 LNVKDLQNLEN---QLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 8 Ls~~eL~~LE~---~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+...|+..||+ .=..|..+-|.||.+- |..|++|+..+.-.|..|...+...
T Consensus 199 ~e~qe~~kleRkrlrnreaa~Kcr~rkLdr----isrLEdkv~~lk~~n~~L~~~l~~l 253 (279)
T KOG0837|consen 199 MEDQEKIKLERKRLRNREAASKCRKRKLDR----ISRLEDKVKTLKIYNRDLASELSKL 253 (279)
T ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 44577888887 2344666777777554 4899999999888888877666544
No 28
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.44 E-value=47 Score=21.07 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhHH
Q 047620 29 LKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQE 66 (125)
Q Consensus 29 ~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~~ 66 (125)
..|.+-..+.|..|+.++..|.++|..|..........
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677778889999999999999999888766555433
No 29
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.22 E-value=63 Score=22.44 Aligned_cols=29 Identities=28% Similarity=0.443 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 33 QVLTDEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
..+..+|..++++...|...|+.|...|.
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777777777777776654
No 30
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=57.05 E-value=50 Score=22.01 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 27 VRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 27 VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
||+.=......+++.|+.+...++.+|..|...+...
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555567777899999999999999999888654
No 31
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=56.56 E-value=78 Score=23.35 Aligned_cols=59 Identities=15% Similarity=0.291 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 6 SGLNVKDLQNLENQLEMSLKGVRLK--KDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 6 ~~Ls~~eL~~LE~~Le~~l~~VR~r--K~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
.+|++++....=+++.........- -.+-+..++..++++...|+.++..|..++...+
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776666666542222211 1234456677888888888888888877766554
No 32
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=56.47 E-value=67 Score=22.52 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 21 EMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 21 e~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
+.++..+..|+ +.+.-+|.+|.+.++.++++-..|..+|.
T Consensus 69 ~~~~~eL~er~-E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 69 EEAVDELEERK-ETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454444 45556666777777666666666665554
No 33
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=56.02 E-value=16 Score=24.48 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047620 11 KDLQNLENQLEMSLKGVRLKKDQ 33 (125)
Q Consensus 11 ~eL~~LE~~Le~~l~~VR~rK~~ 33 (125)
.+|.++|++-+.+|..|+.|=..
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd~n 50 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKDNN 50 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 47899999999999999876443
No 34
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=54.74 E-value=58 Score=25.82 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHH
Q 047620 4 ELSGLNVKDLQNLENQLE--MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELH 57 (125)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le--~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~ 57 (125)
-|+.||.+|=.+ -+.|- .|...-|.||..-| +++...++.|.++|..|+
T Consensus 60 RL~HLS~EEK~~-RrKLKNRVAAQtaRDrKKaRm----~eme~~i~dL~een~~L~ 110 (292)
T KOG4005|consen 60 RLDHLSWEEKVQ-RRKLKNRVAAQTARDRKKARM----EEMEYEIKDLTEENEILQ 110 (292)
T ss_pred hhcccCHHHHHH-HHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 367777765322 22222 24455788887655 333344444444444443
No 35
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=54.65 E-value=33 Score=18.50 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 12 DLQNLENQLEMSLKGVRLKKDQVLTDEIKELNR 44 (125)
Q Consensus 12 eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkk 44 (125)
.|..|+..+..|+..-+--+--.+.++|..+++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 467788888888877777666666666666654
No 36
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=54.25 E-value=37 Score=25.14 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHhHHHHHHH
Q 047620 13 LQNLENQLEMSLKGVRLKKDQVLTDEI---KELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 13 L~~LE~~Le~~l~~VR~rK~~l~~~~i---~~lkkk~~~l~een~~L~~~l 60 (125)
|..+|..|..|+.+- -+|..+| +.|+.++..|.+|-+.|+.++
T Consensus 2 LeD~EsklN~AIERn-----alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERN-----ALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888764 4454444 345555555666666666665
No 37
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=53.72 E-value=30 Score=29.63 Aligned_cols=40 Identities=30% Similarity=0.064 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 24 LKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 24 l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
|.-=|+|=+|+-..-.-.+|++...+.+....|+.-+...
T Consensus 104 LhtgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~~ 143 (459)
T COG0165 104 LHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLDL 143 (459)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444778888877766788888888888888888777554
No 38
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=53.10 E-value=1.2e+02 Score=24.50 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 4 ELSGLNVKDLQNLENQLEMSLKGVRLKKDQVL--TDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~--~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+++.++..+|..|-..|..-...|..++.++- ..+...++.++....+.-..+...+.+.
