Query 047620
Match_columns 125
No_of_seqs 155 out of 1262
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 23:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 95.2 0.31 1.1E-05 31.1 9.4 46 8-58 3-48 (81)
2 2dgc_A Protein (GCN4); basic d 91.1 1.1 3.6E-05 27.0 6.5 39 22-64 19-57 (63)
3 1dh3_A Transcription factor CR 90.6 1.3 4.4E-05 25.9 6.3 38 23-64 12-49 (55)
4 1t2k_D Cyclic-AMP-dependent tr 89.9 1.9 6.6E-05 25.4 7.1 40 22-65 11-50 (61)
5 2wt7_A Proto-oncogene protein 89.7 1.8 6.1E-05 25.8 6.6 39 23-65 13-51 (63)
6 1jnm_A Proto-oncogene C-JUN; B 89.1 2.1 7.2E-05 25.3 6.6 40 22-65 11-50 (62)
7 1ci6_A Transcription factor AT 87.9 2.8 9.6E-05 25.0 6.6 40 22-65 12-51 (63)
8 1dip_A Delta-sleep-inducing pe 84.0 1.7 5.9E-05 27.2 4.2 26 33-58 18-43 (78)
9 1hjb_A Ccaat/enhancer binding 78.0 11 0.00036 24.1 6.6 40 22-65 25-64 (87)
10 1gu4_A CAAT/enhancer binding p 76.8 11 0.00038 23.5 6.6 40 22-65 25-64 (78)
11 3nmd_A CGMP dependent protein 76.6 11 0.00037 23.3 7.3 44 13-61 21-64 (72)
12 2oqq_A Transcription factor HY 76.0 8 0.00027 21.4 5.4 26 35-60 15-40 (42)
13 2yy0_A C-MYC-binding protein; 74.3 7.6 0.00026 22.4 4.8 29 33-61 22-50 (53)
14 2aze_A Transcription factor DP 65.2 33 0.0011 24.1 7.9 47 9-57 3-49 (155)
15 1a93_B MAX protein, coiled coi 65.0 12 0.00041 19.8 3.8 25 29-53 6-30 (34)
16 3s9g_A Protein hexim1; cyclin 63.7 28 0.00096 22.8 8.1 56 4-60 26-88 (104)
17 3thf_A Protein shroom; coiled- 63.2 17 0.0006 26.4 5.7 37 24-64 10-46 (190)
18 3s4r_A Vimentin; alpha-helix, 62.1 28 0.00094 22.2 6.6 14 15-28 13-26 (93)
19 2dfs_A Myosin-5A; myosin-V, in 59.3 45 0.0015 30.1 8.7 25 40-64 1019-1043(1080)
20 1gd2_E Transcription factor PA 58.8 28 0.00095 21.1 6.7 39 21-63 17-62 (70)
21 3oja_B Anopheles plasmodium-re 58.0 66 0.0023 26.0 9.0 22 40-61 554-575 (597)
22 1j1d_C Troponin I, TNI; THIN f 57.7 43 0.0015 22.9 7.5 32 4-35 54-85 (133)
23 1go4_E MAD1 (mitotic arrest de 57.4 18 0.00063 23.6 4.5 28 37-64 12-39 (100)
24 2l5g_A GPS2 protein, G protein 56.1 17 0.0006 19.5 3.5 22 37-58 15-36 (38)
25 3hnw_A Uncharacterized protein 56.1 45 0.0015 22.7 8.9 52 12-63 76-129 (138)
26 2w6a_A ARF GTPase-activating p 55.4 30 0.001 20.5 8.4 52 6-57 8-61 (63)
27 1e52_A Excinuclease ABC subuni 49.5 16 0.00054 21.8 3.0 42 4-45 13-58 (63)
28 1j1e_C Troponin I, TNI; THIN f 48.9 61 0.0021 23.3 6.5 32 4-35 54-85 (180)
29 3s4r_A Vimentin; alpha-helix, 47.2 52 0.0018 20.8 8.7 32 33-64 52-83 (93)
30 1g6u_A Domain swapped dimer; d 46.9 35 0.0012 18.7 4.7 22 6-27 15-36 (48)
31 1gk7_A Vimentin; intermediate 45.0 35 0.0012 18.3 4.8 25 37-61 13-37 (39)
32 1j1d_B Troponin T, TNT; THIN f 44.8 63 0.0022 21.1 6.7 32 4-35 38-69 (106)
33 3gp4_A Transcriptional regulat 43.5 72 0.0024 21.4 8.0 57 7-64 59-115 (142)
34 1a92_A Delta antigen; leucine 43.2 45 0.0015 18.9 5.4 24 33-56 17-40 (50)
35 1ytz_T Troponin T; muscle, THI 41.1 74 0.0025 20.8 6.8 32 4-35 38-69 (107)
36 1ci6_A Transcription factor AT 40.3 55 0.0019 19.1 5.6 30 31-60 31-60 (63)
37 1t2k_D Cyclic-AMP-dependent tr 38.6 56 0.0019 18.7 5.2 29 32-60 31-59 (61)
38 3azd_A Short alpha-tropomyosin 36.9 18 0.00063 19.2 1.7 26 37-62 4-29 (37)
39 2wh0_Q Pkcev3, protein kinase 36.3 27 0.00093 17.5 2.1 15 11-25 13-27 (31)
40 1nkp_B MAX protein, MYC proto- 35.5 74 0.0025 19.2 5.9 20 41-60 58-77 (83)
41 3ra3_B P2F; coiled coil domain 35.1 43 0.0015 16.4 2.9 13 49-61 5-17 (28)
