Query 047620
Match_columns 125
No_of_seqs 155 out of 1262
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 23:05:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047620.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047620hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e52a_ a.2.9.1 (A:) C-termina 51.3 8.7 0.00063 21.0 3.4 39 7-45 9-51 (56)
2 d2azea1 e.63.1.1 (A:199-346) T 47.4 32 0.0024 22.3 7.6 44 11-56 2-45 (148)
3 d1uklc_ a.38.1.1 (C:) SREBP-2 34.6 31 0.0022 18.5 4.1 22 39-60 35-56 (61)
4 d1r8ea1 a.6.1.3 (A:3-120) Tran 30.4 50 0.0036 19.5 6.4 10 7-16 61-70 (118)
5 d2zjrv1 a.2.2.1 (V:1-66) Ribos 29.7 38 0.0028 18.6 3.9 29 3-31 4-32 (66)
6 d1nlwa_ a.38.1.1 (A:) Mad prot 25.8 52 0.0038 18.2 5.7 10 49-58 66-75 (79)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 24.5 59 0.0043 18.3 6.4 11 49-59 71-81 (88)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 24.0 66 0.0048 18.8 6.4 41 20-61 63-103 (107)
9 d1nkpb_ a.38.1.1 (B:) Max prot 22.3 64 0.0046 18.0 5.9 12 48-59 65-76 (83)
10 d1r73a_ a.2.2.1 (A:) Ribosomal 19.1 26 0.0019 19.4 1.6 28 4-31 5-32 (66)
No 1
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=51.25 E-value=8.7 Score=21.04 Aligned_cols=39 Identities=13% Similarity=0.325 Sum_probs=28.0
Q ss_pred CCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047620 7 GLNVKD----LQNLENQLEMSLKGVRLKKDQVLTDEIKELNRK 45 (125)
Q Consensus 7 ~Ls~~e----L~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk 45 (125)
++|.++ +..||++|..|.....--|--.+-++|..+++.
T Consensus 9 ~ls~~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~ 51 (56)
T d1e52a_ 9 DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 51 (56)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 455555 778888888888877777776777777777664
No 2
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.40 E-value=32 Score=22.30 Aligned_cols=44 Identities=25% Similarity=0.204 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHH
Q 047620 11 KDLQNLENQLEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLEL 56 (125)
Q Consensus 11 ~eL~~LE~~Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L 56 (125)
.|...||........+|+.|+.++- ++.....=.++|.+.|+.+
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~Lq--eLi~Q~iafknLV~RN~~~ 45 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHA 45 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHH
Confidence 5778899999999999988887653 2222222345566666544
No 3
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.63 E-value=31 Score=18.49 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=14.2
Q ss_pred HHHHHHHhhhHHHHhHHHHHHH
Q 047620 39 IKELNRKGNLLHQENLELHKKV 60 (125)
Q Consensus 39 i~~lkkk~~~l~een~~L~~~l 60 (125)
|..|++++..|.+++..|+...
T Consensus 35 I~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 35 IKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777776543
No 4
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=30.39 E-value=50 Score=19.46 Aligned_cols=10 Identities=10% Similarity=0.468 Sum_probs=5.7
Q ss_pred CCCHHHHHHH
Q 047620 7 GLNVKDLQNL 16 (125)
Q Consensus 7 ~Ls~~eL~~L 16 (125)
++|++++..+
T Consensus 61 g~sl~eIk~~ 70 (118)
T d1r8ea1 61 GTPLEEMKKA 70 (118)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4666666544
No 5
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=29.67 E-value=38 Score=18.58 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=24.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047620 3 EELSGLNVKDLQNLENQLEMSLKGVRLKK 31 (125)
Q Consensus 3 edL~~Ls~~eL~~LE~~Le~~l~~VR~rK 31 (125)
.||-.+|.+||...-..+...+-..|-.+
T Consensus 4 ~elr~~s~~eL~~~l~~lk~elf~LRfq~ 32 (66)
T d2zjrv1 4 SEMRNLQATDFAKEIDARKKELMELRFQA 32 (66)
T ss_dssp TTTTTSCHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999888888888654
No 6
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.77 E-value=52 Score=18.18 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=3.9
Q ss_pred HHHHhHHHHH
Q 047620 49 LHQENLELHK 58 (125)
Q Consensus 49 l~een~~L~~ 58 (125)
|..++..|..
T Consensus 66 L~~~~~~L~~ 75 (79)
T d1nlwa_ 66 LQREQRHLKR 75 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333434433
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.45 E-value=59 Score=18.34 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=4.3
Q ss_pred HHHHhHHHHHH
Q 047620 49 LHQENLELHKK 59 (125)
Q Consensus 49 l~een~~L~~~ 59 (125)
+..++..|..+
T Consensus 71 l~~~~~~L~~~ 81 (88)
T d1nkpa_ 71 LRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344344333
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.04 E-value=66 Score=18.80 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHH
Q 047620 20 LEMSLKGVRLKKDQVLTDEIKELNRKGNLLHQENLELHKKVN 61 (125)
Q Consensus 20 Le~~l~~VR~rK~~l~~~~i~~lkkk~~~l~een~~L~~~l~ 61 (125)
.+.++..+..+ ...|...|+.+.+.+..+.++-..+..++.
T Consensus 63 ~~e~~~~l~~~-~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 63 KDELTEELQEK-LETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333 355666677777777766666666665553
No 9
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.29 E-value=64 Score=17.95 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=4.7
Q ss_pred hHHHHhHHHHHH
Q 047620 48 LLHQENLELHKK 59 (125)
Q Consensus 48 ~l~een~~L~~~ 59 (125)
.+..++..|..+
T Consensus 65 ~l~~~~~~L~~~ 76 (83)
T d1nkpb_ 65 DLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 10
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=19.06 E-value=26 Score=19.38 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=21.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047620 4 ELSGLNVKDLQNLENQLEMSLKGVRLKK 31 (125)
Q Consensus 4 dL~~Ls~~eL~~LE~~Le~~l~~VR~rK 31 (125)
||-++|.+||...-..+...+-..|-.+
T Consensus 5 elr~ls~~eL~~~l~~l~~el~~LRfq~ 32 (66)
T d1r73a_ 5 ELRNYTDEELKNLLEEKKRQLMELRFQL 32 (66)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888887777654
Done!