BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047621
(550 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 166/413 (40%), Gaps = 97/413 (23%)
Query: 63 RVGDLVKRLTLQEKITFL----------VDSAGSVSRLGIPKYEWWSEALHGVSYVGPGT 112
R +LV ++TL EKI+F+ V V RLGIP+ ++ +G+ VG
Sbjct: 53 RAAELVAQMTLDEKISFVHWALDPDRQNVGYLPGVPRLGIPELRA-ADGPNGIRLVGQT- 110
Query: 113 HFSNVVPGATSFPQVILTAASFNASLFQAIGKVVSTEARAMYNVGLAGLTFWSPNINIFR 172
AT+ P + A++F+ ++ + GKV+ + RA+ + G P +N R
Sbjct: 111 --------ATALPAPVALASTFDDTMADSYGKVMGRDGRALNQDMVLG-----PMMNNIR 157
Query: 173 DPRWGRGQETPGEDPLLASKYATGYVKGLQQTDGGSPNRLKVAACCKHYTAYDLDNWKGT 232
P GR ET EDPL++S+ A +KG+Q + KH+ A + +N
Sbjct: 158 VPHGGRNYETFSEDPLVSSRTAVAQIKGIQGAG--------LMTTAKHFAANNQEN---- 205
Query: 233 DRYHFNAMV-IYTYYLIKFKYIVS--------------------DCDSVDVLYN------ 265
+R+ NA V T I+F + C + ++L N
Sbjct: 206 NRFSVNANVDEQTLREIEFPAFEASSKAGAASFMCAYNGLNGKPSCGNDELLNNVLRTQW 265
Query: 266 ------SQHYTKTPEEAAAKSILAGLDLNCG----------------SFLGKHTEAAVKA 303
+ TP +I GLD G F G+ + AV
Sbjct: 266 GFQGWVMSDWLATP---GTDAITKGLDQEMGVELPGDVPKGEPSPPAKFFGEALKTAVLN 322
Query: 304 GLVNESAIDHAISNNFATLMRLGFFDGHPSKQPYGQLGPKDVCTQANQDLALDAARQGIV 363
G V E+A+ + + + G P+ +P +D Q ++ A G V
Sbjct: 323 GTVPEAAVTRSAERIVGQMEKFGLLLATPAPRPE-----RDKA--GAQAVSRKVAENGAV 375
Query: 364 LLKNTAGSLPLSPTAIKNLAVIGPNANVTK-TMIGNYEGTPCKYTTPLQGLAA 415
LL+N +LPL+ A K++AVIGP A K T +G+ P PL + A
Sbjct: 376 LLRNEGQALPLAGDAGKSIAVIGPTAVDPKVTGLGSAHVVPDSAAAPLDTIKA 428
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 509 KITSILWVGYPGQAGGAAIADVCFGRYNPSGRL 541
K ++L + YPGQAG A A + +G NPSG+L
Sbjct: 623 KTRAVLDMWYPGQAGAEATAALLYGDVNPSGKL 655
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 148/594 (24%), Positives = 219/594 (36%), Gaps = 140/594 (23%)
Query: 60 IDLRVGDLVKRLTLQEKIT---------------------FLVDSAGSVSRLGIPKYEWW 98
++ RV DL+ R+TL EKI L+ GSV R G EW
Sbjct: 12 VEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEWQ 71
Query: 99 SEA----------------LHGVSYVGPGTHFSNVVPGATSFPQVILTAASFNASLFQAI 142
++G+ V H N V GAT FP + A+ + L + I
Sbjct: 72 DMVDGFQKACMSTRLGIPMIYGIDAV----HGQNNVYGATIFPHNVGLGATRDPYLVKRI 127
Query: 143 GKVVSTEARAMYNVGLAGLTF-WSPNINIFRDPRWGRGQETPGEDPLLASKYATGYVKGL 201
G+ + E RA G+ + ++P I + RDPRWGR E+ ED + T + GL
Sbjct: 128 GEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSM-TELIPGL 180
Query: 202 Q-----QTDGGSP---NRLKVAACCKHYT---------------------------AY-- 224
Q G P + KVAAC KH+ AY
Sbjct: 181 QGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKN 240
Query: 225 -----------DLDNWKGTDRYHFNAMVIYTYY--LIKFK-YIVSDCDSVDVLYNSQHYT 270
+W G + H N ++ Y +KFK +++SD + +D +
Sbjct: 241 AMDKGVSTVMISYSSWNGV-KMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSD 299
Query: 271 KTPEEAAAKSILAGLDL--------NCGSFLGKHTEAAVKAGLVNESAIDHAISNNFATL 322
+ A SILAGLD+ S L H V G++ S ID A++