42 2jo8_A Serine/threonine-protei 34.9 46 0.0016 19.1 3.2 11 5-15 7-17 (51)
43 2l5g_B Putative uncharacterize 34.6 59 0.002 17.8 4.8 15 38-52 24-38 (42)
44 3uux_B Mitochondrial division 34.2 1.5E+02 0.005 22.3 9.4 58 7-65 148-205 (242)
45 3aei_A Prefoldin beta subunit 32.9 92 0.0031 19.6 5.0 24 34-57 72-95 (99)
46 3oja_A Leucine-rich immune mol 32.7 1.4E+02 0.0048 23.5 7.0 40 20-63 422-461 (487)
47 3gpv_A Transcriptional regulat 32.2 1.1E+02 0.0039 20.4 7.4 54 7-61 73-126 (148)
48 3mtu_A Tropomyosin alpha-1 cha 30.9 91 0.0031 18.9 6.9 37 27-63 6-42 (75)
49 2jee_A YIIU; FTSZ, septum, coi 30.7 1E+02 0.0034 19.3 5.6 33 30-62 13-45 (81)
50 1am9_A Srebp-1A, protein (ster 30.3 95 0.0032 18.9 4.5 25 39-63 52-76 (82)
51 3q4f_C DNA repair protein XRCC 30.0 60 0.002 23.4 3.9 24 36-59 160-183 (186)
52 3m9b_A Proteasome-associated A 29.7 1.2E+02 0.0042 22.8 5.8 31 34-64 58-88 (251)
53 2qez_A Ethanolamine ammonia-ly 28.3 19 0.00065 29.4 1.1 21 91-111 148-168 (455)
54 3m48_A General control protein 28.0 64 0.0022 16.8 2.8 21 41-61 4-24 (33)
55 1deb_A APC protein, adenomatou 28.0 90 0.0031 17.9 3.9 20 44-63 10-29 (54)
56 2qdq_A Talin-1; dimerisation d 27.7 64 0.0022 18.4 3.0 12 45-56 20-31 (50)
57 2zxx_A Geminin; coiled-coil, c 27.5 1.1E+02 0.0037 19.0 4.3 29 34-62 38-66 (79)
58 3v1a_A Computational design, M 27.4 88 0.003 17.6 3.8 38 16-53 6-43 (48)
59 3abq_A Ethanolamine ammonia-ly 26.9 19 0.00065 29.4 0.9 21 91-111 147-167 (453)
60 3w03_C DNA repair protein XRCC 26.4 1.2E+02 0.004 21.8 5.0 29 35-63 150-178 (184)
61 3a7p_A Autophagy protein 16; c 26.4 1.7E+02 0.0057 20.4 9.7 52 11-62 68-135 (152)
62 1uii_A Geminin; human, DNA rep 26.1 1.3E+02 0.0043 18.9 5.4 22 36-57 52-73 (83)
63 2dfs_A Myosin-5A; myosin-V, in 25.2 3.8E+02 0.013 24.1 9.1 16 12-27 971-986 (1080)
64 2oxj_A Hybrid alpha/beta pepti 24.7 84 0.0029 16.4 3.1 21 41-61 5-25 (34)
65 3hnw_A Uncharacterized protein 23.2 1.8E+02 0.006 19.6 8.6 53 11-63 68-122 (138)
66 3na7_A HP0958; flagellar bioge 23.0 2.2E+02 0.0076 20.7 7.8 36 9-44 88-125 (256)
67 1deq_A Fibrinogen (alpha chain 22.2 3.1E+02 0.01 22.0 7.7 20 14-33 59-78 (390)
68 2wg5_A General control protein 22.0 94 0.0032 20.0 3.5 22 35-56 12-33 (109)
69 1z0k_B FYVE-finger-containing 21.6 1.4E+02 0.0049 18.0 5.0 42 15-56 24-65 (69)
70 2ygg_A Sodium/hydrogen exchang 21.0 1.4E+02 0.0049 18.1 3.9 24 7-30 3-26 (70)
71 2zvf_A Alanyl-tRNA synthetase; 20.9 1.1E+02 0.0039 20.5 3.9 53 10-63 6-58 (171)
72 4dzo_A Mitotic spindle assembl 20.7 1.9E+02 0.0066 19.1 5.7 13 11-23 4-16 (123)
73 2zdi_C Prefoldin subunit alpha 20.6 1.1E+02 0.0036 20.6 3.7 45 18-63 94-138 (151)
74 1q08_A Zn(II)-responsive regul 20.5 1.5E+02 0.0052 17.9 6.1 54 7-61 16-70 (99)
75 2zqm_A Prefoldin beta subunit 20.4 1.7E+02 0.0057 18.3 7.1 42 20-62 68-109 (117)
76 1fxk_A Prefoldin; archaeal pro 20.4 1.6E+02 0.0055 18.1 6.4 40 20-60 63-102 (107)
77 2xus_A Breast cancer metastasi 20.2 1.3E+02 0.0045 17.0 5.4 16 31-46 26-41 (49)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.23 E-value=0.31 Score=31.06 Aligned_cols=46 Identities=26% Similarity=0.432 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHH
Q 047620 8 LNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHK 58 (125)
Q Consensus 8 Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~ 58 (125)
+|++=|.+||..+..|+..| .++..+|+.||.|-..|.+++..++.