T Consensus 197 e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 197 ELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888887777777666543 4444555555555555555555555544
No 39
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=52.23 E-value=30 Score=21.71 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 10 VKDLQNLENQLEMSLKGVRLKKDQV 34 (125)
Q Consensus 10 ~~eL~~LE~~Le~~l~~VR~rK~~l 34 (125)
-.|+..+|+.|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999888654
No 40
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=52.18 E-value=70 Score=27.23 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=22.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047620 3 EELSGLNVKDLQNLENQLEMSLKGVRLKK 31 (125)
Q Consensus 3 edL~~Ls~~eL~~LE~~Le~~l~~VR~rK 31 (125)
++|..||..-=+.+.+++++||.-|..-|
T Consensus 1 ~~Lk~lS~~GekyvdeEik~Al~GvKqMK 29 (436)
T PF01093_consen 1 ENLKELSEQGEKYVDEEIKNALNGVKQMK 29 (436)
T ss_pred CchHHHhHhCchhHHHHHHHHHHHHHHHH
Confidence 45667777777888999999998886544
No 41
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=51.69 E-value=43 Score=22.59 Aligned_cols=31 Identities=32% Similarity=0.348 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 32 DQVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 32 ~~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
-++..++.+-|+++...+.++|..|..++..
T Consensus 10 LqFvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 10 LQFVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888899999999999998887754
No 42
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=50.99 E-value=70 Score=27.55 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 33 QVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
++|..+...+..|++.++.+|..|..++..
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 456667778888999999999999988754
No 43
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=50.76 E-value=26 Score=28.44 Aligned_cols=54 Identities=28% Similarity=0.369 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHH-------------------------------HHHHHHHHHhhhHHHHh
Q 047620 11 KDLQNLENQLEMSLKGVRLK------KDQVLT-------------------------------DEIKELNRKGNLLHQEN 53 (125)
Q Consensus 11 ~eL~~LE~~Le~~l~~VR~r------K~~l~~-------------------------------~~i~~lkkk~~~l~een 53 (125)
.....||..|..+...|..= |++++. -+++.|++|.+.|++||
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 44566888888888877754 444431 12478999999999999
Q ss_pred HHHHHHHHHHh
Q 047620 54 LELHKKVNLIN 64 (125)
Q Consensus 54 ~~L~~~l~~~~ 64 (125)
..|+.+.....
T Consensus 177 ~~LR~Ea~~L~ 187 (306)
T PF04849_consen 177 EQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHhh
Confidence 99998876543
No 44
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.17 E-value=38 Score=27.62 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhH
Q 047620 6 SGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENL 54 (125)
Q Consensus 6 ~~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~ 54 (125)
.+||..|=.. |.+||.||.+++ .+|+.||..++...++-.
T Consensus 9 ~~Ls~~E~~e--------L~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid 48 (395)
T KOG0930|consen 9 NDLSEEERME--------LENIRRRKQELL-DEIQRLKDEIAEVMEEID 48 (395)
T ss_pred CCCCHHHHHh--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 4566655444 557999998876 678888887776555443
No 45
>PLN02372 violaxanthin de-epoxidase
Probab=49.11 E-value=1.4e+02 Score=25.52 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 047620 10 VKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQ 51 (125)
Q Consensus 10 ~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~e 51 (125)
++|..++|++++.-+.+||..-+.++..+ .+.+..+.|++
T Consensus 378 ~~e~~~~~~e~~~~v~~~~~~~~~~~~~~--~~~~~~~~l~~ 417 (455)
T PLN02372 378 VKEARQIEEELEKEVEKLGKEEESLFKRV--ALEEGLKELEQ 417 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 57788889999998988888777776543 34444444443
No 46
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=48.98 E-value=46 Score=25.26 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 29 LKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 29 ~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
.|+-+....+|..||.--..|+++|..|+.-.
T Consensus 47 NrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777788877777888888886543
No 47
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=48.83 E-value=80 Score=21.17 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 16 LENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 16 LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
+++..+.++..|..|+. .+...|+.+.++...+.+.-..+...+
T Consensus 61 v~~~~~e~~~~l~~r~e-~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKE-TLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred heecHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655553 335555666665555555544444443
No 48
>smart00030 CLb CLUSTERIN Beta chain.
Probab=47.54 E-value=1.2e+02 Score=23.27 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047620 3 EELSGLNVKDLQNLENQLEMSLKGVRLKK 31 (125)
Q Consensus 3 edL~~Ls~~eL~~LE~~Le~~l~~VR~rK 31 (125)
++|..||..==..+.+++++||.-|..-|
T Consensus 7 ~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK 35 (206)
T smart00030 7 NELQEMSTQGSKYINKEIKNALKGVKQIK 35 (206)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555666666778999999999986655
No 49
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=47.51 E-value=64 Score=19.67 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 35 LTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 35 ~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+..++..++++...+..+|..|..++...
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566788888888888888888887765
No 50
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=46.33 E-value=1.2e+02 Score=23.42 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 047620 13 LQNLENQ 19 (125)
Q Consensus 13 L~~LE~~ 19 (125)
+..|+..
T Consensus 160 ~~kL~~e 166 (216)
T KOG1962|consen 160 LEKLETE 166 (216)
T ss_pred HHHHHHH
Confidence 3333333
No 51
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=46.21 E-value=1e+02 Score=25.60 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 18 NQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 18 ~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
++||..+.+.+.++. .+.-+++.+++..+..++|+..|.+++++
T Consensus 130 q~LE~li~~~~EEn~-~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 130 QHLEGLIRHLREENQ-CLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHHHHH-HHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 345555566655553 33445666666666666666666666654
No 52
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=45.61 E-value=75 Score=19.89 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 12 DLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 12 eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
||..||..++.=+..... +..+-..|+..+..+..|+..|..+.+.
