Query 047622
Match_columns 300
No_of_seqs 170 out of 988
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 23:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.3E-52 4.4E-57 366.4 15.4 152 4-164 11-170 (174)
2 1ut7_A No apical meristem prot 100.0 6.4E-52 2.2E-56 361.3 14.5 153 4-165 13-168 (171)
3 1ldd_A APC2WHB, anaphase promo 25.7 30 0.001 25.4 1.7 28 8-36 36-64 (74)
4 4dox_A Coat protein; all helix 17.8 68 0.0023 28.4 2.6 28 4-31 151-178 (226)
5 3cpr_A Dihydrodipicolinate syn 9.6 1.1E+02 0.0039 27.5 1.7 18 8-26 118-135 (304)
6 3fkr_A L-2-keto-3-deoxyarabona 9.2 1.5E+02 0.0052 26.7 2.4 27 8-36 110-139 (309)
7 1f6k_A N-acetylneuraminate lya 9.0 1.3E+02 0.0045 26.8 1.9 18 8-26 106-123 (293)
8 2ehh_A DHDPS, dihydrodipicolin 8.9 1.3E+02 0.0046 26.8 1.9 18 8-26 102-119 (294)
9 2ojp_A DHDPS, dihydrodipicolin 8.9 1.3E+02 0.0046 26.8 1.9 18 8-26 103-120 (292)
10 3dz1_A Dihydrodipicolinate syn 8.9 1.4E+02 0.0048 27.0 2.0 17 8-26 109-125 (313)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.3e-52 Score=366.36 Aligned_cols=152 Identities=35% Similarity=0.643 Sum_probs=126.6
Q ss_pred CCCCCCCCCeeCCChHHHHHHHHhhhhcCCCCCCccceeecccccCCCCccchhhhcCCCCCCCCCceEEEecCcccCCC
Q 047622 4 TRPPLPLGCKFQPSDELLVQFYLFNKISGTPAPFVDDLVRTENLYGFKEPWQIWRQFGGPDLEDGEDLYFFTPLKKKSVN 83 (300)
Q Consensus 4 ~~~~LPpGfRF~PTDeELV~~YL~~Ki~g~~lp~~~~I~d~DdvY~~~~PwdLp~~~~~~~~~~~~ewYFFs~r~~k~~~ 83 (300)
..+.|||||||+|||||||.|||++|+.|.+++.. .|.++| || ++|||+||+... .++.+|||||++++||++
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~-~I~evD-vy-~~~Pw~Lp~~~~----~g~~ewYFFs~r~~ky~~ 83 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVP-IIAEVD-LY-KFDPWDLPERAL----FGAREWYFFTPRDRKYPN 83 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSS-CCEECC-GG-GSCGGGSGGGCS----SCSSEEEEEEECCC----
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcC-eeeecc-cc-cCCchhhhhhhc----cCCceEEEEeccccccCC
Confidence 45689999999999999999999999999999864 588888 99 489999998643 456799999999999999
Q ss_pred CCccccccccceeeecCCCceEEeCCCCceeeeEEEEEeecCCCCC--CcCeEEEEEEeCCCCCCC------CCCCCCeE
Q 047622 84 GSRIDRRVGTGTWQGEDAGKAVVSRKSKKKIGSKKRFRYEKDKSPH--NGCWIMHEYSLNPSLLPQ------NLRSSDLV 155 (300)
Q Consensus 84 G~R~~R~~g~G~Wk~tG~~k~I~~~~~g~viG~KktL~Fy~g~~~~--kT~WvMhEY~l~~~~~~~------~~~~~~~V 155 (300)
|.|.+|++++||||++|++|+|.+ +|.+||+||+|+||.|+++. ||+|+||||+|....... .+..++||
T Consensus 84 g~R~nR~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wV 161 (174)
T 3ulx_A 84 GSRPNRAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWV 161 (174)
T ss_dssp -CCSCEEETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEE
T ss_pred CCCceeecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEE
Confidence 999999999999999999999985 47999999999999998764 899999999999864321 13468999
Q ss_pred EEEEEEcCC
Q 047622 156 LCRIRKNED 164 (300)
Q Consensus 156 LCrI~kk~~ 164 (300)