Sbjct: 300 YSYSVKA--SILAGLDMIMVPNKYQQFISILTGH----VNGGVIPMSRIDDAVTRILRVK 353
Query: 323 MRLGFFDGHPSKQP--YGQLGPKDVCTQANQDLALDAARQGIVLLKN--TAGSLPLSPTA 378
+G F+ +P P QLG Q ++DLA +AAR+ +VLLKN T+ PL P
Sbjct: 354 FTMGLFE-NPYADPAMAEQLG-----KQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLP 407
Query: 379 IK--NLAVIGPNANVTKTMIG----NYEGTPCKYTTPLQGLAAVVATIYQAGCSNVQCGT 432
K + V G +A+ G ++G + T L AV A + S V
Sbjct: 408 KKAPKILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAV---DPSTVVVFA 464
Query: 433 AQVXXXXXXXXXXXXTVLVMGADQSIEAESHDRXXXXXXXXXXXXITEVAKVAKGPVILI 492
++ +G E + D + V + +LI
Sbjct: 465 ENPDAEFVKSGGFSYAIVAVGEHPYTETKG-DNLNLTIPEPGLSTVQAVCGGVRCATVLI 523
Query: 493 IMSGGGFDISFAKNDPKITSILWVGYPGQAGGAAIADVCFGRYNPSGRLPMTWY 546
A +D + + L PG G + D FG + +GRLP TW+
Sbjct: 524 SGRPVVVQPLLAASDALVAAWL----PGSE-GQGVTDALFGDFGFTGRLPRTWF 572
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 148/594 (24%), Positives = 219/594 (36%), Gaps = 140/594 (23%)
Query: 60 IDLRVGDLVKRLTLQEKIT---------------------FLVDSAGSVSRLGIPKYEWW 98
++ RV DL+ R+TL EKI L+ GSV R G EW
Sbjct: 12 VEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEWQ 71
Query: 99 SEA----------------LHGVSYVGPGTHFSNVVPGATSFPQVILTAASFNASLFQAI 142
++G+ V H N V GAT FP + A+ + L + I
Sbjct: 72 DMVDGFQKACMSTRLGIPMIYGIDAV----HGQNNVYGATIFPHNVGLGATRDPYLVKRI 127
Query: 143 GKVVSTEARAMYNVGLAGLTF-WSPNINIFRDPRWGRGQETPGEDPLLASKYATGYVKGL 201
G+ + E RA G+ + ++P I + RDPRWGR E+ ED + T + GL
Sbjct: 128 GEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSM-TELIPGL 180
Query: 202 Q-----QTDGGSP---NRLKVAACCKHYT---------------------------AY-- 224
Q G P + KVAAC KH+ AY
Sbjct: 181 QGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKN 240
Query: 225 -----------DLDNWKGTDRYHFNAMVIYTYY--LIKFK-YIVSDCDSVDVLYNSQHYT 270
+W G + H N ++ Y +KFK +++SD + +D +
Sbjct: 241 AMDKGVSTVMISYSSWNGV-KMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSD 299
Query: 271 KTPEEAAAKSILAGLDL--------NCGSFLGKHTEAAVKAGLVNESAIDHAISNNFATL 322
+ A SILAGLD+ S L H V G++ S ID A++
Sbjct: 300 YSYSVKA--SILAGLDMIMVPNKYQQFISILTGH----VNGGVIPMSRIDDAVTRILRVK 353
Query: 323 MRLGFFDGHPSKQP--YGQLGPKDVCTQANQDLALDAARQGIVLLKN--TAGSLPLSPTA 378
+G F+ +P P QLG Q ++DLA +AAR+ +VLLKN T+ PL P
Sbjct: 354 FTMGLFE-NPYADPAMAEQLG-----KQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLP 407
Query: 379 IK--NLAVIGPNANVTKTMIG----NYEGTPCKYTTPLQGLAAVVATIYQAGCSNVQCGT 432
K + V G +A+ G ++G + T L AV A + S V
Sbjct: 408 KKAPKILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAV---DPSTVVVFA 464
Query: 433 AQVXXXXXXXXXXXXTVLVMGADQSIEAESHDRXXXXXXXXXXXXITEVAKVAKGPVILI 492
++ +G E + D + V + +LI
Sbjct: 465 ENPDAEFVKSGGFSYAIVAVGEHPYTETKG-DNLNLTIPEPGLSTVQAVCGGVRCATVLI 523
Query: 493 IMSGGGFDISFAKNDPKITSILWVGYPGQAGGAAIADVCFGRYNPSGRLPMTWY 546
A +D + + L PG G + D FG + +GRLP TW+