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999998 66777778888888887777766433
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.13 E-value=1.1 Score=27.02 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
.|..+.|.||.+.+ ..|..++..|..+|..|..++....
T Consensus 19 eAArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 19 EAARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888887766 8899999999999999998887653
No 3
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=90.56 E-value=1.3 Score=25.89 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 23 SLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 23 ~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
|..+-|.||...+ +.|..++..|..+|..|..++....
T Consensus 12 sA~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 12 AARESRRKKKEYV----KSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677776555 7888999999999999999887654
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=89.87 E-value=1.9 Score=25.38 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620 22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ 65 (125)
Q Consensus 22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~ 65 (125)
.|..+-|.||.+.+ ..|..++..|..+|..|..++.....
T Consensus 11 ~AA~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 11 AAASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788887766 78999999999999999999887654
No 5
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=89.70 E-value=1.8 Score=25.82 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620 23 SLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ 65 (125)
Q Consensus 23 ~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~ 65 (125)
|..+-|.||.+.+ ..|..++..|..+|..|..++.....
T Consensus 13 AA~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 13 AAAKCRNRRRELT----DTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566688887766 78999999999999999999877653
No 6
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=89.11 E-value=2.1 Score=25.34 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620 22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ 65 (125)
Q Consensus 22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~ 65 (125)
.|..+-|.||.+.+ ..|..++..|..+|..|..++.....
T Consensus 11 ~AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 11 IAASKSRKRKLERI----ARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888887776 89999999999999999999877653
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=87.90 E-value=2.8 Score=25.01 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620 22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ 65 (125)
Q Consensus 22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~ 65 (125)
.|..+-|.||..-+ ..+..++..|..+|..|..++...+.
T Consensus 12 ~AA~R~R~KKk~~~----~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 12 TAATRYRQKKRAEQ----EALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677787776554 78889999999999999999887654
No 8
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=84.05 E-value=1.7 Score=27.16 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHH
Q 047620 33 QVLTDEIKELNRKGNLLHQENLELHK 58 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L~~ 58 (125)
+++.++|.+|..|...|+.||..|+.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888877754
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=78.01 E-value=11 Score=24.08 Aligned_cols=40 Identities=28% Similarity=0.232 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620 22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ 65 (125)
Q Consensus 22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~ 65 (125)
.|+.+=|.++...- ..+..++..|+.+|..|..++.....
T Consensus 25 ~AarrSR~krk~r~----~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 25 IAVRKSRDKAKMRN----LETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665554433 56678888999999999999987764
No 10
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=76.78 E-value=11 Score=23.47 Aligned_cols=40 Identities=28% Similarity=0.232 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620 22 MSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ 65 (125)
Q Consensus 22 ~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~ 65 (125)
.|+.+-|.++.... ..+..++..|..+|..|..++.....
T Consensus 25 ~AakrSR~krk~r~----~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 25 IAVRKSRDKAKMRN----LETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666654443 56778899999999999999987754
No 11
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.64 E-value=11 Score=23.30 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 13 LQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 13 L~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
+..|+..|......||.+... |+.+.+.......+.+.|+.++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999886543 47777777777778888877765
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.97 E-value=8 Score=21.42 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 35 LTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 35 ~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
+......|..|+..|+.||..|+..+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 33445677778888888888887654
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.34 E-value=7.6 Score=22.40 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 33 QVLTDEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
..+..+...|+.|+..|.+++..|+.++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555667777777777777777776653
No 14
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=65.24 E-value=33 Score=24.13 Aligned_cols=47 Identities=23% Similarity=0.173 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHH
Q 047620 9 NVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELH 57 (125)
Q Consensus 9 s~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~ 57 (125)
|..|...||..-..-..+|+.||.+|- ++.....=.++|.+.|+.+.
