Query 047623
Match_columns 340
No_of_seqs 174 out of 2053
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 13:01:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2894 MinD Septum formation 100.0 1.2E-42 2.5E-47 288.5 17.1 263 49-320 1-270 (272)
2 CHL00175 minD septum-site dete 100.0 1.5E-38 3.2E-43 288.7 28.7 266 46-319 11-276 (281)
3 TIGR01969 minD_arch cell divis 100.0 7.6E-38 1.6E-42 279.5 26.8 251 51-318 1-251 (251)
4 TIGR01968 minD_bact septum sit 100.0 2.6E-37 5.6E-42 277.5 27.4 260 50-319 1-260 (261)
5 PRK10818 cell division inhibit 100.0 3.5E-35 7.7E-40 265.1 27.0 242 49-296 1-250 (270)
6 COG0455 flhG Antiactivator of 100.0 1.4E-33 3.1E-38 249.6 25.1 241 49-298 1-244 (262)
7 TIGR03371 cellulose_yhjQ cellu 100.0 5.1E-34 1.1E-38 254.0 21.6 239 50-296 1-245 (246)
8 PRK13232 nifH nitrogenase redu 100.0 4.9E-33 1.1E-37 251.3 23.8 255 50-317 1-266 (273)
9 CHL00072 chlL photochlorophyll 100.0 2.3E-32 4.9E-37 247.8 25.9 248 53-319 3-267 (290)
10 PRK13233 nifH nitrogenase redu 100.0 1.5E-32 3.2E-37 248.6 22.7 236 49-298 1-253 (275)
11 TIGR01281 DPOR_bchL light-inde 100.0 1.6E-32 3.4E-37 247.6 22.8 250 52-319 2-267 (268)
12 PRK13235 nifH nitrogenase redu 100.0 2.8E-32 6E-37 246.6 24.2 257 50-318 1-269 (274)
13 PRK13236 nitrogenase reductase 100.0 2.4E-32 5.3E-37 248.8 22.9 260 46-319 2-274 (296)
14 PRK13231 nitrogenase reductase 100.0 1.3E-32 2.9E-37 247.4 20.5 254 50-316 2-262 (264)
15 TIGR01287 nifH nitrogenase iro 100.0 3.8E-32 8.2E-37 245.9 23.1 258 51-318 1-270 (275)
16 PRK10037 cell division protein 100.0 2E-32 4.4E-37 244.2 20.2 232 50-298 1-241 (250)
17 PRK13185 chlL protochlorophyll 100.0 4.7E-32 1E-36 244.7 22.3 251 49-317 1-267 (270)
18 cd02040 NifH NifH gene encodes 100.0 7.8E-32 1.7E-36 243.3 23.7 240 50-299 1-252 (270)
19 PRK11670 antiporter inner memb 100.0 1.8E-31 3.8E-36 249.0 26.6 243 46-296 103-353 (369)
20 cd02032 Bchl_like This family 100.0 4.2E-32 9E-37 244.6 21.6 249 52-318 2-266 (267)
21 PRK13230 nitrogenase reductase 100.0 6.7E-32 1.5E-36 244.7 22.8 258 50-318 1-271 (279)
22 PF06564 YhjQ: YhjQ protein; 100.0 5.5E-32 1.2E-36 235.0 20.6 236 50-296 1-239 (243)
23 PRK13234 nifH nitrogenase redu 100.0 6.3E-32 1.4E-36 246.0 21.5 259 49-320 3-274 (295)
24 KOG3022 Predicted ATPase, nucl 100.0 3.7E-31 8.1E-36 227.7 23.2 248 44-298 41-297 (300)
25 TIGR03815 CpaE_hom_Actino heli 100.0 9.8E-31 2.1E-35 241.7 27.3 231 46-291 89-321 (322)
26 PRK13869 plasmid-partitioning 100.0 4.3E-31 9.4E-36 249.6 19.1 236 48-288 119-383 (405)
27 COG1192 Soj ATPases involved i 100.0 1.4E-30 3.1E-35 233.6 19.6 245 49-297 1-255 (259)
28 TIGR03453 partition_RepA plasm 100.0 3.7E-30 8.1E-35 243.2 20.4 238 47-289 101-367 (387)
29 PHA02519 plasmid partition pro 100.0 6.2E-30 1.3E-34 239.8 21.1 230 47-279 103-355 (387)
30 PRK13705 plasmid-partitioning 100.0 6.1E-30 1.3E-34 240.4 20.9 230 46-279 102-355 (388)
31 cd02036 MinD Bacterial cell di 100.0 9.1E-30 2E-34 215.6 19.8 179 52-285 1-179 (179)
32 PHA02518 ParA-like protein; Pr 100.0 1.2E-29 2.7E-34 220.5 20.5 203 51-296 1-209 (211)
33 cd02117 NifH_like This family 100.0 7.1E-28 1.5E-32 209.7 19.6 199 51-259 1-212 (212)
34 TIGR03018 pepcterm_TyrKin exop 100.0 1.2E-27 2.6E-32 207.4 18.4 194 24-226 5-207 (207)
35 TIGR03029 EpsG chain length de 100.0 1.6E-27 3.4E-32 215.6 19.8 200 21-227 74-274 (274)
36 TIGR02016 BchX chlorophyllide 100.0 2.3E-26 5E-31 209.1 24.4 234 51-297 1-253 (296)
37 TIGR01007 eps_fam capsular exo 100.0 3.8E-27 8.2E-32 204.0 18.3 179 48-232 15-194 (204)
38 cd02033 BchX Chlorophyllide re 100.0 6.2E-26 1.3E-30 207.1 25.9 251 46-318 27-294 (329)
39 COG4963 CpaE Flp pilus assembl 99.9 3.3E-26 7.2E-31 207.0 21.5 241 44-296 98-345 (366)
40 PRK11519 tyrosine kinase; Prov 99.9 1.6E-26 3.4E-31 233.8 21.0 220 5-231 462-701 (719)
41 TIGR01005 eps_transp_fam exopo 99.9 7.5E-27 1.6E-31 238.6 18.2 200 26-232 522-722 (754)
42 PRK09841 cryptic autophosphory 99.9 4.3E-26 9.4E-31 230.9 20.7 221 5-232 462-707 (726)
43 cd02037 MRP-like MRP (Multiple 99.9 8.6E-26 1.9E-30 189.6 18.8 161 52-260 1-169 (169)
44 COG3640 CooC CO dehydrogenase 99.9 1.7E-25 3.7E-30 189.0 20.0 230 52-295 2-253 (255)
45 COG0489 Mrp ATPases involved i 99.9 3.8E-25 8.2E-30 197.5 21.9 231 25-264 30-263 (265)
46 PF00142 Fer4_NifH: 4Fe-4S iro 99.9 1E-24 2.2E-29 188.9 21.3 254 51-318 1-268 (273)
47 PRK13849 putative crown gall t 99.9 1E-24 2.2E-29 191.2 21.3 191 50-277 1-197 (231)
48 cd03110 Fer4_NifH_child This p 99.9 1.8E-24 3.9E-29 183.3 17.7 176 52-257 1-179 (179)
49 COG1149 MinD superfamily P-loo 99.9 5.5E-24 1.2E-28 183.7 20.3 235 50-294 1-282 (284)
50 COG1348 NifH Nitrogenase subun 99.9 1.9E-23 4.1E-28 175.6 20.3 239 50-299 1-253 (278)
51 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 1.6E-24 3.5E-29 185.8 13.9 191 53-264 1-195 (195)
52 cd02038 FleN-like FleN is a me 99.9 1.3E-21 2.7E-26 158.8 14.4 135 52-257 1-139 (139)
53 cd03111 CpaE_like This protein 99.9 5.3E-21 1.2E-25 147.6 14.2 102 52-227 1-106 (106)
54 PF13614 AAA_31: AAA domain; P 99.8 1.2E-20 2.7E-25 156.2 10.3 146 51-204 1-156 (157)
55 PF07015 VirC1: VirC1 protein; 99.8 2.7E-19 5.8E-24 153.4 16.9 184 50-270 1-190 (231)
56 cd02042 ParA ParA and ParB of 99.8 2.8E-19 6.1E-24 137.7 13.6 99 52-226 1-104 (104)
57 cd00550 ArsA_ATPase Oxyanion-t 99.8 1.7E-19 3.6E-24 161.0 12.9 175 53-232 2-203 (254)
58 PF09140 MipZ: ATPase MipZ; I 99.8 1.1E-19 2.5E-24 156.1 9.4 223 51-291 1-256 (261)
59 cd02035 ArsA ArsA ATPase funct 99.8 2.2E-19 4.8E-24 156.6 11.4 166 53-232 1-184 (217)
60 PF02374 ArsA_ATPase: Anion-tr 99.7 4.8E-15 1E-19 135.3 16.9 179 51-234 2-252 (305)
61 cd03114 ArgK-like The function 99.6 6.7E-14 1.4E-18 114.4 15.7 145 53-229 2-148 (148)
62 TIGR00064 ftsY signal recognit 99.5 4.4E-12 9.5E-17 114.0 18.7 166 47-253 69-248 (272)
63 COG0003 ArsA Predicted ATPase 99.5 6.6E-13 1.4E-17 121.0 12.3 48 52-100 3-50 (322)
64 PRK00090 bioD dithiobiotin syn 99.5 6E-13 1.3E-17 116.6 11.7 191 53-259 2-202 (222)
65 PRK13886 conjugal transfer pro 99.4 6.8E-12 1.5E-16 109.5 17.0 50 49-98 1-50 (241)
66 cd02034 CooC The accessory pro 99.4 8E-13 1.7E-17 103.3 9.4 110 56-195 4-115 (116)
67 cd01983 Fer4_NifH The Fer4_Nif 99.4 1.2E-11 2.5E-16 93.2 11.7 92 53-226 2-99 (99)
68 cd03115 SRP The signal recogni 99.4 5.1E-11 1.1E-15 100.2 16.8 160 55-254 4-171 (173)
69 PRK13768 GTPase; Provisional 99.3 2.9E-11 6.4E-16 107.8 14.6 161 49-231 1-175 (253)
70 PRK12374 putative dithiobiotin 99.3 3.8E-11 8.2E-16 105.8 14.7 195 49-261 1-205 (231)
71 PRK10867 signal recognition pa 99.3 9.5E-11 2.1E-15 111.2 18.1 164 48-253 98-271 (433)
72 PRK10416 signal recognition pa 99.3 2.1E-10 4.5E-15 105.3 19.4 165 48-253 112-290 (318)
73 TIGR00959 ffh signal recogniti 99.3 1.2E-10 2.6E-15 110.5 17.4 162 51-253 99-270 (428)
74 KOG2825 Putative arsenite-tran 99.3 3.5E-11 7.7E-16 103.0 12.1 178 50-231 18-266 (323)
75 COG0132 BioD Dethiobiotin synt 99.3 3.6E-11 7.7E-16 103.6 12.3 198 49-262 1-207 (223)
76 TIGR00347 bioD dethiobiotin sy 99.3 9.6E-11 2.1E-15 97.8 13.6 157 55-226 2-166 (166)
77 PRK00771 signal recognition pa 99.2 3.6E-10 7.8E-15 107.5 17.6 183 48-274 93-295 (437)
78 PRK01077 cobyrinic acid a,c-di 99.2 2.3E-10 4.9E-15 110.4 15.9 170 50-263 3-185 (451)
79 TIGR01425 SRP54_euk signal rec 99.2 7.5E-10 1.6E-14 104.6 18.6 165 48-253 98-270 (429)
80 TIGR00313 cobQ cobyric acid sy 99.2 9.9E-10 2.1E-14 106.4 17.4 202 53-261 1-226 (475)
81 PF13500 AAA_26: AAA domain; P 99.2 3.4E-10 7.4E-15 97.4 12.2 185 51-263 1-196 (199)
82 PRK12726 flagellar biosynthesi 99.2 3.1E-09 6.7E-14 98.1 18.0 162 48-253 204-373 (407)
83 PRK11889 flhF flagellar biosyn 99.1 5.2E-09 1.1E-13 97.0 18.0 168 49-261 240-421 (436)
84 cd03109 DTBS Dethiobiotin synt 99.1 3.7E-09 8E-14 85.0 14.8 121 58-257 7-134 (134)
85 TIGR00750 lao LAO/AO transport 99.1 7.3E-09 1.6E-13 94.8 17.4 155 46-231 30-185 (300)
86 PRK05703 flhF flagellar biosyn 99.1 5.6E-09 1.2E-13 99.6 16.7 157 50-253 221-388 (424)
87 PRK12727 flagellar biosynthesi 99.1 8E-09 1.7E-13 99.2 17.5 157 48-253 348-515 (559)
88 COG1797 CobB Cobyrinic acid a, 99.0 1.8E-09 4E-14 100.0 11.5 176 52-270 2-191 (451)
89 PRK00784 cobyric acid synthase 99.0 1.2E-08 2.5E-13 99.6 17.8 204 49-262 1-230 (488)
90 PRK14493 putative bifunctional 99.0 2E-09 4.4E-14 96.6 11.4 202 50-298 1-209 (274)
91 COG1703 ArgK Putative periplas 99.0 9E-09 2E-13 91.0 13.3 153 47-232 48-203 (323)
92 PRK05632 phosphate acetyltrans 99.0 3.1E-09 6.7E-14 107.6 11.9 172 49-263 1-200 (684)
93 COG0541 Ffh Signal recognition 99.0 2.2E-08 4.9E-13 92.9 15.9 164 47-253 97-270 (451)
94 PRK09435 membrane ATPase/prote 99.0 4.2E-08 9.2E-13 90.2 17.5 152 47-231 53-207 (332)
95 TIGR00379 cobB cobyrinic acid 98.9 2.5E-08 5.5E-13 96.2 15.8 169 53-263 2-182 (449)
96 PRK14974 cell division protein 98.9 2.9E-08 6.3E-13 91.5 15.5 164 49-253 139-310 (336)
97 PRK13505 formate--tetrahydrofo 98.9 6.7E-08 1.5E-12 92.6 17.0 94 202-298 357-462 (557)
98 TIGR00345 arsA arsenite-activa 98.9 1.2E-08 2.5E-13 92.7 10.4 42 190-231 190-231 (284)
99 PF00448 SRP54: SRP54-type pro 98.9 1.4E-07 3.1E-12 80.7 15.8 163 50-253 1-171 (196)
100 PRK12724 flagellar biosynthesi 98.8 1.8E-07 3.8E-12 88.0 15.7 165 50-262 223-404 (432)
101 PRK13896 cobyrinic acid a,c-di 98.8 8E-08 1.7E-12 91.4 11.9 176 50-270 1-187 (433)
102 PRK12723 flagellar biosynthesi 98.8 6.4E-07 1.4E-11 84.2 17.7 158 49-253 173-343 (388)
103 PRK06278 cobyrinic acid a,c-di 98.7 5.4E-07 1.2E-11 86.7 16.1 166 48-258 236-418 (476)
104 TIGR03499 FlhF flagellar biosy 98.7 8.5E-08 1.8E-12 86.9 9.4 43 48-91 192-236 (282)
105 PF03308 ArgK: ArgK protein; 98.7 5.6E-08 1.2E-12 85.0 6.9 151 48-231 27-180 (266)
106 PRK14723 flhF flagellar biosyn 98.6 1.9E-06 4.2E-11 86.7 17.9 160 49-253 184-354 (767)
107 PRK06731 flhF flagellar biosyn 98.6 4.4E-06 9.6E-11 74.8 17.9 169 49-261 74-255 (270)
108 KOG0780 Signal recognition par 98.5 1.5E-06 3.2E-11 79.4 12.0 153 46-237 97-259 (483)
109 PRK14722 flhF flagellar biosyn 98.5 9.5E-06 2.1E-10 75.8 16.3 161 48-253 135-312 (374)
110 COG0552 FtsY Signal recognitio 98.4 9.8E-06 2.1E-10 73.3 15.3 163 48-253 137-315 (340)
111 PRK06995 flhF flagellar biosyn 98.4 1E-05 2.2E-10 78.0 16.0 158 49-253 255-422 (484)
112 PF10609 ParA: ParA/MinD ATPas 98.3 1.8E-06 3.9E-11 61.9 6.7 62 168-229 2-65 (81)
113 KOG0781 Signal recognition par 98.2 1.2E-05 2.5E-10 75.5 11.3 153 47-230 375-542 (587)
114 COG1419 FlhF Flagellar GTP-bin 98.2 2.5E-05 5.4E-10 72.7 12.9 157 50-253 203-369 (407)
115 COG1492 CobQ Cobyric acid synt 98.2 1.1E-05 2.3E-10 76.7 9.3 207 51-263 2-231 (486)
116 PLN02974 adenosylmethionine-8- 98.0 6.8E-05 1.5E-09 77.1 11.5 87 166-260 184-281 (817)
117 KOG1532 GTPase XAB1, interacts 97.9 5.6E-05 1.2E-09 66.3 8.3 111 48-178 17-127 (366)
118 PF03029 ATP_bind_1: Conserved 97.9 1.3E-05 2.7E-10 70.8 4.2 103 58-181 3-105 (238)
119 COG1341 Predicted GTPase or GT 97.8 0.00021 4.6E-09 66.4 11.1 46 48-94 71-116 (398)
120 KOG1533 Predicted GTPase [Gene 97.7 7.9E-05 1.7E-09 64.0 5.6 101 58-179 9-109 (290)
121 cd00477 FTHFS Formyltetrahydro 97.7 8.9E-05 1.9E-09 70.7 6.4 54 47-103 35-91 (524)
122 cd04169 RF3 RF3 subfamily. Pe 97.6 0.00089 1.9E-08 60.2 12.1 89 166-257 70-161 (267)
123 cd01884 EF_Tu EF-Tu subfamily. 97.6 0.0009 2E-08 57.3 11.4 65 166-230 64-130 (195)
124 cd01886 EF-G Elongation factor 97.6 0.00081 1.8E-08 60.6 11.1 90 166-258 63-155 (270)
125 PRK13506 formate--tetrahydrofo 97.6 0.00014 3E-09 70.1 6.3 54 47-103 51-107 (578)
126 TIGR00176 mobB molybdopterin-g 97.6 0.00023 4.9E-09 58.6 6.7 38 52-90 1-38 (155)
127 PRK14721 flhF flagellar biosyn 97.5 0.01 2.2E-07 56.7 18.4 159 48-253 189-357 (420)
128 COG1763 MobB Molybdopterin-gua 97.5 0.00055 1.2E-08 56.3 8.1 41 49-90 1-41 (161)
129 PRK14495 putative molybdopteri 97.5 0.00043 9.3E-09 65.5 7.9 40 50-90 1-40 (452)
130 PRK08233 hypothetical protein; 97.4 0.0011 2.5E-08 55.6 9.7 38 50-90 3-40 (182)
131 PRK09361 radB DNA repair and r 97.4 0.00062 1.4E-08 59.6 8.3 40 48-88 21-60 (225)
132 PHA02542 41 41 helicase; Provi 97.4 0.0002 4.3E-09 69.4 5.2 45 51-95 190-234 (473)
133 cd04167 Snu114p Snu114p subfam 97.3 0.0012 2.6E-08 57.2 8.5 64 166-230 70-135 (213)
134 PRK12740 elongation factor G; 97.3 0.0018 3.8E-08 66.1 11.0 90 166-258 59-151 (668)
135 PRK06067 flagellar accessory p 97.3 0.0018 4E-08 57.0 9.6 42 48-90 23-64 (234)
136 PRK00089 era GTPase Era; Revie 97.3 0.0067 1.5E-07 55.3 13.4 65 166-231 52-126 (292)
137 PF03205 MobB: Molybdopterin g 97.2 0.00084 1.8E-08 54.2 6.2 38 51-89 1-39 (140)
138 cd00881 GTP_translation_factor 97.2 0.0036 7.9E-08 52.5 10.2 65 166-231 61-127 (189)
139 COG1159 Era GTPase [General fu 97.1 0.0052 1.1E-07 55.0 10.8 113 50-232 6-128 (298)
140 PRK04296 thymidine kinase; Pro 97.1 0.012 2.5E-07 50.2 12.4 36 50-86 2-37 (190)
141 cd04163 Era Era subfamily. Er 97.1 0.011 2.4E-07 48.0 12.0 65 166-231 50-124 (168)
142 PRK00741 prfC peptide chain re 97.1 0.0076 1.7E-07 59.4 12.6 85 166-253 78-164 (526)
143 cd01124 KaiC KaiC is a circadi 97.1 0.0026 5.7E-08 53.6 8.3 37 54-90 2-38 (187)
144 COG2403 Predicted GTPase [Gene 97.1 0.0042 9.1E-08 57.0 9.7 40 48-87 124-163 (449)
145 PRK14494 putative molybdopteri 97.1 0.0012 2.5E-08 57.8 5.9 38 50-88 1-38 (229)
146 TIGR00503 prfC peptide chain r 97.1 0.008 1.7E-07 59.3 12.4 89 166-257 79-170 (527)
147 PRK00889 adenylylsulfate kinas 97.0 0.0014 3.1E-08 54.9 6.1 42 48-90 2-43 (175)
148 PRK08533 flagellar accessory p 97.0 0.013 2.8E-07 51.6 12.3 40 50-90 24-63 (230)
149 cd03116 MobB Molybdenum is an 97.0 0.0016 3.4E-08 53.8 6.0 40 50-90 1-40 (159)
150 PLN03127 Elongation factor Tu; 97.0 0.018 3.9E-07 55.7 14.1 66 166-231 123-190 (447)
151 TIGR02012 tigrfam_recA protein 97.0 0.0052 1.1E-07 56.5 9.8 42 48-90 53-94 (321)
152 PF01583 APS_kinase: Adenylyls 97.0 0.0014 3.1E-08 53.6 5.4 39 51-90 3-41 (156)
153 cd04165 GTPBP1_like GTPBP1-lik 97.0 0.012 2.7E-07 51.4 11.7 82 166-249 83-168 (224)
154 cd01125 repA Hexameric Replica 97.0 0.004 8.7E-08 55.0 8.7 39 52-90 2-52 (239)
155 cd00983 recA RecA is a bacter 97.0 0.006 1.3E-07 56.2 9.9 42 48-90 53-94 (325)
156 COG0529 CysC Adenylylsulfate k 96.9 0.0011 2.5E-08 54.7 4.3 56 46-102 19-74 (197)
157 cd01894 EngA1 EngA1 subfamily. 96.9 0.0075 1.6E-07 48.8 9.3 65 166-231 44-118 (157)
158 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.0038 8.3E-08 51.3 7.3 34 53-87 5-38 (159)
159 TIGR00490 aEF-2 translation el 96.9 0.0071 1.5E-07 62.1 10.7 65 166-231 85-151 (720)
160 cd01394 radB RadB. The archaea 96.8 0.0026 5.6E-08 55.3 6.1 41 49-90 18-58 (218)
161 COG1066 Sms Predicted ATP-depe 96.8 0.006 1.3E-07 57.0 8.5 39 51-90 93-131 (456)
162 PRK07667 uridine kinase; Provi 96.8 0.0031 6.7E-08 53.8 6.4 39 51-90 18-56 (193)
163 PF06745 KaiC: KaiC; InterPro 96.8 0.0055 1.2E-07 53.6 8.0 40 50-90 19-59 (226)
164 PF02606 LpxK: Tetraacyldisacc 96.8 0.013 2.9E-07 54.1 10.8 44 47-90 32-76 (326)
165 PTZ00141 elongation factor 1- 96.8 0.008 1.7E-07 58.2 9.7 65 166-230 84-157 (446)
166 COG0857 Pta BioD-like N-termin 96.8 0.023 5E-07 52.9 12.3 192 49-262 1-206 (354)
167 cd04170 EF-G_bact Elongation f 96.7 0.007 1.5E-07 54.4 8.4 92 166-260 63-157 (268)
168 PRK03846 adenylylsulfate kinas 96.7 0.0037 8.1E-08 53.6 5.9 42 48-90 22-63 (198)
169 PF00154 RecA: recA bacterial 96.7 0.067 1.5E-06 49.2 14.3 42 48-90 51-92 (322)
170 COG0468 RecA RecA/RadA recombi 96.7 0.049 1.1E-06 49.0 13.1 42 48-90 58-99 (279)
171 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.014 3E-07 51.1 9.5 42 48-90 18-59 (229)
172 TIGR01618 phage_P_loop phage n 96.6 0.0097 2.1E-07 51.7 8.2 32 51-90 13-44 (220)
173 PRK12739 elongation factor G; 96.6 0.024 5.2E-07 58.1 12.3 89 166-257 72-163 (691)
174 PRK00093 GTP-binding protein D 96.6 0.022 4.7E-07 55.1 11.4 65 166-231 48-122 (435)
175 COG2874 FlaH Predicted ATPases 96.6 0.016 3.5E-07 49.5 9.0 108 48-176 26-133 (235)
176 TIGR00436 era GTP-binding prot 96.6 0.022 4.9E-07 51.3 10.8 64 166-231 47-120 (270)
177 CHL00071 tufA elongation facto 96.6 0.025 5.3E-07 54.2 11.3 66 166-231 74-141 (409)
178 PRK06696 uridine kinase; Valid 96.6 0.0048 1E-07 53.9 6.0 43 48-91 20-62 (223)
179 cd04171 SelB SelB subfamily. 96.6 0.013 2.8E-07 47.8 8.2 65 167-231 51-117 (164)
180 PF07755 DUF1611: Protein of u 96.6 0.04 8.6E-07 50.0 11.8 164 48-256 110-293 (301)
181 cd03113 CTGs CTP synthetase (C 96.6 0.065 1.4E-06 46.9 12.6 89 165-258 131-237 (255)
182 PRK15494 era GTPase Era; Provi 96.6 0.019 4E-07 53.6 10.1 64 166-231 99-173 (339)
183 PRK00049 elongation factor Tu; 96.6 0.021 4.6E-07 54.4 10.6 66 166-231 74-141 (396)
184 TIGR02655 circ_KaiC circadian 96.6 0.013 2.8E-07 57.5 9.3 40 51-90 263-302 (484)
185 PRK09354 recA recombinase A; P 96.5 0.019 4.2E-07 53.3 9.9 42 48-90 58-99 (349)
186 PRK11823 DNA repair protein Ra 96.5 0.011 2.4E-07 57.2 8.6 39 52-90 81-119 (446)
187 PRK00007 elongation factor G; 96.5 0.035 7.5E-07 56.9 12.6 90 166-258 74-166 (693)
188 cd01121 Sms Sms (bacterial rad 96.5 0.012 2.5E-07 55.6 8.3 39 52-90 83-121 (372)
189 PRK05973 replicative DNA helic 96.5 0.0047 1E-07 54.3 5.3 40 51-90 64-103 (237)
190 PRK15453 phosphoribulokinase; 96.5 0.0057 1.2E-07 54.9 5.8 44 48-92 3-46 (290)
191 TIGR02237 recomb_radB DNA repa 96.5 0.0067 1.5E-07 52.3 6.3 41 48-89 10-50 (209)
192 KOG1534 Putative transcription 96.5 0.0034 7.5E-08 53.3 4.1 39 53-92 6-44 (273)
193 cd03112 CobW_like The function 96.4 0.074 1.6E-06 43.8 11.9 34 54-89 3-36 (158)
194 PF13479 AAA_24: AAA domain 96.4 0.018 3.9E-07 49.9 8.6 30 52-90 5-34 (213)
195 TIGR00416 sms DNA repair prote 96.4 0.01 2.2E-07 57.5 7.7 40 51-90 94-133 (454)
196 PRK07952 DNA replication prote 96.4 0.0047 1E-07 54.7 4.9 35 53-87 101-135 (244)
197 COG1160 Predicted GTPases [Gen 96.4 0.06 1.3E-06 51.1 12.4 65 166-231 50-125 (444)
198 PLN00043 elongation factor 1-a 96.4 0.025 5.3E-07 54.8 10.1 66 166-231 84-158 (447)
199 PRK12736 elongation factor Tu; 96.4 0.026 5.6E-07 53.8 10.1 66 166-231 74-141 (394)
200 PRK10751 molybdopterin-guanine 96.4 0.011 2.5E-07 49.3 6.7 42 48-90 4-45 (173)
201 PLN03126 Elongation factor Tu; 96.4 0.054 1.2E-06 52.8 12.4 66 166-231 143-210 (478)
202 cd01393 recA_like RecA is a b 96.4 0.015 3.3E-07 50.6 7.9 42 48-90 17-64 (226)
203 cd02028 UMPK_like Uridine mono 96.4 0.0056 1.2E-07 51.6 4.9 38 53-91 2-39 (179)
204 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.031 6.6E-07 49.3 9.8 41 49-90 20-60 (237)
205 PRK05595 replicative DNA helic 96.4 0.0043 9.3E-08 60.1 4.7 40 51-90 201-241 (444)
206 cd02029 PRK_like Phosphoribulo 96.3 0.0061 1.3E-07 54.3 5.1 40 52-92 1-40 (277)
207 PRK04328 hypothetical protein; 96.3 0.032 7E-07 49.6 9.8 42 48-90 21-62 (249)
208 cd01120 RecA-like_NTPases RecA 96.3 0.0069 1.5E-07 49.3 4.9 36 55-90 3-38 (165)
209 PF02492 cobW: CobW/HypB/UreG, 96.2 0.016 3.6E-07 48.7 7.1 36 54-90 3-38 (178)
210 TIGR00485 EF-Tu translation el 96.2 0.05 1.1E-06 51.9 11.2 66 166-231 74-141 (394)
211 PF13481 AAA_25: AAA domain; P 96.2 0.0067 1.4E-07 51.5 4.5 38 53-90 34-81 (193)
212 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.014 3.1E-07 51.2 6.7 42 48-90 17-64 (235)
213 PRK12735 elongation factor Tu; 96.2 0.066 1.4E-06 51.1 11.6 66 166-231 74-141 (396)
214 TIGR00682 lpxK tetraacyldisacc 96.1 0.015 3.3E-07 53.3 6.8 43 48-90 26-69 (311)
215 PRK05986 cob(I)alamin adenolsy 96.1 0.045 9.8E-07 46.3 8.9 36 52-88 24-59 (191)
216 TIGR00073 hypB hydrogenase acc 96.1 0.28 6E-06 42.2 14.1 42 47-90 19-60 (207)
217 COG0467 RAD55 RecA-superfamily 96.1 0.045 9.8E-07 49.0 9.5 46 48-94 21-66 (260)
218 cd02027 APSK Adenosine 5'-phos 96.0 0.0089 1.9E-07 48.8 4.4 36 55-90 3-38 (149)
219 KOG2749 mRNA cleavage and poly 95.9 0.069 1.5E-06 49.1 9.7 47 48-95 101-147 (415)
220 cd04168 TetM_like Tet(M)-like 95.9 0.045 9.7E-07 48.3 8.5 89 166-257 63-154 (237)
221 KOG0744 AAA+-type ATPase [Post 95.9 0.026 5.5E-07 51.3 6.9 153 51-216 178-346 (423)
222 cd00880 Era_like Era (E. coli 95.9 0.069 1.5E-06 42.6 9.1 66 166-232 44-118 (163)
223 TIGR03878 thermo_KaiC_2 KaiC d 95.9 0.014 3E-07 52.3 5.3 40 51-90 36-75 (259)
224 PF00009 GTP_EFTU: Elongation 95.9 0.015 3.2E-07 49.3 5.1 65 166-231 69-135 (188)
225 cd01122 GP4d_helicase GP4d_hel 95.9 0.013 2.8E-07 52.7 5.0 39 52-90 31-70 (271)
226 PRK10218 GTP-binding protein; 95.9 0.15 3.2E-06 51.3 12.8 65 166-231 67-133 (607)
227 PRK06762 hypothetical protein; 95.8 0.014 3E-07 48.3 4.8 37 49-89 1-37 (166)