T Consensus 1 ~L~~Le~kle~Li~~~~~-----L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLER-----LKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888887776543 3334445666666666677666666543
No 53
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=45.32 E-value=1.4e+02 Score=26.84 Aligned_cols=53 Identities=13% Similarity=0.259 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 11 KDLQNLENQLEMSLKGVRLKKDQV---LTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 11 ~eL~~LE~~Le~~l~~VR~rK~~l---~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+.|..|+++-+.=+...|.++..+ ..++++.||.-+..|++|.+.|..+....
T Consensus 4 dkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 4 DKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999888888764 46788899999999999999987766543
No 54
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=43.93 E-value=40 Score=20.00 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=13.1
Q ss_pred CCCCCHHHHHH----HHHHHHHHHHHHHH
Q 047620 5 LSGLNVKDLQN----LENQLEMSLKGVRL 29 (125)
Q Consensus 5 L~~Ls~~eL~~----LE~~Le~~l~~VR~ 29 (125)
|..+|++||.. |...||.-+..+|.
T Consensus 5 Lk~ls~~eL~~rl~~LD~~ME~Eieelr~ 33 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDPEMEQEIEELRQ 33 (49)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55678887754 44444444444443
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=43.66 E-value=1.7e+02 Score=23.45 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 4 ELSGLNVKDLQNLENQLEMSLKGVRLKKDQVL--TDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~--~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+++.++..+|..|-..|...-..|..+|..+- ..+...++.++..+.++-..+...+.+.
T Consensus 202 e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 202 EIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999988888888887776653 4455555555555555555565555543
No 56
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=42.22 E-value=1.3e+02 Score=21.70 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHH
Q 047620 11 KDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELH 57 (125)
Q Consensus 11 ~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~ 57 (125)
.|...||..-.....+|+.|+.+|- ++.....=.++|.+.|+.+.
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~Lq--EL~~Q~va~knLv~RN~~~~ 45 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQ--ELILQQVAFKNLVQRNRQLE 45 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999988886653 22222222455666666554
No 57
>PRK09343 prefoldin subunit beta; Provisional
Probab=42.02 E-value=1.1e+02 Score=20.98 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 19 QLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 19 ~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
..+.+...|..|+ +.+...|..+.++...+++.-..+...+.
T Consensus 68 d~~e~~~~l~~r~-E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 68 DKTKVEKELKERK-ELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444 44455666666665555555555544443
No 58
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=41.95 E-value=2.1e+02 Score=24.14 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 9 NVKDLQNLENQLEMSLKGVRLKKDQVLTDEI 39 (125)
Q Consensus 9 s~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i 39 (125)
+=.|..+||++|-.+..-|-+||.+..+.+.
T Consensus 184 ee~di~~lErrL~qtmdmiisKKkk~a~~~l 214 (462)
T KOG2417|consen 184 EETDIIQLERRLAQTMDMIISKKKKMAMAQL 214 (462)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999887775
No 59
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=41.70 E-value=87 Score=19.56 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 33 QVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
..+..++..++++...++.+|..|..++....
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35566778888999999999999988877643
No 60
>PF15058 Speriolin_N: Speriolin N terminus
Probab=40.95 E-value=67 Score=24.50 Aligned_cols=32 Identities=28% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 32 DQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 32 ~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
++.++.+-++|||.++ |..||..|+.-+.+..
T Consensus 14 ierLv~ENeeLKKlVr-LirEN~eLksaL~ea~ 45 (200)
T PF15058_consen 14 IERLVRENEELKKLVR-LIRENHELKSALGEAC 45 (200)
T ss_pred HHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 3444577788998887 5567778887776554
No 61
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=40.83 E-value=93 Score=20.13 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 32 DQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 32 ~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
......+++.+++....++++|..|.-+.+...
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556789999999999999999988876543
No 62
>smart00338 BRLZ basic region leucin zipper.
Probab=40.60 E-value=82 Score=18.92 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHH
Q 047620 33 QVLTDEIKELNRKGNLLHQENLELHKK 59 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L~~~ 59 (125)
+.+..+...|+.++..|..++..|...
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666666555443
No 63
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.49 E-value=1.8e+02 Score=22.93 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=26.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 2 GEELSGLNVKDLQNLENQLEMSLKGVRLKK------DQVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 2 GedL~~Ls~~eL~~LE~~Le~~l~~VR~rK------~~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
|-|++.+.++ -.++.|.+||-+---+- .-=|.+..+.+|.|...+++++..|...+.+
T Consensus 97 GHDvEhiD~e---lvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~elee 160 (290)
T COG4026 97 GHDVEHIDVE---LVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEE 160 (290)
T ss_pred CCCccccCHH---HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666553 34444554443221111 1123334455555555555555555444433
No 64
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=40.19 E-value=97 Score=24.63 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 17 ENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 17 E~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
+.........|..+|.++| ..+.+|...|+++...|...+....
