Query         047621
Match_columns 550
No_of_seqs    271 out of 1741
Neff          7.5 
Searched_HMMs 46136
Date          Fri Mar 29 13:00:43 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047621hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PLN03080 Probable beta-xylosid 100.0  7E-116  1E-120  989.4  50.4  534   14-550     6-593 (779)
  2 PRK15098 beta-D-glucoside gluc 100.0 1.9E-92 4.1E-97  801.1  45.6  458   56-548    30-602 (765)
  3 COG1472 BglX Beta-glucosidase- 100.0 4.1E-53 8.8E-58  445.0  21.0  269   87-400    55-372 (397)
  4 PF00933 Glyco_hydro_3:  Glycos 100.0 4.2E-48 9.1E-53  396.5  16.3  223   72-321     1-299 (299)
  5 PRK05337 beta-hexosaminidase;  100.0 4.3E-36 9.2E-41  310.4  15.6  198   91-324    54-308 (337)
  6 PF01915 Glyco_hydro_3_C:  Glyc 100.0 5.2E-31 1.1E-35  259.9  11.2  180  362-549     1-192 (227)
  7 COG1160 Predicted GTPases [Gen  60.7      22 0.00048   38.4   6.7   47  436-495    75-121 (444)
  8 PF06858 NOG1:  Nucleolar GTP-b  55.4      41 0.00089   25.8   5.5   42  444-494    13-55  (58)
  9 PF00056 Ldh_1_N:  lactate/mala  53.5     4.6  0.0001   36.6   0.2   55  440-501    65-123 (141)
 10 TIGR01759 MalateDH-SF1 malate   52.4      13 0.00027   38.8   3.2   59  439-501    74-134 (323)
 11 PRK05442 malate dehydrogenase;  49.8      12 0.00025   39.1   2.5   57  439-501    75-135 (326)
 12 COG0039 Mdh Malate/lactate deh  49.1      15 0.00032   38.2   3.0   58  440-502    65-124 (313)
 13 TIGR01756 LDH_protist lactate   48.0      14 0.00031   38.2   2.8   56  440-501    56-115 (313)
 14 PRK00286 xseA exodeoxyribonucl  45.8      86  0.0019   34.0   8.5   60  433-504   179-240 (438)
 15 TIGR01757 Malate-DH_plant mala  45.5      13 0.00029   39.6   2.2   56  440-501   116-175 (387)
 16 TIGR00237 xseA exodeoxyribonuc  43.3 1.2E+02  0.0026   33.0   9.0  133  308-504    97-235 (432)
 17 PF10662 PduV-EutP:  Ethanolami  43.2 1.8E+02  0.0039   26.6   8.8   77  435-531    54-141 (143)
 18 cd06533 Glyco_transf_WecG_TagA  41.1   1E+02  0.0023   28.7   7.3   41  442-501    97-137 (171)
 19 cd00938 HisRS_RNA HisRS_RNA bi  40.4      68  0.0015   23.3   4.4   30  297-326    13-42  (45)
 20 PLN00112 malate dehydrogenase   40.4      18 0.00039   39.4   2.2   55  440-501   172-231 (444)
 21 TIGR01772 MDH_euk_gproteo mala  39.3      31 0.00068   35.7   3.7   55  440-501    63-121 (312)
 22 cd01338 MDH_choloroplast_like   39.0      22 0.00047   37.1   2.5   57  439-501    73-133 (322)
 23 PLN00135 malate dehydrogenase   39.0      26 0.00057   36.3   3.0   57  440-501    54-113 (309)
 24 PRK05086 malate dehydrogenase;  38.8      27 0.00058   36.2   3.1   56  440-501    65-123 (312)
 25 cd00300 LDH_like L-lactate deh  38.8      21 0.00046   36.6   2.4   57  440-501    62-120 (300)
 26 PF10087 DUF2325:  Uncharacteri  38.1      86  0.0019   26.2   5.6   40  438-492    42-81  (97)
 27 PF02601 Exonuc_VII_L:  Exonucl  36.7 1.2E+02  0.0025   31.3   7.5   49  444-504    75-123 (319)
 28 cd01336 MDH_cytoplasmic_cytoso  36.7      30 0.00066   36.0   3.1   58  440-501    74-133 (325)
 29 PF09851 SHOCT:  Short C-termin  36.6      77  0.0017   20.8   3.9   26  294-319     5-30  (31)
 30 cd00704 MDH Malate dehydrogena  36.4      31 0.00068   35.9   3.1   59  439-501    71-131 (323)
 31 cd01337 MDH_glyoxysomal_mitoch  35.1      29 0.00063   35.9   2.7   55  440-501    64-122 (310)
 32 cd05294 LDH-like_MDH_nadp A la  34.2      38 0.00083   35.0   3.4   57  440-501    68-126 (309)
 33 cd01857 HSR1_MMR1 HSR1/MMR1.    32.9      83  0.0018   28.0   5.0   19  436-454     3-21  (141)
 34 PLN02602 lactate dehydrogenase  31.8      34 0.00074   36.1   2.6   55  440-501   101-159 (350)
 35 TIGR01763 MalateDH_bact malate  31.6      36 0.00078   35.1   2.7   53  442-501    67-123 (305)
 36 TIGR01771 L-LDH-NAD L-lactate   31.3      33 0.00071   35.3   2.3   55  440-501    60-118 (299)
 37 cd05290 LDH_3 A subgroup of L-  31.3      32  0.0007   35.5   2.3   57  440-501    64-124 (307)
 38 PF02450 LCAT:  Lecithin:choles  30.8      61  0.0013   34.6   4.4   60  475-534   107-174 (389)
 39 TIGR01758 MDH_euk_cyt malate d  29.6      46 0.00099   34.7   3.0   56  440-501    71-130 (324)
 40 cd05291 HicDH_like L-2-hydroxy  29.1      34 0.00075   35.1   2.0   54  441-501    65-122 (306)
 41 PTZ00325 malate dehydrogenase;  28.6      45 0.00098   34.7   2.8   57  439-501    71-130 (321)
 42 PRK00066 ldh L-lactate dehydro  27.2      43 0.00094   34.7   2.4   55  440-501    69-127 (315)
 43 PRK10528 multifunctional acyl-  26.3 2.6E+02  0.0056   26.2   7.4   19  371-389     2-20  (191)
 44 cd05293 LDH_1 A subgroup of L-  26.1      46   0.001   34.5   2.3   56  441-501    68-125 (312)
 45 PF01926 MMR_HSR1:  50S ribosom  25.4 1.5E+02  0.0033   24.9   5.2   45  436-494    71-115 (116)
 46 PRK13556 azoreductase; Provisi  25.1 2.2E+02  0.0048   27.3   6.8   53  436-499    81-148 (208)
 47 PLN02684 Probable galactinol--  24.9 1.3E+02  0.0027   34.9   5.5  125  134-284   358-502 (750)
 48 PF00009 GTP_EFTU:  Elongation   24.4 2.3E+02   0.005   26.4   6.7   48  434-494    83-130 (188)
 49 PRK13555 azoreductase; Provisi  24.4 2.1E+02  0.0045   27.7   6.4   53  436-499    81-148 (208)
 50 PF03808 Glyco_tran_WecB:  Glyc  23.6   2E+02  0.0044   26.8   6.0   40  443-501   100-139 (172)
 51 COG1182 AcpD Acyl carrier prot  22.8 2.6E+02  0.0056   27.2   6.5   53  437-500    80-147 (202)
 52 PF09373 PMBR:  Pseudomurein-bi  22.3 1.2E+02  0.0027   20.1   3.0   25  303-327     2-26  (33)
 53 PLN02355 probable galactinol--  22.1 1.2E+02  0.0027   35.0   4.8  126  134-284   367-511 (758)
 54 COG0486 ThdF Predicted GTPase   21.2   2E+02  0.0042   31.5   5.9   48  433-494   285-332 (454)
 55 PRK13533 7-cyano-7-deazaguanin  20.3      84  0.0018   34.8   3.0   42  248-290    79-121 (487)

No 1  
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00  E-value=6.6e-116  Score=989.38  Aligned_cols=534  Identities=53%  Similarity=0.941  Sum_probs=473.5

Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCCccccCCCCCCccCCCcCCCCCCHHHHHHHHHhcCCHHHHHHhhcCCCCccCCCCCC
Q 047621           14 SVLFLFLTYCSLQHSSSSAQSSPVFACDVVSNPSLASLGFCNTSLGIDLRVGDLVKRLTLQEKITFLVDSAGSVSRLGIP   93 (550)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ll~~mTleEKv~ql~~~~~~~~~~gip   93 (550)
                      .+++++++.++........+..|+|+|+   +++.+.+||||+++|+++|+++||++||+|||++||.+.+.+++|+|||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~---~~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP   82 (779)
T PLN03080          6 RPLFLLLFLLALGATFKAADAHPQFPCK---PPTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIP   82 (779)
T ss_pred             hhHHHHHHHHhcchhcccccCCCCcCCC---CccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCC
Confidence            3445544444444444445567999999   4567789999999999999999999999999999999989999999999


Q ss_pred             cccccccccccccccCCCcccc-CCCCCCCcCchHHHHHhhcCHHHHHHHHHHHHHHHHHhhhcCCccceeeccccccCC
Q 047621           94 KYEWWSEALHGVSYVGPGTHFS-NVVPGATSFPQVILTAASFNASLFQAIGKVVSTEARAMYNVGLAGLTFWSPNINIFR  172 (550)
Q Consensus        94 ~~~~~~d~~~Gv~~~~~g~~~~-~~~~~~t~fP~~~~laAt~d~~l~~~~g~~~~~E~ra~~~~g~~Gi~~~aP~vdi~r  172 (550)
                      .|.||+|++||++..++|++|. +.+.++|.||++|++|||||++|++++|+++|+|+|+++|.|++|+++|+|++||+|
T Consensus        83 ~~~~~~d~~hGv~~~~~g~~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~r  162 (779)
T PLN03080         83 PYEWWSESLHGLADNGPGVSFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFR  162 (779)
T ss_pred             ccceecccccccccCCCccccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeeccccccc
Confidence            9999999999999888888885 445679999999999999999999999999999999998877668888999999999


Q ss_pred             CCCCCccCCCCCCCHHHHHHHHHHHHHHhccCCCC------CCCCceEEEeecccccccCCCCCC---------------
Q 047621          173 DPRWGRGQETPGEDPLLASKYATGYVKGLQQTDGG------SPNRLKVAACCKHYTAYDLDNWKG---------------  231 (550)
Q Consensus       173 ~P~~gr~~e~~geDp~lv~~~a~a~v~Glq~~~~G------~~~~~~v~a~~KHFpg~~~~~~~~---------------  231 (550)
                      ||+|||++|||||||+++++|+.+||+|||+.+..      ..++.+|++|+||||||++++|++               
T Consensus       163 dPrwGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L  242 (779)
T PLN03080        163 DPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDM  242 (779)
T ss_pred             CCCcCccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHH
Confidence            99999999999999999999999999999985100      124567999999999999986542               


Q ss_pred             --cccccchhhhh--------ccccc-------------------cce-EEEEcCcchhHHhhhcCcccCCHHHHHHHHH
Q 047621          232 --TDRYHFNAMVI--------YTYYL-------------------IKF-KYIVSDCDSVDVLYNSQHYTKTPEEAAAKSI  281 (550)
Q Consensus       232 --~~~~~f~a~v~--------~syn~-------------------Lgf-G~v~sD~~~m~~~~~~~~~~~~~~~a~~~ai  281 (550)
                        ++..||+++|.        ||||+                   ||| |+|||||++|..+.+.++|+.+.+|++++||
T Consensus       243 ~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al  322 (779)
T PLN03080        243 EDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQKARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVL  322 (779)
T ss_pred             HhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHHHHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHH
Confidence              23458887764        88888                   699 9999999999999988888778999999999