228 PRK00652 lpxK tetraacyldisacch 95.8 0.021 4.6E-07 52.7 6.3 42 49-90 48-90 (325)
229 PRK09302 circadian clock prote 95.8 0.053 1.2E-06 53.5 9.6 42 48-90 29-71 (509)
230 PRK05480 uridine/cytidine kina 95.8 0.024 5.1E-07 48.9 6.3 40 48-90 4-43 (209)
231 TIGR03574 selen_PSTK L-seryl-t 95.8 0.012 2.5E-07 52.4 4.3 35 55-89 3-37 (249)
232 PF03796 DnaB_C: DnaB-like hel 95.8 0.016 3.5E-07 51.8 5.3 40 51-90 19-59 (259)
233 cd00984 DnaB_C DnaB helicase C 95.8 0.017 3.7E-07 51.0 5.3 39 52-90 14-53 (242)
234 cd04137 RheB Rheb (Ras Homolog 95.7 0.23 4.9E-06 41.3 11.8 66 166-231 48-119 (180)
235 TIGR03575 selen_PSTK_euk L-ser 95.7 0.013 2.8E-07 54.4 4.3 38 54-91 2-40 (340)
236 TIGR00101 ureG urease accessor 95.7 0.59 1.3E-05 40.0 14.4 37 52-90 3-39 (199)
237 TIGR00455 apsK adenylylsulfate 95.7 0.027 5.8E-07 47.6 6.0 42 48-90 16-57 (184)
238 PRK05433 GTP-binding protein L 95.7 0.1 2.2E-06 52.4 11.0 65 166-231 73-139 (600)
239 TIGR03594 GTPase_EngA ribosome 95.6 0.071 1.5E-06 51.3 9.5 64 167-231 47-120 (429)
240 COG3367 Uncharacterized conser 95.6 0.27 5.8E-06 44.7 12.2 171 48-262 146-330 (339)
241 PF13207 AAA_17: AAA domain; P 95.6 0.015 3.3E-07 45.2 4.0 28 53-84 2-29 (121)
242 PF13245 AAA_19: Part of AAA d 95.6 0.027 5.9E-07 40.2 4.8 36 53-88 12-51 (76)
243 PRK09302 circadian clock prote 95.6 0.071 1.5E-06 52.6 9.4 41 49-90 272-312 (509)
244 PF00485 PRK: Phosphoribulokin 95.6 0.019 4E-07 49.0 4.6 38 52-90 1-42 (194)
245 KOG0635 Adenosine 5'-phosphosu 95.5 0.037 7.9E-07 44.6 5.6 55 47-102 28-82 (207)
246 PRK05439 pantothenate kinase; 95.5 0.034 7.4E-07 50.9 6.3 43 47-90 83-127 (311)
247 PRK03003 GTP-binding protein D 95.5 0.072 1.6E-06 52.0 9.0 64 167-231 86-159 (472)
248 PRK10512 selenocysteinyl-tRNA- 95.5 0.065 1.4E-06 54.0 8.8 65 167-231 51-117 (614)
249 PF01695 IstB_IS21: IstB-like 95.5 0.021 4.6E-07 48.1 4.5 39 49-88 46-84 (178)
250 smart00382 AAA ATPases associa 95.4 0.015 3.3E-07 45.6 3.4 39 51-90 3-41 (148)
251 PRK04301 radA DNA repair and r 95.4 0.053 1.2E-06 50.1 7.4 40 50-90 102-147 (317)
252 PRK05541 adenylylsulfate kinas 95.4 0.036 7.7E-07 46.4 5.7 40 48-88 5-44 (176)
253 PRK09165 replicative DNA helic 95.4 0.023 4.9E-07 55.8 5.0 44 51-94 217-275 (497)
254 PRK10463 hydrogenase nickel in 95.3 0.099 2.1E-06 47.3 8.6 43 46-90 100-142 (290)
255 cd01885 EF2 EF2 (for archaea a 95.3 0.073 1.6E-06 46.5 7.6 65 166-231 72-138 (222)
256 COG1484 DnaC DNA replication p 95.3 0.026 5.6E-07 50.4 4.8 38 49-87 104-141 (254)
257 TIGR03880 KaiC_arch_3 KaiC dom 95.3 0.041 9E-07 48.0 6.0 41 49-90 15-55 (224)
258 TIGR02238 recomb_DMC1 meiotic 95.3 0.084 1.8E-06 48.6 8.2 39 52-90 97-141 (313)
259 COG1618 Predicted nucleotide k 95.3 0.042 9.1E-07 44.9 5.4 39 48-87 3-41 (179)
260 cd02019 NK Nucleoside/nucleoti 95.2 0.041 8.9E-07 38.4 4.7 32 53-87 2-33 (69)
261 TIGR03600 phage_DnaB phage rep 95.2 0.032 6.8E-07 53.7 5.4 40 51-90 194-234 (421)
262 COG0378 HypB Ni2+-binding GTPa 95.2 0.094 2E-06 44.3 7.4 40 50-91 13-52 (202)
263 COG0050 TufB GTPases - transla 95.2 0.14 3.1E-06 45.9 8.9 119 167-296 75-200 (394)
264 cd04166 CysN_ATPS CysN_ATPS su 95.1 0.1 2.2E-06 45.0 7.8 66 166-231 76-143 (208)
265 PRK07261 topology modulation p 95.1 0.28 6E-06 40.9 10.2 36 170-206 61-96 (171)
266 TIGR00475 selB selenocysteine- 95.1 0.06 1.3E-06 53.9 7.1 65 167-231 50-116 (581)
267 PRK14491 putative bifunctional 95.1 0.054 1.2E-06 54.4 6.8 41 49-90 9-49 (597)
268 PRK09519 recA DNA recombinatio 95.1 0.17 3.6E-06 52.0 10.2 41 49-90 59-99 (790)
269 cd02025 PanK Pantothenate kina 95.1 0.037 8.1E-07 48.3 5.0 39 52-91 1-41 (220)
270 TIGR00708 cobA cob(I)alamin ad 95.0 0.049 1.1E-06 45.4 5.3 37 50-88 6-42 (173)
271 PRK14489 putative bifunctional 95.0 0.061 1.3E-06 50.7 6.6 42 48-90 203-244 (366)
272 PRK12297 obgE GTPase CgtA; Rev 95.0 0.39 8.4E-06 46.1 12.0 65 166-230 205-286 (424)
273 COG4088 Predicted nucleotide k 95.0 0.027 5.8E-07 47.9 3.6 36 55-90 5-40 (261)
274 PLN03187 meiotic recombination 95.0 0.12 2.5E-06 48.2 8.1 40 51-90 126-171 (344)
275 PHA00729 NTP-binding motif con 94.9 0.038 8.3E-07 48.1 4.5 25 51-76 18-42 (226)
276 PRK06526 transposase; Provisio 94.9 0.021 4.6E-07 50.9 2.9 35 51-86 99-133 (254)
277 PRK08506 replicative DNA helic 94.8 0.049 1.1E-06 53.1 5.5 44 51-94 192-235 (472)
278 COG0523 Putative GTPases (G3E 94.8 0.56 1.2E-05 43.3 12.1 35 54-90 4-38 (323)
279 PRK12299 obgE GTPase CgtA; Rev 94.8 0.5 1.1E-05 43.9 11.8 156 47-231 109-284 (335)
280 smart00053 DYNc Dynamin, GTPas 94.7 1.1 2.3E-05 39.6 13.1 65 167-232 125-206 (240)
281 PRK09183 transposase/IS protei 94.7 0.06 1.3E-06 48.2 5.3 37 50-87 102-138 (259)
282 cd02023 UMPK Uridine monophosp 94.6 0.056 1.2E-06 46.1 4.7 36 52-90 1-36 (198)
283 PRK06749 replicative DNA helic 94.5 0.055 1.2E-06 52.1 5.1 40 51-90 186-225 (428)
284 PRK08760 replicative DNA helic 94.5 0.054 1.2E-06 52.9 5.0 41 51-91 229-270 (476)
285 PRK07414 cob(I)yrinic acid a,c 94.5 0.35 7.7E-06 40.4 9.1 39 48-88 20-58 (178)
286 PRK12377 putative replication 94.5 0.062 1.3E-06 47.7 5.0 37 51-88 102-138 (248)
287 TIGR02729 Obg_CgtA Obg family 94.5 0.53 1.2E-05 43.7 11.3 65 167-231 205-286 (329)
288 TIGR03420 DnaA_homol_Hda DnaA 94.5 0.068 1.5E-06 46.5 5.2 41 49-90 37-77 (226)
289 TIGR02655 circ_KaiC circadian 94.4 0.88 1.9E-05 44.7 13.3 42 48-90 19-61 (484)
290 PRK01906 tetraacyldisaccharide 94.4 0.11 2.3E-06 48.3 6.6 43 48-90 54-97 (338)
291 PTZ00035 Rad51 protein; Provis 94.4 0.18 3.8E-06 47.0 8.0 41 49-90 117-163 (337)
292 PF13191 AAA_16: AAA ATPase do 94.4 0.1 2.2E-06 43.6 5.8 43 47-90 21-63 (185)
293 PRK12298 obgE GTPase CgtA; Rev 94.4 0.41 8.9E-06 45.5 10.4 157 46-231 109-288 (390)
294 cd00009 AAA The AAA+ (ATPases 94.3 0.091 2E-06 41.5 5.3 41 49-90 18-58 (151)
295 TIGR02475 CobW cobalamin biosy 94.3 1.4 3E-05 41.2 13.7 36 53-90 6-41 (341)
296 PRK08903 DnaA regulatory inact 94.3 0.19 4.2E-06 43.8 7.6 38 51-89 43-80 (227)
297 PRK06217 hypothetical protein; 94.3 0.072 1.6E-06 44.9 4.7 33 51-89 2-34 (183)
298 TIGR00041 DTMP_kinase thymidyl 94.3 0.097 2.1E-06 44.4 5.5 37 50-87 3-39 (195)
299 PLN02924 thymidylate kinase 94.3 0.11 2.5E-06 45.2 6.0 41 46-87 12-52 (220)
300 cd04111 Rab39 Rab39 subfamily. 94.2 0.91 2E-05 39.1 11.6 142 167-329 52-201 (211)
301 PRK08006 replicative DNA helic 94.2 0.077 1.7E-06 51.7 5.3 40 51-90 224-264 (471)
302 PRK11537 putative GTP-binding 94.2 0.75 1.6E-05 42.5 11.6 36 53-90 6-41 (318)
303 PF02421 FeoB_N: Ferrous iron 94.2 0.36 7.8E-06 39.6 8.4 92 166-261 46-147 (156)
304 COG2895 CysN GTPases - Sulfate 94.1 0.21 4.6E-06 46.0 7.5 97 166-263 85-188 (431)
305 cd04177 RSR1 RSR1 subgroup. R 94.1 0.95 2E-05 37.1 11.2 65 167-231 49-119 (168)
306 PRK09518 bifunctional cytidyla 94.1 0.53 1.2E-05 48.5 11.5 65 166-231 322-396 (712)
307 TIGR00235 udk uridine kinase. 94.1 0.083 1.8E-06 45.5 4.8 40 48-90 4-43 (207)
308 TIGR00665 DnaB replicative DNA 94.1 0.087 1.9E-06 50.9 5.4 43 51-93 195-238 (434)
309 cd01887 IF2_eIF5B IF2/eIF5B (i 94.1 0.19 4.1E-06 41.1 6.8 65 166-231 49-115 (168)
310 cd04155 Arl3 Arl3 subfamily. 94.0 1.4 3E-05 36.2 11.9 66 166-231 57-128 (173)
311 PF01935 DUF87: Domain of unkn 94.0 0.094 2E-06 45.8 5.0 39 51-90 24-63 (229)
312 PLN03186 DNA repair protein RA 94.0 0.18 4E-06 46.9 7.0 40 51-90 123-168 (342)
313 cd01672 TMPK Thymidine monopho 93.9 0.1 2.2E-06 44.1 5.1 36 52-88 2-37 (200)
314 PRK09270 nucleoside triphospha 93.9 0.13 2.8E-06 45.1 5.7 42 48-90 31-73 (229)
315 PRK08840 replicative DNA helic 93.9 0.097 2.1E-06 50.9 5.3 40 51-90 217-257 (464)
316 PRK05642 DNA replication initi 93.8 0.088 1.9E-06 46.3 4.5 35 55-89 49-83 (234)
317 PF08433 KTI12: Chromatin asso 93.8 0.083 1.8E-06 47.5 4.4 34 55-88 5-38 (270)
318 PRK05748 replicative DNA helic 93.8 0.097 2.1E-06 50.8 5.2 42 51-92 203-245 (448)
319 PRK06835 DNA replication prote 93.8 0.086 1.9E-06 48.9 4.5 37 51-88 184-220 (329)
320 TIGR00554 panK_bact pantothena 93.8 0.16 3.5E-06 46.2 6.2 43 48-91 60-104 (290)
321 PRK06904 replicative DNA helic 93.7 0.099 2.2E-06 51.0 5.1 41 51-91 221-262 (472)
322 PRK08727 hypothetical protein; 93.7 0.096 2.1E-06 46.1 4.6 36 52-88 43-78 (233)
323 PRK08939 primosomal protein Dn 93.7 0.1 2.2E-06 47.9 4.9 38 50-88 156-193 (306)
324 KOG1805 DNA replication helica 93.7 0.11 2.4E-06 53.5 5.4 36 53-88 687-722 (1100)
325 COG3598 RepA RecA-family ATPas 93.7 0.31 6.7E-06 44.4 7.7 43 52-94 90-142 (402)
326 PF13173 AAA_14: AAA domain 93.7 0.11 2.5E-06 40.9 4.6 38 51-90 3-40 (128)
327 TIGR03594 GTPase_EngA ribosome 93.7 1.2 2.7E-05 42.7 12.6 64 167-231 220-296 (429)
328 PLN03046 D-glycerate 3-kinase; 93.7 0.14 3.1E-06 48.6 5.7 41 49-90 211-251 (460)
329 PRK09866 hypothetical protein; 93.6 0.36 7.8E-06 48.3 8.6 67 165-231 228-302 (741)
330 COG4240 Predicted kinase [Gene 93.6 0.13 2.7E-06 44.6 4.8 40 51-90 50-90 (300)
331 COG0572 Udk Uridine kinase [Nu 93.5 0.11 2.3E-06 44.9 4.3 42 49-93 7-48 (218)
332 PRK05537 bifunctional sulfate 93.5 0.18 4E-06 50.3 6.6 43 47-90 389-432 (568)
333 PF00931 NB-ARC: NB-ARC domain 93.5 0.28 6.1E-06 44.2 7.4 42 48-90 17-60 (287)
334 PRK06321 replicative DNA helic 93.4 0.13 2.8E-06 50.2 5.3 39 52-90 227-266 (472)
335 PRK08118 topology modulation p 93.4 0.088 1.9E-06 43.8 3.7 24 51-75 2-25 (167)
336 COG0237 CoaE Dephospho-CoA kin 93.4 0.12 2.6E-06 44.3 4.5 34 49-89 1-34 (201)
337 PF01268 FTHFS: Formate--tetra 93.4 0.14 3.1E-06 49.9 5.4 52 47-101 51-105 (557)
338 PRK06893 DNA replication initi 93.3 0.13 2.8E-06 45.1 4.8 37 51-88 40-76 (229)
339 PRK08116 hypothetical protein; 93.2 0.12 2.7E-06 46.4 4.6 36 52-88 116-151 (268)
340 PRK13949 shikimate kinase; Pro 93.2 0.55 1.2E-05 39.0 8.2 32 51-88 2-33 (169)
341 PRK00131 aroK shikimate kinase 93.2 0.11 2.4E-06 43.0 4.0 33 50-88 4-36 (175)
342 TIGR02034 CysN sulfate adenyly 93.2 0.2 4.4E-06 47.9 6.2 66 166-231 79-146 (406)
343 PRK08181 transposase; Validate 93.2 0.12 2.6E-06 46.5 4.3 35 52-87 108-142 (269)
344 PF00910 RNA_helicase: RNA hel 93.1 0.18 3.9E-06 38.5 4.7 22 57-78 4-25 (107)
345 PRK12296 obgE GTPase CgtA; Rev 93.1 0.38 8.2E-06 47.0 7.9 155 46-230 109-296 (500)
346 PTZ00301 uridine kinase; Provi 93.1 0.19 4.2E-06 43.4 5.3 39 51-90 4-44 (210)
347 PLN02796 D-glycerate 3-kinase 93.1 0.18 3.8E-06 46.8 5.3 41 49-90 99-139 (347)
348 PF02572 CobA_CobO_BtuR: ATP:c 93.0 0.32 7E-06 40.5 6.4 30 59-88 11-40 (172)
349 cd01882 BMS1 Bms1. Bms1 is an 93.0 0.46 9.9E-06 41.5 7.6 63 167-230 83-145 (225)
350 cd00154 Rab Rab family. Rab G 92.9 0.78 1.7E-05 36.5 8.6 66 166-231 48-118 (159)
351 PRK07933 thymidylate kinase; V 92.9 0.2 4.3E-06 43.4 5.3 36 52-88 2-37 (213)
352 PRK05636 replicative DNA helic 92.9 0.17 3.7E-06 49.8 5.2 40 51-90 265-305 (505)
353 PF12846 AAA_10: AAA-like doma 92.9 0.17 3.6E-06 45.8 4.9 33 58-90 8-40 (304)
354 PRK06547 hypothetical protein; 92.8 0.16 3.4E-06 42.5 4.3 36 48-89 13-48 (172)
355 PRK05506 bifunctional sulfate 92.8 0.18 3.8E-06 51.3 5.4 43 47-90 457-499 (632)
356 KOG1423 Ras-like GTPase ERA [C 92.8 0.41 9E-06 43.3 7.0 35 49-90 71-105 (379)
357 PF00350 Dynamin_N: Dynamin fa 92.7 0.26 5.7E-06 40.5 5.6 63 166-228 100-168 (168)
358 TIGR00991 3a0901s02IAP34 GTP-b 92.7 2.2 4.7E-05 39.1 11.7 66 166-231 85-166 (313)
359 PF05729 NACHT: NACHT domain 92.7 0.14 3E-06 41.7 3.8 27 53-79 2-28 (166)
360 PRK07004 replicative DNA helic 92.7 0.18 3.8E-06 49.1 5.0 40 51-90 213-253 (460)
361 KOG3220 Similar to bacterial d 92.6 0.21 4.6E-06 42.3 4.7 42 163-207 103-144 (225)
362 COG2109 BtuR ATP:corrinoid ade 92.5 0.56 1.2E-05 39.4 7.1 31 58-88 35-65 (198)
363 PF13086 AAA_11: AAA domain; P 92.5 0.19 4.1E-06 43.5 4.6 35 53-87 19-61 (236)
364 PRK06921 hypothetical protein; 92.5 0.19 4.1E-06 45.2 4.7 37 50-87 117-154 (266)
365 PRK13507 formate--tetrahydrofo 92.5 0.21 4.6E-06 48.7 5.1 52 47-101 60-114 (587)
366 TIGR02239 recomb_RAD51 DNA rep 92.5 0.44 9.5E-06 44.0 7.1 40 50-90 96-141 (316)
367 PRK08084 DNA replication initi 92.4 0.2 4.3E-06 44.2 4.6 37 52-89 47-83 (235)
368 cd02024 NRK1 Nicotinamide ribo 92.2 0.15 3.2E-06 43.2 3.5 32 53-89 2-33 (187)
369 PRK00698 tmk thymidylate kinas 92.2 0.34 7.3E-06 41.3 5.8 35 50-85 3-37 (205)
370 PF13401 AAA_22: AAA domain; P 92.2 0.15 3.3E-06 39.9 3.3 38 53-90 6-48 (131)
371 cd01891 TypA_BipA TypA (tyrosi 92.2 0.93 2E-05 38.3 8.4 65 166-231 64-130 (194)
372 PLN02348 phosphoribulokinase 92.2 0.34 7.3E-06 45.7 6.0 42 48-90 47-103 (395)
373 PF09848 DUF2075: Uncharacteri 92.2 0.21 4.5E-06 46.8 4.7 38 52-89 2-41 (352)
374 PF13604 AAA_30: AAA domain; P 92.1 0.24 5.3E-06 42.3 4.7 36 51-87 19-54 (196)
375 PLN02759 Formate--tetrahydrofo 92.1 0.3 6.6E-06 48.0 5.7 52 47-101 66-121 (637)
376 cd01890 LepA LepA subfamily. 92.0 1 2.2E-05 37.3 8.3 64 166-231 66-132 (179)
377 TIGR02236 recomb_radA DNA repa 92.0 0.28 6E-06 45.1 5.2 40 50-90 95-140 (310)
378 PRK05506 bifunctional sulfate 91.9 0.27 5.9E-06 49.9 5.5 66 166-231 103-170 (632)
379 cd01883 EF1_alpha Eukaryotic e 91.9 0.29 6.3E-06 42.5 5.1 66 166-231 76-150 (219)
380 PTZ00327 eukaryotic translatio 91.9 0.36 7.7E-06 46.9 6.1 66 166-231 116-184 (460)
381 PF13671 AAA_33: AAA domain; P 91.9 0.13 2.8E-06 41.0 2.7 31 54-89 2-32 (143)
382 PRK04040 adenylate kinase; Pro 91.9 0.27 5.7E-06 41.8 4.6 26 50-76 2-27 (188)
383 PRK14490 putative bifunctional 91.9 0.44 9.6E-06 45.0 6.6 39 48-88 3-41 (369)
384 PRK06851 hypothetical protein; 91.8 0.45 9.8E-06 44.6 6.4 40 50-90 214-253 (367)
385 PRK05291 trmE tRNA modificatio 91.8 1.1 2.5E-05 43.4 9.5 63 166-231 262-334 (449)
386 cd04106 Rab23_lke Rab23-like s 91.7 1.2 2.6E-05 36.0 8.3 66 166-231 50-119 (162)
387 PRK13351 elongation factor G; 91.7 0.73 1.6E-05 47.3 8.3 85 166-253 72-158 (687)
388 PRK06761 hypothetical protein; 91.7 0.21 4.5E-06 45.2 3.8 39 50-89 3-42 (282)
389 TIGR00484 EF-G translation elo 91.6 0.84 1.8E-05 46.9 8.7 89 166-257 74-165 (689)
390 PRK05124 cysN sulfate adenylyl 91.6 0.3 6.5E-06 47.7 5.2 66 166-231 106-173 (474)
391 COG1072 CoaA Panthothenate kin 91.6 0.43 9.3E-06 42.6 5.7 41 48-89 80-122 (283)
392 COG0480 FusA Translation elong 91.6 0.65 1.4E-05 47.4 7.7 88 167-257 76-166 (697)
393 cd02021 GntK Gluconate kinase 91.6 0.19 4E-06 40.7 3.3 32 54-90 2-33 (150)
394 PF08423 Rad51: Rad51; InterP 91.6 0.24 5.1E-06 44.3 4.2 40 50-90 38-83 (256)
395 PF06414 Zeta_toxin: Zeta toxi 91.6 0.19 4.2E-06 42.9 3.5 41 48-90 12-52 (199)
396 PRK03731 aroL shikimate kinase 91.5 0.27 5.8E-06 40.7 4.2 35 49-89 1-35 (171)
397 cd01888 eIF2_gamma eIF2-gamma 91.5 0.38 8.2E-06 41.2 5.2 65 167-231 83-150 (203)
398 TIGR01360 aden_kin_iso1 adenyl 91.4 0.23 5.1E-06 41.6 3.8 25 50-75 3-27 (188)
399 PRK13946 shikimate kinase; Pro 91.4 0.28 6E-06 41.4 4.2 34 50-89 10-43 (184)
400 PF10662 PduV-EutP: Ethanolami 91.3 5.6 0.00012 32.1 11.4 42 188-230 89-131 (143)
401 cd04145 M_R_Ras_like M-Ras/R-R 91.3 2.4 5.1E-05 34.2 9.7 65 167-231 50-120 (164)
402 PF00004 AAA: ATPase family as 91.3 0.38 8.2E-06 37.5 4.7 30 57-89 4-33 (132)
403 PF03266 NTPase_1: NTPase; In 91.2 0.34 7.3E-06 40.3 4.5 31 54-85 3-33 (168)
404 COG1102 Cmk Cytidylate kinase 91.2 0.22 4.8E-06 40.8 3.1 22 55-76 4-25 (179)
405 PRK12323 DNA polymerase III su 91.1 2.4 5.2E-05 42.8 10.9 29 47-76 35-63 (700)
406 cd01852 AIG1 AIG1 (avrRpt2-ind 91.1 1.5 3.3E-05 37.1 8.6 64 166-230 48-128 (196)
407 COG2074 2-phosphoglycerate kin 91.1 0.22 4.8E-06 43.8 3.3 26 51-76 89-114 (299)
408 COG2759 MIS1 Formyltetrahydrof 91.0 0.23 4.9E-06 47.1 3.5 53 46-101 48-103 (554)
409 COG0305 DnaB Replicative DNA h 91.0 1.2 2.7E-05 42.6 8.5 40 51-90 196-236 (435)
410 PF07728 AAA_5: AAA domain (dy 90.9 0.45 9.7E-06 37.9 4.8 38 58-99 6-43 (139)
411 TIGR01394 TypA_BipA GTP-bindin 90.8 0.8 1.7E-05 46.1 7.4 65 166-231 63-129 (594)
412 cd01864 Rab19 Rab19 subfamily. 90.8 2 4.2E-05 35.0 8.7 65 167-231 52-121 (165)
413 PRK09112 DNA polymerase III su 90.8 2.4 5.3E-05 39.7 10.2 30 47-77 42-71 (351)
414 PF01926 MMR_HSR1: 50S ribosom 90.7 0.95 2.1E-05 34.7 6.4 60 166-227 46-116 (116)
415 KOG3062 RNA polymerase II elon 90.7 2 4.4E-05 37.3 8.6 34 52-86 3-38 (281)
416 PF13238 AAA_18: AAA domain; P 90.6 0.22 4.7E-06 38.7 2.7 20 56-75 3-22 (129)
417 cd04101 RabL4 RabL4 (Rab-like4 90.6 1.8 4E-05 35.0 8.4 66 166-231 51-120 (164)
418 cd04121 Rab40 Rab40 subfamily. 90.6 6.5 0.00014 33.2 11.9 112 167-298 55-172 (189)
419 cd04139 RalA_RalB RalA/RalB su 90.6 3.1 6.6E-05 33.5 9.7 66 166-231 47-118 (164)
420 cd01866 Rab2 Rab2 subfamily. 90.4 2.8 6E-05 34.3 9.4 65 167-231 53-122 (168)
421 cd04146 RERG_RasL11_like RERG/ 90.4 2.5 5.4E-05 34.4 9.0 64 167-230 47-118 (165)
422 COG0125 Tmk Thymidylate kinase 90.3 0.67 1.4E-05 40.0 5.6 37 49-86 2-38 (208)
423 PHA02530 pseT polynucleotide k 90.3 0.29 6.3E-06 44.6 3.6 34 52-89 3-36 (300)
424 TIGR03172 probable selenium-de 90.3 0.4 8.6E-06 42.0 4.2 30 52-84 1-30 (232)
425 PRK13947 shikimate kinase; Pro 90.3 0.49 1.1E-05 39.1 4.7 32 52-89 3-34 (171)
426 PTZ00386 formyl tetrahydrofola 90.2 0.43 9.4E-06 46.9 4.8 52 47-101 65-120 (625)
427 cd01131 PilT Pilus retraction 90.2 5.3 0.00011 34.0 11.1 35 52-87 3-38 (198)
428 PRK13973 thymidylate kinase; P 90.2 0.63 1.4E-05 40.3 5.4 36 50-86 3-38 (213)
429 PRK12339 2-phosphoglycerate ki 90.2 0.33 7.1E-06 41.5 3.5 34 52-89 4-37 (197)
430 cd04148 RGK RGK subfamily. Th 90.1 2.5 5.4E-05 36.7 9.2 65 166-230 49-118 (221)
431 PRK12317 elongation factor 1-a 90.0 0.61 1.3E-05 44.9 5.7 66 166-231 83-152 (425)
432 cd01860 Rab5_related Rab5-rela 90.0 2.8 6E-05 33.9 9.0 66 166-231 49-119 (163)
433 PRK11174 cysteine/glutathione 89.8 1.1 2.3E-05 45.2 7.5 36 47-84 373-408 (588)
434 smart00175 RAB Rab subfamily o 89.7 2.7 5.8E-05 33.9 8.7 65 167-231 49-118 (164)
435 PRK06851 hypothetical protein; 89.7 0.89 1.9E-05 42.7 6.3 46 50-95 29-74 (367)
436 PTZ00451 dephospho-CoA kinase; 89.7 0.52 1.1E-05 41.7 4.5 35 50-90 1-35 (244)
437 cd01861 Rab6 Rab6 subfamily. 89.7 3.8 8.3E-05 32.9 9.6 65 167-231 49-118 (161)
438 PRK14734 coaE dephospho-CoA ki 89.7 0.6 1.3E-05 40.0 4.8 32 50-88 1-32 (200)
439 PRK14527 adenylate kinase; Pro 89.7 0.47 1E-05 40.2 4.2 27 48-75 4-30 (191)
440 PRK04220 2-phosphoglycerate ki 89.6 0.58 1.3E-05 42.6 4.9 34 52-89 93-126 (301)
441 cd04127 Rab27A Rab27a subfamil 89.6 2.6 5.6E-05 34.8 8.6 66 166-231 62-133 (180)
442 cd04112 Rab26 Rab26 subfamily. 89.5 2.5 5.5E-05 35.5 8.6 64 167-230 50-118 (191)
443 cd04110 Rab35 Rab35 subfamily. 89.3 3.5 7.5E-05 35.0 9.4 65 167-231 55-123 (199)
444 PRK05707 DNA polymerase III su 89.3 9.4 0.0002 35.4 12.7 121 47-202 19-148 (328)
445 PLN02422 dephospho-CoA kinase 89.2 0.6 1.3E-05 41.0 4.5 34 50-90 1-34 (232)
446 cd04122 Rab14 Rab14 subfamily. 89.2 3.7 7.9E-05 33.4 9.1 66 166-231 50-120 (166)
447 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 89.1 3.6 7.9E-05 33.4 9.0 64 167-230 51-119 (166)
448 COG1100 GTPase SAR1 and relate 89.1 1.7 3.6E-05 37.3 7.3 66 167-232 54-125 (219)
449 PRK10536 hypothetical protein; 89.1 1.1 2.3E-05 40.0 6.0 33 53-85 76-109 (262)
450 PRK07773 replicative DNA helic 89.0 0.58 1.3E-05 49.5 5.1 42 52-93 218-260 (886)
451 TIGR02640 gas_vesic_GvpN gas v 89.0 0.69 1.5E-05 41.4 4.9 35 52-90 23-57 (262)
452 cd01867 Rab8_Rab10_Rab13_like 89.0 3.7 8.1E-05 33.5 9.1 65 167-231 52-121 (167)
453 PRK14730 coaE dephospho-CoA ki 89.0 0.68 1.5E-05 39.5 4.7 33 51-89 2-34 (195)
454 PRK07003 DNA polymerase III su 89.0 4.3 9.3E-05 41.8 10.8 41 32-76 23-63 (830)
455 PRK08769 DNA polymerase III su 89.0 9 0.0002 35.4 12.3 44 29-76 8-51 (319)
456 PRK12338 hypothetical protein; 89.0 0.41 8.8E-06 44.0 3.4 34 52-89 5-38 (319)
457 PRK13975 thymidylate kinase; P 88.9 0.55 1.2E-05 39.8 4.0 27 49-76 1-27 (196)
458 cd01895 EngA2 EngA2 subfamily. 88.8 1.8 3.9E-05 35.1 7.1 65 166-231 49-126 (174)
459 cd04161 Arl2l1_Arl13_like Arl2 88.8 3.4 7.5E-05 33.8 8.7 66 166-231 42-113 (167)
460 COG1936 Predicted nucleotide k 88.8 0.55 1.2E-05 39.0 3.7 26 52-82 2-27 (180)
461 cd02026 PRK Phosphoribulokinas 88.7 0.37 8E-06 43.5 3.0 34 52-88 1-34 (273)
462 PF02223 Thymidylate_kin: Thym 88.7 0.56 1.2E-05 39.4 4.0 30 60-90 5-34 (186)
463 PF06418 CTP_synth_N: CTP synt 88.7 0.74 1.6E-05 40.8 4.7 40 51-90 2-42 (276)
464 cd04176 Rap2 Rap2 subgroup. T 88.6 5.2 0.00011 32.3 9.6 64 167-230 49-118 (163)
465 cd00876 Ras Ras family. The R 88.6 4.4 9.5E-05 32.3 9.1 66 167-232 47-118 (160)
466 PRK07429 phosphoribulokinase; 88.6 0.82 1.8E-05 42.4 5.2 38 49-89 7-44 (327)