T Consensus 77 ~~~~~e~~~~l~~Kk~eLi----~~l~~kl~~L~~eqe~l~ee~~~n~ 120 (264)
T PF08687_consen 77 SDSDDENDNDLNAKKVELI----ESLSKKLEVLQEEQEALQEEIQANE 120 (264)
T ss_dssp ---------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677889999998 7889999999999888887776543
No 65
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.77 E-value=2.4e+02 Score=25.36 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 11 KDLQNLENQLEMSLKGVRL-----KKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 11 ~eL~~LE~~Le~~l~~VR~-----rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+++..||..|+..-.+++. |+.+.+...|..|+++...-...-..|..++...
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777666653 3445566777777776665555555566665543
No 66
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=38.82 E-value=54 Score=23.64 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhhHHHHhHHHHHH
Q 047620 34 VLTDEIKELNRKGNLLHQENLELHKK 59 (125)
Q Consensus 34 l~~~~i~~lkkk~~~l~een~~L~~~ 59 (125)
-|..+|+.|+.|+..|.+....|+..
T Consensus 110 ~ID~eIe~Lq~Ki~~LKeiR~hLk~~ 135 (145)
T PF12548_consen 110 HIDHEIETLQDKIKNLKEIRGHLKKK 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999888764
No 67
>PHA01750 hypothetical protein
Probab=38.54 E-value=1e+02 Score=19.53 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHH
Q 047620 17 ENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKK 59 (125)
Q Consensus 17 E~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~ 59 (125)
-+-|.+|++.|=.+--.-+..+|+.+++|..++++.-..+.++
T Consensus 29 Kq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 29 KQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455566655544444444555666665555555544444443
No 68
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.93 E-value=1.6e+02 Score=21.62 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 10 VKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 10 ~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+.+|......|..+|..+.. .+-+..+|..|++....+.+.-+.+...|...
T Consensus 4 ~~~L~~~d~~L~~~L~~l~~--hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~ 55 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQE--HQENQARIQQLRAEIEELDEQIRDILKQLKEA 55 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999998844 44456666666666666665555555555443
No 69
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=36.17 E-value=1.9e+02 Score=26.72 Aligned_cols=43 Identities=33% Similarity=0.331 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 15 NLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 15 ~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
.|+.||..+++.. +++...-++|-|-+..+.+||+.|...+.+
T Consensus 438 ~Lq~ql~es~k~~-----e~lq~kneellk~~e~q~~Enk~~~~~~~e 480 (861)
T PF15254_consen 438 SLQNQLQESLKSQ-----ELLQSKNEELLKVIENQKEENKRLRKMFQE 480 (861)
T ss_pred HHHHHHHHHHHhH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665543 344444455555566666677666665544
No 70
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=35.97 E-value=76 Score=18.80 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=20.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047620 4 ELSGLNVKDLQNLENQLEMSLKGVRLK 30 (125)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~~l~~VR~r 30 (125)
||-.+|.+||...-..+...|-..|-.
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~ 27 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQ 27 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888877777754
No 71
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=35.95 E-value=1.6e+02 Score=23.40 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047620 11 KDLQNLENQLEMSLKGVRLKK 31 (125)
Q Consensus 11 ~eL~~LE~~Le~~l~~VR~rK 31 (125)
-|+..+|+.|..++..++..-
T Consensus 158 ~e~~~iE~~l~~ai~~~~~~~ 178 (267)
T PF10234_consen 158 LELNEIEKALKEAIKAVQQQL 178 (267)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 467789999999998887653
No 72
>PRK11637 AmiB activator; Provisional
Probab=35.04 E-value=2.6e+02 Score=23.12 Aligned_cols=11 Identities=9% Similarity=0.471 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 047620 12 DLQNLENQLEM 22 (125)
Q Consensus 12 eL~~LE~~Le~ 22 (125)
+|.++++++..
T Consensus 48 ~l~~l~~qi~~ 58 (428)
T PRK11637 48 QLKSIQQDIAA 58 (428)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 73
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=34.17 E-value=1.1e+02 Score=18.59 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=14.1
Q ss_pred HHHHHhhhHHHHhHHHHHHHH
Q 047620 41 ELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 41 ~lkkk~~~l~een~~L~~~l~ 61 (125)
.+-.....|+++|..|+.-+.
T Consensus 37 ~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 37 ALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445678888888876653
No 74
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.89 E-value=1.4e+02 Score=19.69 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 17 ENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 17 E~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
+...+.+...+..++ +.+...|+.+.++...+..+-..+..++.+
T Consensus 58 ~~~~~ea~~~Le~~~-e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 58 KQEKEEARTELKERL-ETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred hccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444 344555566666666666655555555543
No 75
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=33.01 E-value=2e+02 Score=21.35 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 37 DEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 37 ~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
++|..++.+...|..++..|..+..
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~ 135 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELA 135 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555554443
No 76
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.79 E-value=1.5e+02 Score=19.71 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 17 ENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 17 E~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
|..++.|...+..|+ ..+..+++.+.+....+..+-..+...+.
T Consensus 82 e~~~~eA~~~l~~r~-~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 82 EKSLEEAIEFLKKRL-ETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred EecHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556665554433 45556666666666666665555555443
No 77
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=32.33 E-value=1.2e+02 Score=24.68 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 14 QNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 14 ~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
..|-++=|.|-..=| ||.+.+ +-|..++.-|+..|+.|-.+|...