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~Lq--eL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999988876653 22222233455666666554
No 15
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=65.04 E-value=12 Score=19.80 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHh
Q 047620 29 LKKDQVLTDEIKELNRKGNLLHQEN 53 (125)
Q Consensus 29 ~rK~~l~~~~i~~lkkk~~~l~een 53 (125)
.||..-....|+.+|++...|+++-
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 3677777777777777666665554
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=63.66 E-value=28 Score=22.78 Aligned_cols=56 Identities=27% Similarity=0.356 Sum_probs=36.8
Q ss_pred CCCCCCHHHHH----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 4 ELSGLNVKDLQ----NLENQLEMSLKGV---RLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 4 dL~~Ls~~eL~----~LE~~Le~~l~~V---R~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
.|.+||-.||. .||..++.+-..- |..- .-...+|..|..++..|..+|..|..+-
T Consensus 26 rL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~-~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 26 SLQNMSKQELIKEYLELEKSLSRMEDENNRLRLES-KRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667766654 6888877763322 2221 1225678888888888999998887653
No 17
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=63.19 E-value=17 Score=26.40 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 24 LKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 24 l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
-..|..||.+++ +.+++|...|+++-..|...+..+.
T Consensus 10 ~~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~N~ 46 (190)
T 3thf_A 10 TNLIKQKMDELI----KHLNQKIVSLKREQQTISEECSAND 46 (190)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999998 8999999999999888888776554
No 18
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=62.07 E-value=28 Score=22.15 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 047620 15 NLENQLEMSLKGVR 28 (125)
Q Consensus 15 ~LE~~Le~~l~~VR 28 (125)
.|=..|-.-|.+||
T Consensus 13 ~LNdRlAsyIdKVR 26 (93)
T 3s4r_A 13 ELNDRFANLIDKVR 26 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.29 E-value=45 Score=30.10 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=18.3
Q ss_pred HHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 40 KELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 40 ~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
+.++.|+..|+++|..|+.++++.+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888888776654
No 20
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=58.79 E-value=28 Score=21.15 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHhHHHHHHHHHH
Q 047620 21 EMSLKGVRLKKDQVLTDEIKELNRKGNLL-------HQENLELHKKVNLI 63 (125)
Q Consensus 21 e~~l~~VR~rK~~l~~~~i~~lkkk~~~l-------~een~~L~~~l~~~ 63 (125)
-.|=...|.||.+-| ..|..++..| ..+|..|+..+...
T Consensus 17 R~AQRafReRK~~~i----~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 17 RAAQRAFRKRKEDHL----KALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667899998766 4445555444 45555555554443
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.00 E-value=66 Score=25.96 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=9.1
Q ss_pred HHHHHHhhhHHHHhHHHHHHHH
Q 047620 40 KELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 40 ~~lkkk~~~l~een~~L~~~l~ 61 (125)
+..+++...+.+++..+..++.
T Consensus 554 ~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 554 DNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443
No 22
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=57.66 E-value=43 Score=22.91 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=28.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 4 ELSGLNVKDLQNLENQLEMSLKGVRLKKDQVL 35 (125)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~ 35 (125)
+|++|+.++|+.+=+.|-..+..+=+-|+.+-
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 68999999999999999999999988888765
No 23
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.37 E-value=18 Score=23.61 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 37 DEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 37 ~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
+++..+++++..|..||..|+..+...+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668888888999999999988887765
No 24
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=56.09 E-value=17 Score=19.53 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhHHHHhHHHHH
Q 047620 37 DEIKELNRKGNLLHQENLELHK 58 (125)
Q Consensus 37 ~~i~~lkkk~~~l~een~~L~~ 58 (125)
+||..+++|...|++|.-.|..
T Consensus 15 eQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888887766543
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.08 E-value=45 Score=22.70 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 12 DLQNLENQLEMSLKGVRLKKDQVLTD--EIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 12 eL~~LE~~Le~~l~~VR~rK~~l~~~--~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+...|+++++.--..+=+=|.+++.. +++.++++...+.+++..|..++...