Q ss_pred             HhccCCCCcchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCccccchHHHHHHHHHHHhc
Q 047621          282 LAGLDLNCGSFLGKHTEAAVKAGLVNESAIDHAISNNFATLMRLGFFDGHPSKQPYGQLGPKDVCTQANQDLALDAARQG  361 (550)
Q Consensus       282 ~AG~Dl~~~~~~~~~l~~av~~g~i~~~~ld~a~~ril~~k~~~glf~~~p~~~~~~~~~~~~v~~~~h~~la~eaA~~s  361 (550)
                      +||+||+|+.++.++|.+||++|++++++||+|++|||++|+|+|+||+++...+|.+.....+++++|+++|+|+|++|
T Consensus       323 ~AG~Dl~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~s  402 (779)
T PLN03080        323 KAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQG  402 (779)
T ss_pred             HcCCCcccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhC
Confidence            99999999988888999999999999999999999999999999999965444456555667889999999999999999


Q ss_pred             chhcccCCCCCCCCCCCCCeEEEEcCCCcccccccccccCCCCccCChHhhhccce-eEEEecCCCCccCC-chhHHHHH
Q 047621          362 IVLLKNTAGSLPLSPTAIKNLAVIGPNANVTKTMIGNYEGTPCKYTTPLQGLAAVV-ATIYQAGCSNVQCG-TAQVDDAK  439 (550)
Q Consensus       362 ivLLKN~~~~LPL~~~~~~kVaviG~~a~~~~~~~G~~~g~~~~~~t~~~~l~~~~-~~~~~~g~~~~~~~-~~~~~~a~  439 (550)
                      ||||||++++|||++.+.+||+||||+++....++|+|++.+++.+|++++|+++. .++|..||....|. +..+++++
T Consensus       403 iVLLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~  482 (779)
T PLN03080        403 IVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAI  482 (779)
T ss_pred             EEEEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHH
Confidence            99999999999999765679999999999988888889999999999999999875 57799998655543 45688899


Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCCeeecccccCCCCCcEEEEcCCC
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVAKGPVILIIMSGGGFDISFAKNDPKITSILWVGYP  519 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl~~~~~~~~v~ail~a~~p  519 (550)
                      +++++||+|||++|.+...++|+.||.++.||+.|++||++|++++++|||||+++|+|++++|+.++++++||||+|||
T Consensus       483 ~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~yp  562 (779)
T PLN03080        483 AIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYP  562 (779)
T ss_pred             HHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCC
Confidence            99999999999999999899999999999999999999999998777899999999999999999777899999999999


Q ss_pred             ChhHHHHHHHHhcCCCCCCccCccccCCCCC
Q 047621          520 GQAGGAAIADVCFGRYNPSGRLPMTWYPQSY  550 (550)
Q Consensus       520 G~~gg~AiadVL~G~~nPsGkLPvT~~~~~~  550 (550)
                      ||++|+|+||||||++|||||||+|||+++|
T Consensus       563 GqegG~AiAdvLfG~vnPsGkLPvT~~p~~~  593 (779)
T PLN03080        563 GEVGGQALAEIIFGDYNPGGRLPMTWYPESF  593 (779)
T ss_pred             cccchhhhHHHHcCCCCCCCcCeeeeccccc
Confidence            9999999999999999999999999987764


No 2  
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00  E-value=1.9e-92  Score=801.12  Aligned_cols=458  Identities=32%  Similarity=0.509  Sum_probs=392.4

Q ss_pred             CCCCHHHHHHHHHhcCCHHHHHHhhcCCC-------------------Cc-------------------cCCCCCCcccc
Q 047621           56 TSLGIDLRVGDLVKRLTLQEKITFLVDSA-------------------GS-------------------VSRLGIPKYEW   97 (550)
Q Consensus        56 ~~~~~~~r~~~ll~~mTleEKv~ql~~~~-------------------~~-------------------~~~~gip~~~~   97 (550)
                      ++.+.++|+++++++||+|||++||++..                   ++                   .+|+|||.+ +
T Consensus        30 ~~~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~~~~~~~~~lq~~~~~~~~~giP~l-i  108 (765)
T PRK15098         30 TPEARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNTVTRQDIRAMQDQVMQLSRLKIPLF-F  108 (765)
T ss_pred             CCcCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcCcCHHHHHHHHHHHhhCCCCCCCee-E
Confidence            34578999999999999999999998520                   00                   367899999 7


Q ss_pred             cccccccccccCCCccccCCCCCCCcCchHHHHHhhcCHHHHHHHHHHHHHHHHHhhhcCCcccee-eccccccCCCCCC
Q 047621           98 WSEALHGVSYVGPGTHFSNVVPGATSFPQVILTAASFNASLFQAIGKVVSTEARAMYNVGLAGLTF-WSPNINIFRDPRW  176 (550)
Q Consensus        98 ~~d~~~Gv~~~~~g~~~~~~~~~~t~fP~~~~laAt~d~~l~~~~g~~~~~E~ra~~~~g~~Gi~~-~aP~vdi~r~P~~  176 (550)
                      +.|++||.               .|.||+++++|||||+++++++|+++|+|+|++      |+|+ |+|++||+|||+|
T Consensus       109 ~~D~e~G~---------------~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~------Gin~~laPv~Dv~r~p~~  167 (765)
T PRK15098        109 AYDVVHGQ---------------RTVFPISLGLASSWDLDAVATVGRVSAYEAADD------GLNMTWAPMVDISRDPRW  167 (765)
T ss_pred             EEeCCCCc---------------cccCChHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCCEEeeCcccccCCCCc
Confidence            89999985               478999999999999999999999999999999      8888 9999999999999


Q ss_pred             CccCCCCCCCHHHHHHHHHHHHHHhccCCCCCCCCceEEEeecccccccCCCCC--------------Ccccccchhhhh
Q 047621          177 GRGQETPGEDPLLASKYATGYVKGLQQTDGGSPNRLKVAACCKHYTAYDLDNWK--------------GTDRYHFNAMVI  242 (550)
Q Consensus       177 gr~~e~~geDp~lv~~~a~a~v~Glq~~~~G~~~~~~v~a~~KHFpg~~~~~~~--------------~~~~~~f~a~v~  242 (550)
                      ||++|+|||||+++++|+.+||+|||+++  ..+..+|++|+|||||||.++.+              +.+..||+++|.
T Consensus       168 gr~~rsfgeDP~lv~~~~~a~v~GlQ~~~--~~~~~gV~a~~KHFpG~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~ai~  245 (765)
T PRK15098        168 GRASEGFGEDTYLTSIMGKTMVKAMQGKS--PADRYSVMTSVKHFALYGAVEGGRDYNTVDMSPQRMFNDYLPPYKAGLD  245 (765)
T ss_pred             cccccCcCCCHHHHHHHHHHHHHHHcCCC--CCCCCCEEEECcEEeCCCCcccCccCccCcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999862  11222399999999999964311              123468998875


Q ss_pred             -------ccccc--------------------cce-EEEEcCcchhHHhhhcCcccCCHHHHHHHHHHhccCCCCcch-h
Q 047621          243 -------YTYYL--------------------IKF-KYIVSDCDSVDVLYNSQHYTKTPEEAAAKSILAGLDLNCGSF-L  293 (550)
Q Consensus       243 -------~syn~--------------------Lgf-G~v~sD~~~m~~~~~~~~~~~~~~~a~~~ai~AG~Dl~~~~~-~  293 (550)
                             ||||.                    ||| |+|||||++|..+.. |++..+.+|++++||+||+||+|... +
T Consensus       246 ag~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ea~~~Al~AG~Dl~m~~~~~  324 (765)
T PRK15098        246 AGSGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPEDAVRLALKSGIDMSMSDEYY  324 (765)
T ss_pred             hCCCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHHHHHHHHHHcCCCcccCchhH
Confidence                   67766                    699 999999999998874 66667889999999999999998754 4


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCC-------CCccccchHHHHHHHHHHHhcchhcc
Q 047621          294 GKHTEAAVKAGLVNESAIDHAISNNFATLMRLGFFDGHPSKQPYGQL-------GPKDVCTQANQDLALDAARQGIVLLK  366 (550)
Q Consensus       294 ~~~l~~av~~g~i~~~~ld~a~~ril~~k~~~glf~~~p~~~~~~~~-------~~~~v~~~~h~~la~eaA~~sivLLK  366 (550)
                      .+.|.++|++|.+++++||+|++|||++|+++|+|+ +|    |.+.       ....+.+++|+++++++|++||||||
T Consensus       325 ~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~p----~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLLK  399 (765)
T PRK15098        325 SKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DP----YSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLK  399 (765)
T ss_pred             HHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CC----ccccccccccccccccCCHHHHHHHHHHHHhcEEEEe
Confidence            467999999999999999999999999999999998 33    3211       11234578999999999999999999


Q ss_pred             cCCCCCCCCCCCCCeEEEEcCCCccccccccccc--CCCCccCChHhhhccce----eEEEecCCCCccC----------
Q 047621          367 NTAGSLPLSPTAIKNLAVIGPNANVTKTMIGNYE--GTPCKYTTPLQGLAAVV----ATIYQAGCSNVQC----------  430 (550)
Q Consensus       367 N~~~~LPL~~~~~~kVaviG~~a~~~~~~~G~~~--g~~~~~~t~~~~l~~~~----~~~~~~g~~~~~~----------  430 (550)
                      |++++|||+++  +||+|||++++....+.|+|+  +.+++.+|++++|+++.    .+.|..||+....          
T Consensus       400 N~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~~  477 (765)
T PRK15098        400 NRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQY  477 (765)
T ss_pred             cCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhcc
Confidence            99999999854  599999999988765667664  56778899999999864    5788888852111          


Q ss_pred             ----------CchhHHHHHHHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCCeee
Q 047621          431 ----------GTAQVDDAKKAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVAKGPVILIIMSGGGFD  500 (550)
Q Consensus       431 ----------~~~~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~~g~P~d  500 (550)
                                .+..+++++++|++||++||++|.+...++|+.||.++.||+.|.+||++|++. ++|+|||+++|+||+
T Consensus       478 ~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~-~~~vVvVl~~g~P~~  556 (765)
T PRK15098        478 EEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT-GKPLVLVLMNGRPLA  556 (765)
T ss_pred             ccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh-CcCEEEEEeCCceee
Confidence                      124578889999999999999999888899999999999999999999999875 579999999999999


Q ss_pred             cccccCCCCCcEEEEcCCCChhHHHHHHHHhcCCCCCCccCccccCCC
Q 047621          501 ISFAKNDPKITSILWVGYPGQAGGAAIADVCFGRYNPSGRLPMTWYPQ  548 (550)
Q Consensus       501 l~~~~~~~~v~ail~a~~pG~~gg~AiadVL~G~~nPsGkLPvT~~~~  548 (550)
                      +.|+.  ++++|||++|+||+++|+|+||||||++|||||||+|||++
T Consensus       557 l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~p~~  602 (765)
T PRK15098        557 LVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRS  602 (765)
T ss_pred             ccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccceeCC
Confidence            99873  48999999999999999999999999999999999999865