Sbjct: 524 SGRPVVVQPLLAASDALVAAWL----PGSE-GQGVTDALFGDFGFTGRLPRTWF 572
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 154/353 (43%), Gaps = 76/353 (21%)
Query: 97 WWSEALHGVSYVGPGTHFSNVVPGATSFPQVILTAASFNASLFQAIGKVVSTEARAMYNV 156
W ++A+HG SNV GAT FP I A+ + L + IG+ + E V
Sbjct: 107 WGTDAMHG---------HSNVY-GATLFPHNIGLGAARDTDLIKRIGQATAKE------V 150
Query: 157 GLAGLTF-WSPNINIFRDPRWGRGQETPGEDPLLASKYATGYVKGLQQTDGGS----PNR 211
G+ + ++P + + RD RWGR E+ EDP L +YA V G+Q G NR
Sbjct: 151 AATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNR 210
Query: 212 LKVAACCKHYTAYDLDNWKGTDR----------------YHFNAM------VIYTYYLIK 249
+ A KH+ D +G DR +F+A+ V+ ++
Sbjct: 211 I---ATAKHFVG-DGGTERGVDRGNTLIDEKGLRDIHSAGYFSAINQGVQSVMASFNSWN 266
Query: 250 FKYIVSDCDSV-DVL-------------YNSQHYTKTPE-EAAAKSILAGLDLNCGSFLG 294
K + D + DVL +N+ + + + E A++I AG+D+ +
Sbjct: 267 GKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFVEGCDLEQCAQAINAGVDV---IMVP 323
Query: 295 KHTEA-------AVKAGLVNESAIDHAISNNFATLMRLGFF-DGHPSKQPYGQLGPKDVC 346
+H EA VKAG++ ES I+ A+ +R G F PS +P Q P+ +
Sbjct: 324 EHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQ-HPQWLG 382
Query: 347 TQANQDLALDAARQGIVLLKNTAGSLPLSPTAIKNLAVIGPNANVTKTMIGNY 399
++ LA +A R+ +VLLKN LP+ ++ + V G AN G +
Sbjct: 383 AAEHRTLAREAVRKSLVLLKNNESILPIKASS--RILVAGKGANAINMQAGGW 433
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 154/353 (43%), Gaps = 76/353 (21%)
Query: 97 WWSEALHGVSYVGPGTHFSNVVPGATSFPQVILTAASFNASLFQAIGKVVSTEARAMYNV 156
W ++A+HG SNV GAT FP I A+ + L + IG+ + E V
Sbjct: 107 WGTDAMHG---------HSNVY-GATLFPHNIGLGAARDTDLIKRIGQATAKE------V 150
Query: 157 GLAGLTF-WSPNINIFRDPRWGRGQETPGEDPLLASKYATGYVKGLQQTDGGS----PNR 211
G+ + ++P + + RD RWGR E+ EDP L +YA V G+Q G NR
Sbjct: 151 AATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNR 210
Query: 212 LKVAACCKHYTAYDLDNWKGTDR----------------YHFNAM------VIYTYYLIK 249
+ A KH+ D +G DR +F+A+ V+ ++
Sbjct: 211 I---ATAKHFVG-DGGTERGVDRGNTLIDEKGLRDIHSAGYFSAINQGVQSVMASFNSWN 266
Query: 250 FKYIVSDCDSV-DVL-------------YNSQHYTKTPE-EAAAKSILAGLDLNCGSFLG 294
K + D + DVL +N+ + + + E A++I AG+D+ +
Sbjct: 267 GKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFVEGCDLEQCAQAINAGVDV---IMVP 323
Query: 295 KHTEA-------AVKAGLVNESAIDHAISNNFATLMRLGFF-DGHPSKQPYGQLGPKDVC 346
+H EA VKAG++ ES I+ A+ +R G F PS +P Q P+ +
Sbjct: 324 EHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQ-HPQWLG 382
Query: 347 TQANQDLALDAARQGIVLLKNTAGSLPLSPTAIKNLAVIGPNANVTKTMIGNY 399
++ LA +A R+ +VLLKN LP+ ++ + V G AN G +
Sbjct: 383 AAEHRTLAREAVRKSLVLLKNNESILPIKASS--RILVAGKGANAINMQAGGW 433
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 154/387 (39%), Gaps = 58/387 (14%)
Query: 64 VGDLVKRLTLQEKITFL--VD--SAGSVSRLGIPKYEWWSEALHGVSYVGPGTHFSNVVP 119
V L+ L EKI+ L VD + RLGIP S+ +G+ GT F + VP