467 cd04109 Rab28 Rab28 subfamily. 88.6 3.6 7.7E-05 35.4 9.0 66 166-231 49-122 (215)
468 cd04141 Rit_Rin_Ric Rit/Rin/Ri 88.5 3.8 8.2E-05 33.8 8.8 65 167-231 50-120 (172)
469 TIGR01313 therm_gnt_kin carboh 88.5 0.48 1.1E-05 38.8 3.3 30 56-90 3-32 (163)
470 PRK01184 hypothetical protein; 88.5 0.67 1.5E-05 38.9 4.3 31 50-87 1-31 (184)
471 cd01898 Obg Obg subfamily. Th 88.4 2.6 5.7E-05 34.3 7.7 64 167-230 48-126 (170)
472 PRK00081 coaE dephospho-CoA ki 88.3 0.92 2E-05 38.6 5.0 34 49-89 1-34 (194)
473 cd04142 RRP22 RRP22 subfamily. 88.0 5 0.00011 34.1 9.4 65 167-231 49-129 (198)
474 PRK13695 putative NTPase; Prov 87.9 1.2 2.5E-05 37.1 5.4 30 53-83 3-32 (174)
475 cd02022 DPCK Dephospho-coenzym 87.9 0.67 1.4E-05 38.9 3.9 31 52-89 1-31 (179)
476 PRK03839 putative kinase; Prov 87.9 0.67 1.5E-05 38.7 3.9 30 53-88 3-32 (180)
477 cd01868 Rab11_like Rab11-like. 87.8 4.9 0.00011 32.5 9.0 65 167-231 52-121 (165)
478 TIGR03680 eif2g_arch translati 87.8 1 2.2E-05 43.2 5.4 66 166-231 79-147 (406)
479 PRK14964 DNA polymerase III su 87.8 14 0.00029 36.4 13.2 29 47-76 32-60 (491)
480 KOG0078 GTP-binding protein SE 87.8 7.7 0.00017 33.2 10.0 112 167-298 61-179 (207)
481 cd01865 Rab3 Rab3 subfamily. 87.7 4.5 9.7E-05 32.9 8.7 65 167-231 50-119 (165)
482 PRK13948 shikimate kinase; Pro 87.7 1.2 2.5E-05 37.6 5.2 32 52-89 12-43 (182)
483 COG1855 ATPase (PilT family) [ 87.7 0.62 1.3E-05 44.5 3.7 35 51-86 264-298 (604)
484 cd04175 Rap1 Rap1 subgroup. T 87.6 6.1 0.00013 31.9 9.5 66 166-231 48-119 (164)
485 PF07724 AAA_2: AAA domain (Cd 87.5 1 2.2E-05 37.6 4.7 38 52-90 5-43 (171)
486 COG5256 TEF1 Translation elong 87.5 1.4 3E-05 41.6 5.9 68 165-232 83-159 (428)
487 cd01889 SelB_euk SelB subfamil 87.5 2.1 4.6E-05 36.0 6.8 65 166-231 67-133 (192)
488 PRK14731 coaE dephospho-CoA ki 87.4 1.2 2.6E-05 38.3 5.3 33 49-88 4-36 (208)
489 COG4108 PrfC Peptide chain rel 87.3 2.6 5.6E-05 40.2 7.5 85 166-253 80-166 (528)
490 COG1663 LpxK Tetraacyldisaccha 87.3 0.54 1.2E-05 43.2 3.1 42 49-90 46-88 (336)
491 cd00544 CobU Adenosylcobinamid 87.3 0.9 2E-05 37.8 4.2 32 55-89 3-34 (169)
492 PRK12422 chromosomal replicati 87.3 0.79 1.7E-05 44.4 4.4 37 51-88 142-178 (445)
493 PLN03210 Resistant to P. syrin 87.2 1 2.2E-05 49.1 5.7 39 47-86 204-242 (1153)
494 PRK07560 elongation factor EF- 87.2 1.1 2.3E-05 46.5 5.6 65 166-231 86-152 (731)
495 PF13521 AAA_28: AAA domain; P 87.2 0.73 1.6E-05 37.8 3.6 21 53-74 2-22 (163)
496 cd04136 Rap_like Rap-like subf 87.1 7.5 0.00016 31.2 9.7 64 167-230 49-118 (163)
497 PRK14733 coaE dephospho-CoA ki 87.1 1 2.3E-05 38.7 4.6 35 50-90 6-40 (204)
498 PRK14530 adenylate kinase; Pro 87.0 0.75 1.6E-05 39.8 3.8 24 51-75 4-27 (215)
499 cd04113 Rab4 Rab4 subfamily. 86.9 5.5 0.00012 32.1 8.8 66 166-231 48-118 (161)
500 TIGR02836 spore_IV_A stage IV 86.9 5.4 0.00012 38.2 9.4 113 182-297 137-274 (492)
No 1
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-42 Score=288.52 Aligned_cols=263 Identities=46% Similarity=0.761 Sum_probs=239.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
|+++|.|+|+||||||||+++||+..||++|++|++||+|..-.++...+|++....+++.+++.+.+++.+.+.+++..
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~ 80 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRL 80 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccC
Confidence 67899999999999999999999999999999999999999889999999999998999999999999999999999999
Q ss_pred CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHH
Q 047623 129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 208 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~ 208 (340)
++++++|++.....- .+..+.+..+++.|++ .+|||||+|+|.+.......++..||..++|++|+..|++.+.|
T Consensus 81 ~nL~lLPAsQtrdKd--alt~E~v~~vv~eL~~---~~fDyIi~DsPAGIE~G~~~A~~~Ad~AiVVtnPEvSsVRDsDR 155 (272)
T COG2894 81 ENLFLLPASQTRDKD--ALTPEGVKKVVNELKA---MDFDYIIIDSPAGIEQGFKNAVYFADEAIVVTNPEVSSVRDSDR 155 (272)
T ss_pred CceEecccccccCcc--cCCHHHHHHHHHHHHh---cCCCEEEecCcchHHHHHHhhhhccceEEEEcCCCccccccchh
Confidence 999999998876443 3678889999999996 38999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC----CC---ceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHH
Q 047623 209 VTGLLECDG----IR---DIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLA 281 (340)
Q Consensus 209 ~~~~l~~~~----~~---~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~ 281 (340)
++-.++..+ .. ..++++||+++......++.+.+++.+.+..++++.||+|..+..+.+.|.|+.... ++.+
T Consensus 156 iiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~liGiiPed~~Vi~asN~GePv~l~~-~~~a 234 (272)
T COG2894 156 IIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIGVIPEDQDVLRASNKGEPVILDD-NSDA 234 (272)
T ss_pred heeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCceEEeecCchhhheecCCCCCeEeCC-CchH
Confidence 999998654 22 488999999999888889999999999999999999999999999999999998765 5689
Q ss_pred HHHHHHHHHHHHhccccchhhhccCccccchhhhhccce
Q 047623 282 GLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLGV 320 (340)
Q Consensus 282 ~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (340)
+++|.+++++|.++.-+ .......+++||++++++.
T Consensus 235 ~~Ay~d~arRllGe~vp---~~~~~~~kkg~~~~l~~~~ 270 (272)
T COG2894 235 GKAYRDIARRLLGEEVP---FRFLEEEKKGFLARLKGGF 270 (272)
T ss_pred HHHHHHHHHHHhCCCcc---cccchhhhhhHHHHHhhhh
Confidence 99999999999999743 2345568999999998754
No 2
>CHL00175 minD septum-site determining protein; Validated
Probab=100.00 E-value=1.5e-38 Score=288.67 Aligned_cols=266 Identities=61% Similarity=0.963 Sum_probs=219.5
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD 125 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 125 (340)
.++++++|+|+|+||||||||+|+|||++|++.|++|++||+|++.+++..+||.++....++.+++.+...+++.+...
T Consensus 11 ~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~ 90 (281)
T CHL00175 11 SATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRD 90 (281)
T ss_pred cCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeec
Confidence 35678999999999999999999999999999999999999999989999999988655578889999888888877766
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHH
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRD 205 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~ 205 (340)
+.+++++++|++...... ......+..+++.+.+ .+||||||||||+++.....++..||.+++|++++..++..
T Consensus 91 ~~~~~l~~l~~~~~~~~~--~~~~~~l~~~l~~l~~---~~yD~VIiDtpp~~~~~~~~~l~~aD~viiV~~p~~~si~~ 165 (281)
T CHL00175 91 KRWKNLSLLAISKNRQRY--NVTRKNMNMLVDSLKN---RGYDYILIDCPAGIDVGFINAIAPAQEAIVVTTPEITAIRD 165 (281)
T ss_pred CCCCCeEEEeCCCchhhc--cCCHHHHHHHHHHHHh---CCCCEEEEeCCCCCCHHHHHHHHhcCeeEEEcCCChHHHHH
Confidence 567899999987654221 2334445566666543 16999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHH
Q 047623 206 ADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF 285 (340)
Q Consensus 206 ~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~ 285 (340)
+.++++.+++.+...+++|+|++.++..........+++++.++.++++.||++..+.++...|+|+....|+++++++|
T Consensus 166 ~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ip~d~~v~~a~~~g~~~~~~~~~~~~~~~~ 245 (281)
T CHL00175 166 ADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRDVQEMLGIPLLGAIPEDENVIISTNRGEPLVLNKKLTLSGIAF 245 (281)
T ss_pred HHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHHHHHHhCCCeEEEccCCHhHHHHHHcCCceEeCCCCCHHHHHH
Confidence 99999999987777889999999875432222234667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchhhhccCccccchhhhhccc
Q 047623 286 EQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLG 319 (340)
Q Consensus 286 ~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (340)
++||++|.++.... .......++||+++.++
T Consensus 246 ~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~ 276 (281)
T CHL00175 246 ENAARRLVGKQDYF---IDLDSPSKGPLKRLQKF 276 (281)
T ss_pred HHHHHHHhccccCc---cccccccccHHHHHHHH
Confidence 99999999975321 00112455688887765
No 3
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=100.00 E-value=7.6e-38 Score=279.47 Aligned_cols=251 Identities=35% Similarity=0.556 Sum_probs=207.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN 130 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 130 (340)
++|+|.|+||||||||+|+|||..|+++|++|++||+|++.++++.++|.++. ..++.+++.+...+++.+.... .+
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDK-PVTLHDVLAGEADIKDAIYEGP--FG 77 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCC-CCCHHHHhcCCCCHHHheEeCC--CC
Confidence 48999999999999999999999999999999999999987899999998754 3578888888777777666543 78
Q ss_pred eeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHH
Q 047623 131 FELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVT 210 (340)
Q Consensus 131 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~ 210 (340)
++++|++....... ......+...++.+.+ +|||||||+||+++..+..++..||.+++|+.++..++..+.++.
T Consensus 78 l~~lp~~~~~~~~~-~~~~~~l~~~l~~l~~----~yD~VIiD~p~~~~~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~ 152 (251)
T TIGR01969 78 VKVIPAGVSLEGLR-KADPDKLEDVLKEIID----DTDFLLIDAPAGLERDAVTALAAADELLLVVNPEISSITDALKTK 152 (251)
T ss_pred EEEEeCCCCHHHHh-hcCHHHHHHHHHHHHh----hCCEEEEeCCCccCHHHHHHHHhCCeEEEEECCCCchHHHHHHHH
Confidence 99998775432221 1233445555555544 799999999999999999999999999999999999999988888
Q ss_pred HHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHHHHH
Q 047623 211 GLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 290 (340)
Q Consensus 211 ~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~la~ 290 (340)
+.+...+....++|+|++++.. .....+.+++.++.++++.||+++.+.++...|+|+.++.|+++++++|.+|++
T Consensus 153 ~~~~~~~~~~~~vv~N~~~~~~----~~~~~~~l~~~~~~~~l~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~la~ 228 (251)
T TIGR01969 153 IVAEKLGTAILGVVLNRVTRDK----TELGREEIETILEVPVLGVVPEDPEVRRAAAFGEPVVIYNPNSPAAQAFMELAA 228 (251)
T ss_pred HHHHhcCCceEEEEEECCCchh----hhhHHHHHHHhhCCcEEEEecCCHhHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Confidence 8777777778899999998742 112245677778999999999999999999999999999999999999999999
Q ss_pred HHHhccccchhhhccCccccchhhhhcc
Q 047623 291 RLVEQDSMKAVMVEEEPKRRGFFSFFGL 318 (340)
Q Consensus 291 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (340)
+|.++.... ..+.|++|+++|++
T Consensus 229 ~i~~~~~~~-----~~~~~~~~~~~~~~ 251 (251)
T TIGR01969 229 ELAGIEYEP-----KEPKKEGFIAKVIR 251 (251)
T ss_pred HHHhccccc-----ccchhhhHHHHhhC
Confidence 999987432 46678899988864
No 4
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=100.00 E-value=2.6e-37 Score=277.52 Aligned_cols=260 Identities=53% Similarity=0.860 Sum_probs=213.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
+++|+|+|+|||+||||+|+|||..|+++|++|++||+|++.++++.++|.+.....++.+++.+...+++.+......+
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLK 80 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCC
Confidence 47999999999999999999999999999999999999998899999999876555788898888777777665544457
Q ss_pred ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623 130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRV 209 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~ 209 (340)
+++++|++..... .......+..+++.+.+ .|||||||+||+.+..+..++..||.+++|+.++..++.++.++
T Consensus 81 ~l~~l~~~~~~~~--~~~~~~~l~~~l~~l~~----~~D~viiD~p~~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~ 154 (261)
T TIGR01968 81 NLYLLPASQTRDK--DAVTPEQMKKLVNELKE----EFDYVIIDCPAGIESGFRNAVAPADEAIVVTTPEVSAVRDADRV 154 (261)
T ss_pred CeEEEeCCCchhh--hhCCHHHHHHHHHHHHH----hCCEEEEeCCCCcCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHH
Confidence 9999988764322 22334456667777665 79999999999998888899999999999999999999999999
Q ss_pred HHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHHHH
Q 047623 210 TGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAA 289 (340)
Q Consensus 210 ~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~la 289 (340)
++.++..+....++++|++.+............++++.++.++++.||++..+.++..+|+|+....+ ++++++|.+|+
T Consensus 155 ~~~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~-s~~~~~~~~La 233 (261)
T TIGR01968 155 IGLLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEILSIPLIGVIPEDEAIIVSTNKGEPVVLNDK-SRAGKAFENIA 233 (261)
T ss_pred HHHHHHcCCCceEEEEeCcCchhcccccccCHHHHHHHhCCceeEEccCCHHHHHHHhcCCCeecCCC-ChHHHHHHHHH
Confidence 99998877667899999998754322232346678888999999999999999999999999997654 89999999999
Q ss_pred HHHHhccccchhhhccCccccchhhhhccc
Q 047623 290 WRLVEQDSMKAVMVEEEPKRRGFFSFFGLG 319 (340)
Q Consensus 290 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (340)
++|+++.... ......+++||.+++.+
T Consensus 234 ~~l~~~~~~~---~~~~~~~~~~~~~~~~~ 260 (261)
T TIGR01968 234 RRILGEEVPF---EDLTTQKKGFFARIKRF 260 (261)
T ss_pred HHHhcCCCCc---cccccccccHHHHHhcc
Confidence 9999866332 11224677898887764
No 5
>PRK10818 cell division inhibitor MinD; Provisional
Probab=100.00 E-value=3.5e-35 Score=265.09 Aligned_cols=242 Identities=40% Similarity=0.664 Sum_probs=196.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
|+++|+|.|+||||||||+|+|||.+|+++|++|++||+|++.+++..++|.+.....++.+.+.+...+.+.+.+....
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCc
Confidence 57999999999999999999999999999999999999999888999999987655567778777777777766654445
Q ss_pred CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHH
Q 047623 129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 208 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~ 208 (340)
++++++|++..... ..........+++.+++ ..|||||||+||+.+.....++..||.+++|++|+..++..+.+
T Consensus 81 ~~~~~lp~~~~~~~--~~~~~~~~~~~l~~l~~---~~yd~viiD~p~~~~~~~~~~l~~ad~vivv~~p~~~sl~~~~~ 155 (270)
T PRK10818 81 ENLYILPASQTRDK--DALTREGVAKVLDDLKA---MDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDR 155 (270)
T ss_pred CCEEEecCCCCcch--hhhCHHHHHHHHHHHhh---cCCCEEEEeCCCCccHHHHHHHHhCCeEEEEcCCCchHHHhHHH
Confidence 89999998754321 11233344556665543 26999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-----C--CC-ceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCH
Q 047623 209 VTGLLECD-----G--IR-DIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTL 280 (340)
Q Consensus 209 ~~~~l~~~-----~--~~-~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~ 280 (340)
+++.+... + .+ ..++|+|++++............++.+.+|.++++.||++..+.++...|+|+. ..++++
T Consensus 156 ~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~v~~a~~~G~~v~-~~~~~~ 234 (270)
T PRK10818 156 ILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI-LDIEAD 234 (270)
T ss_pred HHHHHHHhhccccccccccceEEEEeccCHhhhhhcccccHHHHHHHhCCcEEEEecCCHHHHHHHHcCCeeE-eCCCCH
Confidence 99998632 1 11 357999999875422222223567888899999999999999999999999998 578889
Q ss_pred HHHHHHHHHHHHHhcc
Q 047623 281 AGLAFEQAAWRLVEQD 296 (340)
Q Consensus 281 ~~~~~~~la~~i~~~~ 296 (340)
.+++|++|+++|+++.
T Consensus 235 ~~~~~~~la~~l~~~~ 250 (270)
T PRK10818 235 AGKAYADTVDRLLGEE 250 (270)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998764
No 6
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=100.00 E-value=1.4e-33 Score=249.60 Aligned_cols=241 Identities=34% Similarity=0.467 Sum_probs=204.2
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHH-HHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLS-LARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~-la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
++++|+|.|+|||+||||+++||+.. ++.+|++|+++|+|+..++++..||..+.+ .++.+++.+..++++...+...
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~-~~l~dvL~~~~~~~Di~~~~~~ 79 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKP-TTLHDVLAGEASIEDIIYETPQ 79 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCc-ccHHHHHhCCCCHhHeeeecCc
Confidence 56899999999999999999999555 555688889999999999999999999863 4499999999999988887654
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHH
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDAD 207 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~ 207 (340)
.+++++|++...... .....+.+..+++.+.+ .||||++|||++++..+...+..+|.+++|++|+..++.++.
T Consensus 80 -~gl~vipg~~~~~~~-~~~~~~~~~~~~~~l~~----~~D~iliD~~aGl~~~~~~~~~~sd~~viVt~pe~~si~~A~ 153 (262)
T COG0455 80 -DGLYVLPGGSGLEDL-AKLDPEDLEDVIKELEE----LYDYILIDTGAGLSRDTLSFILSSDELVIVTTPEPTSITDAY 153 (262)
T ss_pred -CCEEEeeCCCChHHH-hhcCHHHHHHHHHHHHh----cCCEEEEeCCCCccHHHHHHHHhcCcEEEEeCCCcchHHHHH
Confidence 899999999887665 44677888888888888 689999999999999998888888999999999999999999
Q ss_pred HHHHHHHhcCCCceE--EEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHH
Q 047623 208 RVTGLLECDGIRDIK--MVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF 285 (340)
Q Consensus 208 ~~~~~l~~~~~~~~~--vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~ 285 (340)
.+++.++..+....+ +|+|++.+............+.. ...+.+..+|+++.+.++...|.|+..++|++++++++
T Consensus 154 ~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~--~~~~~~~~i~~~~~v~~a~~~g~p~~~~~p~s~as~ai 231 (262)
T COG0455 154 KTIKILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVV--KQVPVLQVIPFDPEVRRALAEGKPIVLYSPNSKASQAI 231 (262)
T ss_pred HHHHHHHHcCCccccceEEEEecccccchhHHHHHHHHHH--HhCCceeEeccChHHHHHhhcCCcEEEeCCCCHHHHHH
Confidence 999999998887776 99999984432222222222222 33447789999999999999999999999999999999
Q ss_pred HHHHHHHHhcccc
Q 047623 286 EQAAWRLVEQDSM 298 (340)
Q Consensus 286 ~~la~~i~~~~~~ 298 (340)
.+||..+.+....
T Consensus 232 ~~lA~~l~~~~~~ 244 (262)
T COG0455 232 KELAAKLAGLPEP 244 (262)
T ss_pred HHHHHHHhccccc
Confidence 9999999998754
No 7
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=100.00 E-value=5.1e-34 Score=254.04 Aligned_cols=239 Identities=25% Similarity=0.274 Sum_probs=182.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
|++|+|+|+|||+||||+|+|||..|+++|+||++||+|+| ++++.++|.+.....++.+++.+...+.+.+.+. .+
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~ 77 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ-NLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRS--SD 77 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc-chHHHHhCCCCccCCcHHHHHhcCCChHHhHhhc--CC
Confidence 57999999999999999999999999999999999999999 6788889887665567888887766555544433 37
Q ss_pred ceeEeecCCCCCCCCCCc---chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623 130 NFELLCISKPRSKLPLGF---GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA 206 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~ 206 (340)
+++++|++.......... ....+..+++.+. ...||+||||+||+.+.....++..||.+++|+.++..++..+
T Consensus 78 ~l~~ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~---~~~~D~viiD~pp~~~~~~~~~l~~ad~vii~~~~~~~s~~~~ 154 (246)
T TIGR03371 78 GVLFLPFGDLSADEREAYQAHDAGWLARLLQQLD---LAARDWVLIDVPRGPSPITRQALAAADLVLVVVNADAACYATL 154 (246)
T ss_pred CeEEecCCCCcHHHHHHHhhcCHHHHHHHHHhcc---cCCCCEEEEECCCCchHHHHHHHHhCCeEEEEeCCCHHHHHHH
Confidence 899998754321111000 1112223333332 2246999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHhcCC-CceEEEEecccCCcccccccccHHHHHHHhCCce-eEEecCChHHHHHHhcCCceEeeCCCCHHHH
Q 047623 207 D-RVTGLLECDGI-RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLAL-LGVIPEDSEVIRSTNRGYPLVLNKPPTLAGL 283 (340)
Q Consensus 207 ~-~~~~~l~~~~~-~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v-~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~ 283 (340)
. .+.+.++..+. ..+++|+|+++++...... -.+.+++.++.++ .+.||++..+.++...|+|+.++.|+++.++
T Consensus 155 ~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~I~~~~~~~~a~~~g~pv~~~~~~s~~~~ 232 (246)
T TIGR03371 155 HQQALALFAGSGPRIGPHFLINQFDPARQLSRD--VRAVLRQTLGSRLLPFVIHRDEAVSEALARGTPVLNYAPHSQAAH 232 (246)
T ss_pred HHHHHHHhhcccccccceEEeeccCcchhhHHH--HHHHHHHHhcccccCCcccchhhHHHHHHcCCCccccCCcCHHHH
Confidence 8 45455553322 3578999999876432222 2345667778774 4789999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 047623 284 AFEQAAWRLVEQD 296 (340)
Q Consensus 284 ~~~~la~~i~~~~ 296 (340)
+|++++++|+++.
T Consensus 233 ~~~~la~~~l~~~ 245 (246)
T TIGR03371 233 DIRTLAGWLLSKL 245 (246)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 8
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=4.9e-33 Score=251.33 Aligned_cols=255 Identities=20% Similarity=0.247 Sum_probs=185.3
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC----Cccccceecc
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD----CRLDQALVRD 125 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~ 125 (340)
||+|+|. +||||||||+|+|||..||++|+||++||+|+|.++...++|... ..++.+++.+. .++++.+...