|||||+|.+
T Consensus 162 lCrvf~K~~ 170 (174)
T 3ulx_A 162 LCRLYNKKN 170 (174)
T ss_dssp EEEEEESCC
T ss_pred EEEEEEcCC
Confidence 999998764
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=6.4e-52 Score=361.33 Aligned_cols=153 Identities=33% Similarity=0.576 Sum_probs=123.6
Q ss_pred CCCCCCCCCeeCCChHHHHHHHHhhhhcCCCCCCccceeecccccCCCCccchhhhcCCCCCCCCCceEEEecCcccCCC
Q 047622 4 TRPPLPLGCKFQPSDELLVQFYLFNKISGTPAPFVDDLVRTENLYGFKEPWQIWRQFGGPDLEDGEDLYFFTPLKKKSVN 83 (300)
Q Consensus 4 ~~~~LPpGfRF~PTDeELV~~YL~~Ki~g~~lp~~~~I~d~DdvY~~~~PwdLp~~~~~~~~~~~~ewYFFs~r~~k~~~ 83 (300)
....|||||||+|||||||.|||++|+.|.+++.. .|.++| || .+|||+||+... .++.+|||||++++||++
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~-~I~e~D-iy-~~~Pw~Lp~~~~----~g~~ewyFFs~r~~k~~~ 85 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ-LIAEID-LY-KFDPWVLPNKAL----FGEKEWYFFSPRDRKYPN 85 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSC-CSEECC-GG-GSCGGGHHHHSS----SCSSEEEEEEECCC----
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCC-eEeecc-cc-cCChhHhhchhh----cCCccEEEEeccccccCC
Confidence 35689999999999999999999999999999864 588888 99 489999998742 457899999999999999
Q ss_pred CCccccccccceeeecCCCceEEeCCCCceeeeEEEEEeecCCCCC--CcCeEEEEEEeCCCCCC-CCCCCCCeEEEEEE
Q 047622 84 GSRIDRRVGTGTWQGEDAGKAVVSRKSKKKIGSKKRFRYEKDKSPH--NGCWIMHEYSLNPSLLP-QNLRSSDLVLCRIR 160 (300)
Q Consensus 84 G~R~~R~~g~G~Wk~tG~~k~I~~~~~g~viG~KktL~Fy~g~~~~--kT~WvMhEY~l~~~~~~-~~~~~~~~VLCrI~ 160 (300)
|.|.+|+|++||||++|++|+|.+ ++.+||+||+|+||.|+++. ||+|+||||+|...... .....++|||||||
T Consensus 86 g~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~ 163 (171)
T 1ut7_A 86 GSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 163 (171)
T ss_dssp ---CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEE
T ss_pred CCcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEE
Confidence 999999999999999999999996 46999999999999998764 89999999999876421 12346899999999
Q ss_pred EcCCC
Q 047622 161 KNEDI 165 (300)
Q Consensus 161 kk~~~ 165 (300)
+|...
T Consensus 164 ~k~~~ 168 (171)
T 1ut7_A 164 KKQSS 168 (171)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 98753
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=25.72 E-value=30 Score=25.37 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=22.8
Q ss_pred CCCCCeeCC-ChHHHHHHHHhhhhcCCCCC
Q 047622 8 LPLGCKFQP-SDELLVQFYLFNKISGTPAP 36 (300)
Q Consensus 8 LPpGfRF~P-TDeELV~~YL~~Ki~g~~lp 36 (300)
.|.|+.|.. |++||-. ||..|+....+.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 367899998 9999977 999999876553
No 4
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=17.82 E-value=68 Score=28.42 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=19.0
Q ss_pred CCCCCCCCCeeCCChHHHHHHHHhhhhc
Q 047622 4 TRPPLPLGCKFQPSDELLVQFYLFNKIS 31 (300)
Q Consensus 4 ~~~~LPpGfRF~PTDeELV~~YL~~Ki~ 31 (300)
.++.-+-|..+.||++|+|.|=..+++.