No 3  
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00  E-value=4.1e-53  Score=445.05  Aligned_cols=269  Identities=32%  Similarity=0.516  Sum_probs=224.1

Q ss_pred             cCCCCCCcccccccccccccccCCCccccCCCCCCCcCchHHHHHhhcCHHHHHHHHHHHHHHHHHhhhcCCcccee-ec
Q 047621           87 VSRLGIPKYEWWSEALHGVSYVGPGTHFSNVVPGATSFPQVILTAASFNASLFQAIGKVVSTEARAMYNVGLAGLTF-WS  165 (550)
Q Consensus        87 ~~~~gip~~~~~~d~~~Gv~~~~~g~~~~~~~~~~t~fP~~~~laAt~d~~l~~~~g~~~~~E~ra~~~~g~~Gi~~-~a  165 (550)
                      .+|++||.+ ++.|+++|..+.     +.   .++|.||+++++||+||+++++++|+++|+|+|++      |+|+ |+
T Consensus        55 ~~r~~ipll-i~~D~egG~v~r-----~~---~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~------Gin~~fA  119 (397)
T COG1472          55 EARLGIPLL-IAIDQEGGRVQR-----LR---EGFTVFPAALALAATWDPELARKVGRVIAKELRAL------GINLDFA  119 (397)
T ss_pred             hhccCCCeE-EEEecCCCeeee-----cc---CCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHc------CCCcccc
Confidence            358999999 689999997532     22   15899999999999999999999999999999999      8898 99


Q ss_pred             cccccCCCCCCCccCCC-CCCCHHHHHHHHHHHHHHhccCCCCCCCCceEEEeecccccccCCCCCC-------------
Q 047621          166 PNINIFRDPRWGRGQET-PGEDPLLASKYATGYVKGLQQTDGGSPNRLKVAACCKHYTAYDLDNWKG-------------  231 (550)
Q Consensus       166 P~vdi~r~P~~gr~~e~-~geDp~lv~~~a~a~v~Glq~~~~G~~~~~~v~a~~KHFpg~~~~~~~~-------------  231 (550)
                      ||+||.|||+|||..|+ |||||++|+.|+.+|++|||+.  |      |++|+|||||||.++-+.             
T Consensus       120 PvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~--g------v~at~KHFpGhG~~~~dsh~~~~~v~~~~L~  191 (397)
T COG1472         120 PVLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGA--G------VAATIKHFPGHGAVEGDSHYGLLPIDPRALR  191 (397)
T ss_pred             ceeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhC--C------ceeeeccccCCCCCcCCcccccCCCChHHHH
Confidence            99999999999996666 9999999999999999999998  8      999999999998664322             


Q ss_pred             -cccccchhhhh----------ccccc--------------------cce-EEEEcCcchhHHhhhcCcccCCHHHHHHH
Q 047621          232 -TDRYHFNAMVI----------YTYYL--------------------IKF-KYIVSDCDSVDVLYNSQHYTKTPEEAAAK  279 (550)
Q Consensus       232 -~~~~~f~a~v~----------~syn~--------------------Lgf-G~v~sD~~~m~~~~~~~~~~~~~~~a~~~  279 (550)
                       .+..||..++.          ++||+                    ||| |+|||||++|+.+.+.+   .+..+++..
T Consensus       192 e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~---g~~~d~~~~  268 (397)
T COG1472         192 ELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAH---GSAADRAEA  268 (397)
T ss_pred             HhhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhc---cCHHHHHHH
Confidence             23345654433          55665                    699 99999999999877643   356788888


Q ss_pred             HHHhccCCCCcch-hH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCccccchHHHHHHHHH
Q 047621          280 SILAGLDLNCGSF-LG-KHTEAAVKAGLVNESAIDHAISNNFATLMRLGFFDGHPSKQPYGQLGPKDVCTQANQDLALDA  357 (550)
Q Consensus       280 ai~AG~Dl~~~~~-~~-~~l~~av~~g~i~~~~ld~a~~ril~~k~~~glf~~~p~~~~~~~~~~~~v~~~~h~~la~ea  357 (550)
                      +++||+||+|... .. ..+..+...+ +++++++++++|||+.|+++|+|++ |    |..         +|+++++++
T Consensus       269 al~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~~-~----~~~---------~~~~~a~~~  333 (397)
T COG1472         269 ALKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFEN-P----YSS---------EHRALAREA  333 (397)
T ss_pred             HHhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhccccC-C----Cch---------hhHHHHHHH
Confidence            9999999998532 33 3344444444 9999999999999999999999994 3    321         899999999


Q ss_pred             HHhcchhcccCCCCCCCCCCCCCeEEEEcCCCccccccccccc
Q 047621          358 ARQGIVLLKNTAGSLPLSPTAIKNLAVIGPNANVTKTMIGNYE  400 (550)
Q Consensus       358 A~~sivLLKN~~~~LPL~~~~~~kVaviG~~a~~~~~~~G~~~  400 (550)
                      +++|+|||||+..+|||+ ++.++|+++||+++.. .  |+|+
T Consensus       334 ~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~  372 (397)
T COG1472         334 ARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS  372 (397)
T ss_pred             HHHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence            999999999998999999 5567999999999887 4  5554


No 4  
>PF00933 Glyco_hydro_3:  Glycosyl hydrolase family 3 N terminal domain;  InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00  E-value=4.2e-48  Score=396.47  Aligned_cols=223  Identities=31%  Similarity=0.488  Sum_probs=177.7

Q ss_pred             CHHHHHHhhcCC----------------------------CCccCCCCCCcccccccccccccccCCCccccCCCCCCCc
Q 047621           72 TLQEKITFLVDS----------------------------AGSVSRLGIPKYEWWSEALHGVSYVGPGTHFSNVVPGATS  123 (550)
Q Consensus        72 TleEKv~ql~~~----------------------------~~~~~~~gip~~~~~~d~~~Gv~~~~~g~~~~~~~~~~t~  123 (550)
                      |+|||++||++.                            ....+++|||.+ +..|+++|+...     ++   .+.|.
T Consensus         1 TleeKigQl~~~~~~~i~~~~vGgv~~~~~~~~~~~~~~~~~~~~~~~iP~~-i~~D~egG~~~~-----~~---~~~t~   71 (299)
T PF00933_consen    1 TLEEKIGQLFMELKELIKEYHVGGVILPEQLKQLTQSLQAISEQSRLGIPLL-IAIDQEGGIVQR-----LG---GGFTA   71 (299)
T ss_dssp             -HHHHHHHTEEHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHCCGCGTCT-E-EEEEETTSTTTS-----TT---TTS--
T ss_pred             CHHHHHHHHHHHHHHHHhcCCccEEEcHHHHHHHHHHHHHHhhccccCCCeE-EEEcCCCceEec-----CC---CcCcc
Confidence            899999999931                            124678999998 689999998532     11   12699


Q ss_pred             CchHHHHHhhcCHHHHHHHHHHHHHHHHHhhhcCCcccee-eccccccCCCCCCCccCCCCCCCHHHHHHHHHHHHHHhc
Q 047621          124 FPQVILTAASFNASLFQAIGKVVSTEARAMYNVGLAGLTF-WSPNINIFRDPRWGRGQETPGEDPLLASKYATGYVKGLQ  202 (550)
Q Consensus       124 fP~~~~laAt~d~~l~~~~g~~~~~E~ra~~~~g~~Gi~~-~aP~vdi~r~P~~gr~~e~~geDp~lv~~~a~a~v~Glq  202 (550)
                      ||+++++|||||+++++++|+.+|+|++++      |+|+ |||++||.|||+|||+.|||||||++|++|+.+||+|+|
T Consensus        72 ~P~~~~l~at~d~~~a~~~g~~~a~el~~~------Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q  145 (299)
T PF00933_consen   72 FPSPMALAATWDPELAYEVGRIIARELRAL------GINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQ  145 (299)
T ss_dssp             -S-HHHHHHHTCHHHHHHHHHHHHHHHHHT------T-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhhhccchHHHHHHHHHHHHHHHh------hhccccccceeeeeeccccccccccchhHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999      8888 999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCceEEEeecccccccCCC--------------CCCcccccchhhh-h-------ccccc-------------
Q 047621          203 QTDGGSPNRLKVAACCKHYTAYDLDN--------------WKGTDRYHFNAMV-I-------YTYYL-------------  247 (550)
Q Consensus       203 ~~~~G~~~~~~v~a~~KHFpg~~~~~--------------~~~~~~~~f~a~v-~-------~syn~-------------  247 (550)
                      +.  |      |++|+||||||+..+              +++.+..||+++| .       +||+.             
T Consensus       146 ~~--g------v~~~~KHFpG~~~~d~~~~~~~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~pas~s~~~l  217 (299)
T PF00933_consen  146 GA--G------VAATAKHFPGHGAQDSHRDLPSVDVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTPASLSPKIL  217 (299)
T ss_dssp             CT--T------SEEEEEEETTGGCSCTTTTTEEEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEEGGG-HHHH
T ss_pred             cc--c------ccccccccccccccccccccceecCCcccccchhcccchhcccccccceeeeeccccCCccchhhhccc
Confidence            99  8      999999999974322              2234567999988 3       66665             


Q ss_pred             -------cce-EEEEcCcchhHHhhhcCcccCCHHHHHHHHHHhccCCCCcch----hHHHHHHHHHcCCCCHHHHHHHH
Q 047621          248 -------IKF-KYIVSDCDSVDVLYNSQHYTKTPEEAAAKSILAGLDLNCGSF----LGKHTEAAVKAGLVNESAIDHAI  315 (550)
Q Consensus       248 -------Lgf-G~v~sD~~~m~~~~~~~~~~~~~~~a~~~ai~AG~Dl~~~~~----~~~~l~~av~~g~i~~~~ld~a~  315 (550)
                             ||| |+|||||+.|+++...+    +..+++++|++||+||+|...    ..+.|.++|++|.++++|||+|+
T Consensus       218 ~~lLR~~lgf~G~viSD~~~m~~~~~~~----~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~ld~av  293 (299)
T PF00933_consen  218 TDLLRNELGFDGVVISDDLEMGALSSNY----SIEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRISEERLDEAV  293 (299)
T ss_dssp             CCCCCCCS---SEEEESTTTSHHHHCCT----THHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSGHHHHHHHH
T ss_pred             hhhCcCcccCCCeEecccchHHHHHhcc----ccchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCCHHHHHHHH
Confidence                   699 99999999999997632    378999999999999998632    25899999999999999999999


Q ss_pred             HHHHHH
Q 047621          316 SNNFAT  321 (550)
Q Consensus       316 ~ril~~  321 (550)
                      +|||++
T Consensus       294 ~RIl~~  299 (299)
T PF00933_consen  294 RRILRL  299 (299)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999975


No 5  
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00  E-value=4.3e-36  Score=310.36  Aligned_cols=198  Identities=20%  Similarity=0.209  Sum_probs=160.6

Q ss_pred             CCCcccccccccccccccCCCccccCCCCCCCcCchHHHHHhhcC------HHHHHHHHHHHHHHHHHhhhcCCcccee-
Q 047621           91 GIPKYEWWSEALHGVSYVGPGTHFSNVVPGATSFPQVILTAASFN------ASLFQAIGKVVSTEARAMYNVGLAGLTF-  163 (550)
Q Consensus        91 gip~~~~~~d~~~Gv~~~~~g~~~~~~~~~~t~fP~~~~laAt~d------~~l~~~~g~~~~~E~ra~~~~g~~Gi~~-  163 (550)
                      ++|++ ++.|+++|..+     ++   ..+.|.||+++++|+|||      +++++++|+++|+|+|++      |||+ 
T Consensus        54 ~~pll-i~iD~EgG~v~-----rl---~~~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~------Gin~~  118 (337)
T PRK05337         54 RPPLL-IAVDQEGGRVQ-----RF---REGFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRAC------GIDLS  118 (337)
T ss_pred             CCCCE-EEEecCCCEee-----ec---CCCCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHh------CCCcc
Confidence            57888 78999998632     22   236899999999999999      999999999999999999      8888 