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~--~~~~~d~l~~~~~~~~~~~~~i~~~ 77 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLN--QKTVLDTLRSEGDEGVDLDVVMQPG 77 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCC--CCcHHHHHHhcCCCCCCHHHEEEeC
Confidence 4899999 899999999999999999999999999999999666666666543 25788888653 3344444332
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCCC-H-H-HHHHHhcCCeEEEEeCCChh
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGID-A-G-FITAITPANEAVLVTTPDIT 201 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~~-~-~-~~~~l~~ad~viiv~~~~~~ 201 (340)
.++++++|++............... ..+.+.+.. +.++||||||||++... . . ...++.+||.+++|++|+..
T Consensus 78 --~~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~ 154 (273)
T PRK13232 78 --FGDIKCVESGGPEPGVGCAGRGIITSIGLLENLGA-YTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELM 154 (273)
T ss_pred --CCCeEEEeCCCCCCCCCCCCCchhHHHHHHHHccc-ccccCCEEEEecCCCeeECCEeccccccccceEEEecCchHH
Confidence 4789999986543221111011111 123344432 45579999999987653 1 1 12234589999999999999
Q ss_pred hHHHHHHHHHHHHhc---CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCC
Q 047623 202 SLRDADRVTGLLECD---GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPP 278 (340)
Q Consensus 202 s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~ 278 (340)
++.++.++++.++.. +.+..++|+|+.+... .....+++.+.++..+++.||++..+.++...|+|+..+.|+
T Consensus 155 sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~----~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~ 230 (273)
T PRK13232 155 AIYAANNICKGLAKFAKGGARLGGIICNSRNVDG----ERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVIDFDPE 230 (273)
T ss_pred HHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCc----cHHHHHHHHHHhCCCeEEECCCCHHHHHHHHcCCCeEEeCCC
Confidence 999999888888753 4456789999864321 122356788889988999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhc
Q 047623 279 TLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFG 317 (340)
Q Consensus 279 s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (340)
++.+++|.+++++|+++.... .+.+-..+.++.|.+
T Consensus 231 s~~a~~y~~La~el~~~~~~~---~~~~~~~~~~~~~~~ 266 (273)
T PRK13232 231 SNQAKEYLTLAHNVQNNDKLV---VPTPLPMEELEAMMV 266 (273)
T ss_pred ChHHHHHHHHHHHHHhCCCCC---CCCCCCHHHHHHHHH
Confidence 999999999999999885322 123334345555544
No 9
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=100.00 E-value=2.3e-32 Score=247.84 Aligned_cols=248 Identities=21% Similarity=0.264 Sum_probs=186.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhcc-CCcCCCcccHHHhhcC------CCccccceecc
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLL-GLENRVNYTVVEVLNG------DCRLDQALVRD 125 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~-~~~~~~~~~l~~~l~~------~~~~~~~~~~~ 125 (340)
|+|+| ||||||||+|+|||+.||++|+||++||+|+| +++..++ |.. ..++.+++.+ ....++.+...
T Consensus 3 ia~~g-KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ-~n~t~~l~g~~---~~~i~~~~~~~~~~~~~~~~~~~i~~~ 77 (290)
T CHL00072 3 LAVYG-KGGIGKSTTSCNISIALARRGKKVLQIGCDPK-HDSTFTLTGFL---IPTIIDTLQSKDYHYEDVWPEDVIYKG 77 (290)
T ss_pred EEEEC-CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC-CcccccccCcC---CCCHHHHHhhcccccccCChhheEEeC
Confidence 88886 99999999999999999999999999999999 7666554 442 2467777643 23344444332
Q ss_pred cccCceeEeecCCCCCCCCCCc-chhhHHHHHHHHHHhccCCCCEEEEcCCCCCC-HHHHHHHhcCCeEEEEeCCChhhH
Q 047623 126 KRWSNFELLCISKPRSKLPLGF-GGKALTWVVEALKSRQEGSPDFILIDCPAGID-AGFITAITPANEAVLVTTPDITSL 203 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-~~~~~~l~~ad~viiv~~~~~~s~ 203 (340)
.++++++|++.......... .......+++.+.. . ++||||||||++.+. ....+++..||.+++|+.++..++
T Consensus 78 --~~~l~lip~~~~~~~~~~~~~~~~~~~~ll~~l~~-~-~~yD~IiIDt~~~l~~~a~~aal~~AD~viIp~~p~~~sl 153 (290)
T CHL00072 78 --YGGVDCVEAGGPPAGAGCGGYVVGETVKLLKELNA-F-YEYDIILFDVLGDVVCGGFAAPLNYADYCIIITDNGFDAL 153 (290)
T ss_pred --CCCeEEEeCCCCCCccchhhcccHHHHHHHHHhhc-c-ccCCEEEEecCCcceechhhhhhhcCCEEEEEecCCHHHH
Confidence 47999999887764432211 11112234555543 1 369999999988764 334567888999999999999999
Q ss_pred HHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCC
Q 047623 204 RDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPT 279 (340)
Q Consensus 204 ~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s 279 (340)
.++.++++.++.. +....++|+|+++.+. ...++.+.++.+++..||++..+.++...|+|+.++.|++
T Consensus 154 ~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~-------~~~~~~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~s 226 (290)
T CHL00072 154 FAANRIAASVREKARTHPLRLAGLVGNRTSKRD-------LIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFEMVESE 226 (290)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEEeCCCchh-------HHHHHHHHcCCceEEECCCChHHHHHHhCCCceEEeCCCC
Confidence 9999999888753 3457889999987432 2455678889999999999999999999999999999998
Q ss_pred H----HHHHHHHHHHHHHhccccchhhhccCccccchhhhhccc
Q 047623 280 L----AGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLG 319 (340)
Q Consensus 280 ~----~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (340)
+ .+++|.+|+++|+++.+.. .+-....+.|++++.++
T Consensus 227 ~~~~~~a~~y~~La~ell~~~~~~---~~~~~~~~~~~~~~~~~ 267 (290)
T CHL00072 227 PSLNYVCDYYLNIADQLLSQPEGV---VPKEVPDRELFSLLSDF 267 (290)
T ss_pred cchhHHHHHHHHHHHHHHhCCCCc---CCCCCCHHHHHHHHHHh
Confidence 8 5899999999999885432 22344445787777654
No 10
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=1.5e-32 Score=248.57 Aligned_cols=236 Identities=19% Similarity=0.297 Sum_probs=174.7
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC----Ccccccee
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD----CRLDQALV 123 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~ 123 (340)
|+++|+|. +||||||||+|+|||..||+ +|+||++||+|+|......++|... ..++.+++.+. ...++ +.
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~--~~~l~~~l~~~~~~~~~~~~-~~ 76 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKP--QTTMMDTLRELGEEKVTPDK-VI 76 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCC--CCcHHHHHHHhCCCCCCHHH-He
Confidence 56899999 89999999999999999998 5999999999999444444567553 36888888642 12233 22
Q ss_pred cccccCceeEeecCCCCCCCCCCcchhhHH--HHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHh------cCCeEEEE
Q 047623 124 RDKRWSNFELLCISKPRSKLPLGFGGKALT--WVVEALKSRQEGSPDFILIDCPAGIDAGFITAIT------PANEAVLV 195 (340)
Q Consensus 124 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~------~ad~viiv 195 (340)
.+.+++++++|++........ ....... .+.+.+.. +.++||||||||++.. +.+++. +||.+++|
T Consensus 77 -~~~~~~l~~ipa~~~~~~~~~-~~~~~~~~~~l~~~l~~-~~~~yD~iliD~~~~~---~~~al~~~~~~~aad~viIp 150 (275)
T PRK13233 77 -KTGFKDIRCVESGGPEPGVGC-AGRGVITAIDLMEENGA-YTDDLDFVFFDVLGDV---VCGGFAMPIRDGKAQEVYIV 150 (275)
T ss_pred -eeCCCCcEEEECCCCCCCCCC-CCcchhHHHHHHHHcCC-ccCCCCEEEEecCCce---eeccccccchhccCceEEEe
Confidence 234589999998865432111 1111111 13333332 3557999999995533 333343 79999999
Q ss_pred eCCChhhHHHHHHHHHHHH----hcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCc
Q 047623 196 TTPDITSLRDADRVTGLLE----CDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYP 271 (340)
Q Consensus 196 ~~~~~~s~~~~~~~~~~l~----~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~ 271 (340)
+.++..++.++.++++.+. ..+.+..++|+|+..... .....+++.+.++.++++.||++..+.++...|+|
T Consensus 151 ~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~~~----~~~~~e~l~~~~~~~~l~~Ip~~~~v~~A~~~g~p 226 (275)
T PRK13233 151 ASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNVDG----ELELLEEFTDAIGTQMIHFVPRDNIVQKAEFNKKT 226 (275)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCCCc----HHHHHHHHHHHcCCceeeecCcchHHHHHHHcCCC
Confidence 9999999999999877763 335567889999753221 11235678888998888999999999999999999
Q ss_pred eEeeCCCCHHHHHHHHHHHHHHhcccc
Q 047623 272 LVLNKPPTLAGLAFEQAAWRLVEQDSM 298 (340)
Q Consensus 272 v~~~~~~s~~~~~~~~la~~i~~~~~~ 298 (340)
+.++.|+++++++|.+++++++++.+.
T Consensus 227 v~~~~~~s~~a~~y~~La~ell~~~~~ 253 (275)
T PRK13233 227 VVEFDPDCNQAKEYKELARKIIENKDF 253 (275)
T ss_pred EEEECCCCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998654
No 11
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=100.00 E-value=1.6e-32 Score=247.55 Aligned_cols=250 Identities=23% Similarity=0.311 Sum_probs=189.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhc------CCCccccceecc
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLN------GDCRLDQALVRD 125 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~------~~~~~~~~~~~~ 125 (340)
+|+|. +||||||||+|+|||.+||++|+||++||+|+| ++++..++.. ...++.+++. ++..+++.+..
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q-~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~~~~~i~~- 76 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK-HDSTFTLTGR--LIPTVIDVLQAVNYHYEDVRPEDVIYT- 76 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc-ccccceecCC--CCCcHHHHHHhccccccCCCHHHeeEe-
Confidence 58888 799999999999999999999999999999999 7777777532 3468888884 33455555543
Q ss_pred cccCceeEeecCCCCCCCCCCc-chhhHHHHHHHHHHhccCCCCEEEEcCCCCCC-HHHHHHHhcCCeEEEEeCCChhhH
Q 047623 126 KRWSNFELLCISKPRSKLPLGF-GGKALTWVVEALKSRQEGSPDFILIDCPAGID-AGFITAITPANEAVLVTTPDITSL 203 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-~~~~~~l~~ad~viiv~~~~~~s~ 203 (340)
..++++++|++.......... .......+++.+ .+.++||||||||++.+. .....++..||.+++|+.++..++
T Consensus 77 -~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~yD~ViID~~~~~~~~~~~~~l~aAD~vlip~~~~~~sl 153 (268)
T TIGR01281 77 -GYGGVDCVEAGGPPAGSGCGGYVVGETVKLLKEH--HILDDYDVILFDVLGDVVCGGFATPLQYADYALVVAANDFDAL 153 (268)
T ss_pred -CCCCeEEEecCCCCCCCcccceehhhhHHHhhhc--cccccCCEEEEecCCccccCccccchhhcCEEEEEecCchhHH
Confidence 348999999887653322111 111111222222 124579999999988663 334456889999999999999999
Q ss_pred HHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCC
Q 047623 204 RDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPT 279 (340)
Q Consensus 204 ~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s 279 (340)
.++.++++.+.+. +.+..++|+|+++.+. ..+++.+.++.++++.||++..+.++...|.|+.++.|++
T Consensus 154 ~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~~-------~~~~~~~~~~~~vl~~I~~~~~v~~A~~~G~pV~~~~~~~ 226 (268)
T TIGR01281 154 FAANRIAASVQEKAKNYDVRLAGIIGNRSDATD-------LIERFNERVGMPVLGVVPDLEVIRRSRVKGKTLFEMEESG 226 (268)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEeCCChHH-------HHHHHHHHcCCCEEEEcCCChHHHHHHHCCCCHHHhCccc
Confidence 9999988877643 4566789999997651 2456777889999999999999999999999999988765
Q ss_pred ----HHHHHHHHHHHHHHhccccchhhhccCccccchhhhhccc
Q 047623 280 ----LAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLG 319 (340)
Q Consensus 280 ----~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (340)
..++.|++++++++++.+. ..+.+.-+++.|-|+++|
T Consensus 227 ~~~~~~a~~~~~la~el~~~~~~---~~~~~~~~~~~~~~~~~~ 267 (268)
T TIGR01281 227 PELAAVTQEYLRMAEYLLAGPEG---VVPTPLIDREIFELLGGF 267 (268)
T ss_pred ccchHHHHHHHHHHHHHHhcCCC---CCCCCCCHHHHHHHhhcc
Confidence 3678999999999987543 456777888999888875
No 12
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=2.8e-32 Score=246.59 Aligned_cols=257 Identities=19% Similarity=0.249 Sum_probs=179.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC---Cccccceeccc
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD---CRLDQALVRDK 126 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~ 126 (340)
|++|+|. +||||||||+|+|||+.||++|+|||+||+|+|..+...+++.. ...++.+++.+. ...++.+ .+
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~--~~~~~~~~l~~~~~~~~~~~i~--~~ 75 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGL--AQKTVLDTLREEGEDVELEDIR--KE 75 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCC--CCccHHHHHHhcCCCCCHHHHh--hc
Confidence 4799999 69999999999999999999999999999999944444444433 246788888752 3333322 23
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhHH-HHHHHHHHh-ccCCCCEEEEcCCCCCC--H-HHHHHHhcCCeEEEEeCCChh
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKALT-WVVEALKSR-QEGSPDFILIDCPAGID--A-GFITAITPANEAVLVTTPDIT 201 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~-~~~~~D~VIiD~~~~~~--~-~~~~~l~~ad~viiv~~~~~~ 201 (340)
..++++++|++..............+. .+++.+... ..++||||||||++... . ....++.+||.+++|++++..
T Consensus 76 ~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~ 155 (274)
T PRK13235 76 GYGGTRCTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMM 155 (274)
T ss_pred CCCCCEEEeCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccCCcccccccccccEEEEEecCchh
Confidence 358899998774433211100011111 344444321 13579999999977542 1 112233489999999999999
Q ss_pred hHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCC
Q 047623 202 SLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP 277 (340)
Q Consensus 202 s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~ 277 (340)
++.++.++++.++.. +....++|+|+...+. .....+++.+.++.++++.||++..+.++...|+|+..+.|
T Consensus 156 sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~~~----~~e~~~~l~~~~~~~ll~~Ip~~~~v~~A~~~g~pv~~~~p 231 (274)
T PRK13235 156 AMYAANNICKGILKYADAGGVRLGGLICNSRKVDN----EREMIEELARKIGTQMIHFVPRDNFVQRAEINRKTVIEYDP 231 (274)
T ss_pred HHHHHHHHHHHHHHHhhcCCCceeEEEEecCCCCc----hHHHHHHHHHHcCCceEEeCCCCHHHHHHHhcCCcEEEECC
Confidence 999999888877542 3445679999643221 11235577788888888999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623 278 PTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL 318 (340)
Q Consensus 278 ~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (340)
+++++++|.+|+++|.++.... .+.+-....++.++..
T Consensus 232 ~s~~a~~y~~La~el~~~~~~~---~~~~~~~~~~~~~~~~ 269 (274)
T PRK13235 232 THPQADEYRALARKIDENEMFV---IPKPLEIEELESLLIE 269 (274)
T ss_pred CCHHHHHHHHHHHHHHhcCCCC---CCCCCCHHHHHHHHHH
Confidence 9999999999999998874221 2233344455555544
No 13
>PRK13236 nitrogenase reductase; Reviewed
Probab=100.00 E-value=2.4e-32 Score=248.82 Aligned_cols=260 Identities=18% Similarity=0.271 Sum_probs=188.4
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC-----CCcccc
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG-----DCRLDQ 120 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~-----~~~~~~ 120 (340)
...++++|+| ++||||||||+|+|||..||++|+||++||+|++.++...+++.... .++.+++.+ ...+++
T Consensus 2 ~~~~~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~--~tl~d~~~~~~~~~~~~l~~ 78 (296)
T PRK13236 2 TDENIRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQ--TTVLHLAAERGAVEDLELHE 78 (296)
T ss_pred CCcCceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCC--CCHHHHHHhcCCccCCCHHH
Confidence 3466799999 67999999999999999999999999999999998888878776543 588888753 345555
Q ss_pred ceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHH-hccCCCCEEEEcCCCCCCH-HHHH--HHhcCCeEEEEe
Q 047623 121 ALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKS-RQEGSPDFILIDCPAGIDA-GFIT--AITPANEAVLVT 196 (340)
Q Consensus 121 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~D~VIiD~~~~~~~-~~~~--~l~~ad~viiv~ 196 (340)
.+. +..+|++++|++........ .....+. .++.+.. .+.++||||+|||++.... .... .+.+||.+|+|+
T Consensus 79 ~i~--~~~~gv~llpa~~~~~~~~~-~~~~~~~-~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvt 154 (296)
T PRK13236 79 VML--TGFRGVKCVESGGPEPGVGC-AGRGIIT-AINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVT 154 (296)
T ss_pred hhe--eCCCCeEEEECCCCCCCCCC-cceeehh-hhHHHHhcCccccCCEEEEeccccceeccccccchhccCCEEEEec
Confidence 544 23479999998754332211 1111221 2333431 1235799999999754321 1111 146899999999
Q ss_pred CCChhhHHHHHHHHHHHH----hcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCce
Q 047623 197 TPDITSLRDADRVTGLLE----CDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPL 272 (340)
Q Consensus 197 ~~~~~s~~~~~~~~~~l~----~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v 272 (340)
+|+..++.++.++.+.+. ..+.+..++|+||.+... .....+++++.++..++++||++..+.++...|+|+
T Consensus 155 tpe~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~~----~~~ile~l~~~~g~~vl~~Ip~~~~v~eA~~~~~Pv 230 (296)
T PRK13236 155 SGEMMAMYAANNIARGILKYAHTGGVRLGGLICNSRNVDR----EIELIETLAKRLNTQMIHFVPRDNIVQHAELRRMTV 230 (296)
T ss_pred CcchHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCCcc----hHHHHHHHHHHhCccceeeCCCChHHHHHHHcCCCh
Confidence 999999988876555442 335577899999853221 112357888889988899999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhccc
Q 047623 273 VLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLG 319 (340)
Q Consensus 273 ~~~~~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (340)
..+.|+++++++|.+++++++++.+..++ -+-..+.+|.++++|
T Consensus 231 ~~~~p~s~~a~~y~~La~ell~~~~~~~p---~~~~~~~~~~~~~~~ 274 (296)
T PRK13236 231 NEYAPDSNQGNEYRALAKKIINNDNLTIP---TPIEMEELEELLIEF 274 (296)
T ss_pred hhcCCCCHHHHHHHHHHHHHHhcCCCCCC---CCCCHHHHHHHHHHh
Confidence 99999999999999999999998765433 334555666665543
No 14
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=1.3e-32 Score=247.42 Aligned_cols=254 Identities=19% Similarity=0.220 Sum_probs=181.3
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchh-ccCCcCCCcccHHHhhcCCC--ccccceeccc
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDL-LLGLENRVNYTVVEVLNGDC--RLDQALVRDK 126 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~-~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~ 126 (340)
|++|+|. +||||||||+|+|||..|++.| ||++||+|+| +++.. +++.. ..++.+++.+.. ..+..+. +
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~ 73 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPK-ADTTRTLCGKR---IPTVLDTLKDNRKPELEDIIH--E 73 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccC-cccchhhhcCC---ccHHHHHHhhcCCCChhHhhe--e
Confidence 6899999 6999999999999999999999 9999999999 55544 44432 246777776543 3334333 2
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCCC--HHH-HHHHhcCCeEEEEeCCChhh
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGID--AGF-ITAITPANEAVLVTTPDITS 202 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~-~~~l~~ad~viiv~~~~~~s 202 (340)
.+++++++|++............... ..+.+.+.+ +.++||||||||++... ... ...+..||.+++|++|+..+
T Consensus 74 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~s 152 (264)
T PRK13231 74 GFNGILCVESGGPEPGVGCAGRGVIVAMNLLENLGV-FDEDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMS 152 (264)
T ss_pred CCCCeEEEEcCCCCCCCCCcCceeeehhhhHHhhcc-ccCCCCEEEEecCCCceEccccccccccccceeEEEecCchhH
Confidence 35889999876543211110011001 123444433 35579999999987542 111 11125899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHH
Q 047623 203 LRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAG 282 (340)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~ 282 (340)
+.++.++++.++..+....+++.|+.+... ......++.+.++.++++.||++..+.++...|.|+.++.|+++++
T Consensus 153 i~~~~~~~~~i~~~~~~~~~vv~~~~~~~~----~~~~~~~l~~~~~~~vl~~I~~~~~v~~a~~~g~~v~~~~~~~~aa 228 (264)
T PRK13231 153 LYAANNIARGIKKLKGKLGGIICNCRGIDN----EVEIVSEFASRIGSRIIGVIPRSNLVQESELDAKTVVETFPESEQA 228 (264)
T ss_pred HHHHHHHHHHHHHcCCcceEEEEcCCCCcc----HHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHcCCceeEeCCCChHH
Confidence 999999999988765555677877765332 2233667778889888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchhhhccCccccchhhhh
Q 047623 283 LAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFF 316 (340)
Q Consensus 283 ~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~ 316 (340)
++|.+++++|+++.+.+.+.+....+-.+||++|
T Consensus 229 ~~~~~la~el~~~~~~~~~~~~~~~~~~~~~~~~ 262 (264)
T PRK13231 229 SVYRKLANNIMNNTEFSTPEPMDDEEFEEFFKSF 262 (264)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHh
Confidence 9999999999999866433333344444555544
No 15
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=100.00 E-value=3.8e-32 Score=245.93 Aligned_cols=258 Identities=21% Similarity=0.291 Sum_probs=184.4
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC----Cccccceeccc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD----CRLDQALVRDK 126 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~ 126 (340)
++|+|. +||||||||+|+|||..|+++|++|++||+|+|.+....+++.. ...++.+++.+. ..+++.+. +
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~i~--~ 75 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGK--AQPTVLDVLREKGAEDLELEDVIK--E 75 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCC--CCCCHHHHHhhcCCCCCCHHHeee--e
Confidence 478998 59999999999999999999999999999999944444444433 347888888754 45555553 2
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCCCH--H-HHHHHhcCCeEEEEeCCChhh
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGIDA--G-FITAITPANEAVLVTTPDITS 202 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~-~~~~l~~ad~viiv~~~~~~s 202 (340)
.+++++++|++............... ..+++.+.. +.++||||||||++.... . ....+..||.+++|++++..+
T Consensus 76 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~s 154 (275)
T TIGR01287 76 GFGGIRCVESGGPEPGVGCAGRGVITAINLLEELGA-YEDDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMA 154 (275)
T ss_pred CCCCEEEEeCCCCCccCCCccchhhhHHHHHHHhhh-hhccCCEEEEeccCcceecceeeccccccccEEEEEecchHHH
Confidence 45799999987554321110000100 123444433 345799999999775421 1 122335799999999999999
Q ss_pred HHHHHHHHHHHHh----cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCC
Q 047623 203 LRDADRVTGLLEC----DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPP 278 (340)
Q Consensus 203 ~~~~~~~~~~l~~----~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~ 278 (340)
+.++.++++.+.. .+....++|.|+..... .....+++.+.++.++++.||++..+.++...|+|+.++.|+
T Consensus 155 l~~~~~l~~~i~~~~~~~~~~~~giv~n~~~~~~----~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~ 230 (275)
T TIGR01287 155 LYAANNICKGILKYAKSGGVRLGGLICNSRNVDD----EKELIDEFAKKLGTQLIHFVPRSNIVQKAEIRKMTVIEYDPE 230 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCCeeeEEEEcCCCCch----HHHHHHHHHHHhCCceEEECCCChHHHHHHHcCCceEEeCCC
Confidence 9999888776543 23445567777643221 222256777888888889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623 279 TLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL 318 (340)
Q Consensus 279 s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (340)
++++++|++++++|+++.+...+.+-....-.+++..|+-
T Consensus 231 s~~a~~~~~la~ell~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (275)
T TIGR01287 231 SEQANEYRELAKKIYENTEFVIPTPLTMDELEEILMKFGI 270 (275)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999876655555555666677776653
No 16
>PRK10037 cell division protein; Provisional
Probab=100.00 E-value=2e-32 Score=244.16 Aligned_cols=232 Identities=21% Similarity=0.173 Sum_probs=171.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
|++|+|.|.||||||||+|+|||..|+++|+||++||+|+| ++++.+||.......++.+.+.+...+.+.+.+. .+
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q-~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD-NLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRY--TS 77 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh-hhHHHHhCCCccccchHHHHHhcCCCchhhhccc--cC
Confidence 57999999999999999999999999999999999999999 7888888876543456777666555555555443 37
Q ss_pred ceeEeecCCCCCCCCCCcch---hhHHHHHHHHHHhcc--CCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHH
Q 047623 130 NFELLCISKPRSKLPLGFGG---KALTWVVEALKSRQE--GSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLR 204 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~--~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~ 204 (340)
+++++|++. .......... .....+.+.+.+ ++ ++||||||||||+.+.....++..||.+++|+.++..+.
T Consensus 78 ~l~iip~~~-~~~~~~~~~~~~~~~~~~l~~~l~~-l~~~~~yD~iiIDtpp~~~~~~~~al~aaD~vlvpv~~~~~~~- 154 (250)
T PRK10037 78 QLDLLPFGQ-LSIEEQENPQHWQTRLGDICSALQQ-LKASGRYQWILLDLPRGASPLTRQLLSLCDHSLAIVNVDANCH- 154 (250)
T ss_pred CeEEEcCCC-CCHHHHHHHHHHHHhHHHHHHHHHH-hcccCCCCEEEEECCCCccHHHHHHHHhCCEEEEEcCcCHHHH-
Confidence 899999852 1111100000 011123344443 33 579999999999999999999999999999999986652
Q ss_pred HHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHh---CCcee-EEecCChHHHHHHhcCCceEeeCCCCH
Q 047623 205 DADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEML---GLALL-GVIPEDSEVIRSTNRGYPLVLNKPPTL 280 (340)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~---g~~v~-~~Ip~d~~~~~a~~~g~~v~~~~~~s~ 280 (340)
++..+......+.+++|+++... . ..+++.+.+ +.+++ ..||++..+.++...|+|++++.|+++
T Consensus 155 -----i~~~~~~~~~~~~i~~n~~~~~~----~--~~~~~~~~~~~~~~~~l~~~I~~~~~~~~a~~~g~~v~~~~~~s~ 223 (250)
T PRK10037 155 -----IRLHQQALPAGAHILINDLRIGS----Q--LQDDLYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPLGEYRSDSL 223 (250)
T ss_pred -----HhhhccccCCCeEEEEecCCccc----H--HHHHHHHHHHHhcccccCccccCchhHHHHHhcCCcchhcCCcCH
Confidence 33333322245678889987432 1 122333333 55566 579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc
Q 047623 281 AGLAFEQAAWRLVEQDSM 298 (340)
Q Consensus 281 ~~~~~~~la~~i~~~~~~ 298 (340)
++++|+++++++++..+.
T Consensus 224 aa~~~~~l~~el~~~~~~ 241 (250)
T PRK10037 224 AAEEILTLANWCLLHYSG 241 (250)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999998754
No 17
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-32 Score=244.69 Aligned_cols=251 Identities=22% Similarity=0.309 Sum_probs=186.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC------CCccccce
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG------DCRLDQAL 122 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~------~~~~~~~~ 122 (340)
|+++|+|. +||||||||+|+|||.+||++|+||++||+||| ++++.+++.. ...++.+++.+ ...+++.+
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq-~~~t~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~i 76 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK-HDSTFTLTGK--LVPTVIDILEEVDFHSEELRPEDFV 76 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC-cchhhhhcCC--CCCcHHHHHHhccccccCCCHHHhe
Confidence 57999998 699999999999999999999999999999999 8887777643 24678888843 33445554
Q ss_pred ecccccCceeEeecCCCCCCCCCCc-chhhHHHHHHHHHHhccCCCCEEEEcCCCCCC-HHHHHHHhcCCeEEEEeCCCh
Q 047623 123 VRDKRWSNFELLCISKPRSKLPLGF-GGKALTWVVEALKSRQEGSPDFILIDCPAGID-AGFITAITPANEAVLVTTPDI 200 (340)
Q Consensus 123 ~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-~~~~~~l~~ad~viiv~~~~~ 200 (340)
.. .++|++++|++.......... .......+++.+ .+.++||||||||++... ....+++..||.+|+|+.++.
T Consensus 77 ~~--~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~yD~viIDt~g~~~~~~~~~~l~~AD~viip~~~~~ 152 (270)
T PRK13185 77 YE--GYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEH--HLLDDYDVILFDVLGDVVCGGFAAPLQYADYALIVTANDF 152 (270)
T ss_pred ee--CCCCcEEEECCCCCCCCCccchhHHHHHHHHHhc--CccccCCEEEEecCCCcccCcccchhhhCcEEEEEecCch
Confidence 42 358999999887653322111 011111223222 134579999999987663 334566889999999999999
Q ss_pred hhHHHHHHHHHHHHh----cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeC
Q 047623 201 TSLRDADRVTGLLEC----DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNK 276 (340)
Q Consensus 201 ~s~~~~~~~~~~l~~----~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~ 276 (340)
.++.++.++++.++. .+.+..++|+|+++.. ...+++.+.++.++++.||++..+.++...|.|+.++.