T Consensus 294 vRLmKNREAARECRR-KKKEYV----KCLENRVAVLENQNKaLIEELKtL 338 (348)
T KOG3584|consen 294 VRLMKNREAARECRR-KKKEYV----KCLENRVAVLENQNKALIEELKTL 338 (348)
T ss_pred HHHHhhHHHHHHHHH-hHhHHH----HHHHhHHHHHhcccHHHHHHHHHH
Confidence 345555555544444 443443 677888888888888887777554
No 78
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=31.16 E-value=2e+02 Score=23.48 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHH
Q 047620 18 NQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKK 59 (125)
Q Consensus 18 ~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~ 59 (125)
.+|...+..++. ++.++..++.+.+.+.+.|.++|+.|+..
T Consensus 23 ~~l~~~~~sL~q-en~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 23 EQLRKRIESLQQ-ENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555655 46677777788888888888888877655
No 79
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=29.33 E-value=1.8e+02 Score=20.51 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 7 GLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 7 ~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
+++++++..+=..+...-...-..-..++.+++..+..+...|..--..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777776654432211111111123444555566666655555555554443
No 80
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=29.03 E-value=78 Score=18.19 Aligned_cols=29 Identities=31% Similarity=0.420 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 32 DQVLTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 32 ~~l~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
...+...|..+.++.-.|..||..|+..+
T Consensus 16 Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 16 NSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------HHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34555667777777777888888777654
No 81
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.90 E-value=1.8e+02 Score=19.31 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHH
Q 047620 33 QVLTDEIKELNRKGNLLHQENLELHK 58 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L~~ 58 (125)
.++.+++..+..+...|...-..|..
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (113)
T cd01109 82 ELLEEHREELEEQIAELQETLAYLDY 107 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444444433
No 82
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=28.59 E-value=1.6e+02 Score=18.58 Aligned_cols=35 Identities=34% Similarity=0.374 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 29 LKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 29 ~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+++..-..+.|..|+.++..++.....|..++...
T Consensus 25 Sk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 25 SKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666666666666555543
No 83
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.52 E-value=1.9e+02 Score=19.92 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 17 ENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 17 E~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
|..++.|+.-+..|+ ..+...++.+.+....+.+.-..+...+..
T Consensus 89 E~~~~eA~~~l~~~~-~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 89 EKDLDEAIEILDKRK-EELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred EecHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777775555 445566677777666666666555555544
No 84
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=28.52 E-value=1.9e+02 Score=19.53 Aligned_cols=26 Identities=35% Similarity=0.253 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 35 LTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 35 ~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
...++..|+++...|..|+..|....
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888887776544
No 85
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.25 E-value=2.7e+02 Score=24.07 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHH
Q 047620 23 SLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKK 59 (125)
Q Consensus 23 ~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~ 59 (125)
+.++|=++|.+-+.+.++.+.+....+.|+|+.|...
T Consensus 375 ~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556777777788888888888888888776543
No 86
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.03 E-value=1.3e+02 Score=17.30 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 31 KDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 31 K~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
-...+...-+.|+..-..|..+|..|+.++...
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677888888888888888888877654
No 87
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=27.78 E-value=2.5e+02 Score=22.99 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
.-|...|.+. .-+..+++.|+++...++.+++.|+.++...
T Consensus 72 ~lL~~sre~N-k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 72 QLLSESREQN-KKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 3344444443 3456788899999999999999998887654
No 88
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.75 E-value=2.3e+02 Score=25.40 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 10 VKDLQNLENQLEMSLKGVRLKKDQ 33 (125)
Q Consensus 10 ~~eL~~LE~~Le~~l~~VR~rK~~ 33 (125)
.+++..++..++.-=..+++=|..
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~ 444 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRE 444 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666655555555444433
No 89
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=27.65 E-value=2.2e+02 Score=25.08 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 27 VRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 27 VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
|..-=.+.+.++|+++-+.+..|+++|..|..++.+.+
T Consensus 360 v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e 397 (557)
T PF01763_consen 360 VSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELE 397 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555678899999999999999999999999998775
No 90
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=27.61 E-value=1.8e+02 Score=18.89 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 35 LTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 35 ~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
|...|+..+.....|..+|..|..-|..
T Consensus 35 L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 35 LSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556667777777665543
No 91
>PF01517 HDV_ag: Hepatitis delta virus delta antigen; InterPro: IPR002506 The Hepatitis delta virus (HDV) encodes a single protein, the hepatitis delta antigen (HDAg). The central region of this protein has been shown to bind RNA []. Several interactions are also mediated by a coiled-coil region at the N terminus of the protein [].; GO: 0003723 RNA binding, 0042025 host cell nucleus; PDB: 1A92_D 1BY0_A.
