BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047623
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
Length = 260
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 118/199 (59%), Gaps = 14/199 (7%)
Query: 106 YTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEG 165
Y V V+ GD L+QAL++DKR N +L S+ R K L G A V++ LK+
Sbjct: 58 YDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVA--KVLDDLKAM--- 112
Query: 166 SPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLEC------DGIR 219
+FI+ D PAGI+ G + A+ A+EA++ T P+++S+RD+DR+ G+L +G
Sbjct: 113 DFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEE 172
Query: 220 DIK--MVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP 277
IK +++ R + DM+S+ D+ E+L + L+GVIPED V+R++N+G P++L+
Sbjct: 173 PIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDIN 232
Query: 278 PTLAGLAFEQAAWRLVEQD 296
AG A+ RL+ ++
Sbjct: 233 AD-AGKAYADTVERLLGEE 250
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 26/204 (12%)
Query: 105 NYTVVEVLNGDCRLDQALVRDKRWS--------NFELLCISKPRSKLPLGFGGKALTWVV 156
N T+ +VL GD +L+ A+ + + ++E + + PR KLP V+
Sbjct: 56 NITLHDVLAGDAKLEDAIYXTQFENVYILPGAVDWEHVIKADPR-KLP---------EVI 105
Query: 157 EALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECD 216
++LK G DFILIDCPAG+ +A EA+LVT P+I+ L D +V +L+
Sbjct: 106 KSLK----GKYDFILIDCPAGLQLRAXSAXLSGEEAILVTNPEISCLTDTXKVGXVLKKA 161
Query: 217 GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNK 276
G+ + ++NR + E + Q++ + LL VIPED + T G P V K
Sbjct: 162 GLAILGFILNRYG----RSERDIPPEAAQDVXDVPLLAVIPEDPVIREGTLEGIPAVKYK 217
Query: 277 PPTLAGLAFEQAAWRLVEQDSMKA 300
P + AF + A + + +KA
Sbjct: 218 PESKGAQAFIKLAEEVDKLAGIKA 241
>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus
Length = 263
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 4/149 (2%)
Query: 166 SPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVV 225
S D +L+D PAG++ + AI A E +LV P+I+S+ D + + E G + + +VV
Sbjct: 110 STDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVV 169
Query: 226 NRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF 285
NR+ T I+ M+ +I+ +L ++G+IPED EV R+ G P+VL P + A A
Sbjct: 170 NRITTLGIE----MAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARAI 225
Query: 286 EQAAWRLVEQDSMKAVMVEEEPKRRGFFS 314
+ A + K +E K+ G +
Sbjct: 226 VELANYIAGGAKKKVPAEVKEKKKEGALA 254
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 18/148 (12%)
Query: 150 KALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRV 209
+ L V+++LK + DFILIDCPAG+ ++A+ EA+LVT P+I+ L D +V
Sbjct: 99 RKLPEVIKSLKDKF----DFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKV 154
Query: 210 TGLLECDGIRDIKMVVNRV-RTDMI----KGEDMMSVLDIQEMLGLALLGVIPEDSEVIR 264
+L+ G+ + V+NR R+D ED+M V LL VIPED +
Sbjct: 155 GIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEV---------PLLAVIPEDPAIRE 205
Query: 265 STNRGYPLVLNKPPTLAGLAFEQAAWRL 292
T G P V KP + AF + A +
Sbjct: 206 GTLEGIPAVKYKPESKGAKAFVKLAEEI 233
>pdb|3EA0|A Chain A, Crystal Structure Of Para Family Atpase From Chlorobium
Tepidum Tls
pdb|3EA0|B Chain B, Crystal Structure Of Para Family Atpase From Chlorobium
Tepidum Tls
Length = 245
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 168 DFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLE--CDGIRDIKMVV 225
D+I++D A ID + + +E +VTTP + SLR A ++ L + I I++++
Sbjct: 120 DYIIVDFGASIDHVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIIL 179
Query: 226 NRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRST 266
NR T+ D +I++++G + IP+D + + +
Sbjct: 180 NRADTNSRITSD-----EIEKVIGRPISKRIPQDEDAXQES 215
>pdb|3KJE|A Chain A, Empty State Of Cooc1
pdb|3KJG|A Chain A, Adp-Bound State Of Cooc1
pdb|3KJG|B Chain B, Adp-Bound State Of Cooc1
pdb|3KJH|A Chain A, Zn-Bound State Of Cooc1
pdb|3KJI|A Chain A, Zn And Adp Bound State Of Cooc1
pdb|3KJI|B Chain B, Zn And Adp Bound State Of Cooc1
Length = 254
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 170 ILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVR 229
+++D AGI+ + + V P++ S++ + L GI+ ++ V+N+VR
Sbjct: 135 VVMDMGAGIEHLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194
Query: 230 TDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGL 283
IK E ++ + + +LG+IP + I + +G + + P L
Sbjct: 195 N--IKEEKLIK----KHLPEDKILGIIPYNELFIELSLKGEEIWQSTNPAFVNL 242
>pdb|3C2G|A Chain A, Crystal Complex Of Sys-1POP-1 At 2.5a Resolution
pdb|3C2G|B Chain B, Crystal Complex Of Sys-1POP-1 At 2.5a Resolution
Length = 619
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 203 LRDADRVTGLLECDGIRDIKMVVNRVRTDMIKG--EDMMSVLDIQEMLGLALLGVIP--- 257
L D+D + G + DG+ I VV D+I+ + ++ V D + + L ++P
Sbjct: 271 LHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPLENILPFLL 330
Query: 258 ------EDSEVIRS 265
D EVI S
Sbjct: 331 RLIEIHPDDEVIYS 344
>pdb|3CO8|A Chain A, Crystal Structure Of Alanine Racemase From Oenococcus Oeni
pdb|3CO8|B Chain B, Crystal Structure Of Alanine Racemase From Oenococcus Oeni
Length = 380
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 146 GFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRD 205
G G A++ + E + RQ G DFILI P ID + A + L T + L+
Sbjct: 59 GVDGLAVSVLDEGIAIRQAGIDDFILILGP--IDVKY--APIASKYHFLTTVSSLDWLKS 114
Query: 206 ADRVTG 211
AD++ G
Sbjct: 115 ADKILG 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,409,766
Number of Sequences: 62578
Number of extensions: 307013
Number of successful extensions: 676
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 22
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)