T Consensus 153 ~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~~-------~~~~~~~~~~g~~vl~~Ip~~~~i~~A~~~G~pv~~~~ 225 (270)
T PRK13185 153 DSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAGT-------DLIDKFNEAVGLKVLAHVPDLDAIRRSRLKGKTLFEME 225 (270)
T ss_pred hhHHHHHHHHHHHHhhhhccCCCceEEEEeccChH-------HHHHHHHHHcCCCEEEECCCCcccChHHHcCCcHhhhC
Confidence 999999998888763 2345678999997632 12467778889999999999999999999999999998
Q ss_pred CCC----HHHHHHHHHHHHHHhccccchhhhccCccccchhhhhc
Q 047623 277 PPT----LAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFG 317 (340)
Q Consensus 277 ~~s----~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (340)
|++ +++++|++++++++++...- .+.+.+.+..|..++
T Consensus 226 ~~~~~~~~aa~~~~~la~el~~~~~~~---~~~~~~~~~~~~~~~ 267 (270)
T PRK13185 226 ETDPGLEEVQNEYLRLAEQLLAGPEPL---VPKPLKDREIFELLG 267 (270)
T ss_pred cCCccchHHHHHHHHHHHHHHhcCCCC---CCCCCCHHHHHHhhc
Confidence 864 48899999999999876432 234445555555543
No 18
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=100.00 E-value=7.8e-32 Score=243.31 Aligned_cols=240 Identities=23% Similarity=0.294 Sum_probs=174.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCC----ccccceecc
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC----RLDQALVRD 125 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~ 125 (340)
|++|+|. +||||||||+|+|||..|+++|+||++||+|+| +++...++.. ....++.+++.+.. .+++.+..
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq-~n~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~- 76 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK-ADSTRLLLGG-KAIPTVLDTLREKGEVELELEDVIFE- 76 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC-CCchhhhcCC-CCCCcHHHHHHhhcccccchhhheee-
Confidence 5789999 699999999999999999999999999999999 6555444322 22467888876422 44454433
Q ss_pred cccCceeEeecCCCCCCCCCCcchh-hHHHHHHHHHHhccCCCCEEEEcCCCCCC--HH-HHHHHhcCCeEEEEeCCChh
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGK-ALTWVVEALKSRQEGSPDFILIDCPAGID--AG-FITAITPANEAVLVTTPDIT 201 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~-~~~~l~~ad~viiv~~~~~~ 201 (340)
..++++++|++............. ....+++.+. .+.++||||||||++... .. ....+..||.+++|+.|+..
T Consensus 77 -~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~ 154 (270)
T cd02040 77 -GFGGIKCVESGGPEPGVGCAGRGVITAINLLEELG-AYEDDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMM 154 (270)
T ss_pred -cCCCeEEEeCCCCCCCCCCcCcchhhHHHHHHhcC-ccccCCCEEEEecccCcccCCcccccccccccEEEEEecCchH
Confidence 358899999887654332211111 0112233332 245579999999987542 11 12223479999999999999
Q ss_pred hHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCC
Q 047623 202 SLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP 277 (340)
Q Consensus 202 s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~ 277 (340)
++.++.++++.+... +.+..++|.|+..... .....+++++.++.++++.||++..+.++...|+|+.++.|
T Consensus 155 sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~~~----~~~~~~~l~~~~g~~vl~~Ip~~~~v~~A~~~g~pv~~~~p 230 (270)
T cd02040 155 ALYAANNICKGILKYAKSGGVRLGGLICNSRNTDR----EDELIDAFAKRLGTQMIHFVPRDNVVQRAELRGKTVIEYDP 230 (270)
T ss_pred HHHHHHHHHHHHHHhCccCCCceEEEEEecCCChh----HHHHHHHHHHHcCCCeEeecCCcHHHHHHHHcCCceEEecC
Confidence 999998888777543 3455667778743321 12235677788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhccccc
Q 047623 278 PTLAGLAFEQAAWRLVEQDSMK 299 (340)
Q Consensus 278 ~s~~~~~~~~la~~i~~~~~~~ 299 (340)
+++++++|.+++++++++.+..
T Consensus 231 ~~~aa~~~~~La~el~~~~~~~ 252 (270)
T cd02040 231 ESKQADEYRELARKIVENKLLV 252 (270)
T ss_pred CCHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999987664
No 19
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=1.8e-31 Score=248.96 Aligned_cols=243 Identities=23% Similarity=0.291 Sum_probs=174.1
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD 125 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 125 (340)
..+++++|+|+|+||||||||+|+|||..||+.|+||++||+|++.+++..+||.++..... .....+.......
T Consensus 103 ~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~-----~~~~~i~p~~~~g 177 (369)
T PRK11670 103 VNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTS-----PDGTHMAPIMAHG 177 (369)
T ss_pred CCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcc-----cCCceeeeeeccC
Confidence 44678999999999999999999999999999999999999999988888889875421100 0000111000000
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH--HHHHhcCCeEEEEeCCChhhH
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF--ITAITPANEAVLVTTPDITSL 203 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~--~~~l~~ad~viiv~~~~~~s~ 203 (340)
.....+.++... . .............+.+.+.+.++++||||||||||+.++.. ...+..+|.+++|++|+..++
T Consensus 178 ~~~~~~~~l~~~-~--~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s~ 254 (369)
T PRK11670 178 LATNSIGYLVTD-D--NAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIAL 254 (369)
T ss_pred cccccHHHhcCc-C--cceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhHH
Confidence 000000011000 0 00000111112234444434445579999999999987743 445667999999999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCcccc---ccc---ccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCC
Q 047623 204 RDADRVTGLLECDGIRDIKMVVNRVRTDMIKG---EDM---MSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP 277 (340)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~---~~~---~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~ 277 (340)
..+.+.++.+...+.+.+++|+|++....... ... ...+++++.++.++++.||.+..+.++...|+|+..++|
T Consensus 255 ~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~ll~~IP~~~~I~ea~~~G~Pv~~~~p 334 (369)
T PRK11670 255 IDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDRGTPTVVSRP 334 (369)
T ss_pred HHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcEEEEeCCChHHHHHHHCCCcEEEeCC
Confidence 99999999888888899999999986543211 110 136788899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcc
Q 047623 278 PTLAGLAFEQAAWRLVEQD 296 (340)
Q Consensus 278 ~s~~~~~~~~la~~i~~~~ 296 (340)
+++.+++|.+++++++.+.
T Consensus 335 ~s~~a~~y~~LA~el~~~~ 353 (369)
T PRK11670 335 ESEFTAIYRQLADRVAAQL 353 (369)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998885
No 20
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=100.00 E-value=4.2e-32 Score=244.62 Aligned_cols=249 Identities=22% Similarity=0.280 Sum_probs=188.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhc------CCCccccceecc
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLN------GDCRLDQALVRD 125 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~------~~~~~~~~~~~~ 125 (340)
+|+|.| ||||||||+|+|||+.||++|+||++||+|+| ++++..++.. ...++.+++. +....++.+.
T Consensus 2 ~i~v~g-KGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq-~~~~~~l~~~--~~~~l~~~~~~~~~~~~~~~~~~~i~-- 75 (267)
T cd02032 2 VLAVYG-KGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK-HDSTFTLTGF--LIPTVIDILEEVDFHYEELWPEDVIY-- 75 (267)
T ss_pred EEEEec-CCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC-CCcceeccCC--CCCCHHHHHHhccccccCCChhheEE--
Confidence 688885 99999999999999999999999999999999 7777777643 2467888874 3445555554
Q ss_pred cccCceeEeecCCCCCCCCCCcc-hhhHHHHHHHHHHhccCCCCEEEEcCCCCCC-HHHHHHHhcCCeEEEEeCCChhhH
Q 047623 126 KRWSNFELLCISKPRSKLPLGFG-GKALTWVVEALKSRQEGSPDFILIDCPAGID-AGFITAITPANEAVLVTTPDITSL 203 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-~~~~~~l~~ad~viiv~~~~~~s~ 203 (340)
+.+++++++|++........... ......+++.+. +.++||||||||++... .....++..||.+++|+.++..++
T Consensus 76 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~yD~vIIDt~g~~~~~~~~~al~~aD~vlip~~p~~~~l 153 (267)
T cd02032 76 EGYGGVDCVEAGGPPAGAGCGGYVVGETVKLLKELN--LFEEYDVILFDVLGDVVCGGFAAPLNYADYALIVTDNDFDSI 153 (267)
T ss_pred ECCCCcEEEEcCCCCCCccccchHHHHHHHHHHHcc--ccccCCEEEEeCCCCcccccchhhhhhcCEEEEEecCCcccH
Confidence 24589999998865433221111 111122333321 34579999999988765 335667899999999999999999
Q ss_pred HHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCC
Q 047623 204 RDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPT 279 (340)
Q Consensus 204 ~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s 279 (340)
..+.++++.++.. +.+..++|+|+++.+. ..+++.+.++.++++.||++..+.++...|.|+.++.+++
T Consensus 154 ~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~~-------~i~~~~~~~~~~vl~~Ip~~~~v~~A~~~G~~v~e~~~~~ 226 (267)
T cd02032 154 FAANRIAAAVREKAKTYKVRLAGLIANRTDKTD-------LIDKFVEAVGMPVLAVLPLIEDIRRSRVKGKTLFEMDESD 226 (267)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEEeCCCHHH-------HHHHHHHhCCCCEEEEecCCccccHHHHcCCCHHHhCccc
Confidence 9999988877642 4456789999987532 2456677789999999999999999999999999998877
Q ss_pred HH----HHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623 280 LA----GLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL 318 (340)
Q Consensus 280 ~~----~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (340)
+. +++|.+|+++++++.+.. .+.+...+..|..+++
T Consensus 227 ~~a~e~a~~y~~La~~il~~~~~~---~~~~~~~~~~~~~~~~ 266 (267)
T cd02032 227 EELAYRCDYYLLIADQLLAGPEGV---VPEPLGDREIFDLLGG 266 (267)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCC---CCCCCCHHHHHHHhcc
Confidence 64 688999999999876543 3466777788877765
No 21
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=6.7e-32 Score=244.71 Aligned_cols=258 Identities=19% Similarity=0.180 Sum_probs=185.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC----CCccccceecc
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG----DCRLDQALVRD 125 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~ 125 (340)
|++|+|. +||||||||+|+|||..||++|+||++||+|+| ++++.+++... ..++.+++.+ ...+++.+..
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq-~n~t~~l~~~~--~~~l~d~~~~~~~~~~~~~~~i~~- 75 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK-ADCTRNLVGEK--IPTVLDVLREKGIDNLGLEDIIYE- 75 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc-ccccccccCcc--CCCHHHHHHhcCCCCCCHHHheee-
Confidence 5789999 699999999999999999999999999999999 77666665433 3688898854 3455666553
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhH--HHHHHHHHHhccCCCCEEEEcCCCCCC--H-HHHHHHhcCCeEEEEeCCCh
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKAL--TWVVEALKSRQEGSPDFILIDCPAGID--A-GFITAITPANEAVLVTTPDI 200 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~D~VIiD~~~~~~--~-~~~~~l~~ad~viiv~~~~~ 200 (340)
.+++++++|++........ ...... ..+.+.+......+||||||||++... . ....++..||.+++|+.|+.
T Consensus 76 -~~~~l~lipa~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~ 153 (279)
T PRK13230 76 -GFNGIYCVESGGPEPGYGC-AGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDP 153 (279)
T ss_pred -CCCCcEEEECCCCCCCCCc-CCcchhhHHHHHHHcCcccccCCCEEEEecCCccccCCccccccccccceEEEeccchH
Confidence 3589999998865432111 000100 112222222112369999999977542 1 22334567999999999999
Q ss_pred hhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeC
Q 047623 201 TSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNK 276 (340)
Q Consensus 201 ~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~ 276 (340)
.++.++.++++.+... +....+++.| .+.... . ....+++++.++.++++.||++..+.++...|+|+..+.
T Consensus 154 ~si~~~~~ll~~i~~~~~~~~~~i~gIv~n-~r~~~~-~--~~~~e~l~~~~g~~vl~~Ip~~~~v~eA~~~g~pv~~~~ 229 (279)
T PRK13230 154 MAIYAANNICKGIKRFAKRGKSALGGIIYN-GRSVID-A--PDIVEEFAKKIGTNVIGKIPMSNIITEAEIYGKTVIEYA 229 (279)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcceEEEEe-ccCCCc-h--hHHHHHHHHHhCCcEEEECCCChHHHHHHHcCCeEEEeC
Confidence 9999999888777543 3334455544 322211 1 123567788899998999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623 277 PPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL 318 (340)
Q Consensus 277 ~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (340)
|++++++.|.+++++++++.+...+-+.+..+-+-|..+++.
T Consensus 230 p~~~~a~~y~~La~ell~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (279)
T PRK13230 230 PDSEISNIFRELAEAIYENNTGTIPNPLEEEEIDQIGEKIKE 271 (279)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999877655555566666666666543
No 22
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=100.00 E-value=5.5e-32 Score=234.98 Aligned_cols=236 Identities=28% Similarity=0.320 Sum_probs=188.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
|++|+|.|.||||||||+|+|||+.|++.|++|++||+||+ ..+...||+......++.....+.....+..++.. +
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpq-N~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~--~ 77 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQ-NLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYS--D 77 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcH-HHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccC--C
Confidence 68999999999999999999999999999999999999999 99999999987666777755555556666656554 8
Q ss_pred ceeEeecCCCCCCCCCCc--chhhHHHHHHHHHHhc-cCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623 130 NFELLCISKPRSKLPLGF--GGKALTWVVEALKSRQ-EGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA 206 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~-~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~ 206 (340)
+++++|.+.........+ -......+.+.+.++. ...||+||||+|++.+..+..++..||.+++|+.++..|...+
T Consensus 78 g~~~LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~al~~aD~vL~V~~~Da~s~~~L 157 (243)
T PF06564_consen 78 GVDFLPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSPYTRQALAAADLVLVVVNPDAASHARL 157 (243)
T ss_pred CCEEEcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHHHHhCCeEEEEeCCCHHHHHHH
Confidence 999999886543322111 1112234455555543 4679999999999999999999999999999999999987655
Q ss_pred HHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHH
Q 047623 207 DRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFE 286 (340)
Q Consensus 207 ~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~ 286 (340)
.+. .-.....+++|++++......+.. +-.++.++..+.+.|.+|+.+.|+...+.|+.++.|.|.+++++.
T Consensus 158 ~q~------~l~~~~~~liNq~~~~s~l~~D~~--~~~~~~l~~llp~~IHrDeAv~EAlA~~~~v~~yaP~S~Aa~D~~ 229 (243)
T PF06564_consen 158 HQR------ALPAGHRFLINQYDPASQLQRDLL--QVWRQSLGRLLPGVIHRDEAVAEALASGQPVGEYAPHSQAAEDIQ 229 (243)
T ss_pred HHh------cccCCcEEEEeccCccchHHHHHH--HHHHHhhccccceeeecchHHHHHHhcCCCccccCccCHHHHHHH
Confidence 431 112356899999999886666653 334566676666899999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 047623 287 QAAWRLVEQD 296 (340)
Q Consensus 287 ~la~~i~~~~ 296 (340)
.||.+++.+.
T Consensus 230 ~LA~W~l~~~ 239 (243)
T PF06564_consen 230 TLANWCLSHL 239 (243)
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 23
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=6.3e-32 Score=245.99 Aligned_cols=259 Identities=18% Similarity=0.242 Sum_probs=187.2
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC-----CCcccccee
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG-----DCRLDQALV 123 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~-----~~~~~~~~~ 123 (340)
++++|+|. +||||||||+++|||..|++.|+|||+||+|+|.++...+++... ..++.+++.+ ...+++.+.
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~ 79 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKA--QDTVLSLAAEAGSVEDLELEDVMK 79 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCC--CCcHHHHHHhcCCcccccHHHHhe
Confidence 46899997 999999999999999999999999999999999666655554433 3577888743 334444443
Q ss_pred cccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh-ccCCCCEEEEcCCCCCC-HHHHHHH--hcCCeEEEEeCCC
Q 047623 124 RDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSR-QEGSPDFILIDCPAGID-AGFITAI--TPANEAVLVTTPD 199 (340)
Q Consensus 124 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~D~VIiD~~~~~~-~~~~~~l--~~ad~viiv~~~~ 199 (340)
+..+|++++|++.........-....+. .+.+.+. +.++||||||||++... ......+ .+||.+|+|+.++
T Consensus 80 --~~~~gl~lipa~~~~~~~~~~~~~~~l~--~~~l~~~~~~~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe 155 (295)
T PRK13234 80 --IGYKGIKCVESGGPEPGVGCAGRGVITS--INFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGE 155 (295)
T ss_pred --ecCCCeEEEECCCCCCCCCCCcceeeeH--HHHHHHcCCCccCCEEEEEcCCCceECCCccccccccCceEEEecCcc
Confidence 3347999999875443211000011111 0123321 23579999999965432 1222222 3899999999999
Q ss_pred hhhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEee
Q 047623 200 ITSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLN 275 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~ 275 (340)
..++.++.++++.+.+. +.+..++|+|+.+... +....+++.+.++.++++.||++..+.++...|+|+..+
T Consensus 156 ~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~~----~~~~~e~l~e~~g~~ll~~Ip~d~~V~eA~~~g~pv~~~ 231 (295)
T PRK13234 156 MMALYAANNIAKGILKYANSGGVRLGGLICNERQTDR----ELELAEALAARLGSKLIHFVPRDNIVQHAELRRMTVIEY 231 (295)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCch----HHHHHHHHHHHhCCceEEECCCchHHHHHHHcCCceEEE
Confidence 99999999998888653 3567889999655432 222356777888988889999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhccce
Q 047623 276 KPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLGV 320 (340)
Q Consensus 276 ~~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (340)
.|+++.+++|.+++++++++.+.. .++.+-....++.++++|-
T Consensus 232 ~p~s~aa~~y~~La~ell~~~g~~--~~p~~~~~~~~~~~~~~~~ 274 (295)
T PRK13234 232 APDSKQAGEYRALAEKIHANSGKG--TIPTPITMEELEDMLMDFG 274 (295)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCC--cCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999986531 2234455567888887764
No 24
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.7e-31 Score=227.67 Aligned_cols=248 Identities=31% Similarity=0.401 Sum_probs=194.2
Q ss_pred CCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCcccccee
Q 047623 44 ELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALV 123 (340)
Q Consensus 44 ~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 123 (340)
+...+...+|+|.|+||||||||+|+|||..||..|++|.++|.|...+++.+++|.+.+..+ +....+.. +.
T Consensus 41 ~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~------~~~~g~~P-v~ 113 (300)
T KOG3022|consen 41 ENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVH------QSDNGWIP-VV 113 (300)
T ss_pred ccccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceee------ecCCCcee-ee
Confidence 345677899999999999999999999999999999999999999999999999999876411 11111111 12
Q ss_pred cccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhc---CCeEEEEeCCCh
Q 047623 124 RDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITP---ANEAVLVTTPDI 200 (340)
Q Consensus 124 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~---ad~viiv~~~~~ 200 (340)
.+..+..+.+-..............+.....+.+.+++.-..+.||+||||||+.++....+... +|..++|++|..
T Consensus 114 ~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~ 193 (300)
T KOG3022|consen 114 VNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQE 193 (300)
T ss_pred ecCCeEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchh
Confidence 22222222222222332333334556666777778888777889999999999998877776544 466999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCceEEEEecccCCcc---ccccccc---HHHHHHHhCCceeEEecCChHHHHHHhcCCceEe
Q 047623 201 TSLRDADRVTGLLECDGIRDIKMVVNRVRTDMI---KGEDMMS---VLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVL 274 (340)
Q Consensus 201 ~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~---~~~~~~~---~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~ 274 (340)
.++..+.+-+++++..+++.+++|-||..-... ....... .+++.+.+|+++++.||-|+.+.++.+.|.|+.+
T Consensus 194 vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~ 273 (300)
T KOG3022|consen 194 VALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVE 273 (300)
T ss_pred hhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCeEeecCCCHHHHHhccCCCeeEe
Confidence 999999999999999999999999999653321 1112223 3788899999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHhcccc
Q 047623 275 NKPPTLAGLAFEQAAWRLVEQDSM 298 (340)
Q Consensus 275 ~~~~s~~~~~~~~la~~i~~~~~~ 298 (340)
.+|.|+++.+|.+++++|.+....
T Consensus 274 ~~p~s~~~~af~~i~~~i~~~~~~ 297 (300)
T KOG3022|consen 274 EYPDSPASEAFEDIAEKLVEQLSS 297 (300)
T ss_pred cCCCchHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998743
No 25
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=100.00 E-value=9.8e-31 Score=241.69 Aligned_cols=231 Identities=25% Similarity=0.329 Sum_probs=183.9
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceec-
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVR- 124 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~- 124 (340)
..+++++|+|+|+|||+||||+|+|||..++++|++|++||+|++++++..+||.+..++..+.++......++.....
T Consensus 89 ~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~ 168 (322)
T TIGR03815 89 PPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRD 168 (322)
T ss_pred CCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHH
Confidence 3457899999999999999999999999999999999999999998889999998876555555554333322211100
Q ss_pred -ccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhH
Q 047623 125 -DKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSL 203 (340)
Q Consensus 125 -~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~ 203 (340)
....+++++++++.... .......+..+++.+++ .|||||||+|+..+.....++..||.+++|+.++..++
T Consensus 169 ~~~~~~~l~vl~~~~~~~---~~~~~~~l~~~l~~l~~----~~D~VIID~p~~~~~~~~~~L~~AD~vliV~~~~~~sl 241 (322)
T TIGR03815 169 ALPRRGGLSVLSWGRAVG---AALPPAAVRAVLDAARR----GGDLVVVDLPRRLTPAAETALESADLVLVVVPADVRAV 241 (322)
T ss_pred hCCCcCCeEEEecCCCCc---CCCCHHHHHHHHHHHHh----cCCEEEEeCCCCCCHHHHHHHHHCCEEEEEcCCcHHHH
Confidence 11137899998876542 22455667777777766 79999999999999888999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHH
Q 047623 204 RDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGL 283 (340)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~ 283 (340)
..+.++++.+...+ ..+.+|+|+..+.. ...+++++.+|.++++.||+++.+.++.++|+++. ..+++++++
T Consensus 242 ~~a~r~l~~l~~~~-~~~~lVv~~~~~~~------~~~~~i~~~lg~~v~~~Ip~d~~v~~a~~~G~~~~-~~~~~~~~~ 313 (322)
T TIGR03815 242 AAAARVCPELGRRN-PDLRLVVRGPAPAG------LDPEEIAESLGLPLLGEVRDQRGLARALERGGLPA-ASRRRPLGR 313 (322)
T ss_pred HHHHHHHHHHhhhC-CCeEEEEeCCCCCC------CCHHHHHHHhCCCceeeCCCChhHHHHHhCCCCcC-CCCCCHHHH
Confidence 99999999988654 35678888754322 24678899999999999999999999999999888 777888888
Q ss_pred HHHHHHHH
Q 047623 284 AFEQAAWR 291 (340)
Q Consensus 284 ~~~~la~~ 291 (340)
.+..+..+
T Consensus 314 ~~~~~l~~ 321 (322)
T TIGR03815 314 AAAEVLDV 321 (322)
T ss_pred HHHHHHhh
Confidence 88877643
No 26
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.97 E-value=4.3e-31 Score=249.64 Aligned_cols=236 Identities=20% Similarity=0.258 Sum_probs=173.7
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCC----CcccHHHhhc---CCCcccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR----VNYTVVEVLN---GDCRLDQ 120 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~----~~~~l~~~l~---~~~~~~~ 120 (340)
..+++|+|.|.||||||||+|+|||..||++|+|||+||+|+| ++++.+||..++ ...++.+++. +...+++
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ-~~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~ 197 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ-ASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRD 197 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC-CCHHHHcCCCccccccccccHHHHHhccccCCCHHH
Confidence 4679999999999999999999999999999999999999999 899999987643 2345666653 2334444
Q ss_pred ceecccccCceeEeecCCCCCCCCCCc--------chh--hHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCC
Q 047623 121 ALVRDKRWSNFELLCISKPRSKLPLGF--------GGK--ALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPAN 190 (340)
Q Consensus 121 ~~~~~~~~~~l~~l~~~~~~~~~~~~~--------~~~--~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad 190 (340)
.+ ..+.+++++++|++.......... ... .+..+.+.+.+ +.++||||||||||+++..+.+++.+||
T Consensus 198 ~i-~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~-~~~~yD~IiIDtpP~l~~~t~~al~aAd 275 (405)
T PRK13869 198 VI-RPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDE-VADDYDVVVIDCPPQLGFLTLSGLCAAT 275 (405)
T ss_pred he-eccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH-hhccCCEEEEECCCchhHHHHHHHHHcC
Confidence 43 344568999999886543221110 000 11223333333 3457999999999999999999999999
Q ss_pred eEEEEeCCChhhHHHHHHHHHHH-------Hhc--C--CCceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecC
Q 047623 191 EAVLVTTPDITSLRDADRVTGLL-------ECD--G--IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPE 258 (340)
Q Consensus 191 ~viiv~~~~~~s~~~~~~~~~~l-------~~~--~--~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~ 258 (340)
.+|+|+.++..++.++.++++.+ ... + ...+++++|+++++...+.. -...+.+.++-.++ ..|+.
T Consensus 276 ~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~~~~~~--~~~~l~~~~~~~vl~~~I~~ 353 (405)
T PRK13869 276 SMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTK--VAALLRNMFEDHVLTNPMVK 353 (405)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCCcHHHH--HHHHHHHHhhhhhccCcCcc
Confidence 99999999999999988887632 222 2 23568999999876433222 25567777887666 68999
Q ss_pred ChHHHHHHhcCCceEeeCCCCHHHHHHHHH
Q 047623 259 DSEVIRSTNRGYPLVLNKPPTLAGLAFEQA 288 (340)
Q Consensus 259 d~~~~~a~~~g~~v~~~~~~s~~~~~~~~l 288 (340)
+..+.++...|+|++++.|.+..++.|.+.
T Consensus 354 s~ai~~a~~~~~tv~e~~~~~~~~~~y~ra 383 (405)
T PRK13869 354 SAAVSDAGLTKQTLYEIGRENLTRSTYDRA 383 (405)
T ss_pred hHHHHhhHhcCCChhhcCCCcCCHHHHHHH
Confidence 999999999999999998875444444333
No 27
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.4e-30 Score=233.64 Aligned_cols=245 Identities=22% Similarity=0.302 Sum_probs=183.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCcc-ccceeccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRL-DQALVRDK 126 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 126 (340)
++++|+|.|.||||||||+|+|||.+|| .+|+||++||+||| ++++.+++.+........+++...... +......
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ-~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQ-GSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTV- 78 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCc-chhhHhcCCCcccchhHHHHHhcccccccchhccc-
Confidence 5799999999999999999999999999 55799999999999 999999988765223444444433222 2222222
Q ss_pred ccCceeEeecCCCCCC-CCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHH
Q 047623 127 RWSNFELLCISKPRSK-LPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRD 205 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~ 205 (340)
..++++++|+...... .............++.+.+...++||||||||||+.+..+.+++.+||.+++|+.++..++.+
T Consensus 79 ~~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~yD~iiID~pp~l~~l~~nal~asd~vlIP~~~~~~~~~~ 158 (259)
T COG1192 79 VIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVKDDYDYIIIDTPPSLGVLTLNALAAADHVLIPVQPEFLDLEG 158 (259)
T ss_pred CCCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhhccCCCEEEECCCCchhHHHHHHHHHcCeeEEecCchHHHHHH
Confidence 3488999988766542 000010111222333333334558999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC------CCceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecCChHHHHHHhcCCceEeeCCC
Q 047623 206 ADRVTGLLECDG------IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSEVIRSTNRGYPLVLNKPP 278 (340)
Q Consensus 206 ~~~~~~~l~~~~------~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~~~~a~~~g~~v~~~~~~ 278 (340)
+..+++.+.... ....++++|++........ .....+.+.++.+++ ..||.+..+.++...|.++..+.++
T Consensus 159 ~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~g~~~~~~~~~ 236 (259)
T COG1192 159 LEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLAD--EVLQELKQLLGDPVLKTKIPRRVAYREAAAEGKPLYEYDPK 236 (259)
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcchHH--HHHHHHHHHhccccccccCcccccHHhHHHcCCCceecCCc
Confidence 998887776431 1457789999987653222 234555666665544 7899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhccc
Q 047623 279 TLAGLAFEQAAWRLVEQDS 297 (340)
Q Consensus 279 s~~~~~~~~la~~i~~~~~ 297 (340)
++.+.+|.+++++++++..
T Consensus 237 ~~~~~~~~~~~~e~~~~~~ 255 (259)
T COG1192 237 SKAAEEYYELAKELLEELL 255 (259)
T ss_pred chHHHHHHHHHHHHHHhhh
Confidence 9999999999999998864
No 28
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.97 E-value=3.7e-30 Score=243.24 Aligned_cols=238 Identities=21% Similarity=0.279 Sum_probs=171.3
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCC----CcccHHHhhc---CCCccc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR----VNYTVVEVLN---GDCRLD 119 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~----~~~~l~~~l~---~~~~~~ 119 (340)
++.+++|+|+|.||||||||+|+|||..|+++|+||++||+|+| ++++.++|..+. ...++.+++. +...+.