Probab=27.53 E-value=2.4e+02 Score=21.03 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 16 LENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 16 LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
=|..|+.++.-- +|.+-+...+...+++++.|+++|--|-.-.-
T Consensus 13 re~~le~wv~~r--k~~eeler~lrk~~k~ikkled~npwlgni~g 56 (194)
T PF01517_consen 13 REEILEQWVSGR--KKAEELERDLRKAKKKIKKLEDDNPWLGNIKG 56 (194)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccCccchhhhh
Confidence 466677777643 23345566777888899999999976654433
No 92
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.37 E-value=3.2e+02 Score=22.17 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
.|..|-|.||..-+ +.+--....|..+|..|+......+
T Consensus 237 ~AAtRYRqKkRae~----E~l~ge~~~Le~rN~~LK~qa~~le 275 (294)
T KOG4571|consen 237 AAATRYRQKKRAEK----EALLGELEGLEKRNEELKDQASELE 275 (294)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888886554 4444445556666777766665554
No 93
>PF13270 DUF4061: Domain of unknown function (DUF4061)
Probab=26.93 E-value=1.9e+02 Score=19.09 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 10 VKDLQNLENQLEMSLKGVRLKKDQVLTD--EIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 10 ~~eL~~LE~~Le~~l~~VR~rK~~l~~~--~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+.|++..|+-|-.-|.--++-|.+.+.. .++.+ .++|..++.-..|..++...
T Consensus 1 v~dv~~mE~~Ll~Ll~dF~sGkl~aFG~~cs~eqM-~~IReqQE~LarlHfeL~~~ 55 (90)
T PF13270_consen 1 VSDVRHMEKGLLQLLEDFHSGKLQAFGKECSMEQM-TKIREQQEKLARLHFELDSE 55 (90)
T ss_pred CchHHHHHHHHHHHHHHHhhhHHHHcCCCCcHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 3578889999999999999999998865 33333 35777777777887777544
No 94
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=26.54 E-value=1.4e+02 Score=17.42 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Q 047620 30 KKDQVLTDEIKELNRKGNLLHQE 52 (125)
Q Consensus 30 rK~~l~~~~i~~lkkk~~~l~ee 52 (125)
.|.+=+..+|..|.+|...|...
T Consensus 19 qkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 19 QKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHh
Confidence 34444566666666665554443
No 95
>PRK15067 ethanolamine ammonia lyase large subunit; Provisional
Probab=26.03 E-value=39 Score=28.84 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=15.8
Q ss_pred ccccCCCCCCCcccccCCCCC
Q 047620 91 YTISNGYDMHPPLHLQLSQPQ 111 (125)
Q Consensus 91 ~~~~~~~~~~~~~~Lq~~qpn 111 (125)
+..+.+.+.-+..||||+||-
T Consensus 147 ~r~tIGl~G~ls~RlQPNhPT 167 (461)
T PRK15067 147 FRTTIGLPGTLSARLQPNHPT 167 (461)
T ss_pred CcCccCCCceeeeecCCCCCC
Confidence 344455677889999999983
No 96
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=25.87 E-value=2.3e+02 Score=21.29 Aligned_cols=36 Identities=36% Similarity=0.424 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHH
Q 047620 24 LKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKK 59 (125)
Q Consensus 24 l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~ 59 (125)
+-..|.-|..-+.++|..++.+...+..||..|..-
T Consensus 6 vlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~l 41 (194)
T PF15619_consen 6 VLSARLHKIKELQNELAELQRKLQELRKENKTLKQL 41 (194)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677778888999999999999999888643
No 97
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.66 E-value=1.8e+02 Score=19.52 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHH
Q 047620 17 ENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHK 58 (125)
Q Consensus 17 E~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~ 58 (125)
|..++.|..-+..|+ ..+..+++.+.+....+.++-..+..
T Consensus 81 E~~~~eA~~~l~~~~-~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 81 EKDAEEAIEFLKKRI-EELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred EecHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666665544 33445555555555555554444433
No 98
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=25.46 E-value=2.3e+02 Score=19.46 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 7 GLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 7 ~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
++|++|+..+=.....+-... ..-..++..++..+..+...+...-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777776543322211111 11124566666666776666665555555444
No 99
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=25.35 E-value=3.7e+02 Score=21.86 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H--------HHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 14 QNLENQLEMSLKGVRLKKDQVLTDE--I--------KELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 14 ~~LE~~Le~~l~~VR~rK~~l~~~~--i--------~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
.-|.+||+.|-.++-.+..-++.-| . ....+++..|++.|+.|..+.....
T Consensus 231 ~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~Lk 291 (305)
T PF14915_consen 231 MLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLK 291 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3478999999999876654444322 2 2345566668888888887766543
No 100
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=25.24 E-value=1.3e+02 Score=18.89 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 33 QVLTDEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
++.+..|+.+++|++.|+-.-......+.
T Consensus 2 q~~ms~l~eiqkKvrkLqsrAg~akm~Lh 30 (71)
T COG5420 2 QVEMSSLEEIQKKVRKLQSRAGQAKMELH 30 (71)
T ss_pred chhHhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45677788888888887766554444443
No 101
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.22 E-value=2.2e+02 Score=19.06 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHH
Q 047620 33 QVLTDEIKELNRKGNLLHQENLELHKK 59 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L~~~ 59 (125)
.++.++++.+.++...++..-..|...