Q ss_pred             eccccccCCCCCCCccCCCCCCCHHHHHHHHHHHHHHhccCCCCCCCCceEEEeecccccccCCCCCC------------
Q 047621          164 WSPNINIFRDPRWGRGQETPGEDPLLASKYATGYVKGLQQTDGGSPNRLKVAACCKHYTAYDLDNWKG------------  231 (550)
Q Consensus       164 ~aP~vdi~r~P~~gr~~e~~geDp~lv~~~a~a~v~Glq~~~~G~~~~~~v~a~~KHFpg~~~~~~~~------------  231 (550)
                      |+||+||.+++.| ++.|+|||||++|++|+.+|++|||+.  |      |++|+|||||||.+..+.            
T Consensus       119 ~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~--g------v~~~~KHFpG~G~~~~dsh~~~~~~~~~~~  189 (337)
T PRK05337        119 FAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAA--G------MAATGKHFPGHGAVEADSHVETPVDERPLE  189 (337)
T ss_pred             ccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHC--C------CEEEecccCCCCCCcCCCCCCCCCCCCCHH
Confidence            9999999854444 678999999999999999999999998  8      999999999999874332            


Q ss_pred             ----cccccchhhhh-------cc---ccc--------------------cce-EEEEcCcchhHHhhhcCcccCCHHHH
Q 047621          232 ----TDRYHFNAMVI-------YT---YYL--------------------IKF-KYIVSDCDSVDVLYNSQHYTKTPEEA  276 (550)
Q Consensus       232 ----~~~~~f~a~v~-------~s---yn~--------------------Lgf-G~v~sD~~~m~~~~~~~~~~~~~~~a  276 (550)
                          .+..||+.+|.       ++   |+.                    ||| |+|||||++|+++..    ..+.+++
T Consensus       190 el~~~~l~PF~~ai~~g~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~----~~~~~~~  265 (337)
T PRK05337        190 EIRAEDMAPFRALIAAGLDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV----AGDYAER  265 (337)
T ss_pred             HHHhhhHHHHHHHHhcCCCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh----cCCHHHH
Confidence                23468887764       44   554                    699 999999999987542    3468899


Q ss_pred             HHHHHHhccCCCCcc---hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 047621          277 AAKSILAGLDLNCGS---FLGKHTEAAVKAGLVNESAIDHAISNNFATLMR  324 (550)
Q Consensus       277 ~~~ai~AG~Dl~~~~---~~~~~l~~av~~g~i~~~~ld~a~~ril~~k~~  324 (550)
                      +++|++||+||+|..   .....+.+++.+        +.+.+|+.+++.+
T Consensus       266 ~~~al~AG~Dl~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~  308 (337)
T PRK05337        266 AQAALDAGCDMVLVCNNRDGAVSVLDNLSP--------PISAERLTRLYGR  308 (337)
T ss_pred             HHHHHHcCCCEEeeCCCHHHHHHHHHHHHh--------hccHHHHHHHhcc
Confidence            999999999998753   234456666644        6677888877765


No 6  
>PF01915 Glyco_hydro_3_C:  Glycosyl hydrolase family 3 C-terminal domain;  InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=99.97  E-value=5.2e-31  Score=259.92  Aligned_cols=180  Identities=39%  Similarity=0.556  Sum_probs=134.3

Q ss_pred             chhcccCCCCCCCCCCCCCeEEEEcCCCccccccccccc-CCCCccCChHhhhcccee---EEEecCCCCccCCchhHHH
Q 047621          362 IVLLKNTAGSLPLSPTAIKNLAVIGPNANVTKTMIGNYE-GTPCKYTTPLQGLAAVVA---TIYQAGCSNVQCGTAQVDD  437 (550)
Q Consensus       362 ivLLKN~~~~LPL~~~~~~kVaviG~~a~~~~~~~G~~~-g~~~~~~t~~~~l~~~~~---~~~~~g~~~~~~~~~~~~~  437 (550)
                      ||||||++++|||++++. ||+|+|+.+.....++|++. ..+.+..+++++|++++.   +.+..++ ....+...+++
T Consensus         1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~   78 (227)
T PF01915_consen    1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGG-DAVDDDEGIDE   78 (227)
T ss_dssp             -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCC-CCCCCCSCHHH
T ss_pred             CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeec-cccccccchHH
Confidence            799999999999998743 99999999988665555443 356667899999998852   2222211 11123567788


Q ss_pred             HHHHhhhCCeeEEecCCCCcccccc--------CCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCCeeecccccCCCC
Q 047621          438 AKKAAASADATVLVMGADQSIEAES--------HDRLDLLLPGQQQLLITEVAKVAKGPVILIIMSGGGFDISFAKNDPK  509 (550)
Q Consensus       438 a~~~a~~aD~vIv~~g~~~~~~~Eg--------~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl~~~~~~~~  509 (550)
                      +.+.++++|++||++|   +.++||        .||.++.++..|++||+++++++ +|+|||+++++||++.++.  ++
T Consensus        79 ~~~~~~~aD~vIv~~~---~~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~~  152 (227)
T PF01915_consen   79 AVAAAKEADVVIVFVG---RPSGEGNDNNTEGESDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--DN  152 (227)
T ss_dssp             HHHHHHCSSEEEEEEE---TTSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--HC
T ss_pred             HHHHhhcCCEEEEecc---ccccccccccccccCCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--hh
Confidence            8999999999999999   334444        59999999999999999998764 6789999999999997765  38


Q ss_pred             CcEEEEcCCCChhHHHHHHHHhcCCCCCCccCccccCCCC
Q 047621          510 ITSILWVGYPGQAGGAAIADVCFGRYNPSGRLPMTWYPQS  549 (550)
Q Consensus       510 v~ail~a~~pG~~gg~AiadVL~G~~nPsGkLPvT~~~~~  549 (550)
                      ++||||+|++|+++++|++|||||++||+||||+||+++.
T Consensus       153 ~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~p~~~  192 (227)
T PF01915_consen  153 VDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTIPKSM  192 (227)
T ss_dssp             -SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-BESSG
T ss_pred             hceEeeccccchHHHHHHHHHHcCCCCCCCCcceeccCCh
Confidence            9999999999999999999999999999999999998763


No 7  
>COG1160 Predicted GTPases [General function prediction only]
Probab=60.67  E-value=22  Score=38.43  Aligned_cols=47  Identities=21%  Similarity=0.302  Sum_probs=33.2

Q ss_pred             HHHHHHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEec
Q 047621          436 DDAKKAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVAKGPVILIIMS  495 (550)
Q Consensus       436 ~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~~  495 (550)
                      +++..++.+||++|+++....            .+.+...++.+.+. ..+||+|+|+|-
T Consensus        75 ~Qa~~Ai~eADvilfvVD~~~------------Git~~D~~ia~~Lr-~~~kpviLvvNK  121 (444)
T COG1160          75 EQALIAIEEADVILFVVDGRE------------GITPADEEIAKILR-RSKKPVILVVNK  121 (444)
T ss_pred             HHHHHHHHhCCEEEEEEeCCC------------CCCHHHHHHHHHHH-hcCCCEEEEEEc
Confidence            456778899999999996321            23455556666665 456899999873


No 8  
>PF06858 NOG1:  Nucleolar GTP-binding protein 1 (NOG1);  InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=55.38  E-value=41  Score=25.78  Aligned_cols=42  Identities=24%  Similarity=0.330  Sum_probs=24.8

Q ss_pred             hCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhC-CCCEEEEEe
Q 047621          444 SADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVA-KGPVILIIM  494 (550)
Q Consensus       444 ~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~-~~pvVvVl~  494 (550)
                      =.++|++++...   +.=|.      -.++|..|.+++.... ++|+|+|++
T Consensus        13 L~~~ilfi~D~S---e~CGy------sie~Q~~L~~~ik~~F~~~P~i~V~n   55 (58)
T PF06858_consen   13 LADAILFIIDPS---EQCGY------SIEEQLSLFKEIKPLFPNKPVIVVLN   55 (58)
T ss_dssp             T-SEEEEEE-TT----TTSS-------HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred             hcceEEEEEcCC---CCCCC------CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            456777776522   11111      2368999999998776 689888875


No 9  
>PF00056 Ldh_1_N:  lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase;  InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle.  This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=53.51  E-value=4.6  Score=36.64  Aligned_cols=55  Identities=25%  Similarity=0.445  Sum_probs=31.8

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHH----HHHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQL----LITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~----li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..+++|++|++.|...   .+|.+|.++.  ....+    +..++.+.+++.+++|+  .+|+|+
T Consensus        65 ~~~~~aDivvitag~~~---~~g~sR~~ll--~~N~~i~~~~~~~i~~~~p~~~vivv--tNPvd~  123 (141)
T PF00056_consen   65 EALKDADIVVITAGVPR---KPGMSRLDLL--EANAKIVKEIAKKIAKYAPDAIVIVV--TNPVDV  123 (141)
T ss_dssp             GGGTTESEEEETTSTSS---STTSSHHHHH--HHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHH
T ss_pred             cccccccEEEEeccccc---cccccHHHHH--HHhHhHHHHHHHHHHHhCCccEEEEe--CCcHHH
Confidence            44679999999998542   3445554332  22233    44455555555544443  689986


No 10 
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=52.38  E-value=13  Score=38.84  Aligned_cols=59  Identities=25%  Similarity=0.249  Sum_probs=34.6

Q ss_pred             HHHhhhCCeeEEecCCCCccccccCCCCCCCCC--HHHHHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          439 KKAAASADATVLVMGADQSIEAESHDRLDLLLP--GQQQLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       439 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp--~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      .+..+.||+||++.|...   .+|.+|.++.-.  .--++++.++.+.+++..|+++. +||+|+
T Consensus        74 ~~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv  134 (323)
T TIGR01759        74 EEAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANT  134 (323)
T ss_pred             HHHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence            356789999999999642   355566443211  11234555666655423444443 599987


No 11 
>PRK05442 malate dehydrogenase; Provisional
Probab=49.77  E-value=12  Score=39.15  Aligned_cols=57  Identities=23%  Similarity=0.243  Sum_probs=32.4

Q ss_pred             HHHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHH----HHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          439 KKAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQ----LLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       439 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~----~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      .+..++||+||++.|...   .+|.+|.++.  ....    ++..++.+..++..++++ .+||+|+
T Consensus        75 y~~~~daDiVVitaG~~~---k~g~tR~dll--~~Na~i~~~i~~~i~~~~~~~~iiiv-vsNPvDv  135 (326)
T PRK05442         75 NVAFKDADVALLVGARPR---GPGMERKDLL--EANGAIFTAQGKALNEVAARDVKVLV-VGNPANT  135 (326)
T ss_pred             HHHhCCCCEEEEeCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEEE-eCCchHH
Confidence            356789999999998542   3455664432  2222    344455543322333333 3699987


No 12 
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=49.12  E-value=15  Score=38.15  Aligned_cols=58  Identities=26%  Similarity=0.328  Sum_probs=34.9