Sbjct: 6 VEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRV-SDGPNGIR----GTKFFDGVP 60
Query: 120 GATSFPQVILTAASFNASLFQAIGKVVSTEARAMYNVGLAGLTFWSPNINIFRDPRWGRG 179
FP A++F+ L + GK+++ E+ A + G P N+ R P GRG
Sbjct: 61 SGC-FPNGTGLASTFDRDLLETAGKLMAKESIAKNAAVILG-----PTTNMQRGPLGGRG 114
Query: 180 QETPGEDPLLASKYATGYVKGLQQTDGGSPNRLKVAACCKHYTAYDLDNWKGTDRYHFNA 239
E+ EDP LA + VKG+Q +AA KH+ DL++ + + +
Sbjct: 115 FESFSEDPYLAGMATSSVVKGMQGEG--------IAATVKHFVCNDLEDQRFSSNSIVSE 166
Query: 240 MVIYTYYLIKFKYIVSDCDSVDVL-----YNSQHYTKTPE-------------------- 274
+ YL F+ V + V ++ N +H +++ +
Sbjct: 167 RALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLMSDW 226
Query: 275 ---EAAAKSILAGLDLNCGSFLGKHTEAAVKAGLVNESAI-DHAISNNFATLMRL-GFFD 329
A +I GLD+ T A V L + I + + ++++ F
Sbjct: 227 FGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVV 286
Query: 330 GHPSKQPYGQLGPKDVC--TQANQDLALDAARQGIVLLKNTAGSLPLSPTAIKNLAVIGP 387
+ K + GP+ T+ DL A IVLLKN LPL N+ VIGP
Sbjct: 287 DNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKE--DNIIVIGP 344
Query: 388 NANVTKTMIGNYEGTPCKY-TTPLQGL 413
NA + G Y +P +G+
Sbjct: 345 NAKAKTSSGGGSASMNSYYVVSPYEGI 371
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Query: 421 YQAGCSNVQCGTAQVXXXXXXXXXXXXTVLVMGADQSIEAESHDRXXXXXXXXXXXXITE 480
+QAG ++ VL++G + E E +DR +
Sbjct: 550 FQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRA 609
Query: 481 VAKVAKGPVILIIMSGGGFDISFAKNDPKITSILWVGYPGQAGGAAIADVCFGRYNPSGR 540
V K A +++ SG + + ++ +++ Y G G AIADV +G P+G+
Sbjct: 610 VLK-ANPNTVIVNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 541 LPMTW 545
L ++W
Sbjct: 666 LSLSW 670
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 143/365 (39%), Gaps = 63/365 (17%)
Query: 64 VGDLVKRLTLQEKITFL--VD--SAGSVSRLGIPKYEWWSEALHGVSYVGPGTHFSNVVP 119
V L+ L EKI+ L VD + RLGIP S+ +G+ GT F + VP
Sbjct: 6 VEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRV-SDGPNGIR----GTKFFDGVP 60
Query: 120 GATSFPQVILTAASFNASLFQAIGKVVSTEARAMYNVGLAGLTFWSPNINIFRDPRWGRG 179
FP A++F+ L + GK+ + E+ A + G P N R P GRG
Sbjct: 61 SGC-FPNGTGLASTFDRDLLETAGKLXAKESIAKNAAVILG-----PTTNXQRGPLGGRG 114
Query: 180 QETPGEDPLLASKYATGYVKGLQQTDGGSPNRLKVAACCKHYTAYDLDNWKGTDRYHFNA 239
E+ EDP LA + VKG Q +AA KH+ DL++ + + +
Sbjct: 115 FESFSEDPYLAGXATSSVVKGXQGEG--------IAATVKHFVCNDLEDQRFSSNSIVSE 166
Query: 240 MVIYTYYLIKFKYIVSDCDSVDVLYNSQHYTKTPEEAAAKSILAGLD-----------LN 288
+ YL F+ V + V + Y K E ++S +D L
Sbjct: 167 RALREIYLEPFRLAVKHANPVCI---XTAYNKVNGEHCSQSKKLLIDILRDEWKWDGXLX 223
Query: 289 CGSFLGKHTEAAVKAGLVNE----------SAIDHAISNN------------FATLMRLG 326
F T AA+K GL E + + H++++ L +
Sbjct: 224 SDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKXIK 283
Query: 327 FFDGHPSKQPYGQLGPKDVC--TQANQDLALDAARQGIVLLKNTAGSLPLSPTAIKNLAV 384
F + K + GP+ T+ DL A IVLLKN LPL N+ V