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (116)
T cd04769 82 QALEDKKQEIRAQITELQQLLARLDAF 108 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544444443
No 102
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=24.84 E-value=1.2e+02 Score=18.53 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047620 3 EELSGLNVKDLQNLENQLEMSLKGVRLKK 31 (125)
Q Consensus 3 edL~~Ls~~eL~~LE~~Le~~l~~VR~rK 31 (125)
.||-.+|.+||...-..+..-|-..|..+
T Consensus 4 ~elr~ls~~eL~~~l~~lkkeL~~lR~~~ 32 (66)
T PRK00306 4 KELRELSVEELNEKLLELKKELFNLRFQK 32 (66)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778889999888888888888887544
No 103
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.60 E-value=2.8e+02 Score=20.12 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHH
Q 047620 9 NVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLEL 56 (125)
Q Consensus 9 s~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L 56 (125)
+-.|+..++..+..++..+|.--..+-..++..++.....|+.+-..|
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l 92 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKL 92 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888886544443444444444433333333333
No 104
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=24.48 E-value=50 Score=24.02 Aligned_cols=18 Identities=44% Similarity=0.673 Sum_probs=14.9
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 047620 5 LSGLNVKDLQNLENQLEM 22 (125)
Q Consensus 5 L~~Ls~~eL~~LE~~Le~ 22 (125)
|..||.+||.+|+..|+.
T Consensus 21 L~~LS~EEL~~L~~el~e 38 (147)
T PF03250_consen 21 LAKLSPEELEELENELEE 38 (147)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 468999999999987753
No 105
>PRK11637 AmiB activator; Provisional
Probab=24.15 E-value=4.1e+02 Score=21.93 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=7.9
Q ss_pred HHHHHHhhhHHHHhHHHHHHH
Q 047620 40 KELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 40 ~~lkkk~~~l~een~~L~~~l 60 (125)
..+++++..++.+-..+..++
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 106
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=23.78 E-value=61 Score=19.40 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047620 5 LSGLNVKDLQNLENQLEMSLKGVRLKK 31 (125)
Q Consensus 5 L~~Ls~~eL~~LE~~Le~~l~~VR~rK 31 (125)
|-.||.+||...-..+...|-..|..+
T Consensus 4 lr~ls~~eL~~~l~elk~eL~~Lr~q~ 30 (58)
T PF00831_consen 4 LRELSDEELQEKLEELKKELFNLRFQK 30 (58)
T ss_dssp HCHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665555555555555543
No 107
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=23.52 E-value=2e+02 Score=18.52 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047620 20 LEMSLKGVRLKKDQVLTDEIK 40 (125)
Q Consensus 20 Le~~l~~VR~rK~~l~~~~i~ 40 (125)
|+.....+|.+|.+-+..+++
T Consensus 54 le~~~~~~~~k~~~rl~~~~e 74 (80)
T PF09803_consen 54 LEEFKEELRKKREERLLREME 74 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333
No 108
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.47 E-value=2.4e+02 Score=19.01 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHH
Q 047620 17 ENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLEL 56 (125)
Q Consensus 17 E~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L 56 (125)
|..++.|..-+..| ...+...++.+.+....+.++-..+
T Consensus 82 E~~~~eA~~~l~~r-~~~l~~~~~~l~~~l~~l~~~~~~~ 120 (129)
T cd00584 82 EKDLEEAIEFLDKK-IEELTKQIEKLQKELAKLKDQINTL 120 (129)
T ss_pred EecHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555444333 3444455555555444444444333
No 109
>COG5570 Uncharacterized small protein [Function unknown]
Probab=22.78 E-value=1.9e+02 Score=17.51 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 047620 15 NLENQLEMSLK 25 (125)
Q Consensus 15 ~LE~~Le~~l~ 25 (125)
.||..+..|+.
T Consensus 16 ~le~ei~ea~n 26 (57)
T COG5570 16 NLEREIQEAMN 26 (57)
T ss_pred hHHHHHHHHhc
Confidence 35555555554
No 110
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=22.65 E-value=2.3e+02 Score=22.86 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047620 15 NLENQLEMSLKGVRLKKDQV 34 (125)
Q Consensus 15 ~LE~~Le~~l~~VR~rK~~l 34 (125)
+-+.+|+.-+...++.|.++
T Consensus 91 ~q~s~Leddlsqt~aikeql 110 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQL 110 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666554
No 111
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=22.50 E-value=1.9e+02 Score=23.14 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 19 QLEMSLKGVRLKKDQVLTDEIKELNRK 45 (125)
Q Consensus 19 ~Le~~l~~VR~rK~~l~~~~i~~lkkk 45 (125)
+.|.+|.-+|.+|..+ ..+|..++.|
T Consensus 135 ~~E~sl~p~R~~r~~l-~d~I~kLk~k 160 (271)
T PF13805_consen 135 NREESLQPSRDRRRKL-QDEIAKLKYK 160 (271)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHhHHHHHhHHH-HHHHHHHHhc
Confidence 4566777788888655 5888888865
No 112
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.41 E-value=2.9e+02 Score=19.55 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 13 LQNLENQLEMSLKGVRLKKDQVL--TDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 13 L~~LE~~Le~~l~~VR~rK~~l~--~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+..||..|+.+=.+++..-.++= .-..+.+.+++..|..+...+-.++...