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCC--HHHHHHHHHHHhhCCCCEEEEEecCCeeecc
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLP--GQQQLLITEVAKVAKGPVILIIMSGGGFDIS  502 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp--~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl~  502 (550)
                      +..+.||+||++.|...   ..|.+|.+|.-.  .-..++.+++.+.+++-.|+|  ..||+|+.
T Consensus        65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlV--vtNPvD~~  124 (313)
T COG0039          65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLV--VTNPVDIL  124 (313)
T ss_pred             hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEE--ecCcHHHH
Confidence            45689999999999653   455566544211  123345566666555433333  36899873


No 13 
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=47.96  E-value=14  Score=38.25  Aligned_cols=56  Identities=21%  Similarity=0.249  Sum_probs=32.3

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQ----QLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q----~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..+.+|+||++.|...   .+|.+|.++.  ...    ++++.++.+..++..++++ .+||+|+
T Consensus        56 ~~~~daDiVVitaG~~~---k~g~tR~dll--~~N~~I~~~i~~~i~~~a~~~~iviv-vtNPvDv  115 (313)
T TIGR01756        56 EAFKDIDCAFLVASVPL---KPGEVRADLL--TKNTPIFKATGEALSEYAKPTVKVLV-IGNPVNT  115 (313)
T ss_pred             HHhCCCCEEEECCCCCC---CcCCCHHHHH--HHHHHHHHHHHHHHHhhCCCCeEEEE-eCCchHH
Confidence            45789999999999642   3455664322  222    2344555554433243333 4699987


No 14 
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=45.79  E-value=86  Score=34.02  Aligned_cols=60  Identities=23%  Similarity=0.280  Sum_probs=35.4

Q ss_pred             hhHHHHHHHhhh--CCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCCeeecccc
Q 047621          433 AQVDDAKKAAAS--ADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVAKGPVILIIMSGGGFDISFA  504 (550)
Q Consensus       433 ~~~~~a~~~a~~--aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl~~~  504 (550)
                      ..+..+...+..  .|++|++=|.-+        ..+| ++=++.+++.++++ ++.|||.-  -|.=.|.+..
T Consensus       179 ~~i~~al~~~~~~~~Dviii~RGGGS--------~eDL-~~Fn~e~v~~ai~~-~~~Pvis~--IGHE~D~tl~  240 (438)
T PRK00286        179 ASIVAAIERANARGEDVLIVARGGGS--------LEDL-WAFNDEAVARAIAA-SRIPVISA--VGHETDFTIA  240 (438)
T ss_pred             HHHHHHHHHhcCCCCCEEEEecCCCC--------HHHh-hccCcHHHHHHHHc-CCCCEEEe--ccCCCCccHH
Confidence            344455554544  599998777321        1122 12345678999985 68896543  3777776544


No 15 
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=45.48  E-value=13  Score=39.63  Aligned_cols=56  Identities=18%  Similarity=0.221  Sum_probs=31.2

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHH----HHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLL----ITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~l----i~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..+++|+||++.|...   .+|.+|.++.  ....++    ..++.+..++..+++ +.+||+|+
T Consensus       116 ~~~kdaDIVVitAG~pr---kpg~tR~dll--~~N~~I~k~i~~~I~~~a~~~~ivi-VVsNPvDv  175 (387)
T TIGR01757       116 EVFEDADWALLIGAKPR---GPGMERADLL--DINGQIFADQGKALNAVASKNCKVL-VVGNPCNT  175 (387)
T ss_pred             HHhCCCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEE-EcCCcHHH
Confidence            56789999999998642   3455664322  222333    344444232233333 34699987


No 16 
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=43.25  E-value=1.2e+02  Score=33.01  Aligned_cols=133  Identities=18%  Similarity=0.190  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCccccchHHHHHHHHHHHhcchhcccCCCCCCCCCCCCCeEEEEcC
Q 047621          308 ESAIDHAISNNFATLMRLGFFDGHPSKQPYGQLGPKDVCTQANQDLALDAARQGIVLLKNTAGSLPLSPTAIKNLAVIGP  387 (550)
Q Consensus       308 ~~~ld~a~~ril~~k~~~glf~~~p~~~~~~~~~~~~v~~~~h~~la~eaA~~sivLLKN~~~~LPL~~~~~~kVaviG~  387 (550)
                      .-.+..+...+.+...+-|+||.+.                                    ..-||.-+   ++|+||..
T Consensus        97 ~G~l~~~~~~lk~~L~~eGlfd~~~------------------------------------k~~lP~~p---~~i~vits  137 (432)
T TIGR00237        97 EGLLQLAYEQLKEKLAAEGLFDQEY------------------------------------KKPLPHFP---KRVGVITS  137 (432)
T ss_pred             hHHHHHHHHHHHHHHHHCCCCCchh------------------------------------cCCCCCCC---CEEEEEeC
Confidence            4566777777777777779998321                                    12366554   49999874


Q ss_pred             CCcccccccccccCCCCccCChHhhhccce---eEEEecCCCCccCCchhHHHHHHHhhh---CCeeEEecCCCCccccc
Q 047621          388 NANVTKTMIGNYEGTPCKYTTPLQGLAAVV---ATIYQAGCSNVQCGTAQVDDAKKAAAS---ADATVLVMGADQSIEAE  461 (550)
Q Consensus       388 ~a~~~~~~~G~~~g~~~~~~t~~~~l~~~~---~~~~~~g~~~~~~~~~~~~~a~~~a~~---aD~vIv~~g~~~~~~~E  461 (550)
                      .....             ...++.-++.++   ++...+-.--.......+..+...+..   .|++|++=|.-+     
T Consensus       138 ~~~aa-------------~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs-----  199 (432)
T TIGR00237       138 QTGAA-------------LADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS-----  199 (432)
T ss_pred             CccHH-------------HHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC-----
Confidence            43221             122344444332   222222110000112334444443333   699998777322     


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCCeeecccc
Q 047621          462 SHDRLDLLLPGQQQLLITEVAKVAKGPVILIIMSGGGFDISFA  504 (550)
Q Consensus       462 g~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl~~~  504 (550)
                         ..+| ++=++.+++.++++ ++.|||.-  -|.=.|.+..
T Consensus       200 ---~eDL-~~Fn~e~~~rai~~-~~~Pvis~--iGHe~D~ti~  235 (432)
T TIGR00237       200 ---LEDL-WSFNDEKVARAIFL-SKIPIISA--VGHETDFTIS  235 (432)
T ss_pred             ---HHHh-hhcCcHHHHHHHHc-CCCCEEEe--cCcCCCccHH
Confidence               1122 22345678889974 78896543  3777776544


No 17 
>PF10662 PduV-EutP:  Ethanolamine utilisation - propanediol utilisation;  InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=43.21  E-value=1.8e+02  Score=26.56  Aligned_cols=77  Identities=22%  Similarity=0.288  Sum_probs=41.3

Q ss_pred             HHHHHHHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCCeeecc-----------c
Q 047621          435 VDDAKKAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVAKGPVILIIMSGGGFDIS-----------F  503 (550)
Q Consensus       435 ~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl~-----------~  503 (550)
                      .......+.+||+|+++......         .-.+|+.       .+....+|||-|+.-   +|+.           |
T Consensus        54 y~aLi~ta~dad~V~ll~dat~~---------~~~~pP~-------fa~~f~~pvIGVITK---~Dl~~~~~~i~~a~~~  114 (143)
T PF10662_consen   54 YHALIVTAQDADVVLLLQDATEP---------RSVFPPG-------FASMFNKPVIGVITK---IDLPSDDANIERAKKW  114 (143)
T ss_pred             HHHHHHHHhhCCEEEEEecCCCC---------CccCCch-------hhcccCCCEEEEEEC---ccCccchhhHHHHHHH
Confidence            34456678899999998864321         1123443       233345788866652   3333           2


Q ss_pred             ccCCCCCcEEEEcCCCChhHHHHHHHHh
Q 047621          504 AKNDPKITSILWVGYPGQAGGAAIADVC  531 (550)
Q Consensus       504 ~~~~~~v~ail~a~~pG~~gg~AiadVL  531 (550)
                      +. ...++-|...-....+|.+.+.+-|
T Consensus       115 L~-~aG~~~if~vS~~~~eGi~eL~~~L  141 (143)
T PF10662_consen  115 LK-NAGVKEIFEVSAVTGEGIEELKDYL  141 (143)
T ss_pred             HH-HcCCCCeEEEECCCCcCHHHHHHHH
Confidence            21 1234445555555556666666654


No 18 
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=41.09  E-value=1e+02  Score=28.73  Aligned_cols=41  Identities=37%  Similarity=0.480  Sum_probs=28.6

Q ss_pred             hhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          442 AASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       442 a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      ...+|+++|.+|.                 +.|..++.+..+..+.++  ++..|+.+|.
T Consensus        97 ~~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~v--~~~vG~~~d~  137 (171)
T cd06533          97 ASGADILFVGLGA-----------------PKQELWIARHKDRLPVPV--AIGVGGSFDF  137 (171)
T ss_pred             HcCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCCE--EEEeceeeEe
Confidence            3568999999983                 458889998877654443  3344777775


No 19 
>cd00938 HisRS_RNA HisRS_RNA binding domain.  This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=40.39  E-value=68  Score=23.26  Aligned_cols=30  Identities=17%  Similarity=0.209  Sum_probs=25.6

Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Q 047621          297 TEAAVKAGLVNESAIDHAISNNFATLMRLG  326 (550)
Q Consensus       297 l~~av~~g~i~~~~ld~a~~ril~~k~~~g  326 (550)
                      ....+++..-+.+.|+..|..+|.+|..+|
T Consensus        13 ~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg   42 (45)
T cd00938          13 LVRKLKAEKASKEQIAEEVAKLLELKAQLG   42 (45)
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence            445566777889999999999999999987


No 20 
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=40.38  E-value=18  Score=39.37  Aligned_cols=55  Identities=16%  Similarity=0.218  Sum_probs=31.7

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHH----HHHHHHHh-hCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQ----LLITEVAK-VAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~----~li~~v~~-~~~~pvVvVl~~g~P~dl  501 (550)
                      +..++||+||++.|...   .+|.+|.++.  ....    ++.+++.+ +.++ .+++ +.+||+|+
T Consensus       172 e~~kdaDiVVitAG~pr---kpG~tR~dLl--~~N~~I~k~i~~~I~~~a~p~-~ivI-VVsNPvDv  231 (444)
T PLN00112        172 EVFQDAEWALLIGAKPR---GPGMERADLL--DINGQIFAEQGKALNEVASRN-VKVI-VVGNPCNT  231 (444)
T ss_pred             HHhCcCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhcCCC-eEEE-EcCCcHHH
Confidence            55789999999998542   4556664432  2222    33444544 2333 3333 34699987


No 21 
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=39.28  E-value=31  Score=35.74  Aligned_cols=55  Identities=22%  Similarity=0.277  Sum_probs=31.8

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHH----HHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQ----LLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~----~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..+.+|+||++.|...   .+|.+|.++.  ....    +..+++.+.+++- + +++..||+|+
T Consensus        63 ~~~~daDivvitaG~~~---~~g~~R~dll--~~N~~I~~~i~~~i~~~~p~~-i-iivvsNPvDv  121 (312)
T TIGR01772        63 NALKGADVVVIPAGVPR---KPGMTRDDLF--NVNAGIVKDLVAAVAESCPKA-M-ILVITNPVNS  121 (312)
T ss_pred             HHcCCCCEEEEeCCCCC---CCCccHHHHH--HHhHHHHHHHHHHHHHhCCCe-E-EEEecCchhh
Confidence            45789999999999643   3455664432  2222    3344555544443 3 3334689984