Sbjct: 284 FVVDNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKE--DNIIV 341
Query: 385 IGPNA 389
IGPNA
Sbjct: 342 IGPNA 346
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 421 YQAGCSNVQCGTAQVXXXXXXXXXXXXTVLVMGADQSIEAESHDRXXXXXXXXXXXXITE 480
+QAG ++ VL++G + E E +DR +
Sbjct: 550 FQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRA 609
Query: 481 VAKVAKGPVILIIMSGGGFDISFAKNDPKITSILWVGYPGQAGGAAIADVCFGRYNPSGR 540
V K A +++ SG + + ++ +++ Y G G AIADV +G P+G+
Sbjct: 610 VLK-ANPNTVIVNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 541 LPMTW 545
L ++W
Sbjct: 666 LSLSW 670
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 156/377 (41%), Gaps = 89/377 (23%)
Query: 63 RVGDLVKRLTLQEKITFLVD----------------SAGS---VSRLGIPKYEWWSEALH 103
+V +++ +LTL+EK+ +V +AG V R+G+P + ++
Sbjct: 3 KVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-VLADGPA 61
Query: 104 GVSYVGPGTHFSNVVPGATSFPQVILTAASFNASLFQAIGKVVSTEARAMYNVGLAGLTF 163
G+ + P T+FP I+ A+++N L + +GK + E R Y V +
Sbjct: 62 GLR-INPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YGVDV----L 115
Query: 164 WSPNINIFRDPRWGRGQETPGEDPLLASKYATGYVKGLQQTDGGSPNRLKVAACCKHYTA 223
+P +NI R+P GR E EDP+L+ + A+ +VKG+Q V AC KH+ A
Sbjct: 116 LAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG--------VGACIKHFVA 167
Query: 224 YDLDNWKGTDRYHFNAMV----IYTYYLIKFKYIVSDCDSVDVL---------YNSQH-- 268
N + T+R + +V + YL F+ V V+ Y SQ+
Sbjct: 168 ----NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEW 223
Query: 269 -YTKTPEEA----------------AAKSILAGLDLNC-GSFLGKHTE---------AAV 301
K E + + AG DL G +TE A+
Sbjct: 224 LLKKVLREEWGFEGFVMSDWYAGDNPVEQLKAGNDLIMPGKAYQVNTERRDEIEEIMEAL 283
Query: 302 KAGLVNESAIDHAISNNFATLMRLGFFDGHPSKQPYGQLGPKDVCTQANQDLALDAARQG 361
K G ++E +D + N L+ PS + Y D+ A +A +A +G
Sbjct: 284 KEGKLSEEVLDECVRNILKVLV------NAPSFKNYRYSNKPDLEKHAK--VAYEAGAEG 335
Query: 362 IVLLKNTAGSLPLSPTA 378
+VLL+N +LPLS +
Sbjct: 336 VVLLRNEE-ALPLSENS 351
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 510 ITSILWVGYPGQAGGAAIADVCFGRYNPSGRLPMTWYPQSY 550
+ IL V GQ G +ADV GR NPSG+LP T +P+ Y
Sbjct: 512 VDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY 551
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 156/377 (41%), Gaps = 89/377 (23%)
Query: 63 RVGDLVKRLTLQEKITFLVD----------------SAGS---VSRLGIPKYEWWSEALH 103
+V +++ +LTL+EK+ +V +AG V R+G+P + ++
Sbjct: 3 KVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-VLADGPA 61
Query: 104 GVSYVGPGTHFSNVVPGATSFPQVILTAASFNASLFQAIGKVVSTEARAMYNVGLAGLTF 163
G+ + P T+FP I+ A+++N L + +GK + E R Y V +
Sbjct: 62 GLR-INPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YGVDV----L 115
Query: 164 WSPNINIFRDPRWGRGQETPGEDPLLASKYATGYVKGLQQTDGGSPNRLKVAACCKHYTA 223
+P +NI R+P GR E EDP+L+ + A+ +VKG+Q V AC KH+ A
Sbjct: 116 LAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG--------VGACIKHFVA 167