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555555555555544433322 2333555666666666666666665544
No 113
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.35 E-value=2e+02 Score=17.52 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 30 KKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 30 rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
.|..-+..+|..|..|+..|..+-..++-.+....
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788888888888888888888887775543
No 114
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=21.96 E-value=1.9e+02 Score=23.28 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=21.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047620 3 EELSGLNVKDLQNLENQLEMSLKGVRL 29 (125)
Q Consensus 3 edL~~Ls~~eL~~LE~~Le~~l~~VR~ 29 (125)
|.|.+|++.||.+|-..|...+..|-+
T Consensus 214 EeL~~Mt~~EL~qL~~~L~~qIq~vfe 240 (285)
T PF06937_consen 214 EELNSMTLDELKQLNEKLLQQIQDVFE 240 (285)
T ss_pred HHhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998888776666544
No 115
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=21.71 E-value=3.5e+02 Score=20.24 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=4.5
Q ss_pred HHHHhHHHHHHH
Q 047620 49 LHQENLELHKKV 60 (125)
Q Consensus 49 l~een~~L~~~l 60 (125)
+..+...|..++
T Consensus 176 l~~ei~~L~~kl 187 (194)
T PF15619_consen 176 LQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 116
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=21.36 E-value=3.1e+02 Score=24.35 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=25.2
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 26 GVRLKKDQVL---TDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 26 ~VR~rK~~l~---~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
.-|.||.+.+ ...|..+-+.-..|..||..|+.+|....
T Consensus 295 ~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 295 QSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3455555543 45566666666678888888888877643
No 117
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=21.07 E-value=3.3e+02 Score=19.71 Aligned_cols=47 Identities=26% Similarity=0.370 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 7 GLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 7 ~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
+++++|+..+=..-... ...++.+++..+.++...|...-..|...+
T Consensus 58 G~sL~eI~~ll~~~~~~-------~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 58 GVSLEDIRSLLQQPGDD-------ATDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred CCCHHHHHHHHhcCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666543222211 123444455555555555555444444433
No 118
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=21.02 E-value=3.6e+02 Score=22.53 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=24.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 047620 4 ELSGLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLL 49 (125)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l 49 (125)
+|++.|++|+..|-+. ++-+..+++.|+.|+..|
T Consensus 25 ~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 25 ELEGVSIDENFALRME------------NHSLKKENNDLKIEVERL 58 (420)
T ss_pred cccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHH
Confidence 5788888888877443 234556777788777777
No 119
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=20.59 E-value=1.9e+02 Score=16.82 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=5.4
Q ss_pred CCCHHHHHHHH
Q 047620 7 GLNVKDLQNLE 17 (125)
Q Consensus 7 ~Ls~~eL~~LE 17 (125)
++|++|+..+=
T Consensus 14 GfsL~eI~~~l 24 (65)
T PF09278_consen 14 GFSLEEIRELL 24 (65)
T ss_dssp T--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 46666666654
No 120
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.48 E-value=6.6e+02 Score=22.91 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 12 DLQNLENQLEMSLKGVRLKKDQVL 35 (125)
Q Consensus 12 eL~~LE~~Le~~l~~VR~rK~~l~ 35 (125)
++..+.+.++.-...++.+|.+++
T Consensus 540 e~~~~~~~l~~~~~~l~~~~~~~~ 563 (771)
T TIGR01069 540 EQEKLKKELEQEMEELKERERNKK 563 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555
No 121
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.48 E-value=2.7e+02 Score=18.49 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHH
Q 047620 33 QVLTDEIKELNRKGNLLHQENLEL 56 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L 56 (125)
+++..++..+..+...|...-..|
T Consensus 84 ~~l~~~~~~l~~~i~~L~~~~~~L 107 (112)
T cd01282 84 AVLRRELARIDRQIADLTRSRDRL 107 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433333
No 122
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=20.41 E-value=4.8e+02 Score=21.29 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=8.7
Q ss_pred HHHHHhhhHHHHhHHHHHHH
Q 047620 41 ELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 41 ~lkkk~~~l~een~~L~~~l 60 (125)
.|.|+...|..+++.|..+|
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 123
>PF09514 SSXRD: SSXRD motif; InterPro: IPR019041 Protein SSX1 can repress transcription, and this has been attributed to a putative Kruppel associated box (KRAB) repression domain at the N terminus. However, from the analysis of these deletion constructs further repression activity was found at the C terminus of SSX1. Which has been called the SSXRD (SSX Repression Domain). The potent repression exerted by full-length SSX1 appears to localise to this region []. ; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.30 E-value=14 Score=20.33 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047620 20 LEMSLKGVRLKKDQVLTDEIK 40 (125)
Q Consensus 20 Le~~l~~VR~rK~~l~~~~i~ 40 (125)
.+.+..+.|.||+.+..++|.
T Consensus 7 v~vw~~rLRERk~~~~YeEIS 27 (34)
T PF09514_consen 7 VNVWMYRLRERKNPVAYEEIS 27 (34)
T ss_pred cchhhhhhhhhccccceeecc
Confidence 445677888888766655553
Done!