No 22 
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=38.97  E-value=22  Score=37.08  Aligned_cols=57  Identities=23%  Similarity=0.233  Sum_probs=32.8

Q ss_pred             HHHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHH----HHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          439 KKAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQ----LLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       439 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~----~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      .+..++||+||++.|...   .+|.+|.++.  ....    ++..++.+.+++..++++ .+||+|+
T Consensus        73 ~~~~~daDivvitaG~~~---k~g~tR~dll--~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~  133 (322)
T cd01338          73 NVAFKDADWALLVGAKPR---GPGMERADLL--KANGKIFTAQGKALNDVASRDVKVLV-VGNPCNT  133 (322)
T ss_pred             HHHhCCCCEEEEeCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHhhCCCCeEEEE-ecCcHHH
Confidence            356789999999999643   3455664431  2223    344455554422344333 4699987


No 23 
>PLN00135 malate dehydrogenase
Probab=38.96  E-value=26  Score=36.27  Aligned_cols=57  Identities=16%  Similarity=0.207  Sum_probs=32.7

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCC--HHHHHHHHHHHhh-CCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLP--GQQQLLITEVAKV-AKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp--~~Q~~li~~v~~~-~~~pvVvVl~~g~P~dl  501 (550)
                      +..+.||+||++.|...   .+|.+|.++.-.  .--+++++++.+. +++ .++++ .+||+|+
T Consensus        54 ~~~~daDiVVitAG~~~---k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~-aiviv-vsNPvDv  113 (309)
T PLN00135         54 EACKGVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKSQASALEKHAAPD-CKVLV-VANPANT  113 (309)
T ss_pred             HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEE-eCCcHHH
Confidence            55789999999999643   345566433210  1123455566652 333 44333 3699987


No 24 
>PRK05086 malate dehydrogenase; Provisional
Probab=38.84  E-value=27  Score=36.22  Aligned_cols=56  Identities=23%  Similarity=0.252  Sum_probs=32.2

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCH---HHHHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPG---QQQLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~---~Q~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..+.+|+||++.|...   .++.+|.++. ..   --.++++++.+.+.+.+|  ++..||.|+
T Consensus        65 ~~l~~~DiVIitaG~~~---~~~~~R~dll-~~N~~i~~~ii~~i~~~~~~~iv--ivvsNP~D~  123 (312)
T PRK05086         65 PALEGADVVLISAGVAR---KPGMDRSDLF-NVNAGIVKNLVEKVAKTCPKACI--GIITNPVNT  123 (312)
T ss_pred             HHcCCCCEEEEcCCCCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHhCCCeEE--EEccCchHH
Confidence            44578999999999643   2334554331 11   234556666655444333  334799974


No 25 
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=38.78  E-value=21  Score=36.64  Aligned_cols=57  Identities=32%  Similarity=0.404  Sum_probs=33.4

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCC--HHHHHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLP--GQQQLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp--~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..+.||++|++.|...   .+|.+|.++..-  +--.++.+++.+.+++ .+ |++.+||.|+
T Consensus        62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~-~~-viv~sNP~d~  120 (300)
T cd00300          62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYGPD-AI-ILVVSNPVDI  120 (300)
T ss_pred             HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eE-EEEccChHHH
Confidence            46789999999999643   355666543221  1123455556554443 33 3344699987


No 26 
>PF10087 DUF2325:  Uncharacterized protein conserved in bacteria (DUF2325);  InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.09  E-value=86  Score=26.19  Aligned_cols=40  Identities=15%  Similarity=0.096  Sum_probs=29.4

Q ss_pred             HHHHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhCCCCEEEE
Q 047621          438 AKKAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVAKGPVILI  492 (550)
Q Consensus       438 a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvV  492 (550)
                      ..+..+++|+||++++.-               ...-...+++.++..++|++.+
T Consensus        42 l~~~i~~aD~VIv~t~~v---------------sH~~~~~vk~~akk~~ip~~~~   81 (97)
T PF10087_consen   42 LPSKIKKADLVIVFTDYV---------------SHNAMWKVKKAAKKYGIPIIYS   81 (97)
T ss_pred             HHHhcCCCCEEEEEeCCc---------------ChHHHHHHHHHHHHcCCcEEEE
Confidence            356678999999999732               2345667888888888997644


No 27 
>PF02601 Exonuc_VII_L:  Exonuclease VII, large subunit;  InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus.  This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.73  E-value=1.2e+02  Score=31.33  Aligned_cols=49  Identities=22%  Similarity=0.277  Sum_probs=30.0

Q ss_pred             hCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCCeeecccc
Q 047621          444 SADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVAKGPVILIIMSGGGFDISFA  504 (550)
Q Consensus       444 ~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl~~~  504 (550)
                      ..|++|++=|.-+        ..+| ++=+..+++.++++ ++.|||.-  -|.=.|.+..
T Consensus        75 ~~Dviii~RGGGs--------~eDL-~~FN~e~varai~~-~~~Pvisa--IGHe~D~ti~  123 (319)
T PF02601_consen   75 DFDVIIIIRGGGS--------IEDL-WAFNDEEVARAIAA-SPIPVISA--IGHETDFTIA  123 (319)
T ss_pred             cccEEEEecCCCC--------hHHh-cccChHHHHHHHHh-CCCCEEEe--cCCCCCchHH
Confidence            4799988777321        1122 12356778999985 67886543  3766666544


No 28 
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=36.66  E-value=30  Score=36.03  Aligned_cols=58  Identities=24%  Similarity=0.280  Sum_probs=30.9

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHH--HHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQ--QLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q--~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..+.+|+||++.|...   .++.+|.++.-.-..  +++...+.+..+...++++. .||+|+
T Consensus        74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~  133 (325)
T cd01336          74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANT  133 (325)
T ss_pred             HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHH
Confidence            55679999999998542   234455332111111  23445555543323444443 589986


No 29 
>PF09851 SHOCT:  Short C-terminal domain;  InterPro: IPR018649  This family of hypothetical prokaryotic proteins has no known function. 
Probab=36.59  E-value=77  Score=20.84  Aligned_cols=26  Identities=8%  Similarity=0.102  Sum_probs=22.6

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHH
Q 047621          294 GKHTEAAVKAGLVNESAIDHAISNNF  319 (550)
Q Consensus       294 ~~~l~~av~~g~i~~~~ld~a~~ril  319 (550)
                      ...|.+...+|.|+++..++.-.+||
T Consensus         5 L~~L~~l~~~G~IseeEy~~~k~~ll   30 (31)
T PF09851_consen    5 LEKLKELYDKGEISEEEYEQKKARLL   30 (31)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence            35688899999999999999988886


No 30 
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=36.36  E-value=31  Score=35.92  Aligned_cols=59  Identities=24%  Similarity=0.229  Sum_probs=32.8

Q ss_pred             HHHhhhCCeeEEecCCCCccccccCCCCCCCCC--HHHHHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          439 KKAAASADATVLVMGADQSIEAESHDRLDLLLP--GQQQLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       439 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp--~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      .+..+.+|+||++.|...   .+|.+|.++...  .--+++..++.+..+...++++ .+||+|+
T Consensus        71 ~~~~~~aDiVVitAG~~~---~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~  131 (323)
T cd00704          71 EEAFKDVDVAILVGAFPR---KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLV-VGNPANT  131 (323)
T ss_pred             HHHhCCCCEEEEeCCCCC---CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEE-eCCcHHH
Confidence            356789999999998542   345566443211  0123445556554222344343 3699986


No 31 
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.06  E-value=29  Score=35.94  Aligned_cols=55  Identities=27%  Similarity=0.323  Sum_probs=31.9

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQ----QLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q----~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..+.+|+||++.|...   .+|.+|.++.  ...    .++++++.+.+++- + |++..||+|+
T Consensus        64 ~~~~daDivvitaG~~~---k~g~tR~dll--~~N~~i~~~i~~~i~~~~p~a-~-vivvtNPvDv  122 (310)
T cd01337          64 KALKGADVVVIPAGVPR---KPGMTRDDLF--NINAGIVRDLATAVAKACPKA-L-ILIISNPVNS  122 (310)
T ss_pred             HhcCCCCEEEEeCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCCe-E-EEEccCchhh
Confidence            55789999999999643   2344554332  222    23445555544443 3 3334699987


No 32 
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=34.16  E-value=38  Score=34.96  Aligned_cols=57  Identities=21%  Similarity=0.334  Sum_probs=30.6

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCC--HHHHHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLP--GQQQLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp--~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..+.||++|++.|...   .++.+|.++.--  ..-.+.++++.+.+++.+| ++. ++|+|+
T Consensus        68 ~~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~v-iv~-~npvd~  126 (309)
T cd05294          68 SDVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKI-LVV-TNPVDV  126 (309)
T ss_pred             HHhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEE-EEe-CCchHH
Confidence            34789999999999643   344455332100  0112334445544444333 333 589975


No 33 
>cd01857 HSR1_MMR1 HSR1/MMR1.  Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=32.88  E-value=83  Score=27.97  Aligned_cols=19  Identities=16%  Similarity=0.223  Sum_probs=14.7

Q ss_pred             HHHHHHhhhCCeeEEecCC
Q 047621          436 DDAKKAAASADATVLVMGA  454 (550)
Q Consensus       436 ~~a~~~a~~aD~vIv~~g~  454 (550)
                      .++...++.+|++++++..
T Consensus         3 ~~~~~~i~~aD~vl~ViD~   21 (141)
T cd01857           3 RQLWRVVERSDIVVQIVDA   21 (141)
T ss_pred             HHHHHHHhhCCEEEEEEEc
Confidence            4567778899999988853


No 34 
>PLN02602 lactate dehydrogenase
Probab=31.84  E-value=34  Score=36.08  Aligned_cols=55  Identities=31%  Similarity=0.472  Sum_probs=31.9

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHH----HHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQ----LLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~----~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..++||+||++.|...   .+|.+|.++.  ....    ++++++.+.+++- ++++ ..||.|+
T Consensus       101 ~~~~daDiVVitAG~~~---k~g~tR~dll--~~N~~I~~~i~~~I~~~~p~~-iviv-vtNPvdv  159 (350)
T PLN02602        101 AVTAGSDLCIVTAGARQ---IPGESRLNLL--QRNVALFRKIIPELAKYSPDT-ILLI-VSNPVDV  159 (350)
T ss_pred             HHhCCCCEEEECCCCCC---CcCCCHHHHH--HHHHHHHHHHHHHHHHHCCCe-EEEE-ecCchHH
Confidence            34689999999999643   3455664432  2222    3445555544443 3333 3589987


No 35 
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=31.64  E-value=36  Score=35.10  Aligned_cols=53  Identities=19%  Similarity=0.321  Sum_probs=29.8

Q ss_pred             hhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHH----HHHHHhhCCCCEEEEEecCCeeec
Q 047621          442 AASADATVLVMGADQSIEAESHDRLDLLLPGQQQLL----ITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       442 a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~l----i~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      .+++|++|+++|...   .+|.+|.++  -....++    ++++.+.+++.+|++  ..||.|+
T Consensus        67 ~~~aDiVIitag~p~---~~~~sR~~l--~~~N~~iv~~i~~~I~~~~p~~~iIv--~tNP~di  123 (305)
T TIGR01763        67 TANSDIVVITAGLPR---KPGMSREDL--LSMNAGIVREVTGRIMEHSPNPIIVV--VSNPLDA  123 (305)
T ss_pred             hCCCCEEEEcCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHHCCCeEEEE--ecCcHHH
Confidence            578999999999653   233344322  1223333    444555444443333  3689987