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666665555555566665533 33455566666666666666655544
No 26
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=55.44 E-value=30 Score=20.54 Aligned_cols=52 Identities=29% Similarity=0.451 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHhHHHH
Q 047620 6 SGLNVKDLQNLENQLEMSLKGVRL--KKDQVLTDEIKELNRKGNLLHQENLELH 57 (125)
Q Consensus 6 ~~Ls~~eL~~LE~~Le~~l~~VR~--rK~~l~~~~i~~lkkk~~~l~een~~L~ 57 (125)
+..++.|-..+-+.|-.|=.+|-. +=..-+.+++..+++++..|+.||..|+
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 356888888888888777666632 1112345566667777777777777665
No 27
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=49.54 E-value=16 Score=21.82 Aligned_cols=42 Identities=12% Similarity=0.257 Sum_probs=27.9
Q ss_pred CCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 4 ELSGLNVKD----LQNLENQLEMSLKGVRLKKDQVLTDEIKELNRK 45 (125)
Q Consensus 4 dL~~Ls~~e----L~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk 45 (125)
+...++.++ +..|+..|..|.....--+-..+.++|..++++
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 445555333 566788888888777777776777777766654
No 28
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=48.92 E-value=61 Score=23.29 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=28.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 4 ELSGLNVKDLQNLENQLEMSLKGVRLKKDQVL 35 (125)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~ 35 (125)
+|++|+..+|+.+=+.|-..+..+=+-|+.+-
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 68899999999999999999999988888765
No 29
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.23 E-value=52 Score=20.82 Aligned_cols=32 Identities=16% Similarity=0.356 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 33 QVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
.++..+|..+++++..+..++..|..++....
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999998888888888877776543
No 30
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=46.93 E-value=35 Score=18.72 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 047620 6 SGLNVKDLQNLENQLEMSLKGV 27 (125)
Q Consensus 6 ~~Ls~~eL~~LE~~Le~~l~~V 27 (125)
+++|.+||..||..|+.--+++
T Consensus 15 egfspeelaaleselqalekkl 36 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 4688999999998876543333
No 31
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=45.00 E-value=35 Score=18.28 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 37 DEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 37 ~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
+..-..-.|++.|+.+|+.|..++.
T Consensus 13 drlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 13 DRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445678889999999987753
No 32
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=44.79 E-value=63 Score=21.13 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 4 ELSGLNVKDLQNLENQLEMSLKGVRLKKDQVL 35 (125)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~ 35 (125)
+|++|+.++|+.+=+.|-..+..+=+-|+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 46889999999999999888888888887765
No 33
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.51 E-value=72 Score=21.38 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 7 GLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 7 ~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
+++++++..+=.....+-..+.. ...++.+++..+.++...|+.....|..++...+
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~-~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEA-RAELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777665443332222222 2346667777777777777777777776665443
No 34
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=43.19 E-value=45 Score=18.94 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHH
Q 047620 33 QVLTDEIKELNRKGNLLHQENLEL 56 (125)
Q Consensus 33 ~l~~~~i~~lkkk~~~l~een~~L 56 (125)
+-+...+...+++++.|+++|-=|
T Consensus 17 eeler~lrk~kk~iKklEdeNPWL 40 (50)
T 1a92_A 17 EELERDLRKLKKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHhhhccCCch
Confidence 344555666777777777777544
No 35
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=41.11 E-value=74 Score=20.83 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=27.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 4 ELSGLNVKDLQNLENQLEMSLKGVRLKKDQVL 35 (125)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~ 35 (125)
+|++|+.++|+.+=+.|-..+..+=+-|+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 68889999999999999999888888887664
No 36
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.26 E-value=55 Score=19.11 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 31 KDQVLTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 31 K~~l~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
+.+-+..+...|+.++..|..|+..|..-|
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566777777777888877776554
No 37
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.56 E-value=56 Score=18.74 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 32 DQVLTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 32 ~~l~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
...+..+...|+.++..|.+++..|...+
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666666777766665443
No 38
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=36.89 E-value=18 Score=19.18 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 37 DEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 37 ~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
+.|+.+|+|++.|+.+...+...+..
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~ 29 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVAR 29 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888877777666655543
No 39
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=36.30 E-value=27 Score=17.49 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q 047620 11 KDLQNLENQLEMSLK 25 (125)
Q Consensus 11 ~eL~~LE~~Le~~l~ 25 (125)
.|+..||.++..||.
T Consensus 13 qeikelennirkals 27 (31)
T 2wh0_Q 13 QEIKELENNIRKALS 27 (31)
T ss_pred HHHHHHHHHHHHHhc
Confidence 578888888887764
No 40
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=35.55 E-value=74 Score=19.24 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=8.7
Q ss_pred HHHHHhhhHHHHhHHHHHHH
Q 047620 41 ELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 41 ~lkkk~~~l~een~~L~~~l 60 (125)
.++.....|..+|..|..++
T Consensus 58 ~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 58 THQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 41
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.07 E-value=43 Score=16.38 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=5.5
Q ss_pred HHHHhHHHHHHHH
Q 047620 49 LHQENLELHKKVN 61 (125)
Q Consensus 49 l~een~~L~~~l~ 61 (125)
|.+.|..|..+++
T Consensus 5 lkqknarlkqeia 17 (28)
T 3ra3_B 5 LKQKNARLKQEIA 17 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHH
Confidence 3344444444443
No 42
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=34.91 E-value=46 Score=19.07 Aligned_cols=11 Identities=45% Similarity=0.640 Sum_probs=7.4
Q ss_pred CCCCCHHHHHH
Q 047620 5 LSGLNVKDLQN 15 (125)
Q Consensus 5 L~~Ls~~eL~~ 15 (125)
|..||++||.+
T Consensus 7 Lk~ls~eEL~~ 17 (51)
T 2jo8_A 7 LKSWTVEDLQK 17 (51)
T ss_dssp GGGSCHHHHHH
T ss_pred HHhCCHHHHHH
Confidence 44568888764
No 43
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.61 E-value=59 Score=17.85 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=8.0
Q ss_pred HHHHHHHHhhhHHHH
Q 047620 38 EIKELNRKGNLLHQE 52 (125)
Q Consensus 38 ~i~~lkkk~~~l~ee 52 (125)
+|..+++|.+.|++.