T Consensus 151 AAl~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 151 AAMQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp TSCCCTTCCSSCCCHHHHHHHHTC----
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3444556999999999999986666554
No 5
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=9.58 E-value=1.1e+02 Score=27.52 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.5
Q ss_pred CCCCCeeCCChHHHHHHHH
Q 047622 8 LPLGCKFQPSDELLVQFYL 26 (300)
Q Consensus 8 LPpGfRF~PTDeELV~~YL 26 (300)
+|| |.|.||+++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 568999999999774
No 6
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=9.24 E-value=1.5e+02 Score=26.74 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=17.9
Q ss_pred CCCCCe---eCCChHHHHHHHHhhhhcCCCCC
Q 047622 8 LPLGCK---FQPSDELLVQFYLFNKISGTPAP 36 (300)
Q Consensus 8 LPpGfR---F~PTDeELV~~YL~~Ki~g~~lp 36 (300)
+|| |. |.||+++|+.||-. -...-++|
T Consensus 110 ~~P-yy~~~~~~s~~~l~~~f~~-va~a~~lP 139 (309)
T 3fkr_A 110 MPP-YHGATFRVPEAQIFEFYAR-VSDAIAIP 139 (309)
T ss_dssp CCS-CBTTTBCCCHHHHHHHHHH-HHHHCSSC
T ss_pred cCC-CCccCCCCCHHHHHHHHHH-HHHhcCCC
Confidence 566 54 89999999997643 33333555
No 7
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=9.05 E-value=1.3e+02 Score=26.84 Aligned_cols=18 Identities=11% Similarity=0.096 Sum_probs=14.3
Q ss_pred CCCCCeeCCChHHHHHHHH
Q 047622 8 LPLGCKFQPSDELLVQFYL 26 (300)
Q Consensus 8 LPpGfRF~PTDeELV~~YL 26 (300)
+|| |.|.||+++|+.||-
T Consensus 106 ~~P-~y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTP-FYYKFSFPEIKHYYD 123 (293)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 456 558999999999764
No 8
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=8.90 E-value=1.3e+02 Score=26.79 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=14.3
Q ss_pred CCCCCeeCCChHHHHHHHH
Q 047622 8 LPLGCKFQPSDELLVQFYL 26 (300)
Q Consensus 8 LPpGfRF~PTDeELV~~YL 26 (300)
+|| |.|.||+++|+.||-
T Consensus 102 ~~P-~y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 102 VVP-YYNKPTQRGLYEHFK 119 (294)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 558999999999874
No 9
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=8.88 E-value=1.3e+02 Score=26.75 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.2
Q ss_pred CCCCCeeCCChHHHHHHHH
Q 047622 8 LPLGCKFQPSDELLVQFYL 26 (300)
Q Consensus 8 LPpGfRF~PTDeELV~~YL 26 (300)
+|| |.|.||+++|+.||-
T Consensus 103 ~~P-~y~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 103 VTP-YYNRPSQEGLYQHFK 120 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 456 558999999999773
No 10
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=8.87 E-value=1.4e+02 Score=26.97 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=13.0
Q ss_pred CCCCCeeCCChHHHHHHHH
Q 047622 8 LPLGCKFQPSDELLVQFYL 26 (300)
Q Consensus 8 LPpGfRF~PTDeELV~~YL 26 (300)
+|| | |.||+++|+.||-
T Consensus 109 ~~P-~-~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 109 APP-P-SLRTDEQITTYFR 125 (313)
T ss_dssp CCC-T-TCCSHHHHHHHHH
T ss_pred CCC-C-CCCCHHHHHHHHH
Confidence 566 4 5699999999764
Done!