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ-~~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQ-ASLSALFGYQPEFDVGENETLYGAIRYDDERRPLS 179 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCC-CCHHHHcCCCcccccccCccHHHHHhccccccCHH
Confidence 46679999999999999999999999999999999999999999 889999987543 2345666653 233444
Q ss_pred cceecccccCceeEeecCCCCCCCCCCc----------chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcC
Q 047623 120 QALVRDKRWSNFELLCISKPRSKLPLGF----------GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPA 189 (340)
Q Consensus 120 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~----------~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~a 189 (340)
+.+.. +.+++++++|++.......... ....+..+.+.+.+ +.++||||||||||+++..+.+++.+|
T Consensus 180 ~~i~~-~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~~yD~IiiD~pp~~~~~~~~al~aa 257 (387)
T TIGR03453 180 EIIRK-TYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAE-VEDDYDVVVIDCPPQLGFLTLSALCAA 257 (387)
T ss_pred hhccc-CCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH-HHhcCCEEEEeCCccHhHHHHHHHHHc
Confidence 44332 3458999999875432111000 00001123333322 344899999999999999999999999
Q ss_pred CeEEEEeCCChhhHHHHHHHHHH-------HHhcC----CCceEEEEecccCCcccccccccHHHHHHHhCCcee-EEec
Q 047623 190 NEAVLVTTPDITSLRDADRVTGL-------LECDG----IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIP 257 (340)
Q Consensus 190 d~viiv~~~~~~s~~~~~~~~~~-------l~~~~----~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip 257 (340)
|.+|+|+.++..++..+..+.+. ++..+ ...+++++|+++.+...... ....+.+.++..++ ..|+
T Consensus 258 d~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~--~~~~l~~~~~~~vl~~~I~ 335 (387)
T TIGR03453 258 TGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPNDGPQAQ--MVAFLRSLFGDHVLTNPML 335 (387)
T ss_pred CeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCCccHHH--HHHHHHHHhcccccccccc
Confidence 99999999988888777655443 33322 34678999999876422222 24556777887777 6899
Q ss_pred CChHHHHHHhcCCceEeeCCCCHHHHHHHHHH
Q 047623 258 EDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAA 289 (340)
Q Consensus 258 ~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~la 289 (340)
++..+.++...|.|++++.|++..++.|.+..
T Consensus 336 ~~~~~~~a~~~g~~V~e~~~~~~~~~~~~~a~ 367 (387)
T TIGR03453 336 KSTAISDAGLTKQTLYEVERSQFTRSTYDRAM 367 (387)
T ss_pred ccHHHHhhhhcCCCcEEECCCCCCHHHHHHHH
Confidence 99999999999999999998764444454443
No 29
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.97 E-value=6.2e-30 Score=239.78 Aligned_cols=230 Identities=17% Similarity=0.222 Sum_probs=168.5
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec-CCCCCCchhccCCcCC----CcccHHHhhcCCCccccc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA-DVGLRNLDLLLGLENR----VNYTVVEVLNGDCRLDQA 121 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~-D~~~~~l~~~~~~~~~----~~~~l~~~l~~~~~~~~~ 121 (340)
.+.+++|+|.|.||||||||+|+|||+.||++|+|||+||+ |+| ++++.+||..++ ...++.+++.+.......
T Consensus 103 ~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ-~nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~ 181 (387)
T PHA02519 103 DKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQ-GTASMYHGYVPDLHIHADDTLLPFYLGERDNAEY 181 (387)
T ss_pred CCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCC-CCcccccCcCccccccccccHHHHHhCCCcchHh
Confidence 45579999999999999999999999999999999999996 999 888888887542 234666776654432233
Q ss_pred eecccccCceeEeecCCCCCCCCCCc---------chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeE
Q 047623 122 LVRDKRWSNFELLCISKPRSKLPLGF---------GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEA 192 (340)
Q Consensus 122 ~~~~~~~~~l~~l~~~~~~~~~~~~~---------~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~v 192 (340)
+...+.+++++++|++.........+ .......+.+.+.. +.++||||||||||+++..+.+++.+||.|
T Consensus 182 ~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~-l~~~YD~IlID~pPslg~lt~nAL~AAd~v 260 (387)
T PHA02519 182 AIKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIES-VWDNYDIIVIDSAPNLGTGTINVVCAADVI 260 (387)
T ss_pred heecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHH-hhccCCEEEEECCCCccHHHHHHHHHhCEE
Confidence 34445679999999976432211100 00111223333332 345899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHh-------cC-CCceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecCChHHH
Q 047623 193 VLVTTPDITSLRDADRVTGLLEC-------DG-IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSEVI 263 (340)
Q Consensus 193 iiv~~~~~~s~~~~~~~~~~l~~-------~~-~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~~~ 263 (340)
|+|+.++..++.++.++++.+.. .+ ...+.+++|+++++... ....-...+.+.+|..++ ..|+.+..+.
T Consensus 261 liPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~-~~~~i~~~l~~~~g~~vl~~~I~~s~~i~ 339 (387)
T PHA02519 261 VVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTVGN-QSRWMEEQIRNTWGSMVLRQVVRVTDEVG 339 (387)
T ss_pred EEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCCch-HHHHHHHHHHHHhccccccccCcCcchHh
Confidence 99999999999888776655532 12 23567999999876311 111123567788887777 6799999999
Q ss_pred HHHhcCCceEeeCCCC
Q 047623 264 RSTNRGYPLVLNKPPT 279 (340)
Q Consensus 264 ~a~~~g~~v~~~~~~s 279 (340)
++...++++++..+.+
T Consensus 340 ~a~~~~~ti~e~~~~~ 355 (387)
T PHA02519 340 KGQIKMRTVFEQAANQ 355 (387)
T ss_pred hchhcCCChhhCcccc
Confidence 9999999999987655
No 30
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.97 E-value=6.1e-30 Score=240.36 Aligned_cols=230 Identities=17% Similarity=0.233 Sum_probs=167.4
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec-CCCCCCchhccCCcCC----CcccHHHhhcCCCc-cc
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA-DVGLRNLDLLLGLENR----VNYTVVEVLNGDCR-LD 119 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~-D~~~~~l~~~~~~~~~----~~~~l~~~l~~~~~-~~ 119 (340)
.+.++++|+|.|.||||||||+|+|||..||++|+|||+||+ |+| ++++.++|..++ ...++.+++.+... ..
T Consensus 102 ~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ-~nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~ 180 (388)
T PRK13705 102 EDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQ-GTASMYHGWVPDLHIHAEDTLLPFYLGEKDDAT 180 (388)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCC-CchhhhcCcCccccccccccHHHHHhcCCCchh
Confidence 456689999999999999999999999999999999999996 999 888888887532 23456666654432 33
Q ss_pred cceecccccCceeEeecCCCCCCCCCCc---------chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCC
Q 047623 120 QALVRDKRWSNFELLCISKPRSKLPLGF---------GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPAN 190 (340)
Q Consensus 120 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~---------~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad 190 (340)
.. ...+.+++++++|++.........+ .......+-+.+. .+.++||||||||||+++..+.+++.+||
T Consensus 181 ~~-i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~-~l~~~YD~IiIDtpP~l~~~t~nal~AaD 258 (388)
T PRK13705 181 YA-IKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIE-TVAHDYDVIVIDSAPNLGIGTINVVCAAD 258 (388)
T ss_pred hh-eecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHH-hhhccCCEEEEECCCchhHHHHHHHHHcC
Confidence 33 3344568999999875432211100 0001112222232 23458999999999999999999999999
Q ss_pred eEEEEeCCChhhHHHHHHHHHHHHhc-------C-CCceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecCChH
Q 047623 191 EAVLVTTPDITSLRDADRVTGLLECD-------G-IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSE 261 (340)
Q Consensus 191 ~viiv~~~~~~s~~~~~~~~~~l~~~-------~-~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~ 261 (340)
.+|+|+.++..++.++.++++.+... + ...+.+++|+++++.... ...-...+.+.++..++ ..||++..
T Consensus 259 ~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~~-~~~~~~~l~~~~~~~vl~~~I~~s~~ 337 (388)
T PRK13705 259 VLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGSQ-SPWMEEQIRDAWGSMVLKNVVRETDE 337 (388)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCCchH-HHHHHHHHHHHhccccccccCcccch
Confidence 99999999999999888777666531 1 235678999998753111 11123567778887777 68999999
Q ss_pred HHHHHhcCCceEeeCCCC
Q 047623 262 VIRSTNRGYPLVLNKPPT 279 (340)
Q Consensus 262 ~~~a~~~g~~v~~~~~~s 279 (340)
+.++...+++++++.+.+
T Consensus 338 i~~a~~~~~ti~e~~~~~ 355 (388)
T PRK13705 338 VGKGQIRMRTVFEQAIDQ 355 (388)
T ss_pred HhhhhhcCCCceeEcccc
Confidence 999999999999987533
No 31
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.97 E-value=9.1e-30 Score=215.57 Aligned_cols=179 Identities=69% Similarity=1.064 Sum_probs=149.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCce
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNF 131 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 131 (340)
+|+|+|+|||+||||+|+|||..++++|++|++||+|++.+++..+++.+.....++.+++
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~------------------- 61 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVL------------------- 61 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcc-------------------
Confidence 5899999999999999999999999999999999999987888777665432111111100
Q ss_pred eEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHH
Q 047623 132 ELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTG 211 (340)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~ 211 (340)
. -||||||+||+.+.....++..||.+++|+.++..++..+.++++
T Consensus 62 -----------------------------~-----~d~viiD~p~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~ 107 (179)
T cd02036 62 -----------------------------A-----GDYILIDSPAGIERGFITAIAPADEALLVTTPEISSLRDADRVKG 107 (179)
T ss_pred -----------------------------c-----CCEEEEECCCCCcHHHHHHHHhCCcEEEEeCCCcchHHHHHHHHH
Confidence 0 099999999999888888999999999999999999999999999
Q ss_pred HHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHH
Q 047623 212 LLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF 285 (340)
Q Consensus 212 ~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~ 285 (340)
.++..+....++|+|+++++...... ..+++++.++.++++.||++..+.++..+|+++.++.|+++++++|
T Consensus 108 ~~~~~~~~~~~iv~N~~~~~~~~~~~--~~~~~~~~~~~~v~~~Ip~~~~~~~a~~~G~~v~~~~~~~~~~~~~ 179 (179)
T cd02036 108 LLEALGIKVVGVIVNRVRPDMVEGGD--MVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAAQAY 179 (179)
T ss_pred HHHHcCCceEEEEEeCCcccccchhh--HHHHHHHHhCCCEEEEecCCHHHHHHHhcCCceEecCCCChhhhcC
Confidence 99887778899999999876532222 1467788899999999999999999999999999999999877653
No 32
>PHA02518 ParA-like protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=220.54 Aligned_cols=203 Identities=16% Similarity=0.189 Sum_probs=153.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN 130 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 130 (340)
++|+|.|.|||+||||+|+|||.+|+++|++|++||+|+| +++..+++......
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q-~~~~~~~~~~~~~~------------------------- 54 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQ-GSSTDWAEAREEGE------------------------- 54 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC-CChHHHHHhcccCC-------------------------
Confidence 5899999999999999999999999999999999999999 55555543221100
Q ss_pred eeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHH
Q 047623 131 FELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVT 210 (340)
Q Consensus 131 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~ 210 (340)
.+++... . ...+...+..+. ..||||||||||+.+.....++..||.||+|+.|+..++..+.++.
T Consensus 55 -~~i~~~~--------~-~~~~~~~l~~~~----~~~d~viiD~p~~~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~ 120 (211)
T PHA02518 55 -PLIPVVR--------M-GKSIRADLPKVA----SGYDYVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLV 120 (211)
T ss_pred -CCCchhh--------c-cHHHHHHHHHHh----ccCCEEEEeCCCCccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHH
Confidence 0111100 0 112333334443 3799999999999999999999999999999999999999998888
Q ss_pred HHHHhc-----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEE-ecCChHHHHHHhcCCceEeeCCCCHHHHH
Q 047623 211 GLLECD-----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGV-IPEDSEVIRSTNRGYPLVLNKPPTLAGLA 284 (340)
Q Consensus 211 ~~l~~~-----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~-Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~ 284 (340)
+.++.. +.+..+++.|++.+...... ...+..+.++.+++.. ++++..+.++...|+++.++.++++++++
T Consensus 121 ~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~---~~~~~l~~~~~~~~~~~i~~~~~~~~a~~~g~~v~~~~~~~~a~~~ 197 (211)
T PHA02518 121 ELIKARQEVTDGLPKFAFIISRAIKNTQLYR---EARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLELPEDDKAAEE 197 (211)
T ss_pred HHHHHHHhhCCCCceEEEEEeccCCcchHHH---HHHHHHHHcCchhhhchhhhHHHHHHHHhcCCceEecCCCchHHHH
Confidence 877642 34567788898865432221 2333444457777755 55556788999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 047623 285 FEQAAWRLVEQD 296 (340)
Q Consensus 285 ~~~la~~i~~~~ 296 (340)
|.+++++++++.
T Consensus 198 ~~~l~~ei~~~~ 209 (211)
T PHA02518 198 IIQLVKELFRGI 209 (211)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 33
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.96 E-value=7.1e-28 Score=209.65 Aligned_cols=199 Identities=25% Similarity=0.353 Sum_probs=143.5
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhc-----CCCccccceecc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLN-----GDCRLDQALVRD 125 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~-----~~~~~~~~~~~~ 125 (340)
++|+|+| ||||||||+++|||.+||++|+||++||+|+|......+++.+. ..++.+++. +...+++.+.+
T Consensus 1 ~~iav~g-KGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~- 76 (212)
T cd02117 1 RQIAIYG-KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKA--PTTILELAAEDGHVEDLELEDVIFE- 76 (212)
T ss_pred CEEEEEC-CCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCC--CCCHHHHHhhhCCcCCcChhHeeEe-
Confidence 4799996 99999999999999999999999999999999544445555443 367888776 34455554443
Q ss_pred cccCceeEeecCCCCCCCCCCcchh-hHHHHHHHHHHhccCCCCEEEEcCCCCCC-HHHHHHHh--cCCeEEEEeCCChh
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGK-ALTWVVEALKSRQEGSPDFILIDCPAGID-AGFITAIT--PANEAVLVTTPDIT 201 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-~~~~~~l~--~ad~viiv~~~~~~ 201 (340)
.+++++++|++............. ....+++.+.. +.++||||||||++... ......+. .||.+++|++++..
T Consensus 77 -~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~ 154 (212)
T cd02117 77 -GFGGVKCVESGGPEPGVGCAGRGVITAVNLLEKEGF-AEDDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFM 154 (212)
T ss_pred -CCCCcEEEeCCCCCCCcccCCcchhhHHHHHHhccc-cccCCCEEEEecCCCceecccccccccccCcEEEEEecccHH
Confidence 458999999987664433211110 11122332222 35589999999976552 12223344 89999999999999
Q ss_pred hHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCC
Q 047623 202 SLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPED 259 (340)
Q Consensus 202 s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d 259 (340)
++.++.++.+.++.. +....++|+|+++.+. .....+++++.++.++++.||+|
T Consensus 155 sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~----~~~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 155 ALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDR----ETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCcc----HHHHHHHHHHHcCCCEEEecCCC
Confidence 999999888888764 4456789999998762 22346788899999999999986
No 34
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.96 E-value=1.2e-27 Score=207.40 Aligned_cols=194 Identities=21% Similarity=0.220 Sum_probs=150.3
Q ss_pred CCCCCChhhHHHHHhhCCC----CCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCCCCchhcc
Q 047623 24 LKPFSSKSSIQSVLQWNRK----PELAGETPRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGLRNLDLLL 98 (340)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~----~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~ 98 (340)
-.|.+...+-.+.++.+.. .....+.+++|+|+|+|||+||||+|+|||..|++ .|++|++||+|++.++++.++
T Consensus 5 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~ 84 (207)
T TIGR03018 5 NSPRSRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTL 84 (207)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhhee
Confidence 3455555554444444432 22355678999999999999999999999999997 699999999999988999999
Q ss_pred CCcCCCcccHHHhhcCCC-ccccceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCC--CEEEEcCC
Q 047623 99 GLENRVNYTVVEVLNGDC-RLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSP--DFILIDCP 175 (340)
Q Consensus 99 ~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--D~VIiD~~ 175 (340)
+.+.. .++.+++.+.. .+++.+.+. ..++++++|++..............+..+++.+++ +| ||||||+|
T Consensus 85 ~~~~~--~~l~~~l~~~~~~l~~~i~~~-~~~~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~~----~y~~D~IiiD~p 157 (207)
T TIGR03018 85 GLEAE--PGLSDCLLDPVLDLADVLVPT-NIGRLSLLPAGRRHPNPTELLASQRMRSLLHELAR----RYPDRIIIIDTP 157 (207)
T ss_pred CCCCC--CCHHHHHcCCCCCHHHHhccC-CCCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh----hCCCCEEEEECC
Confidence 88764 67889887766 666655543 34789999988775443222344556677777766 57 99999999
Q ss_pred CCCCH-HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEe
Q 047623 176 AGIDA-GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVN 226 (340)
Q Consensus 176 ~~~~~-~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN 226 (340)
|.... ....++..||.+|+|+.++..+.+.+.+.++.++ +.+.+|+|+|
T Consensus 158 p~~~~~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 158 PLLVFSEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CCcchhHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 98864 4445567899999999999999999999999998 5678999998
No 35
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.96 E-value=1.6e-27 Score=215.63 Aligned_cols=200 Identities=19% Similarity=0.253 Sum_probs=163.4
Q ss_pred CCCCCCCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCC
Q 047623 21 IKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGL 100 (340)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~ 100 (340)
....+|.+...+..+.++.+.......+..++|+|+|+|||+||||+|+|||..+|+.|++|++||+|++.+.++.+++.
T Consensus 74 ~~~~~~~~~~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~ 153 (274)
T TIGR03029 74 IAAYQPFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKL 153 (274)
T ss_pred ccccCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCC
Confidence 45567777777878888888776666788899999999999999999999999999999999999999998998988887
Q ss_pred cCCCcccHHHhhcCCCccccceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC-
Q 047623 101 ENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID- 179 (340)
Q Consensus 101 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~- 179 (340)
+.. .++.+++.+....+ .+......++++++|++.........+....+..+++.+++ .|||||||+||...
T Consensus 154 ~~~--~gl~~~l~~~~~~~-~i~~~~~~~~l~~lp~g~~~~~~~~~~~~~~~~~~l~~l~~----~yD~ViiD~pp~~~~ 226 (274)
T TIGR03029 154 SEQ--RGLSDILAGRSDLE-VITHIPALENLSVLPAGAIPPNPQELLARPAFTDLLNKVMG----DYDVVIVDTPSAEHS 226 (274)
T ss_pred CCC--CCHHHHhCCCCCHH-HeeecCCCCCEEEEeCcCCCCCHHHHhCcHHHHHHHHHHHh----cCCEEEEeCCCcccc
Confidence 654 78999998875443 33333345899999998765443323344566677777766 79999999999764
Q ss_pred HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEec
Q 047623 180 AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNR 227 (340)
Q Consensus 180 ~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~ 227 (340)
.........+|.+++|+.++..+...+.+.++.++..+.+.+|+|+|+
T Consensus 227 ~d~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 227 SDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred cHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 334445678999999999999999999999999999999999999995
No 36
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.95 E-value=2.3e-26 Score=209.07 Aligned_cols=234 Identities=24% Similarity=0.316 Sum_probs=155.8
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCC------ccccceec
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC------RLDQALVR 124 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~ 124 (340)
++|+|. +|||+||||+|+|||..||++|+||++||+|++.++...+++... ..++.+++.+.. .+++....
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~--~~~l~dv~~~~~~~~~~~~~~~vi~~ 77 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGIS--LPTIIEVATEKKLAGEEVKVGDVCFK 77 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCC--CCCHHHHHHhhccccCCCCHHHheee
Confidence 589999 899999999999999999999999999999999777777766433 267888876432 23333322
Q ss_pred ccccCceeEe--ecCCCCCCCCCCcchhhH---HHHHHHHHHhccCCCCEEEEcCCCCC---CHHHHHHHhcCCeEEEEe
Q 047623 125 DKRWSNFELL--CISKPRSKLPLGFGGKAL---TWVVEALKSRQEGSPDFILIDCPAGI---DAGFITAITPANEAVLVT 196 (340)
Q Consensus 125 ~~~~~~l~~l--~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~D~VIiD~~~~~---~~~~~~~l~~ad~viiv~ 196 (340)
. ..++.... ............+..... ...++.+.. +.++||||||||++.. +.....++..||.+++|+
T Consensus 78 ~-~~~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~-~~~~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt 155 (296)
T TIGR02016 78 T-TIMNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGF-HDWDFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIG 155 (296)
T ss_pred c-cccCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhh-hcccCCEEEEecCCCccccccccchhhhhCCeEEEEe
Confidence 1 11211100 000000000000111111 233333331 2247999999997654 122333456799999999
Q ss_pred CCChhhHHHHHHHHHHHH---hcC--CCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCc
Q 047623 197 TPDITSLRDADRVTGLLE---CDG--IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYP 271 (340)
Q Consensus 197 ~~~~~s~~~~~~~~~~l~---~~~--~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~ 271 (340)
.++..++.++.++.+.++ +.+ .+.+++|+|++..+. ..+++++.++.++++.||+++.+.++. .+.+
T Consensus 156 ~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~-------~~~~~~~~~~i~vLg~IP~d~~i~~~~-~~~~ 227 (296)
T TIGR02016 156 SNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSG-------EAQAFAREVGIPVLAAIPADEELRRKS-LAYQ 227 (296)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCcc-------HHHHHHHHcCCCeEEECCCCHHHHHHh-cCCC
Confidence 999999987766666554 443 568999999986532 246778899999999999999998744 3334
Q ss_pred eEeeCCCCHHHHHHHHHHHHHHhccc
Q 047623 272 LVLNKPPTLAGLAFEQAAWRLVEQDS 297 (340)
Q Consensus 272 v~~~~~~s~~~~~~~~la~~i~~~~~ 297 (340)
.....+.+..++.|.+|+++|.++..
T Consensus 228 ~~~~~~~~~~~~~f~~la~~i~~~~~ 253 (296)
T TIGR02016 228 IVGSHATPRFGKLFEELAGNVADAPP 253 (296)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHhcC
Confidence 44444455689999999999998754
No 37
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.95 E-value=3.8e-27 Score=203.95 Aligned_cols=179 Identities=23% Similarity=0.312 Sum_probs=144.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
+.+|+|+|+|+|||+||||+|.|||..+++.|++|++||+|++.+.+..+++.+.. ..++.+++.+...+++.+... .
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~-~~~l~~~l~~~~~l~~~i~~~-~ 92 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNK-ITGLTNFLSGTTDLSDAICDT-N 92 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCC-CCCHHHHhcCCCCHHHhcccC-C
Confidence 44899999999999999999999999999999999999999998888888887652 368889998888777766543 2
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH-HHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA-GFITAITPANEAVLVTTPDITSLRDA 206 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~-~~~~~l~~ad~viiv~~~~~~s~~~~ 206 (340)
.++++++|++..............+..+++.+++ +|||||||+||.... ........+|.+++|+.++..+...+
T Consensus 93 ~~~l~~l~~g~~~~~~~~~l~~~~l~~~l~~l~~----~yD~ViiD~pp~~~~~~~~~~~~~~D~vilV~~~~~~~~~~~ 168 (204)
T TIGR01007 93 IENLFVITSGPVPPNPTELLQSSNFKTLIETLRK----YFDYIIIDTPPIGTVTDAAIIARACDASILVTDAGEIKKRDV 168 (204)
T ss_pred CCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh----cCCEEEEeCCCccccchHHHHHHhCCeEEEEEECCCCCHHHH
Confidence 3899999987754332222344556666776665 799999999994322 22334467999999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEEecccCCc
Q 047623 207 DRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 207 ~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
.+.++.+++.+.+.+++|+|+++...
T Consensus 169 ~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 169 QKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred HHHHHHHHhCCCCEEEEEEeCccccc
Confidence 99999999989999999999998764
No 38
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.95 E-value=6.2e-26 Score=207.13 Aligned_cols=251 Identities=23% Similarity=0.312 Sum_probs=173.8
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC------Cccc
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD------CRLD 119 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~------~~~~ 119 (340)
..+..++|+|+ +|||+||||+++|||.+|+++|++|++||+|++++++..+||.... .++.+..... ..++
T Consensus 27 ~~~~~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~--~~i~d~~~~~~l~~~~~~~~ 103 (329)
T cd02033 27 PTKKTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKAC--PTIIETSAKKKLAGEEVQIG 103 (329)
T ss_pred CCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCC--CcccccccccccCcccceee
Confidence 44677999999 5999999999999999999999999999999998899999987654 2333332221 1112
Q ss_pred cceecccccCceeEeecCCCCCCCCCCcchhh---HHHHHHHHHHhccCCCCEEEEcCCCCCC--H-HHHHHHhcCCeEE
Q 047623 120 QALVRDKRWSNFELLCISKPRSKLPLGFGGKA---LTWVVEALKSRQEGSPDFILIDCPAGID--A-GFITAITPANEAV 193 (340)
Q Consensus 120 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~-~~~~~l~~ad~vi 193 (340)
+.... ..++.++..+.+... ..+.... ...+++.+.. ..+.|||||||++++.. . ....+...+|.++
T Consensus 104 dv~~~---~~gv~~~~~g~p~~~--~G~~~~~~i~~~~~l~~l~~-~~w~~DyVliD~~gdv~~ggf~l~i~~~~ad~VI 177 (329)
T cd02033 104 DVCFK---RDGVFAMELGGPEVG--RGCGGRGIIHGFELLEKLGF-HDWDFDYVLLDFLGDVVCGGFGLPIARDMAQKVI 177 (329)
T ss_pred ceEEE---eCCEEEecCCCCeec--ccccchHHHHHHHHHHHccC-ccccCCEEEEecCCcceeccccchhhhcCCceEE
Confidence 22221 146666533322211 1122211 1234444322 23479999999988653 1 1222334589999
Q ss_pred EEeCCChhhHHHH---HHHHHHHHhcC--CCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhc
Q 047623 194 LVTTPDITSLRDA---DRVTGLLECDG--IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNR 268 (340)
Q Consensus 194 iv~~~~~~s~~~~---~~~~~~l~~~~--~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~ 268 (340)
+|++++..++..+ .+.++.++..+ ...+++|+||+.... ..+++++.++.++++.||+|+.+.++..+
T Consensus 178 VVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~-------~ie~~ae~lgi~vLg~IP~D~~V~~a~~~ 250 (329)
T cd02033 178 VVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG-------EAQAFAAHAGIPILAAIPADEELRRKSAA 250 (329)
T ss_pred EeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc-------hHHHHHHHhCCCEEEECCCCHHHHHHHHc
Confidence 9999999999664 45556666553 567999999987532 26688899999999999999999999999
Q ss_pred CCceEeeCCCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623 269 GYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL 318 (340)
Q Consensus 269 g~~v~~~~~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (340)
|.++ .+|.++.++.|.+||++|.+.... .+..-....|++.|..
T Consensus 251 g~~~--~~p~s~~a~~f~~LA~~I~~~~~~----~~~~~~~~~~~~~~~~ 294 (329)
T cd02033 251 YQIV--GRPGTTWGPLFEQLATNVAEAPPM----RPKPLSQDELLGLFSS 294 (329)
T ss_pred CCee--cCCCCHHHHHHHHHHHHHHHhcCC----CCCCCCHHHHHHHhhc
Confidence 9853 567889999999999999986642 1233444566666654
No 39
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.95 E-value=3.3e-26 Score=207.03 Aligned_cols=241 Identities=27% Similarity=0.321 Sum_probs=207.3
Q ss_pred CCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccce
Q 047623 44 ELAGETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQAL 122 (340)
Q Consensus 44 ~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 122 (340)
......+++++|.|.|||+|.||+|.|+|+.++.. +..|+++|+|.++++...+|+.++. +++.++..+..++++..
T Consensus 98 ~s~~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a--~~i~~~~~~peRLDq~l 175 (366)
T COG4963 98 ISIAQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPA--FGIAEAVKQPERLDQVL 175 (366)
T ss_pred chhhhhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCch--hhHHHHhcCHHHhhHHH
Confidence 34566779999999999999999999999999976 9999999999999988899988765 88999998888777655
Q ss_pred ecc---cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCC
Q 047623 123 VRD---KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPD 199 (340)
Q Consensus 123 ~~~---~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~ 199 (340)
... ..-+++.+++....... ..++....+..+++.++. .||+||+|.|..+.+++...+.+||.|+++++++
T Consensus 176 ld~~~~~~~~~l~ll~a~~~~~~-~~d~~~~~~~~Ll~~~~~----~~~~vV~Dlp~~~~~~t~~vL~~Sd~iviv~e~s 250 (366)
T COG4963 176 LDSLLTRLASGLKLLAAPTELAK-NYDLKTGAVERLLDLLRG----SFDFVVVDLPNIWTDWTRQVLSGSDEIVIVAEPS 250 (366)
T ss_pred HHHHHhccCCCceeecCCcchhh-hcccccchHHHHHHHhhc----cCCeEEEcCCCccchHHHHHHhcCCeEEEEeccc
Confidence 432 22378888877666443 334667777888888877 7999999999888999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC--CceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChH-HHHHHhcCCceEeeC
Q 047623 200 ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSE-VIRSTNRGYPLVLNK 276 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~-~~~a~~~g~~v~~~~ 276 (340)
..+++.++++++.+++.+. .+..+|+|++...... +.+++.+.+|++.+..+|.|+. +..+.++|+++.+.+
T Consensus 251 l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~-----~~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E~~ 325 (366)
T COG4963 251 LASLRNAKELLDELKRLRPNDPKPILVLNRVGVPKRP-----EPSDLEEILGIESLLVLPFDPALFGDAANNGRMLSEVD 325 (366)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCC-----CHHHHHHHhCCchhccccCCchhhhhhhccCccccccC
Confidence 9999999999999997544 6899999999987522 2678999999999999999999 569999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcc
Q 047623 277 PPTLAGLAFEQAAWRLVEQD 296 (340)
Q Consensus 277 ~~s~~~~~~~~la~~i~~~~ 296 (340)
|++++++++.++++.+....