T Consensus 24 kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 24 QISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 445556665555543
No 44
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=34.25 E-value=1.5e+02 Score=22.28 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhH
Q 047620 7 GLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLINQ 65 (125)
Q Consensus 7 ~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~~~ 65 (125)
+.|+..|..+=..+..-+.-+=-|| .+...+|..+-.|+..|....+.+..+|+..++
T Consensus 148 SYSl~~Lkk~~~~i~~~LelL~IRK-~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEq 205 (242)
T 3uux_B 148 SYSPSALKSFSQTLVNSLEFLNIQK-NSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQ 205 (242)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678888888888888777776666 677889999999999999888888888876653
No 45
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=32.93 E-value=92 Score=19.55 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhHHHHhHHHH
Q 047620 34 VLTDEIKELNRKGNLLHQENLELH 57 (125)
Q Consensus 34 l~~~~i~~lkkk~~~l~een~~L~ 57 (125)
+...+|+.++++++.+.++-..|+
T Consensus 72 ~ykreie~l~~~ekeime~ls~l~ 95 (99)
T 3aei_A 72 VYKREIEKLKKREKEIMEELSKLR 95 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567788899988887777655543
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.73 E-value=1.4e+02 Score=23.50 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 20 LEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 20 Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
+...+...|.+..+.+ +..+..+..+.++|..+...+.+.
T Consensus 422 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDW----DMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhh----hhhhhHHHHHHHHhhhhhhhhhhh
Confidence 3344444555444433 344455555556666665555443
No 47
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.18 E-value=1.1e+02 Score=20.40 Aligned_cols=54 Identities=4% Similarity=0.067 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 7 GLNVKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 7 ~Ls~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
+++++++..+=.....+-..+.. -..++..++..+.++...|+..-..|..++.
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIA 126 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677666654432222112211 2245666667777777766666666666554
No 48
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=30.88 E-value=91 Score=18.86 Aligned_cols=37 Identities=16% Similarity=0.037 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 27 VRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 27 VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
...+|++.|..+.+++......++.|...-..++...
T Consensus 6 aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdi 42 (75)
T 3mtu_A 6 AIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNI 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4578888899999999888888888777665666544
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.69 E-value=1e+02 Score=19.27 Aligned_cols=33 Identities=27% Similarity=0.195 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 30 KKDQVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 30 rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
.|.+-..+.|.-|+-.+..|.++|..|..+..+
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777788888888888777665
No 50
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=30.27 E-value=95 Score=18.89 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=16.9
Q ss_pred HHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 39 IKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 39 i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
|..|+..+..|.+++..|...+...
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456667777888888887766543
No 51
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=30.03 E-value=60 Score=23.45 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhHHHHhHHHHHH
Q 047620 36 TDEIKELNRKGNLLHQENLELHKK 59 (125)
Q Consensus 36 ~~~i~~lkkk~~~l~een~~L~~~ 59 (125)
..+|..++.+...|++||..|..+
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788888888999999988764
No 52
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.74 E-value=1.2e+02 Score=22.80 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhhHHHHhHHHHHHHHHHh
Q 047620 34 VLTDEIKELNRKGNLLHQENLELHKKVNLIN 64 (125)
Q Consensus 34 l~~~~i~~lkkk~~~l~een~~L~~~l~~~~ 64 (125)
-+..++..+..|...|.++-+.++.++....