No 36 
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=31.33  E-value=33  Score=35.31  Aligned_cols=55  Identities=29%  Similarity=0.452  Sum_probs=32.2

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQ----QLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q----~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..++||+||++.|...   .+|.+|.++.  ...    +++..++.+.+++ .+ |++.+||.|+
T Consensus        60 ~~~~daDivVitag~~r---k~g~~R~dll--~~N~~i~~~~~~~i~~~~p~-~~-vivvsNP~d~  118 (299)
T TIGR01771        60 SDCKDADLVVITAGAPQ---KPGETRLELV--GRNVRIMKSIVPEVVKSGFD-GI-FLVATNPVDI  118 (299)
T ss_pred             HHHCCCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCC-eE-EEEeCCHHHH
Confidence            45789999999998643   3455664332  222    2345555554433 33 3344699976


No 37 
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=31.30  E-value=32  Score=35.53  Aligned_cols=57  Identities=23%  Similarity=0.310  Sum_probs=30.7

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHH----HHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLL----ITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~l----i~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..++||+||++.|... .  .|.+|..+.|=....++    +.++.+.+++- +++ +..||+|+
T Consensus        64 ~~~~~aDivvitaG~~~-k--pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~-i~i-vvsNPvDv  124 (307)
T cd05290          64 DDCADADIIVITAGPSI-D--PGNTDDRLDLAQTNAKIIREIMGNITKVTKEA-VII-LITNPLDI  124 (307)
T ss_pred             HHhCCCCEEEECCCCCC-C--CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCe-EEE-EecCcHHH
Confidence            55789999999998643 2  23332112222223333    44555544443 333 34689987


No 38 
>PF02450 LCAT:  Lecithin:cholesterol acyltransferase;  InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=30.81  E-value=61  Score=34.61  Aligned_cols=60  Identities=27%  Similarity=0.253  Sum_probs=43.0

Q ss_pred             HHHHHHHHhhCCCCEEEEEec-CCeeecccccCC-------CCCcEEEEcCCCChhHHHHHHHHhcCC
Q 047621          475 QLLITEVAKVAKGPVILIIMS-GGGFDISFAKND-------PKITSILWVGYPGQAGGAAIADVCFGR  534 (550)
Q Consensus       475 ~~li~~v~~~~~~pvVvVl~~-g~P~dl~~~~~~-------~~v~ail~a~~pG~~gg~AiadVL~G~  534 (550)
                      +++|++..+.+++|||+|.+| |+++...++...       ..|+.+|...-|=..+.+|+..+++|+
T Consensus       107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~  174 (389)
T PF02450_consen  107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGD  174 (389)
T ss_pred             HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhh
Confidence            356666655567789888886 667665554322       358898888877666778999999998


No 39 
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=29.59  E-value=46  Score=34.72  Aligned_cols=56  Identities=23%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHH----HHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQ----LLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~----~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..+.+|+||+..|...   .++.+|.++.  ....    ++..++.+.+++..|+++. +||+|+
T Consensus        71 ~~~~~aDiVVitAG~~~---~~~~tr~~ll--~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv  130 (324)
T TIGR01758        71 VAFTDVDVAILVGAFPR---KEGMERRDLL--SKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANT  130 (324)
T ss_pred             HHhCCCCEEEEcCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence            55789999999998642   2344553321  2222    3445555542223444443 599987


No 40 
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=29.11  E-value=34  Score=35.15  Aligned_cols=54  Identities=24%  Similarity=0.394  Sum_probs=30.9

Q ss_pred             HhhhCCeeEEecCCCCccccccCCCCCCCCCHHHH----HHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          441 AAASADATVLVMGADQSIEAESHDRLDLLLPGQQQ----LLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       441 ~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~----~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      ..+.+|++|++.|...   .+|.+|.++.  ..-.    ++.+++.+.+++ .+ |++.+||+|+
T Consensus        65 ~l~~aDIVIitag~~~---~~g~~R~dll--~~N~~i~~~~~~~i~~~~~~-~~-vivvsNP~d~  122 (306)
T cd05291          65 DCKDADIVVITAGAPQ---KPGETRLDLL--EKNAKIMKSIVPKIKASGFD-GI-FLVASNPVDV  122 (306)
T ss_pred             HhCCCCEEEEccCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCC-eE-EEEecChHHH
Confidence            3589999999999643   3455664332  2222    334445554443 33 3334699986


No 41 
>PTZ00325 malate dehydrogenase; Provisional
Probab=28.63  E-value=45  Score=34.71  Aligned_cols=57  Identities=21%  Similarity=0.242  Sum_probs=33.1

Q ss_pred             HHHhhhCCeeEEecCCCCccccccCCCCCCCCCH---HHHHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          439 KKAAASADATVLVMGADQSIEAESHDRLDLLLPG---QQQLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       439 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~---~Q~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      .+..+.+|+||++.|...   .++.+|.++ +..   .-.++++++.+...+.+|+  ++.+|+|.
T Consensus        71 ~~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~~~~~ivi--v~SNPvdv  130 (321)
T PTZ00325         71 EKALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASSAPKAIVG--IVSNPVNS  130 (321)
T ss_pred             HHHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHCCCeEEE--EecCcHHH
Confidence            356789999999999643   233344333 222   2335566666554444433  34689987


No 42 
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=27.17  E-value=43  Score=34.69  Aligned_cols=55  Identities=25%  Similarity=0.381  Sum_probs=31.4

Q ss_pred             HHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHH----HHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          440 KAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQ----LLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       440 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~----~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      +..+.||+||++.|...   .+|.+|.++.  ....    +++.++.+.+.+-+  |++.+||.|+
T Consensus        69 ~~~~~adivIitag~~~---k~g~~R~dll--~~N~~i~~~i~~~i~~~~~~~~--vivvsNP~d~  127 (315)
T PRK00066         69 SDCKDADLVVITAGAPQ---KPGETRLDLV--EKNLKIFKSIVGEVMASGFDGI--FLVASNPVDI  127 (315)
T ss_pred             HHhCCCCEEEEecCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCCeE--EEEccCcHHH
Confidence            44689999999998642   3455664332  2222    33445555444433  3334699986


No 43 
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=26.29  E-value=2.6e+02  Score=26.22  Aligned_cols=19  Identities=21%  Similarity=0.380  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCeEEEEcCCC
Q 047621          371 SLPLSPTAIKNLAVIGPNA  389 (550)
Q Consensus       371 ~LPL~~~~~~kVaviG~~a  389 (550)
                      +||....+..+|.++|...
T Consensus         2 ~~~~~~~~~~~iv~~GDSi   20 (191)
T PRK10528          2 LLTFRAAAADTLLILGDSL   20 (191)
T ss_pred             ccccccCCCCEEEEEeCch
Confidence            4777766677999999544


No 44 
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.14  E-value=46  Score=34.48  Aligned_cols=56  Identities=23%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             HhhhCCeeEEecCCCCccccccCCCCCCCCC--HHHHHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          441 AAASADATVLVMGADQSIEAESHDRLDLLLP--GQQQLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       441 ~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp--~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      ..++||+||++.|....   +|.+|.++.--  +--+++++++.+.+++-+| + +..||.|+
T Consensus        68 ~~~~adivvitaG~~~k---~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~v-i-vvsNP~d~  125 (312)
T cd05293          68 VTANSKVVIVTAGARQN---EGESRLDLVQRNVDIFKGIIPKLVKYSPNAIL-L-VVSNPVDI  125 (312)
T ss_pred             HhCCCCEEEECCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE-E-EccChHHH
Confidence            46899999999996532   45566432100  1123445556555444333 3 33689986


No 45 
>PF01926 MMR_HSR1:  50S ribosome-binding GTPase;  InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=25.39  E-value=1.5e+02  Score=24.94  Aligned_cols=45  Identities=18%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             HHHHHHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEe
Q 047621          436 DDAKKAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVAKGPVILIIM  494 (550)
Q Consensus       436 ~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~  494 (550)
                      ....+....+|++|+++..+.            .+.....++++++.  .++|+++|++
T Consensus        71 ~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l~--~~~~~i~v~N  115 (116)
T PF01926_consen   71 RKFLEQISKSDLIIYVVDASN------------PITEDDKNILRELK--NKKPIILVLN  115 (116)
T ss_dssp             HHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred             HHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHHh--cCCCEEEEEc
Confidence            345566688999999996322            11244567778884  5678888875


No 46 
>PRK13556 azoreductase; Provisional
Probab=25.06  E-value=2.2e+02  Score=27.26  Aligned_cols=53  Identities=19%  Similarity=0.255  Sum_probs=35.5

Q ss_pred             HHHHHHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhh---------------CCCCEEEEEecCCee
Q 047621          436 DDAKKAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKV---------------AKGPVILIIMSGGGF  499 (550)
Q Consensus       436 ~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~---------------~~~pvVvVl~~g~P~  499 (550)
                      ++..+..+.||++|++.=..           ++.+|..=+.+|..+...               .+||++++..+|+++
T Consensus        81 ~~~~~~l~~AD~iVi~~P~y-----------n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~  148 (208)
T PRK13556         81 DKYLNQFLEADKVVFAFPLW-----------NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVY  148 (208)
T ss_pred             HHHHHHHHHCCEEEEecccc-----------ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCC
Confidence            34456788999999876321           356777777778777642               246777777777765


No 47 
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=24.87  E-value=1.3e+02  Score=34.91  Aligned_cols=125  Identities=17%  Similarity=0.199  Sum_probs=71.9

Q ss_pred             cCHHHHHHHHHHHHHHHHHhhhcCCccceeeccccccCCCCCCCccCCCCCCCHHHHHHHHHHHHHHhccC-------CC
Q 047621          134 FNASLFQAIGKVVSTEARAMYNVGLAGLTFWSPNINIFRDPRWGRGQETPGEDPLLASKYATGYVKGLQQT-------DG  206 (550)
Q Consensus       134 ~d~~l~~~~g~~~~~E~ra~~~~g~~Gi~~~aP~vdi~r~P~~gr~~e~~geDp~lv~~~a~a~v~Glq~~-------~~  206 (550)
                      -+|+.++++-..+=.-+...      ||++.  =+|+    .+-  -|+.+++..--.+++.+|-+++...       + 
T Consensus       358 v~P~~~~~FYd~~hsyL~s~------GVDgV--KVD~----Q~~--le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~n-  422 (750)
T PLN02684        358 VNPKKVYKFYNELHSYLADA------GIDGV--KVDV----QCI--LETLGAGLGGRVELTRQYHQALDASVARNFPDN-  422 (750)
T ss_pred             cCHHHHHHHHHHHHHHHHHc------CCCeE--EECh----hhh--HHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCC-
Confidence            58899999999888888888      54421  1233    221  2344444433446667777777732       2 