T Consensus 326 ~~~~~~k~l~~la~~l~~~~ 345 (366)
T COG4963 326 PGSPAAKALAQLAQSLGGRI 345 (366)
T ss_pred CCChHHHHHHHHHHHhcCcc
Confidence 99999999999999999874
No 40
>PRK11519 tyrosine kinase; Provisional
Probab=99.95 E-value=1.6e-26 Score=233.83 Aligned_cols=220 Identities=17% Similarity=0.166 Sum_probs=180.4
Q ss_pred CCCCccccccCCCCC-------------------CCCCCCCCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHH
Q 047623 5 IPSPTIQFKPLFPSK-------------------TIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKT 65 (340)
Q Consensus 5 ~~~p~~g~~p~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKT 65 (340)
++.|+||.||..+.. ......|.+...+..+.++.++.........++|+|+|++||+|||
T Consensus 462 ~g~pvlg~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKT 541 (719)
T PRK11519 462 HGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKT 541 (719)
T ss_pred cCCCeEEEEecchhhhhhccchhcccccccCcccceeecCCCCHHHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHH
Confidence 478999999976311 1122356666677788888887766666778999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecCCCCCCCCC
Q 047623 66 TTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPL 145 (340)
Q Consensus 66 t~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 145 (340)
|+|.|||..+|+.|+||++||+|++.++++.+|+..+. .++.+++.+...+++.+.... .++++++|++........
T Consensus 542 t~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~--~gl~~~l~~~~~l~~~i~~~~-~~~l~~lp~g~~~~~~~e 618 (719)
T PRK11519 542 FVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNV--NGLSDILIGQGDITTAAKPTS-IANFDLIPRGQVPPNPSE 618 (719)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCC--CCHHHHhCCCCCHHHhecccC-cCCEEEEeCCCCCCCHHH
Confidence 99999999999999999999999999999999988754 689999999888887776543 489999998876544444
Q ss_pred CcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH-HHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEE
Q 047623 146 GFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF-ITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMV 224 (340)
Q Consensus 146 ~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~-~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vv 224 (340)
.+....+..+++.+++ +||+|||||||...... ..+..++|.+++|+.++......+...++.+++.+.+..|+|
T Consensus 619 ll~s~~~~~ll~~l~~----~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~V 694 (719)
T PRK11519 619 LLMSERFAELVNWASK----NYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVI 694 (719)
T ss_pred HhhHHHHHHHHHHHHh----cCCEEEEeCCCcccchHHHHHHHHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 4556677777877776 79999999999764333 334477999999999999999999999999999999999999
Q ss_pred EecccCC
Q 047623 225 VNRVRTD 231 (340)
Q Consensus 225 iN~~~~~ 231 (340)
+|+++..
T Consensus 695 lN~v~~~ 701 (719)
T PRK11519 695 LNSIFRR 701 (719)
T ss_pred EeCCccC
Confidence 9999654
No 41
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.95 E-value=7.5e-27 Score=238.61 Aligned_cols=200 Identities=17% Similarity=0.058 Sum_probs=162.7
Q ss_pred CCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCc
Q 047623 26 PFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVN 105 (340)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~ 105 (340)
|.+...+-.+.++.+.......+..++|+|+|+|||+||||+|+|||..+|+.|++|++||+|++.++++.+|+..+.
T Consensus 522 p~s~~~Ea~r~lr~~l~~~~~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~-- 599 (754)
T TIGR01005 522 PRPVAEEELRVKEEAVAEAKSVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREV-- 599 (754)
T ss_pred CCCcchHHHHHHHHHHhhhccCCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCccc--
Confidence 444556666666666655556678899999999999999999999999999999999999999998999999998754
Q ss_pred ccHHHhhcCCCccccceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHH
Q 047623 106 YTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITA 185 (340)
Q Consensus 106 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~ 185 (340)
.++.+++.+...+++.+.+. ..++++++|++.........+....+..+++.+++ +||||||||||........+
T Consensus 600 ~gl~~~l~~~~~~~~~i~~~-~~~~l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~~----~yD~IiID~pp~~~~~d~~~ 674 (754)
T TIGR01005 600 SGLLDLLAGLRSLLLDLTAS-GAASLPMLDSGLFPHGITELLASPAMFSLVIHARL----YSDCVVVDVGTADPVRDMRA 674 (754)
T ss_pred CChHHHHcCCccHHHHhccC-CCCCeeEecCCCCCCCHHHHhccHHHHHHHHHHHh----hCCEEEEcCCCcchhHHHHH
Confidence 68889999888877766554 35899999998643332222445556667777766 79999999999887555555
Q ss_pred H-hcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 186 I-TPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 186 l-~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
+ ..+|.+++|+.++..+...+.+.++.++..+.+..|+|+|+++++.
T Consensus 675 l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 675 AARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDPND 722 (754)
T ss_pred hhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCChhh
Confidence 4 5699999999999999999999999999888888999999998754
No 42
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.94 E-value=4.3e-26 Score=230.85 Aligned_cols=221 Identities=15% Similarity=0.141 Sum_probs=179.7
Q ss_pred CCCCccccccCCCCC------------------------CCCCCCCCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCC
Q 047623 5 IPSPTIQFKPLFPSK------------------------TIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKG 60 (340)
Q Consensus 5 ~~~p~~g~~p~~~~~------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kG 60 (340)
++.|+||.||..+.. ......|.+...+..+.++.++......+..++|+|+|.+|
T Consensus 462 ~g~pvlg~IP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~ 541 (726)
T PRK09841 462 HGISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATP 541 (726)
T ss_pred cCCCeEEEecCchhhhhhhhhhhccccccccccccccccceeecCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEecCCC
Confidence 478999999985310 01223566667777888888877666677889999999999
Q ss_pred CCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecCCCC
Q 047623 61 GVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPR 140 (340)
Q Consensus 61 GvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 140 (340)
|+||||+|.|||..+|+.|+||++||+|++.+.++.+|+..+. .++.+++.+...+++.+.+.. .++++++|++...
T Consensus 542 g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~--~gl~~~l~~~~~~~~~i~~~~-~~~l~vl~~g~~~ 618 (726)
T PRK09841 542 DSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNE--HGLSEYLAGKDELNKVIQHFG-KGGFDVITRGQVP 618 (726)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCC--CCHHHHhCCCCCHHHheeccC-CCCEEEEeCCCCC
Confidence 9999999999999999999999999999999999999987754 789999999888887776654 3799999988755
Q ss_pred CCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH-HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCC
Q 047623 141 SKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG-FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIR 219 (340)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~-~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~ 219 (340)
......+....+..+++.+++ +||+|||||||..... .......+|.+++|+.++..+...+.+.++.+...+..
T Consensus 619 ~~p~ell~~~~~~~ll~~l~~----~yD~IIIDtPP~~~~~Da~~la~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~ 694 (726)
T PRK09841 619 PNPSELLMRDRMRQLLEWAND----HYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVN 694 (726)
T ss_pred CCHHHHhCcHHHHHHHHHHHh----cCCEEEEeCCCccccchHHHHHHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCc
Confidence 443333455667777877776 7999999999977442 33334679999999999999999999999999988889
Q ss_pred ceEEEEecccCCc
Q 047623 220 DIKMVVNRVRTDM 232 (340)
Q Consensus 220 ~~~vviN~~~~~~ 232 (340)
..|+|+|+++.+.
T Consensus 695 ~~G~VlN~~~~~~ 707 (726)
T PRK09841 695 IKGAILNGVIKRA 707 (726)
T ss_pred eEEEEEeCcccCc
Confidence 9999999997653
No 43
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.94 E-value=8.6e-26 Score=189.63 Aligned_cols=161 Identities=31% Similarity=0.438 Sum_probs=125.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCce
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNF 131 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 131 (340)
+|+|+|+|||+||||+|+|||.++|+.|++|++||+|+|.+++.+++. + +
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~--------------~--------------~-- 50 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWR--------------G--------------P-- 50 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHh--------------C--------------c--
Confidence 589999999999999999999999999999999999999655443210 0 0
Q ss_pred eEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHH--hcCCeEEEEeCCChhhHHHHHHH
Q 047623 132 ELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAI--TPANEAVLVTTPDITSLRDADRV 209 (340)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l--~~ad~viiv~~~~~~s~~~~~~~ 209 (340)
.....+..+++.+. .++||+||||+||+.+......+ ..+|.+++|++++..++..+.++
T Consensus 51 ---------------~~~~~l~~~~~~~~---~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~ 112 (169)
T cd02037 51 ---------------MKMGAIKQFLTDVD---WGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKA 112 (169)
T ss_pred ---------------chHHHHHHHHHHhh---cCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHH
Confidence 00112222333222 24799999999999877666555 58999999999999999999999
Q ss_pred HHHHHhcCCCceEEEEecccCCcc--cc--c--ccccHHHHHHHhCCceeEEecCCh
Q 047623 210 TGLLECDGIRDIKMVVNRVRTDMI--KG--E--DMMSVLDIQEMLGLALLGVIPEDS 260 (340)
Q Consensus 210 ~~~l~~~~~~~~~vviN~~~~~~~--~~--~--~~~~~~~i~~~~g~~v~~~Ip~d~ 260 (340)
++.+++.+.+..++|+|++..... .+ + .....+++.+.++.++++.||+++
T Consensus 113 ~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 113 IDMFKKVNIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred HHHHHhcCCCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 999999999999999999875311 00 1 113577889999999999999975
No 44
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.94 E-value=1.7e-25 Score=189.01 Aligned_cols=230 Identities=30% Similarity=0.359 Sum_probs=172.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCchhccCCcCCCc--ccHHHhhc---------------
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRNLDLLLGLENRVN--YTVVEVLN--------------- 113 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~l~~~~~~~~~~~--~~l~~~l~--------------- 113 (340)
.|+|+ +|||+||||+|+.||..+..+ |++|+.||+|+. .+++..+|.+.+.. -+..+++.
T Consensus 2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd-~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPD-SNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred eEEEe-cCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCC-CChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence 46776 999999999999988887776 599999999995 99999999986421 11112221
Q ss_pred -CCCccccceecc-cccCceeEeecCCCCCCC--CCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcC
Q 047623 114 -GDCRLDQALVRD-KRWSNFELLCISKPRSKL--PLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPA 189 (340)
Q Consensus 114 -~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~a 189 (340)
.....++..... ...++++++..+...... .........+.+++.+.. ++||+||+||-+++..+-+-....+
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~---~~~e~VivDtEAGiEHfgRg~~~~v 156 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLIL---NRYEVVIVDTEAGIEHFGRGTIEGV 156 (255)
T ss_pred ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhc---ccCcEEEEecccchhhhccccccCC
Confidence 111111111010 123567777666655222 221222334555555544 4699999999999999889999999
Q ss_pred CeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcC
Q 047623 190 NEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRG 269 (340)
Q Consensus 190 d~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g 269 (340)
|.+|+|++|+..++..+.++.+..++.+++++.+|+|+++... ..+.......+.++++.||+|+.+.++-..|
T Consensus 157 D~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~e------~~~~~~~~~~~~~vlg~iP~d~~v~~~dl~G 230 (255)
T COG3640 157 DLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEEE------ELLRELAEELGLEVLGVIPYDPEVVEADLKG 230 (255)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccchh------HHHHhhhhccCCeEEEEccCCHHHHhccccC
Confidence 9999999999999999999999999999999999999998752 2245666778999999999999999999999
Q ss_pred CceEeeCCCCHHHHHHHHHHHHHHhc
Q 047623 270 YPLVLNKPPTLAGLAFEQAAWRLVEQ 295 (340)
Q Consensus 270 ~~v~~~~~~s~~~~~~~~la~~i~~~ 295 (340)
.|+.... ...+++.++++.|...
T Consensus 231 ~pl~~~~---~v~~~i~~I~~~l~~~ 253 (255)
T COG3640 231 EPLNEEP---EVLKEIEEIAERLIKL 253 (255)
T ss_pred Cccccch---hhhHHHHHHHHHHHhc
Confidence 9997753 6788999999887653
No 45
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.94 E-value=3.8e-25 Score=197.55 Aligned_cols=231 Identities=30% Similarity=0.366 Sum_probs=172.3
Q ss_pred CCCCChhhHHHHHhhCCCCCCCC--CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcC
Q 047623 25 KPFSSKSSIQSVLQWNRKPELAG--ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLEN 102 (340)
Q Consensus 25 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~ 102 (340)
.|.....+..+......+..... ...++|+|+|+|||+||||+|+|||..+|+.|+||+++|+|..++++..+|+.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~ 109 (265)
T COG0489 30 LPKSTASEALRALRTNLKFAKVLRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLEN 109 (265)
T ss_pred CCcchhhhhhhhhhcchhhhhccccccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCC
Confidence 45554555455444433333333 3789999999999999999999999999999999999999999999999999976
Q ss_pred CCcccHHHhhcCCCccccceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH
Q 047623 103 RVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF 182 (340)
Q Consensus 103 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~ 182 (340)
.. ++.+.+.+.. +.+...+. ...++++++...........+....+.+++..... ..|||||||+||+.....
T Consensus 110 ~~--g~~~~~~g~~-~~~~~~~~-~~~~lsi~~~~~~p~~~r~~l~s~~~~qll~~~~~---~~~D~vIID~PP~~g~~d 182 (265)
T COG0489 110 LP--GLTELLAGEA-LEPVIQHD-GIKVLSILPLGPVPVIPRGLLGSKAMLQLLEDVLW---GEYDYVIIDTPPGTGDAD 182 (265)
T ss_pred CC--CcccccCCCc-cccceecC-ccceEEEEecCCCCCCChHhhhhHHHHHHHHHHhc---cCCCEEEEeCCCCchHHH
Confidence 42 5667777766 55554443 24788888777733333333455556666666554 359999999999998777
Q ss_pred HHHHh-cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChH
Q 047623 183 ITAIT-PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSE 261 (340)
Q Consensus 183 ~~~l~-~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~ 261 (340)
...+. .+|.+++|++|+......+++.++.++..+.+.+|+|.|+........- .-.-+...+.++ ++++.+|.+..
T Consensus 183 ~~i~~~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~-~g~~~~~~~~~~-~~~g~~p~~~~ 260 (265)
T COG0489 183 ATVLQRIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCG-EGGGEKYAERYG-PYLGSIPLDPS 260 (265)
T ss_pred HHHHhccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcccccC-CCchhhHHHHhc-cccccCCCChh
Confidence 77664 5889999999999999999999999999999999999997665432110 113445666777 88889998877
Q ss_pred HHH
Q 047623 262 VIR 264 (340)
Q Consensus 262 ~~~ 264 (340)
..+
T Consensus 261 ~~~ 263 (265)
T COG0489 261 ARE 263 (265)
T ss_pred hhh
Confidence 543
No 46
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.94 E-value=1e-24 Score=188.94 Aligned_cols=254 Identities=24% Similarity=0.344 Sum_probs=175.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCc-----cccceecc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCR-----LDQALVRD 125 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~ 125 (340)
|.|+|. +|||+||||++.||+.+||++|+||++|-|||...+...+++-+.. .++.|.+..... +++.+.
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~--~Tvld~~~~~~~~e~~~ledvv~-- 75 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAI--PTVLDLLREKGSVEDLELEDVVK-- 75 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS---SBHHHHHHHHCTGGGS-HHHHSE--
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccc--hhHHHHHhhccccccCCCCcEEE--
Confidence 468888 8999999999999999999999999999999996666666765543 677787764433 223332
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh--ccCCCCEEEEcCCCCC-CHHHHHHHh--cCCeEEEEeCCCh
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSR--QEGSPDFILIDCPAGI-DAGFITAIT--PANEAVLVTTPDI 200 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~D~VIiD~~~~~-~~~~~~~l~--~ad~viiv~~~~~ 200 (340)
+++.++..+.++.+.+ ...+....+...++.|.+. ...+||+|+.|.-+.+ --.+...+. .||.+++|+..+.
T Consensus 76 ~G~~gi~CvEsGGPeP--GvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamPir~g~a~evyIVtSge~ 153 (273)
T PF00142_consen 76 EGFKGILCVESGGPEP--GVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMPIREGYAQEVYIVTSGEF 153 (273)
T ss_dssp EEGGGEEEEE---SCT--TSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHHHHTTS-SEEEEEEBSSH
T ss_pred eccCCceeeccCCCcc--cccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehhhhhccCCEEEEEecCcH
Confidence 2446777775555432 2335566666666666654 2456999999998865 222233343 6999999999999
Q ss_pred hhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeC
Q 047623 201 TSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNK 276 (340)
Q Consensus 201 ~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~ 276 (340)
+++.++..+...+... +.+..|+|.|+-+... .....+++.+..|.++++.||++..+.++...++++.+..
T Consensus 154 mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~----e~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~~TVie~~ 229 (273)
T PF00142_consen 154 MSLYAANNICKAIKNFADRGGARLGGIICNSRNVDD----EEEIVEDFAERIGTPIIAFIPRSEIVQRAELYGKTVIEAA 229 (273)
T ss_dssp HHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTT----HHHHHHHHHHHHTSEEEEEE---HHHHHHHHCTS-CCCC-
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEecCCCCCC----chHHHHHHHHHcCCcEEEecCchHHHHHHHHcCCEEEEeC
Confidence 9999999999888754 2356779999554322 2234778999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623 277 PPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL 318 (340)
Q Consensus 277 ~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (340)
|.|+.++.|++||++|++..... .+.+-+...+++++.+
T Consensus 230 P~s~~a~~yr~LA~~I~~~~~~~---~P~PL~~eeL~~l~~~ 268 (273)
T PF00142_consen 230 PDSEQAQEYRELARKILENPEPV---IPKPLSDEELEELLLS 268 (273)
T ss_dssp TTSHHHHHHHHHHHHHHH----B---------HHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCCCCC---CCCCCCHHHHHHHHHH
Confidence 99999999999999999987544 2344555666666654
No 47
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.93 E-value=1e-24 Score=191.16 Aligned_cols=191 Identities=19% Similarity=0.137 Sum_probs=131.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
|++|+|.|.|||+||||+|+|||..|+++|++|++||+|+| +++..+++..... + .++
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ-~s~~~w~~~~~~~--~-------------------~~~ 58 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADEN-RPLTRWKENALRS--N-------------------TWD 58 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCC-CCHHHHHHhhccc--c-------------------CCC
Confidence 58999999999999999999999999999999999999999 7766665322110 0 001
Q ss_pred ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623 130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRV 209 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~ 209 (340)
...... .......+...++.+. .+.||||||||||+.+.....++..||.||+|+.|+..++..+.++
T Consensus 59 ~~~~~~---------~~~~~~~l~~~l~~~~---~~~yD~iiID~pp~~~~~~~~al~~aD~vliP~~ps~~d~~~~~~~ 126 (231)
T PRK13849 59 PACEVY---------AADELPLLEAAYEDAE---LQGFDYALADTHGGSSELNNTIIASSNLLLIPTMLTPLDIDEALST 126 (231)
T ss_pred ccceec---------CCCHHHHHHHHHHHHh---hCCCCEEEEeCCCCccHHHHHHHHHCCEEEEeccCcHHHHHHHHHH
Confidence 000000 0001112223333332 2479999999999999999999999999999999999999888888
Q ss_pred HHHHHhc----CC-CceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecCChHHHHHHhcCCceEeeCC
Q 047623 210 TGLLECD----GI-RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSEVIRSTNRGYPLVLNKP 277 (340)
Q Consensus 210 ~~~l~~~----~~-~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~~~~a~~~g~~v~~~~~ 277 (340)
++.+... +. -+..+++|++..+.. ........+..+ +.+++ ..|+....+.++...|.+.....+
T Consensus 127 ~~~v~~~~~~~~~~l~~~iv~~~~~~~~~-~~~~~~~~~~~~--~~~vl~t~I~~r~~~~~a~~~G~~~~~~~~ 197 (231)
T PRK13849 127 YRYVIELLLSENLAIPTAILRQRVPVGRL-TTSQRAMSDMLE--SLPVVDSPMHERDAFAAMKERGMLHLTLLN 197 (231)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEecccccC-CHHHHHHHHHHh--cCCCCCccccchHHHHHHHhcCCcccchhh
Confidence 7666431 11 245699999864321 111111223333 45566 679999999999999997765444
No 48
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.93 E-value=1.8e-24 Score=183.30 Aligned_cols=176 Identities=32% Similarity=0.419 Sum_probs=127.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhh--cCCCccccceecccccC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVL--NGDCRLDQALVRDKRWS 129 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~ 129 (340)
.|+|+|+|||+||||+|+|||..+ ++|++||+|++.++++.+|+.+...... .. .+.... +
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----------~ 63 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEED---FIVGGKKAVI----------D 63 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcccccc---ceecCCceEE----------c
Confidence 489999999999999999999999 7999999999999999999987643211 11 000000 1
Q ss_pred ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh-ccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHH
Q 047623 130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSR-QEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 208 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~ 208 (340)
.......+ ........+.+.+... ...+||||||||||+.+.....++..||.+++|+.++..++..+.+
T Consensus 64 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~l~~aD~vliv~~~~~~~~~~~~~ 134 (179)
T cd03110 64 PELCISCG---------LCGKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLER 134 (179)
T ss_pred hhhhcccc---------chHHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHHHHcCCEEEEEecCCcccHHHHHH
Confidence 11111000 0012222233333211 1357999999999999888888889999999999999999999999
Q ss_pred HHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEec
Q 047623 209 VTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIP 257 (340)
Q Consensus 209 ~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip 257 (340)
+++.++..+.+ +++|+|+++.... .....+++.+.+|.++++.||
T Consensus 135 ~~~~l~~~~~~-~~vV~N~~~~~~~---~~~~~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 135 AVELVRHFGIP-VGVVINKYDLNDE---IAEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred HHHHHHHcCCC-EEEEEeCCCCCcc---hHHHHHHHHHHcCCCeEEeCC
Confidence 99999877654 6899999987642 222355677788999999987
No 49
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.93 E-value=5.5e-24 Score=183.67 Aligned_cols=235 Identities=31% Similarity=0.396 Sum_probs=170.3
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccH-----HHhhc----------C
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTV-----VEVLN----------G 114 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l-----~~~l~----------~ 114 (340)
|+.|+|+|+|||+||||+|+|||..|+. .++++|+|+|...|+++.+|+.+....... ..+-. .
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~-~~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~ 79 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGD-KYKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAE 79 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhcc-ccceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHHH
Confidence 4679999999999999999999999986 479999999999999999998763311100 00000 0
Q ss_pred CCccccceecccccCc-----------eeEe-----------------ecCC----CCCCCCCCcchhhHHHHHHHHHHh
Q 047623 115 DCRLDQALVRDKRWSN-----------FELL-----------------CISK----PRSKLPLGFGGKALTWVVEALKSR 162 (340)
Q Consensus 115 ~~~~~~~~~~~~~~~~-----------l~~l-----------------~~~~----~~~~~~~~~~~~~~~~l~~~l~~~ 162 (340)
-+.++..+.-....+. ..+. .+.. ...........+....++..+++.
T Consensus 80 vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~ 159 (284)
T COG1149 80 VCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKH 159 (284)
T ss_pred hCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHh
Confidence 1122222110000000 0000 0000 000111123344456677777665
Q ss_pred ccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHH
Q 047623 163 QEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVL 242 (340)
Q Consensus 163 ~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~ 242 (340)
..+.-|++|||+||+.+-...+++..+|.+|+|+.|++.+++.+++.++.++..+++ .++|+||++... . .++
T Consensus 160 a~E~~~~~IIDsaaG~gCpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~~g~----s--~ie 232 (284)
T COG1149 160 AKELADLLIIDSAAGTGCPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYNLGD----S--EIE 232 (284)
T ss_pred hhhhcceeEEecCCCCCChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecCCCCc----h--HHH
Confidence 544579999999999999999999999999999999999999999999999987764 679999995442 1 477
Q ss_pred HHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHHHHHHHHh
Q 047623 243 DIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVE 294 (340)
Q Consensus 243 ~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~la~~i~~ 294 (340)
+..+..|.++++.||+|..+.++...|.|+.. ++++.+..+..+++++++
T Consensus 233 ~~~~e~gi~il~~IPyd~~i~~~~~~g~~~~~--~~~k~~~~~~~~~~~~~~ 282 (284)
T COG1149 233 EYCEEEGIPILGEIPYDKDIPEAYVNGEPFVE--PDSKEAEAILEEAEKLKE 282 (284)
T ss_pred HHHHHcCCCeeEECCcchhHHHHHhCCCcccc--ccchHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999988 677788888888777765
No 50
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.9e-23 Score=175.60 Aligned_cols=239 Identities=24% Similarity=0.358 Sum_probs=181.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCC-----ccccceec
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC-----RLDQALVR 124 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~ 124 (340)
++.|+|. +|||.||||++.|+|++||+.|++|++|-|||...+...++|-... .++.|.+.... .+++.+.
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~i--pTVld~lre~~~~e~~~ledvi~- 76 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAI--PTVLDTLREKGEVEDLELEDVIF- 76 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCccc--chHHHHHHhcCccccCCHHHhee-
Confidence 4678998 8999999999999999999999999999999996666666663332 57777776533 2233332
Q ss_pred ccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh--ccCCCCEEEEcCCCCCC-HHHHHHHh--cCCeEEEEeCCC
Q 047623 125 DKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSR--QEGSPDFILIDCPAGID-AGFITAIT--PANEAVLVTTPD 199 (340)
Q Consensus 125 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~D~VIiD~~~~~~-~~~~~~l~--~ad~viiv~~~~ 199 (340)
+++.++..+-++.+.+. ..+....+...++.|.++ ..+..|+||+|..+.+- -.+...+. .||.+++|++.+
T Consensus 77 -~Gf~Gv~CVEsGGPepG--vGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiReg~AdeiyIVtSge 153 (278)
T COG1348 77 -TGFGGVKCVESGGPEPG--VGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGE 153 (278)
T ss_pred -ccCCceEEeecCCCCCC--CCcccchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeeehhcccCcEEEEEecCc
Confidence 34567777655554333 234555566666666654 13346999999998652 22333444 699999999999
Q ss_pred hhhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEee
Q 047623 200 ITSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLN 275 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~ 275 (340)
.+++.++..+.+-+.+. +.+..++|.|.-..+. ...-..++.+.+|.+++..||++..+.++...++++.++
T Consensus 154 ~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~----e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~~kTvie~ 229 (278)
T COG1348 154 MMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDR----ERELVEAFAERLGTQLIHFVPRDNIVQKAELNGKTVIEY 229 (278)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCccc----HHHHHHHHHHHhCCceEeeccchHHHHHHHHcCcchhhh
Confidence 99999999888887653 3456778888755332 223477899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhccccc
Q 047623 276 KPPTLAGLAFEQAAWRLVEQDSMK 299 (340)
Q Consensus 276 ~~~s~~~~~~~~la~~i~~~~~~~ 299 (340)
+|+|..+..|++||++|.+-...-
T Consensus 230 ~P~s~~a~~yr~LA~~I~~n~~~v 253 (278)
T COG1348 230 APDSNQAEEYRELAKKILENEKGV 253 (278)
T ss_pred CcchhHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999988654
No 51
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.92 E-value=1.6e-24 Score=185.80 Aligned_cols=191 Identities=30% Similarity=0.409 Sum_probs=125.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCcee
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE 132 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 132 (340)
|+|+|+|||+||||+|++||.+|+++|++|+++|+|++.+....+++.......+....... ...++...
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 70 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAI----------LKNFESQD 70 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCH----------HESCCHHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhh----------hhccchhh
Confidence 78999999999999999999999999999999999999666666654410000000000000 00000000
Q ss_pred EeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHH
Q 047623 133 LLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGL 212 (340)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~ 212 (340)
+.. .........+..+++.+.+ ..||+||||||++.......++..+|.+|+|+.++..++..+.++++.