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lk 88 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALR 88 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555443
No 53
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes serotype 4B}
Probab=28.25 E-value=19 Score=29.41 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=15.6
Q ss_pred ccccCCCCCCCcccccCCCCC
Q 047620 91 YTISNGYDMHPPLHLQLSQPQ 111 (125)
Q Consensus 91 ~~~~~~~~~~~~~~Lq~~qpn 111 (125)
+..+.+.+..+.+||||+||-
T Consensus 148 ~rtTIGl~G~ls~RlQPNhPT 168 (455)
T 2qez_A 148 ANTTIGLPGTFSARLQPNHPT 168 (455)
T ss_dssp SSSEECCTTBCBCEECCCCTT
T ss_pred CCcccCCCCceecccCCCCCC
Confidence 334445677889999999983
No 54
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=28.02 E-value=64 Score=16.78 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=12.2
Q ss_pred HHHHHhhhHHHHhHHHHHHHH
Q 047620 41 ELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 41 ~lkkk~~~l~een~~L~~~l~ 61 (125)
.|..|+..|..+|..|..++.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 344566666666666665544
No 55
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.96 E-value=90 Score=17.86 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=12.4
Q ss_pred HHhhhHHHHhHHHHHHHHHH
Q 047620 44 RKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 44 kk~~~l~een~~L~~~l~~~ 63 (125)
+.+..|..||..|++++..+
T Consensus 10 ~QVe~Lk~ENshLrrEL~dN 29 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDN 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhh
Confidence 34445566777777777654
No 56
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=27.67 E-value=64 Score=18.37 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=5.1
Q ss_pred HhhhHHHHhHHH
Q 047620 45 KGNLLHQENLEL 56 (125)
Q Consensus 45 k~~~l~een~~L 56 (125)
+++.|++....|
T Consensus 20 ~ErELEeAr~~L 31 (50)
T 2qdq_A 20 KERELEEARKKL 31 (50)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 57
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=27.50 E-value=1.1e+02 Score=19.03 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 34 VLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 34 l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
.+..+|+.++..+..|.++|..|.....+
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556676677777788888777654443
No 58
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=27.37 E-value=88 Score=17.59 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 047620 16 LENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQEN 53 (125)
Q Consensus 16 LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een 53 (125)
|++|...-=.-|+.-|..-=.+++.+|++..+.|..|-
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444455666666655555443
No 59
>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_A* 3abr_A* 3abs_A* 3any_A* 3ao0_A*
Probab=26.92 E-value=19 Score=29.42 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=15.6
Q ss_pred ccccCCCCCCCcccccCCCCC
Q 047620 91 YTISNGYDMHPPLHLQLSQPQ 111 (125)
Q Consensus 91 ~~~~~~~~~~~~~~Lq~~qpn 111 (125)
+..+.+.+..+.+||||+||-
T Consensus 147 ~rtTIGl~G~ls~RlQPNhPT 167 (453)
T 3abq_A 147 ANTTIGIPGTFSARLQPNDTR 167 (453)
T ss_dssp SSSEECCTTBCEEEECCCCTT
T ss_pred CCcccCCCCceecccCCCCCC
Confidence 334445677889999999983
No 60
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=26.45 E-value=1.2e+02 Score=21.78 Aligned_cols=29 Identities=31% Similarity=0.300 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 35 LTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 35 ~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
.++.+..|+.+...|+++|..|..+....
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999998876543
No 61
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=26.38 E-value=1.7e+02 Score=20.42 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH-------HHHHHHhhhHHHHhHHHHHHHHH
Q 047620 11 KDLQNLENQLEMSLKGVRLKKDQ---------VLTDEI-------KELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 11 ~eL~~LE~~Le~~l~~VR~rK~~---------l~~~~i-------~~lkkk~~~l~een~~L~~~l~~ 62 (125)
..+..|+..+...-.+|+.++.. .+..++ ..+..|.+.+++||..|-.....
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766633 223332 34456666777777666554443
No 62
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=26.14 E-value=1.3e+02 Score=18.93 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhHHHHhHHHH
Q 047620 36 TDEIKELNRKGNLLHQENLELH 57 (125)
Q Consensus 36 ~~~i~~lkkk~~~l~een~~L~ 57 (125)
..+|+.++..+..++++|..|+
T Consensus 52 h~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 52 HKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555444
No 63
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.17 E-value=3.8e+02 Score=24.13 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 047620 12 DLQNLENQLEMSLKGV 27 (125)
Q Consensus 12 eL~~LE~~Le~~l~~V 27 (125)
+|..+|..++.+-.+|
T Consensus 971 ~le~~~~e~~~~~~~v 986 (1080)
T 2dfs_A 971 RLRMSEEEAKNATNRV 986 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444333333
No 64
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.65 E-value=84 Score=16.41 Aligned_cols=21 Identities=29% Similarity=0.291 Sum_probs=11.3
Q ss_pred HHHHHhhhHHHHhHHHHHHHH
Q 047620 41 ELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 41 ~lkkk~~~l~een~~L~~~l~ 61 (125)
.|..|+..|-.+|..|..++.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHH
Confidence 344555555666665555443
No 65
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.19 E-value=1.8e+02 Score=19.62 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 11 KDLQNLENQLEMSLKGVRLKKDQV--LTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 11 ~eL~~LE~~Le~~l~~VR~rK~~l--~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
.||..+....+.--..+-..+.++ +..++..++-+...+..++..|..++...