Query: 224 YDLDNWKGTDRYHFNAMV----IYTYYLIKFKYIVSDCDSVDVL---------YNSQH-- 268
N + T+R + +V + YL F+ V V+ Y SQ+
Sbjct: 168 ----NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEW 223
Query: 269 -YTKTPEEA----------------AAKSILAGLDLNC-GSFLGKHTE---------AAV 301
K E + + AG DL G +TE A+
Sbjct: 224 LLKKVLREEWGFEGFVMSAWYAGDNPVEQLKAGNDLIMPGKAYQVNTERRDEIEEIMEAL 283
Query: 302 KAGLVNESAIDHAISNNFATLMRLGFFDGHPSKQPYGQLGPKDVCTQANQDLALDAARQG 361
K G ++E +D + N L+ PS + Y D+ A +A +A +G
Sbjct: 284 KEGKLSEEVLDECVRNILKVLV------NAPSFKNYRYSNKPDLEKHAK--VAYEAGAEG 335
Query: 362 IVLLKNTAGSLPLSPTA 378
+VLL+N +LPLS +
Sbjct: 336 VVLLRNEE-ALPLSENS 351
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 510 ITSILWVGYPGQAGGAAIADVCFGRYNPSGRLPMTWYPQSY 550
+ IL V GQ G +ADV GR NPSG+LP T +P+ Y
Sbjct: 512 VDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY 551
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 110/489 (22%), Positives = 179/489 (36%), Gaps = 92/489 (18%)
Query: 120 GATSFPQVILTAASFNASLFQAIGKVVSTEARAM-YNVGLAGLTFWSPNINIFRDPRWGR 178
G+T+F + A++++ +L + G+ + E +A +V L + P + + P+ GR
Sbjct: 71 GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKASGIHVILGPVA--GP---LGKTPQGGR 125
Query: 179 GQETPGEDPLLASKYATGYVKGLQQTDGGSPNRLKVAACCKHY----------------- 221
E G DP L + G+Q + V A KHY
Sbjct: 126 NWEGFGVDPYLTGIAMGQTINGIQS--------VGVQATAKHYILNEQELNRETISSNPD 177
Query: 222 --TAYDLDNWKGTDRYHFN-AMVIYTYYLIKFKYIVSDCDSVDVL--------------Y 264
T ++L W D N A V+ +Y + + D ++ + +
Sbjct: 178 DRTLHELYTWPFADAVQANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGYVMTDW 237
Query: 265 NSQHYTKTPEEAAAKSILAGLDLNCGSFL-GKHTEAAVKAGLVNESAIDHAISNNFATLM 323
N+QH T + + G D N + L G AV + V S +D ++ A
Sbjct: 238 NAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRILAAWY 297
Query: 324 RLGFFD-GHPSKQPYGQLGPKDVCTQANQDLALDA-ARQGIVLLKNTAGSLPLSPTAIKN 381
G G+PS + Q N + A AR GIVLLKN A LPL A +
Sbjct: 298 LTGQDQAGYPSFNISRNV-------QGNHKTNVRAIARDGIVLLKNDANILPLKKPA--S 348
Query: 382 LAVIGPNANVTKTMIGNY-EGTP--------------------CKYTTPLQGLAAVVATI 420
+AV+G A +IGN+ +P Y + A+
Sbjct: 349 IAVVGSAA-----IIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFVAPYDAINTRA 403
Query: 421 YQAGCSNVQCGTAQVXXXXXXXXXXXXTVLVMGADQ-----SIEAESHDRXXXXXXXXXX 475
G T ++ + AD ++E + DR
Sbjct: 404 SSQGTQVTLSNTDNTSSGASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGN 463
Query: 476 XXITEVAKVAKGPVILIIMSGGGFDISFAKNDPKITSILWVGYPGQAGGAAIADVCFGRY 535
+ VA A VI+++ S G + P++ +++W G P Q G A+ DV +G
Sbjct: 464 ALVQAVAG-ANSNVIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDV 522
Query: 536 NPSGRLPMT 544
+PSG+L T
Sbjct: 523 SPSGKLVYT 531
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 107/481 (22%), Positives = 179/481 (37%), Gaps = 76/481 (15%)
Query: 120 GATSFPQVILTAASFNASLFQAIGKVVSTEARAM-YNVGLAGLTFWSPNINIFRDPRWGR 178