Q ss_pred             CCCCCceEEEeecccccc--cCCC---CC-Ccccccchhh------hhccccccce-EEEEcCcchhHHhhhcCcccCCH
Q 047621          207 GSPNRLKVAACCKHYTAY--DLDN---WK-GTDRYHFNAM------VIYTYYLIKF-KYIVSDCDSVDVLYNSQHYTKTP  273 (550)
Q Consensus       207 G~~~~~~v~a~~KHFpg~--~~~~---~~-~~~~~~f~a~------v~~syn~Lgf-G~v~sD~~~m~~~~~~~~~~~~~  273 (550)
                      |      +++|.-|.|-+  ....   .| +.|-+|.+.+      +.++||.|=. -+|..||+-.+-   .|.++  .
T Consensus       423 g------vI~CMs~~~d~i~~sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyNSLllg~~v~PDWDMFqS---~hp~A--~  491 (750)
T PLN02684        423 G------CIACMSHNTDALYCSKQTAVVRASDDFYPRDPVSHTIHIAAVAYNSVFLGEFMQPDWDMFHS---LHPAA--E  491 (750)
T ss_pred             C------eEEecccCchhhhcccccceeeeccccccCCCccchhhhhhhhhhhhhhccccccCccccee---cCccH--H
Confidence            5      88999888752  1100   01 1122343332      2289999644 578999974432   23333  3


Q ss_pred             HHHHHHHHHhc
Q 047621          274 EEAAAKSILAG  284 (550)
Q Consensus       274 ~~a~~~ai~AG  284 (550)
                      -.|+++||-.|
T Consensus       492 ~HAaaRAisGG  502 (750)
T PLN02684        492 YHASARAISGG  502 (750)
T ss_pred             HHHHHHhhcCC
Confidence            46777877554


No 48 
>PF00009 GTP_EFTU:  Elongation factor Tu GTP binding domain;  InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=24.41  E-value=2.3e+02  Score=26.35  Aligned_cols=48  Identities=17%  Similarity=0.287  Sum_probs=29.6

Q ss_pred             hHHHHHHHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEe
Q 047621          434 QVDDAKKAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVAKGPVILIIM  494 (550)
Q Consensus       434 ~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~  494 (550)
                      ...+.......+|++|+++....     |       +.....+.+..+. ..+.|+|+|++
T Consensus        83 f~~~~~~~~~~~D~ailvVda~~-----g-------~~~~~~~~l~~~~-~~~~p~ivvlN  130 (188)
T PF00009_consen   83 FIKEMIRGLRQADIAILVVDAND-----G-------IQPQTEEHLKILR-ELGIPIIVVLN  130 (188)
T ss_dssp             HHHHHHHHHTTSSEEEEEEETTT-----B-------STHHHHHHHHHHH-HTT-SEEEEEE
T ss_pred             eeecccceecccccceeeeeccc-----c-------ccccccccccccc-ccccceEEeee
Confidence            34555667889999999996432     1       2233344555554 46778888876


No 49 
>PRK13555 azoreductase; Provisional
Probab=24.38  E-value=2.1e+02  Score=27.73  Aligned_cols=53  Identities=15%  Similarity=0.223  Sum_probs=34.0

Q ss_pred             HHHHHHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhh---------------CCCCEEEEEecCCee
Q 047621          436 DDAKKAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKV---------------AKGPVILIIMSGGGF  499 (550)
Q Consensus       436 ~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~---------------~~~pvVvVl~~g~P~  499 (550)
                      ....+..+.||.+|++.=..           ++.+|..=+.+|..|...               .+||++++..+|++|
T Consensus        81 ~~~~~~~~~AD~lvi~~P~~-----------n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~  148 (208)
T PRK13555         81 DQYLNQFLEADKVVFAFPLW-----------NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDY  148 (208)
T ss_pred             HHHHHHHHHcCEEEEEcCcc-----------cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCC
Confidence            44566788999999876321           345666666666666532               246777776667765


No 50 
>PF03808 Glyco_tran_WecB:  Glycosyl transferase WecB/TagA/CpsF family;  InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.58  E-value=2e+02  Score=26.77  Aligned_cols=40  Identities=28%  Similarity=0.403  Sum_probs=28.0

Q ss_pred             hhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCCeeec
Q 047621          443 ASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVAKGPVILIIMSGGGFDI  501 (550)
Q Consensus       443 ~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~~g~P~dl  501 (550)
                      ..+|+++|.+|.                 +.|..++.+..+..+.+  +++..|+.+|.
T Consensus       100 ~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~--v~i~vG~~~d~  139 (172)
T PF03808_consen  100 SGPDIVFVGLGA-----------------PKQERWIARHRQRLPAG--VIIGVGGAFDF  139 (172)
T ss_pred             cCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCC--EEEEECchhhh
Confidence            567888888883                 45888998887766555  33445777765


No 51 
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=22.82  E-value=2.6e+02  Score=27.15  Aligned_cols=53  Identities=19%  Similarity=0.313  Sum_probs=36.6

Q ss_pred             HHHHHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhh---------------CCCCEEEEEecCCeee
Q 047621          437 DAKKAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKV---------------AKGPVILIIMSGGGFD  500 (550)
Q Consensus       437 ~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~---------------~~~pvVvVl~~g~P~d  500 (550)
                      +..+....||.+|++.-.           .++.+|..-+..|..++.+               .+|+++++...|++|.
T Consensus        80 ~l~~ef~aAD~vVi~~PM-----------~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~  147 (202)
T COG1182          80 KLLEEFLAADKVVIAAPM-----------YNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYS  147 (202)
T ss_pred             HHHHHHHhcCeEEEEecc-----------cccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCC
Confidence            345566789999987752           3577888888889888744               2356666666677763


No 52 
>PF09373 PMBR:  Pseudomurein-binding repeat;  InterPro: IPR018975  Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins. 
Probab=22.27  E-value=1.2e+02  Score=20.15  Aligned_cols=25  Identities=12%  Similarity=-0.012  Sum_probs=22.0

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHhCC
Q 047621          303 AGLVNESAIDHAISNNFATLMRLGF  327 (550)
Q Consensus       303 ~g~i~~~~ld~a~~ril~~k~~~gl  327 (550)
                      .|.|+.+++-+++.|+...+.+.|-
T Consensus         2 ~~~i~~~~~~d~a~rv~~f~~~ngR   26 (33)
T PF09373_consen    2 SGTISKEEYLDMASRVNNFYESNGR   26 (33)
T ss_pred             CceecHHHHHHHHHHHHHHHHHcCC
Confidence            4788999999999999999988764


No 53 
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=22.14  E-value=1.2e+02  Score=35.05  Aligned_cols=126  Identities=17%  Similarity=0.188  Sum_probs=73.0

Q ss_pred             cCHHHHHHHHHHHHHHHHHhhhcCCccceeeccccccCCCCCCCccCCCCCCCHHHHHHHHHHHHHHhccC------CCC
Q 047621          134 FNASLFQAIGKVVSTEARAMYNVGLAGLTFWSPNINIFRDPRWGRGQETPGEDPLLASKYATGYVKGLQQT------DGG  207 (550)
Q Consensus       134 ~d~~l~~~~g~~~~~E~ra~~~~g~~Gi~~~aP~vdi~r~P~~gr~~e~~geDp~lv~~~a~a~v~Glq~~------~~G  207 (550)
                      -||+.++++-..+=.-+...      ||++.  =+|+    .+-  -|+.+++..--.+++.+|-++|+..      +.|
T Consensus       367 v~Pe~~~~FY~~~hsyL~s~------GVDgV--KVD~----Q~~--le~l~~g~ggrv~la~~y~~ALe~S~~r~F~~ng  432 (758)
T PLN02355        367 VNPEKVFSFYNELHSYLASA------GIDGV--KVDV----QNI--LETLGAGHGGRVKLARKYHQALEASIARNFPDNG  432 (758)
T ss_pred             cCHHHHHHHHHHHHHHHHHc------CCCeE--EEch----hhh--HHHhhcCCCcHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            38999999999998888888      54421  1233    222  3455544444456788888888764      014


Q ss_pred             CCCCceEEEeecccccccCC-C----CC-Ccccccchhh------hhccccccce-EEEEcCcchhHHhhhcCcccCCHH
Q 047621          208 SPNRLKVAACCKHYTAYDLD-N----WK-GTDRYHFNAM------VIYTYYLIKF-KYIVSDCDSVDVLYNSQHYTKTPE  274 (550)
Q Consensus       208 ~~~~~~v~a~~KHFpg~~~~-~----~~-~~~~~~f~a~------v~~syn~Lgf-G~v~sD~~~m~~~~~~~~~~~~~~  274 (550)
                            +++|.-|.|-+=.. .    .| +.|-+|.+.+      +.++||.|=. -+|..||+-..-   .|.++  .-
T Consensus       433 ------vI~CMs~~~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~~AyNSLllg~~v~PDWDMF~S---~hp~A--~~  501 (758)
T PLN02355        433 ------IISCMSHNTDGLYSAKRTAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHS---LHPMA--EY  501 (758)
T ss_pred             ------eEEecccCchhhcccccceeeeeccccccCCCccCchhhhhhhhhhhhhccccccCccccee---cCccH--HH
Confidence                  88888887742100 0    00 1123344332      2389999644 578999975432   23332  23


Q ss_pred             HHHHHHHHhc
Q 047621          275 EAAAKSILAG  284 (550)
Q Consensus       275 ~a~~~ai~AG  284 (550)
                      +|+++||-.|
T Consensus       502 HAaaRAisGG  511 (758)
T PLN02355        502 HAAARAVGGC  511 (758)
T ss_pred             HHHHHhccCC
Confidence            5777777544


No 54 
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=21.16  E-value=2e+02  Score=31.48  Aligned_cols=48  Identities=31%  Similarity=0.436  Sum_probs=33.2

Q ss_pred             hhHHHHHHHhhhCCeeEEecCCCCccccccCCCCCCCCCHHHHHHHHHHHhhCCCCEEEEEe
Q 047621          433 AQVDDAKKAAASADATVLVMGADQSIEAESHDRLDLLLPGQQQLLITEVAKVAKGPVILIIM  494 (550)
Q Consensus       433 ~~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~Q~~li~~v~~~~~~pvVvVl~  494 (550)
                      ..+..+.+.+++||.|++++....            .++....+++..+  ..++|+++|++
T Consensus       285 iGIeRs~~~i~~ADlvL~v~D~~~------------~~~~~d~~~~~~~--~~~~~~i~v~N  332 (454)
T COG0486         285 IGIERAKKAIEEADLVLFVLDASQ------------PLDKEDLALIELL--PKKKPIIVVLN  332 (454)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCC------------CCchhhHHHHHhc--ccCCCEEEEEe
Confidence            456788899999999999996432            1345555666623  24578888876


No 55 
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=20.34  E-value=84  Score=34.76  Aligned_cols=42  Identities=24%  Similarity=0.235  Sum_probs=30.6

Q ss_pred             cce-EEEEcCcchhHHhhhcCcccCCHHHHHHHHHHhccCCCCc
Q 047621          248 IKF-KYIVSDCDSVDVLYNSQHYTKTPEEAAAKSILAGLDLNCG  290 (550)
Q Consensus       248 Lgf-G~v~sD~~~m~~~~~~~~~~~~~~~a~~~ai~AG~Dl~~~  290 (550)
                      ||| |.|+||+++-+.++-.. ...|+++...---.-|.|+.|.
T Consensus        79 ~~w~g~ilTDSGgfQv~s~g~-~~ltpe~~i~~Q~~iGsDI~~~  121 (487)
T PRK13533         79 LGFDGPIMTDSGSYQLLVYGD-VEVTNEEILEFQRKIGSDIGVP  121 (487)
T ss_pred             hCCCCCeEeccCCcEEEEcCC-ccCCHHHHHHHHHHhCCCEEeE
Confidence            578 99999999887655322 2357877766666689999975


Done!