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556555555555554433332 22233333333333444444444444433
No 66
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.03 E-value=2.2e+02 Score=20.69 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 047620 9 NVKDLQNLENQLEMSLKGVRLKKDQVL--TDEIKELNR 44 (125)
Q Consensus 9 s~~eL~~LE~~Le~~l~~VR~rK~~l~--~~~i~~lkk 44 (125)
+.+|+..|.+.++.+-.++...-.+++ +++++.++.
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE 125 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777766666655544433 344443333
No 67
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.20 E-value=3.1e+02 Score=22.00 Aligned_cols=20 Identities=5% Similarity=0.126 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047620 14 QNLENQLEMSLKGVRLKKDQ 33 (125)
Q Consensus 14 ~~LE~~Le~~l~~VR~rK~~ 33 (125)
..-|+.+...+..+|.+...
T Consensus 59 dk~er~~~~rIe~L~~~L~~ 78 (390)
T 1deq_A 59 DEVDQDFTSRINKLRDSLFN 78 (390)
T ss_pred HHhhhhHHHHHHHHHHHHHH
Confidence 34455555555555554443
No 68
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.99 E-value=94 Score=20.03 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhHHHHhHHH
Q 047620 35 LTDEIKELNRKGNLLHQENLEL 56 (125)
Q Consensus 35 ~~~~i~~lkkk~~~l~een~~L 56 (125)
+..++..++++.+.++++...|
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L 33 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARL 33 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555544444444443
No 69
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=21.59 E-value=1.4e+02 Score=17.98 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHH
Q 047620 15 NLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLEL 56 (125)
Q Consensus 15 ~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L 56 (125)
-|.+|+..-=.-|+.-|..-=.+++.+|+...+.|+++-..+
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555665555555667777777777666655443
No 70
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=21.03 E-value=1.4e+02 Score=18.07 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 047620 7 GLNVKDLQNLENQLEMSLKGVRLK 30 (125)
Q Consensus 7 ~Ls~~eL~~LE~~Le~~l~~VR~r 30 (125)
.|+..++..+-+-|...|.+||.|
T Consensus 3 ~ls~~~~e~ir~IL~~NLykiRqr 26 (70)
T 2ygg_A 3 ALSKDKEEEIRKILRNNLQKTRQR 26 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 378889999999999999999965
No 71
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.94 E-value=1.1e+02 Score=20.55 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 10 VKDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 10 ~~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
++.+...+..|......+...-. -+.+.|+.+....+.++.+...|+.++...
T Consensus 6 ~~~~~~~~~~l~~~a~~Lk~~~~-~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 6 IEAVEEMERLLREASSILRVEPA-KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp THHHHHHHHHHHHHHHTTTCCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666655555543322 334556666666666666666666665443
No 72
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=20.67 E-value=1.9e+02 Score=19.09 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 047620 11 KDLQNLENQLEMS 23 (125)
Q Consensus 11 ~eL~~LE~~Le~~ 23 (125)
+|+..|+.+++.+
T Consensus 4 ~e~~~l~~qi~~~ 16 (123)
T 4dzo_A 4 KEVAELKKQVESA 16 (123)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444454444444
No 73
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.61 E-value=1.1e+02 Score=20.60 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Q 047620 18 NQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNLI 63 (125)
Q Consensus 18 ~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~~ 63 (125)
..++.|+.-+.. |.+.+..+++.+.+....+.+.-..+...+...
T Consensus 94 ~~~~eA~~~l~~-ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 94 RSIDEAISFLEK-RLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp EEHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ecHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666644 445666677777776666666665555555443
No 74
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=20.53 E-value=1.5e+02 Score=17.85 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 7 GLNVKDLQNLENQLEMSLK-GVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 7 ~Ls~~eL~~LE~~Le~~l~-~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
++|++|+..+=.....+-. .+ ..-..++..++..+.++...|+..-..|...+.
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788887776432221100 11 112245566666666666666666555655443
No 75
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.43 E-value=1.7e+02 Score=18.30 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Q 047620 20 LEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVNL 62 (125)
Q Consensus 20 Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~~ 62 (125)
++.++..+-.|+ +.+...|+.+.++...+..+-..|...+..
T Consensus 68 ~~ea~~~L~~~~-e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 68 KDKAVAELKEKI-ETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665555 334667777777777766666666655543
No 76
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.37 E-value=1.6e+02 Score=18.10 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHH
Q 047620 20 LEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 20 Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l 60 (125)
++.+...+-.++ +.+...|+.+.++...+..+-..|...+
T Consensus 63 ~~e~~~~L~~~~-e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 63 KDELTEELQEKL-ETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554 3445666666666666666555555443
No 77
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=20.17 E-value=1.3e+02 Score=16.95 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 047620 31 KDQVLTDEIKELNRKG 46 (125)
Q Consensus 31 K~~l~~~~i~~lkkk~ 46 (125)
|++++.+.|..++++.
T Consensus 26 kEqlY~ERl~ql~~~L 41 (49)
T 2xus_A 26 KEKLFRERLSQLRLRL 41 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554443
Done!