BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047622
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 23/168 (13%)
Query: 8 LPLGCKFQPSDELLVQFYLFNKISG--TPAPFVDDLVRTENLYGFKEPWQIWRQFGGPD- 64
LP G +F P+D+ LV+ YL K +G P P + ++ +LY F +PW + P+
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV----DLYKF-DPWDL------PER 63
Query: 65 -LEDGEDLYFFTPLKKKSVNGSRIDRRVGTGTWQGEDAGKAVVXXXXXXXXXXXXXXXYE 123
L + YFFTP +K NGSR +R G G W+ A K V
Sbjct: 64 ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAG 123
Query: 124 KDKSPHNGCWIMHEYSL------NPSLLPQNLRSSDLVLCRI--RKNE 163
K WIMHEY L +LR D VLCR+ +KNE
Sbjct: 124 KAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 75/167 (44%), Gaps = 12/167 (7%)
Query: 4 TRPPLPLGCKFQPSDELLVQFYLFNKISGTPAPFVDDLVRTENLYGFKEPWQIWRQFGGP 63
T+ LP G +F P+DE L+ YL K +G F L+ +LY F +PW + P
Sbjct: 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLYKF-DPWVL------P 63
Query: 64 D--LEDGEDLYFFTPLKKKSVNGSRIDRRVGTGTWQGEDAGKAVVXXXXXXXXXXXXXXX 121
+ L ++ YFF+P +K NGSR +R G+G W+ K +
Sbjct: 64 NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFY 123
Query: 122 YEKDKSPHNGCWIMHEYSL-NPSLLPQNLRSSDLVLCRIRKNEDIDQ 167
K WIMHEY L PS + + D VLCRI K + Q
Sbjct: 124 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 170
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 75/167 (44%), Gaps = 12/167 (7%)
Query: 4 TRPPLPLGCKFQPSDELLVQFYLFNKISGTPAPFVDDLVRTENLYGFKEPWQIWRQFGGP 63
T+ LP G +F P+DE L+ YL K +G F L+ +LY F +PW + P
Sbjct: 16 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLYKF-DPWVL------P 66
Query: 64 D--LEDGEDLYFFTPLKKKSVNGSRIDRRVGTGTWQGEDAGKAVVXXXXXXXXXXXXXXX 121
+ L ++ YFF+P +K NGSR +R G+G W+ K +
Sbjct: 67 NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFY 126
Query: 122 YEKDKSPHNGCWIMHEYSL-NPSLLPQNLRSSDLVLCRIRKNEDIDQ 167
K WIMHEY L PS + + D VLCRI K + Q
Sbjct: 127 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 173
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
pdb|3FLV|B Chain B, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
Length = 119
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 8 LPLGCKFQPSDELLVQFYLFNKISGTPAPFVDDLVRTENLYGFKEP-----WQIWRQFGG 62
LP FQP++E++++FY F K T P L R GF +P W W G
Sbjct: 38 LPKNGSFQPTNEMMLKFYSFYK-QATEGPC--KLSRP----GFWDPIGRYKWDAWSSLG- 89
Query: 63 PDLEDGEDLYFFTPLKKKSVNGSRIDRRV 91
D+ E + + KK + + +V
Sbjct: 90 -DMTKEEAMIAYVEEMKKIIETMPMTEKV 117
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
Protein From Bacteroides Thetaiotaomicron
Length = 1000
Score = 27.7 bits (60), Expect = 7.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 226 SMTQEDPHELELSDSHQNMQDTPVTEQNSHEQLQLSAETHQHFTSSDLQEY 276
++ + PH LE+ +QN++ T + ++N L+ F SDL EY
Sbjct: 598 AVREPHPHLLEVKKIYQNIKSTLIDKKN------LTVRVKNWFDFSDLNEY 642
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,586,350
Number of Sequences: 62578
Number of extensions: 408985
Number of successful extensions: 742
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 12
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)