G+T+F + A++++ +L + G+ + E +A +V L + P + + P+ GR
Sbjct: 72 GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKASGIHVILGPVA--GP---LGKTPQGGR 126
Query: 179 GQETPGEDPLLASKYATGYVKGLQQT-----------DGGSPNRLKVAACCKHYTAYDLD 227
E G DP L + G+Q + NR +++ T ++L
Sbjct: 127 NWEGFGVDPYLTGIAMGQTINGIQSVGVQATAKHYILNEQELNRETISSNPDDRTLHELY 186
Query: 228 NWKGTDRYHFN-AMVIYTYYLIKFKYIVSDCDSVDVL--------------YNSQHYTKT 272
W D N A V+ +Y + + D ++ + +N+QH T
Sbjct: 187 TWPFADAVQANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGYVMTDWNAQHTTVQ 246
Query: 273 PEEAAAKSILAGLDLNCGSFL-GKHTEAAVKAGLVNESAIDHAISNNFATLMRLGFFD-G 330
+ + G D N + L G AV + V S +D ++ A G G
Sbjct: 247 SANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRILAAWYLTGQDQAG 306
Query: 331 HPSKQPYGQLGPKDVCTQANQDLALDA-ARQGIVLLKNTAGSLPLSPTAIKNLAVIGPNA 389
+PS + Q N + A AR GIVLLKN A LPL A ++AV+G A
Sbjct: 307 YPSFNISRNV-------QGNHKTNVRAIARDGIVLLKNDANILPLKKPA--SIAVVGSAA 357
Query: 390 NVTKTMIGNY-EGTP--------------------CKYTTPLQGLAAVVATIYQAGCSNV 428
+IGN+ +P Y + A+ G
Sbjct: 358 -----IIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFVAPYDAINTRASSQGTQVT 412
Query: 429 QCGTAQVXXXXXXXXXXXXTVLVMGADQ-----SIEAESHDRXXXXXXXXXXXXITEVAK 483
T ++ + AD ++E + DR + VA
Sbjct: 413 LSNTDNTSSGASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAG 472
Query: 484 VAKGPVILIIMSGGGFDISFAKNDPKITSILWVGYPGQAGGAAIADVCFGRYNPSGRLPM 543
A VI+++ S G + P++ +++W G P Q G A+ DV +G +PSG+L
Sbjct: 473 -ANSNVIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVY 531
Query: 544 T 544
T
Sbjct: 532 T 532
>pdb|1W2Y|A Chain A, The Crystal Structure Of A Complex Of Campylobacter Jejuni
Dutpase With Substrate Analogue Dupnhp
pdb|1W2Y|B Chain B, The Crystal Structure Of A Complex Of Campylobacter Jejuni
Dutpase With Substrate Analogue Dupnhp
pdb|2CIC|A Chain A, The Crystal Structure Of A Complex Of Campylobacter Jejuni
Dutpase With Substrate Analogue Dupnhpp
Length = 229
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 21/153 (13%)
Query: 226 LDNWKGT-----DRYHFNAMVIYTYYLIK----FKYIVSDCDSVDVLYNSQHYTKTPEEA 276
L NW+ D +HF ++ Y K FK I ++ ++V V + + P E
Sbjct: 65 LTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIATEVNAVSVFQDFCKEEEYPNEG 124
Query: 277 AAKSILAGLDL----------NCGSFLGKHTEAAVKAGLVNESAIDHAISNNFATLMRL- 325
IL ++L N G L + A+K GL E I N + R
Sbjct: 125 DIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIKCGLNLEILYKTYIGKNVLNIFRQN 184
Query: 326 -GFFDGHPSKQPYGQLGPKDVCTQANQDLALDA 357
G+ DG K G+ + + Q+L D
Sbjct: 185 NGYKDGSYKKTWNGKEDNEVLAQILEQELDFDT 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,536,751
Number of Sequences: 62578
Number of extensions: 625902
Number of successful extensions: 1224
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 29
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)