T Consensus 71 ~~~-------~~~~~~~~~l~~~l~~l~~---~~yD~iiiD~~~~~~~~~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~ 140 (195)
T PF01656_consen 71 IYQ-------GEEYLDPELLREILESLIK---SDYDYIIIDTPPGLSDPVRNALAAADYVIVPIEPDPSSIEGAERLIEL 140 (195)
T ss_dssp HHH-------HCHCHHHHHHHHHHHHHHH---TTSSEEEEEECSSSSHHHHHHHHTSSEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhh-------hhhhhHHHHHHHHHHHhhh---ccccceeecccccccHHHHHHHHhCceeeeecCCcHHHHHHHHHHHHH
Confidence 000 0000122334555555444 249999999999999999999999999999999999999999999999
Q ss_pred HHhcC--CCceEEEEecccCCcccccccccHHHHHHHhC-Ccee-EEecCChHHHH
Q 047623 213 LECDG--IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLG-LALL-GVIPEDSEVIR 264 (340)
Q Consensus 213 l~~~~--~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g-~~v~-~~Ip~d~~~~~ 264 (340)
++..+ .+.+++|+|+++++....... .......... ..++ +.||++.++.+
T Consensus 141 l~~~~~~~~~~~vv~N~v~~~~~~~~~~-~~~~~~~~~~~~~vl~~~Ip~~~~v~~ 195 (195)
T PF01656_consen 141 LKRLGKKLKIIGVVINRVDPGNESKLQE-EIEEIERELYVPVVLPGVIPYSEAVSE 195 (195)
T ss_dssp HHHHTHTEEEEEEEEEEETSCCHHHHHH-HHHHHHHHCECCCBESEEEE--HHHHH
T ss_pred HHHhccccceEEEEEeeeCCCccchHHH-HHHHHHHHhCCCcCcCCcCCCCCCCCC
Confidence 99866 458899999997763211111 1222233333 3344 89999998754
No 52
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.88 E-value=1.3e-21 Score=158.77 Aligned_cols=135 Identities=40% Similarity=0.624 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCce
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNF 131 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 131 (340)
+|+|+++|||+||||++.++|..++++|.+|+++|+|++.+++.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~------------------------------------ 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------ 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC------------------------------------
Confidence 58999999999999999999999999999999999998732211
Q ss_pred eEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHH
Q 047623 132 ELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTG 211 (340)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~ 211 (340)
||+||||+|++.+.....++..||.+++|+.++..+++.+.++++
T Consensus 45 -----------------------------------yd~VIiD~p~~~~~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~ 89 (139)
T cd02038 45 -----------------------------------YDYIIIDTGAGISDNVLDFFLAADEVIVVTTPEPTSITDAYALIK 89 (139)
T ss_pred -----------------------------------CCEEEEECCCCCCHHHHHHHHhCCeEEEEcCCChhHHHHHHHHHH
Confidence 999999999999988899999999999999999999999999998
Q ss_pred HHHhc-CCCceEEEEecccCCcccccccccHHHHHHH---hCCceeEEec
Q 047623 212 LLECD-GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEM---LGLALLGVIP 257 (340)
Q Consensus 212 ~l~~~-~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~---~g~~v~~~Ip 257 (340)
.+... +..++++|+|++.+.....+....+.++.+. .++++++.||
T Consensus 90 ~l~~~~~~~~~~lVvN~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~~ 139 (139)
T cd02038 90 KLAKQLRVLNFRVVVNRAESPKEGKKVFKRLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred HHHHhcCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCCChhhceecC
Confidence 88653 4468899999998764333333333333332 3457777776
No 53
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.87 E-value=5.3e-21 Score=147.57 Aligned_cols=102 Identities=34% Similarity=0.571 Sum_probs=94.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCc
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN 130 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 130 (340)
+|+|+|+|||+||||++.|||..+++. |++|+++|+|++.++
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------------------------------
Confidence 589999999999999999999999998 999999999999332
Q ss_pred eeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHH
Q 047623 131 FELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVT 210 (340)
Q Consensus 131 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~ 210 (340)
|+||||+||+.+.....++..||.+++|+.++..++..+.+++
T Consensus 44 -------------------------------------D~IIiDtpp~~~~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~ 86 (106)
T cd03111 44 -------------------------------------DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKRLL 86 (106)
T ss_pred -------------------------------------CEEEEeCCCCcCHHHHHHHHHcCeEEEEecCChHHHHHHHHHH
Confidence 8999999999999888999999999999999999999999999
Q ss_pred HHHHhcCC---CceEEEEec
Q 047623 211 GLLECDGI---RDIKMVVNR 227 (340)
Q Consensus 211 ~~l~~~~~---~~~~vviN~ 227 (340)
+.+++.+. .++.+|+||
T Consensus 87 ~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 87 ELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHcCCCCcCceEEEecC
Confidence 99987664 488899996
No 54
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.84 E-value=1.2e-20 Score=156.19 Aligned_cols=146 Identities=31% Similarity=0.451 Sum_probs=114.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC---------Cccccc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD---------CRLDQA 121 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~---------~~~~~~ 121 (340)
|+|+|+|.+||+|||++|.|||..+|+.|++|++||+|..++.+..+++.+.. .++.+++... ..+.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~l~~~ 78 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPE--RGLSDLLYDKKSGDENLSERDLSDH 78 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSS--SSHHHHHTTSHC--C-HHHSHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccc--cchhhHhcCccccccchhhhhHHHH
Confidence 68999999999999999999999999999999999999998999999988765 6888998876 344444
Q ss_pred eecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHH-HHHhcCCeEEEEeCCCh
Q 047623 122 LVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFI-TAITPANEAVLVTTPDI 200 (340)
Q Consensus 122 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~-~~l~~ad~viiv~~~~~ 200 (340)
+.+.. .++++++++....... ..+..+.+..+++.+++ .||+||||+|+....... .++..||.+++++.++.
T Consensus 79 ~~~~~-~~~l~~~~~~~~~~~~-~~~~~~~~~~li~~l~~----~yd~IivD~~~~~~~~~~~~~l~~~D~ii~v~~~~~ 152 (157)
T PF13614_consen 79 IYSDA-HDGLDLLPPPSSPEDL-EELTPEDVEELIDALKE----HYDYIIVDLPSSLSNPDTQAVLELADKIILVVRPDV 152 (157)
T ss_dssp CEEES-STTEEEE--SSSSHHH-HHHTSHHHHHHHHHHHH----HSSEEEEEEESTTTHTHHHHHHTTHSEEEEEEETTH
T ss_pred heecc-CCCeEEecCCCCCCch-hhcCHHHHHHHHHHHHH----cCCEEEEECcCCccHHHHHHHHHHCCEEEEEECCCc
Confidence 44322 2778888766554322 23566788899999988 699999999999877765 48899999999999999
Q ss_pred hhHH
Q 047623 201 TSLR 204 (340)
Q Consensus 201 ~s~~ 204 (340)
.+++
T Consensus 153 ~s~~ 156 (157)
T PF13614_consen 153 TSIR 156 (157)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8875
No 55
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.83 E-value=2.7e-19 Score=153.36 Aligned_cols=184 Identities=22% Similarity=0.193 Sum_probs=122.3
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
|++|+|.|.|||+||||.+..||..|+++|.+|++||+||+ ..+..|-......+ .+. +
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn-~pl~~W~~~a~~~~-----------~~~---------~ 59 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPN-QPLAKWAENAQRPG-----------AWP---------D 59 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC-CcHHHHHHhccccC-----------CCC---------C
Confidence 68999999999999999999999999999999999999999 44443321111100 000 1
Q ss_pred ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623 130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRV 209 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~ 209 (340)
++.+... .....+...++.... ..|||||||+.++-+.....++..||.||+|+.++..+...+.+.
T Consensus 60 ~~~V~~~----------~e~~~l~~~~e~a~~---~~~d~VlvDleG~as~~~~~aia~sDlVlIP~~~s~lD~~eA~~t 126 (231)
T PF07015_consen 60 RIEVYEA----------DELTILEDAYEAAEA---SGFDFVLVDLEGGASELNDYAIARSDLVLIPMQPSQLDADEAAKT 126 (231)
T ss_pred CeeEEec----------cchhhHHHHHHHHHh---cCCCEEEEeCCCCCchhHHHHHHHCCEEEECCCCChHHHHHHHHH
Confidence 2222110 011122333333332 359999999999988888999999999999999999999999988
Q ss_pred HHHHHhc----CC-CceEEEEecccCCcccccccccHHHHHHHhCCceeE-EecCChHHHHHHhcCC
Q 047623 210 TGLLECD----GI-RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG-VIPEDSEVIRSTNRGY 270 (340)
Q Consensus 210 ~~~l~~~----~~-~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~-~Ip~d~~~~~a~~~g~ 270 (340)
++.+.+. +. -...++++|++... .......+.++.+ ++|++. .+.+...+.+-...|.
T Consensus 127 ~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~~G~ 190 (231)
T PF07015_consen 127 FKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQRIISEQLE--SLPVLDTELHERDAFRAMFSRGL 190 (231)
T ss_pred HHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHHHHHHHHh--cCCccccccccHHHHHHHHHhcc
Confidence 8888753 11 25679999987542 1111111222222 477774 4545555655556664
No 56
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.82 E-value=2.8e-19 Score=137.68 Aligned_cols=99 Identities=28% Similarity=0.411 Sum_probs=88.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCce
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNF 131 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 131 (340)
+|+|.|.|||+||||+|.+||..++++|.+|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 589999999999999999999999999999999999987
Q ss_pred eEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHH
Q 047623 132 ELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTG 211 (340)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~ 211 (340)
||+||||+||+.+.....++..||.+++|+.++..++..+.++++
T Consensus 40 -----------------------------------~d~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 40 -----------------------------------YDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred -----------------------------------CCEEEEeCcCCCCHHHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 899999999999888889999999999999999999999999988
Q ss_pred H---HHhc--CCCceEEEEe
Q 047623 212 L---LECD--GIRDIKMVVN 226 (340)
Q Consensus 212 ~---l~~~--~~~~~~vviN 226 (340)
. .+.. .....++|+|
T Consensus 85 ~~~~~~~~~~~~~~~~vv~n 104 (104)
T cd02042 85 TLILEDRLNPDLDILGILPT 104 (104)
T ss_pred HHHHHHhcCCCCceEEEEeC
Confidence 3 3322 3356777776
No 57
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.81 E-value=1.7e-19 Score=160.97 Aligned_cols=175 Identities=21% Similarity=0.169 Sum_probs=111.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcC----CCcccHHHhhcCCCccccceeccccc
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLEN----RVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
+.++++|||+||||+|+++|..+|+.|++|++||+|++ ++++.+|+.+- .+..++.++.....+..+.+.+.. .
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~-~ 79 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYR-Q 79 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHH-H
Confidence 45667999999999999999999999999999999998 79999998761 122233333333333222221110 0
Q ss_pred CceeEeecCCCCCC-------CCCCcchhh---HHHHHHHHHHhccCCCCEEEEcCCCCCCHH---H--------HHHHh
Q 047623 129 SNFELLCISKPRSK-------LPLGFGGKA---LTWVVEALKSRQEGSPDFILIDCPAGIDAG---F--------ITAIT 187 (340)
Q Consensus 129 ~~l~~l~~~~~~~~-------~~~~~~~~~---~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~---~--------~~~l~ 187 (340)
...+.+........ .....+.++ +..+.+.+. ..+||+|||||||..... . ...+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~---~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~ 156 (254)
T cd00550 80 EVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYID---EAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILS 156 (254)
T ss_pred HHHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHh---cCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhc
Confidence 11111111100000 000011111 222333332 237999999999952211 0 11222
Q ss_pred --cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 188 --PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 188 --~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
..+.+++|+.++..++..+.+.++.+...+.+..++|+|++.+..
T Consensus 157 d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~ 203 (254)
T cd00550 157 DPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPED 203 (254)
T ss_pred CCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccc
Confidence 245799999999999999999999999999999999999998754
No 58
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.80 E-value=1.1e-19 Score=156.09 Aligned_cols=223 Identities=19% Similarity=0.171 Sum_probs=124.2
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN 130 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 130 (340)
.+|+|.|+|||+||||+|+|||.+|+++|++|.++|+|.+.+++..+++..... .+ .....+ . .+.
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~----~~--~~gi~L-----p---~p~ 66 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAW----AQ--RDGIEL-----P---VPS 66 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHH----HH--HHT--------------E
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchh----HH--hcCccc-----C---Ccc
Confidence 489999999999999999999999999999999999999889898888533210 00 000000 0 011
Q ss_pred eeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH----
Q 047623 131 FELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA---- 206 (340)
Q Consensus 131 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~---- 206 (340)
...++................+.+++..+.. ++||+|||||++.+.....+...||.++.|...+..+++-+
T Consensus 67 ~~~L~~~~~~v~~~~~~~~~~L~q~l~~l~~----~~DfLVID~PGtd~~lsr~Ahs~ADtLiTPlNdSfvDfDllg~vD 142 (261)
T PF09140_consen 67 HFFLPPDQASVWEGENVEDKRLEQALADLEG----DLDFLVIDTPGTDDRLSRVAHSMADTLITPLNDSFVDFDLLGQVD 142 (261)
T ss_dssp EE-SSSHHHHTTS-HHHHHHHHHHHHHHHHH----H-SEEEEEE-SSS-HHHHHHHHT-SEEEEEEESSHHHHCCCEEE-
T ss_pred ceeecccccccccCcchhHHHHHHHHHHHhc----CCCEEEEeCCCCCcHHHHHHHHhCCEEEccCchhHHhHHHHhccC
Confidence 1112110000000000111234444544443 79999999998888888888899999999998876665422
Q ss_pred ------------HHHHHHHHhcCC----C--ceEEEEecccCCcccc--cccccHHHHHHHhCCceeEEecCChHHHHHH
Q 047623 207 ------------DRVTGLLECDGI----R--DIKMVVNRVRTDMIKG--EDMMSVLDIQEMLGLALLGVIPEDSEVIRST 266 (340)
Q Consensus 207 ------------~~~~~~l~~~~~----~--~~~vviN~~~~~~~~~--~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~ 266 (340)
.+++...++... . ...++-||.......+ .....+.++.+..|+++..-+.+.-.+++..
T Consensus 143 ~~~~~v~~ps~Yse~vw~~r~~ra~~~~~~idWvv~rnRl~~~~a~Nk~~~~~~l~~ls~rigfr~~~G~~eRvi~RelF 222 (261)
T PF09140_consen 143 PETFKVIGPSVYSEMVWEARKLRAQADGKPIDWVVLRNRLSHLDARNKRRVEEALEELSKRIGFRVAPGFSERVIYRELF 222 (261)
T ss_dssp TTTS-EEEE-HHHHHHHHHHHCCCCTSSS--EEEEEEESBTT--HHHHHHHHHHHHHHHHHHT-EEEE--B--HHHCCCG
T ss_pred cccceecCccHHHHHHHHHHHHHHHcCCCCccEEEEecCccHHHhHHHHHHHHHHHHHHHhhCceeCCCcchhhhhHHhc
Confidence 233333343222 2 3446668876543111 1223466788888999987777777777888
Q ss_pred hcCCceEeeCCCC---------HHHHHHHHHHHH
Q 047623 267 NRGYPLVLNKPPT---------LAGLAFEQAAWR 291 (340)
Q Consensus 267 ~~g~~v~~~~~~s---------~~~~~~~~la~~ 291 (340)
-.|.++.+..... .+.+++++|...
T Consensus 223 p~GlTllDl~~~~~~~~~~shvaARqElr~l~~~ 256 (261)
T PF09140_consen 223 PRGLTLLDLKDAGVGALNMSHVAARQELRDLLKA 256 (261)
T ss_dssp GGT--GGGSCTTB-S---CHHHHHHHHHHHHHHH
T ss_pred cccchhhccccccCCCCchHHHHHHHHHHHHHHH
Confidence 8888877654322 356666666554
No 59
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.80 E-value=2.2e-19 Score=156.65 Aligned_cols=166 Identities=23% Similarity=0.172 Sum_probs=105.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC---CCccccceecc----
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG---DCRLDQALVRD---- 125 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~---- 125 (340)
|.++++|||+||||+++++|.++++.|++|++||+|++.+ +.. . ...++.+++.. ....+....+.
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~-~~~----~--~~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 73 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHN-LSD----K--GLPNLSDAFIVEDPEIAPNLYREEVDATR 73 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcc-ccc----c--cCCCchhhhccCChHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999963 111 0 11233333321 00000000000
Q ss_pred -----cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCC-CCEEEEcCCCCCCH---HHHHHHhc--CCeEEE
Q 047623 126 -----KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGS-PDFILIDCPAGIDA---GFITAITP--ANEAVL 194 (340)
Q Consensus 126 -----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~D~VIiD~~~~~~~---~~~~~l~~--ad~vii 194 (340)
....+..+++...........+ .+..+++.+.+ . ||+|||||||.... .....+.. +|.+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~p~~~ell---~~~~l~~~l~~----~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vll 146 (217)
T cd02035 74 RVERAWGGEGGLMLELAAALPGIEELA---SLLAVFREFSE----GLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRL 146 (217)
T ss_pred HhhhcccchhhhHHhHhccCCCHHHHH---HHHHHHHHHhc----CCCCEEEECCCCchHHHHHHHHHHccCCCceEEEE
Confidence 0002223333222221111100 13344444443 5 99999999996432 22333433 489999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 195 VTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 195 v~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
|+.++..++..+.+.++.++..+.+..++|+|++.+..
T Consensus 147 V~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~~ 184 (217)
T cd02035 147 VTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPAE 184 (217)
T ss_pred EeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCcc
Confidence 99999999999999999999999888999999988754
No 60
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.65 E-value=4.8e-15 Score=135.25 Aligned_cols=179 Identities=26% Similarity=0.304 Sum_probs=101.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcc-cHH---HhhcCCCccccceec--
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNY-TVV---EVLNGDCRLDQALVR-- 124 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~-~l~---~~l~~~~~~~~~~~~-- 124 (340)
++|. +++||||||||+|+.+|.++|++|++|+++..||. .+++..||.+-.... .+. ++..-+.+....+.+
T Consensus 2 r~~~-~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa-~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~ 79 (305)
T PF02374_consen 2 RILF-FGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA-HSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYW 79 (305)
T ss_dssp SEEE-EEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT-THHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHH
T ss_pred eEEE-EecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC-ccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHH
Confidence 4444 45999999999999999999999999999999999 888888876421100 000 000000000000000
Q ss_pred --cc-ccC-ceeEeecCCCCCCCCCC-cchh---hHHHHHHHHHHhccCCCCEEEEcCCCCCCHH---------------
Q 047623 125 --DK-RWS-NFELLCISKPRSKLPLG-FGGK---ALTWVVEALKSRQEGSPDFILIDCPAGIDAG--------------- 181 (340)
Q Consensus 125 --~~-~~~-~l~~l~~~~~~~~~~~~-~~~~---~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~--------------- 181 (340)
.. ... .+.......-....... .+.+ .+..+.+.+. ..+||+||+||||.-...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~---~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l~~ 156 (305)
T PF02374_consen 80 EEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLE---SGEYDLIVVDTPPTGHTLRLLSLPERLRWWLDR 156 (305)
T ss_dssp HHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHH---HCSTSEEEEESSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHH---hCCCCEEEECCCCcHHHHHHHhHHHHHHHHHHH
Confidence 00 000 00000000000000000 1111 1223333333 368999999999952110
Q ss_pred -----------------------------------------HHHHHhc--CCeEEEEeCCChhhHHHHHHHHHHHHhcCC
Q 047623 182 -----------------------------------------FITAITP--ANEAVLVTTPDITSLRDADRVTGLLECDGI 218 (340)
Q Consensus 182 -----------------------------------------~~~~l~~--ad~viiv~~~~~~s~~~~~~~~~~l~~~~~ 218 (340)
....+.. ...+++|+.|+..++..+.++.+.+...++
T Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L~~~gi 236 (305)
T PF02374_consen 157 LLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTELKLYGI 236 (305)
T ss_dssp HHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHHHhcCC
Confidence 0011211 236999999999999999999999999999
Q ss_pred CceEEEEecccCCccc
Q 047623 219 RDIKMVVNRVRTDMIK 234 (340)
Q Consensus 219 ~~~~vviN~~~~~~~~ 234 (340)
+.-.+|+||+-+....
T Consensus 237 ~v~~vVvNrvlp~~~~ 252 (305)
T PF02374_consen 237 PVDAVVVNRVLPEEED 252 (305)
T ss_dssp EEEEEEEEEE-TTCST
T ss_pred ccCeEEEEcccccccc
Confidence 9999999999876543
No 61
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.59 E-value=6.7e-14 Score=114.42 Aligned_cols=145 Identities=21% Similarity=0.231 Sum_probs=88.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCcee
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE 132 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 132 (340)
|.+. +++|+||||++.+++..+.+.|.+|+++|+|++.... ...++.+...+++... .+++.
T Consensus 2 i~~~-G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~-------------~~~~~~~~~~~~~~~~----~~~~~ 63 (148)
T cd03114 2 IGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFS-------------GGAILGDRIRMERHAS----DPGVF 63 (148)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCc-------------ccchhcCceEhhheec----CCCce
Confidence 4455 8999999999999999999999999999999862211 1111111111211111 13333
Q ss_pred E--eecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHH
Q 047623 133 L--LCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVT 210 (340)
Q Consensus 133 ~--l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~ 210 (340)
+ ++.+..... ........++.++. .+||+||||+ ++.......++..||.+++|++|+..+-..+...
T Consensus 64 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~- 133 (148)
T cd03114 64 IRSLATRGFLGG-----LSRATPEVIRVLDA---AGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPGAGDDIQAIKA- 133 (148)
T ss_pred EEEcCCcCcccc-----cchhHHHHHHHHHh---cCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCCchhHHHHhhh-
Confidence 3 333221111 11223344455543 3799999999 5566666778899999999999996555544443
Q ss_pred HHHHhcCCCceEEEEeccc
Q 047623 211 GLLECDGIRDIKMVVNRVR 229 (340)
Q Consensus 211 ~~l~~~~~~~~~vviN~~~ 229 (340)
..++..+ .+++|+++
T Consensus 134 ~~~~~~~----~~~~~k~~ 148 (148)
T cd03114 134 GIMEIAD----IVVVNKAD 148 (148)
T ss_pred hHhhhcC----EEEEeCCC
Confidence 2233222 37788864
No 62
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.47 E-value=4.4e-12 Score=113.99 Aligned_cols=166 Identities=20% Similarity=0.255 Sum_probs=99.5
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
...+++|+++ +.+|+||||++++||.++++.|++|+++|+|........ .+..+...
T Consensus 69 ~~~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~----------ql~~~~~~------------ 125 (272)
T TIGR00064 69 ENKPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIE----------QLEEWAKR------------ 125 (272)
T ss_pred CCCCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHH----------HHHHHHHh------------
Confidence 3456899999 799999999999999999999999999999975222100 00000000
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH--HHHH-------HHh-----cCCeE
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA--GFIT-------AIT-----PANEA 192 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~~~-------~l~-----~ad~v 192 (340)
-++.+++..... ++. ....+.+.....++||+|||||+|.... .... ... .+|.+
T Consensus 126 --~~i~~~~~~~~~-------dp~--~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~ 194 (272)
T TIGR00064 126 --LGVDVIKQKEGA-------DPA--AVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEV 194 (272)
T ss_pred --CCeEEEeCCCCC-------CHH--HHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceE
Confidence 112222222110 111 1122223222234799999999996632 1111 111 28889
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 193 VLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 193 iiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
++|+... ..-+.+.+..++.+.. ...++|+|+++...... ....+...++.|+.
T Consensus 195 ~LVl~a~-~~~~~~~~~~~f~~~~--~~~g~IlTKlDe~~~~G----~~l~~~~~~~~Pi~ 248 (272)
T TIGR00064 195 LLVLDAT-TGQNALEQAKVFNEAV--GLTGIILTKLDGTAKGG----IILSIAYELKLPIK 248 (272)
T ss_pred EEEEECC-CCHHHHHHHHHHHhhC--CCCEEEEEccCCCCCcc----HHHHHHHHHCcCEE
Confidence 9998886 3444555554444333 45799999998876322 34466667787776
No 63
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.46 E-value=6.6e-13 Score=120.97 Aligned_cols=48 Identities=38% Similarity=0.554 Sum_probs=43.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGL 100 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~ 100 (340)
.|.++++||||||||+|+.+|.++|+.|++|++|..||. .+++..|+.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA-hsL~d~f~~ 50 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA-HSLGDVFDL 50 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC-CchHhhhcc
Confidence 344555999999999999999999999999999999999 888888877
No 64
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.46 E-value=6e-13 Score=116.58 Aligned_cols=191 Identities=16% Similarity=0.153 Sum_probs=110.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCcee
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE 132 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 132 (340)
|.|+|+..|+|||+++++|+..|+++|++|.++.-=.. +. ... ..+. +. ..+........... ....+.
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~-g~-~~~--~~~~---d~-~~~~~~~~~~~~~~---~~~~~~ 70 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQS-GC-EET--DRNG---DA-LALQRLSGLPLDYE---DVNPYR 70 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEec-CC-CCC--CCcH---HH-HHHHHHcCCCCChh---hcCcee
Confidence 68899999999999999999999999999988642111 10 000 0000 00 11111001000000 000111
Q ss_pred Ee-ecCCCCCC--CCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH------HHHH-hcCCeEEEEeCCChhh
Q 047623 133 LL-CISKPRSK--LPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF------ITAI-TPANEAVLVTTPDITS 202 (340)
Q Consensus 133 ~l-~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~------~~~l-~~ad~viiv~~~~~~s 202 (340)
+- |..+.... ....... ..+.+.+.+ +.++||+||||+++++.... ...+ ..-.-+++|+.++..+
T Consensus 71 ~~~~~sp~~a~~~~~~~~~~---~~i~~~~~~-l~~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~ 146 (222)
T PRK00090 71 FEEPLSPHLAAALEGVAIDL---EKISAALRR-LAQQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGC 146 (222)
T ss_pred eCCCCCHHHHHHHhCCCCCH---HHHHHHHHH-HHhhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcH
Confidence 10 00000000 0001122 333334332 33479999999998753221 1111 1233488999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCC
Q 047623 203 LRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPED 259 (340)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d 259 (340)
+..+...++.++..+.+..++|+|+++++. ........+.+.+.++.++++.+|+-
T Consensus 147 i~~~~~~i~~l~~~~~~i~gvIlN~~~~~~-~~~~~~~~~~l~~~~gi~vlg~ip~~ 202 (222)
T PRK00090 147 INHTLLTLEAIRARGLPLAGWVANGIPPEP-GLRHAENLATLERLLPAPLLGELPYL 202 (222)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEccCCCcc-hhHHHHHHHHHHHHcCCCeEEecCCC
Confidence 999988888888888888899999998761 11122346678888999999999983
No 65
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.44 E-value=6.8e-12 Score=109.51 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=45.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhcc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLL 98 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~ 98 (340)
|++++.|.++|||+||||+|++||.+++++|.+|+++|+|+++++++.+.
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~ 50 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYK 50 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHH
Confidence 57899999999999999999999999999999999999999977665443
No 66
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.43 E-value=8e-13 Score=103.27 Aligned_cols=110 Identities=27% Similarity=0.207 Sum_probs=70.8
Q ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCcee-Ee
Q 047623 56 TSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE-LL 134 (340)
Q Consensus 56 ~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~-~l 134 (340)
..+|||+||||++.++|.+++++|++|+++|+|+ +++...++.+.. +... +.
T Consensus 4 ~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~~-------------------------~~~~~i~ 56 (116)
T cd02034 4 ITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEVG-------------------------EIKLLLV 56 (116)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhccC-------------------------CceEEEE
Confidence 3479999999999999999999999999999998 232222222111 1111 11
Q ss_pred ecCCCCCCCCCCcch-hhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEE
Q 047623 135 CISKPRSKLPLGFGG-KALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLV 195 (340)
Q Consensus 135 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv 195 (340)
.+..........+.. .....++..+ ....|||+|+||+++++.....++..+|.+++|
T Consensus 57 ~g~~~~~~~g~~~~~n~~~~~~l~~~---~~~~~~~vivDt~ag~e~~~~~~~~~~d~vv~v 115 (116)
T cd02034 57 MGMGRPGGEGCYCPENALLNALLRHL---VLTRDEQVVVDTEAGLEHLGRGTAEGVDLLVVV 115 (116)
T ss_pred ecccccCCCCCEehhhHHHHHHHHHe---EccCCCEEEEecHHHHHHHHhhccccCCEEEEe
Confidence 111111111111111 2334444443 244799999999999999999999999998886
No 67
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.36 E-value=1.2e-11 Score=93.24 Aligned_cols=92 Identities=42% Similarity=0.689 Sum_probs=76.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCcee
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE 132 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 132 (340)
+++. +++|+||||++.++|..+++.|++|+++|
T Consensus 2 ~~~~-g~~G~Gktt~~~~l~~~l~~~g~~v~~~~---------------------------------------------- 34 (99)
T cd01983 2 IVVT-GKGGVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------- 34 (99)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence 4455 55599999999999999999999999999
Q ss_pred EeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH---HHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623 133 LLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF---ITAITPANEAVLVTTPDITSLRDADRV 209 (340)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~---~~~l~~ad~viiv~~~~~~s~~~~~~~ 209 (340)
|+||+|+++..+... ...+..+|.+++|+.++..++....++
T Consensus 35 -----------------------------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 35 -----------------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred -----------------------------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 999999999987777 678889999999999999999999888
Q ss_pred HHHHHh---cCCCceEEEEe
Q 047623 210 TGLLEC---DGIRDIKMVVN 226 (340)
Q Consensus 210 ~~~l~~---~~~~~~~vviN 226 (340)
.+.... .+....++++|
T Consensus 80 ~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 80 TEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred HHHHHHhhccCCceEEEEeC
Confidence 654433 23345666665
No 68
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.36 E-value=5.1e-11 Score=100.22 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=94.1
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEe
Q 047623 55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELL 134 (340)
Q Consensus 55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l 134 (340)
+..++.|+||||++.++|..+++.|.+|+++|+|...+.....+.... . ..++.++
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~-----------~-------------~~~~~~~ 59 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLG-----------E-------------QVGVPVF 59 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhc-----------c-------------cCCeEEE
Confidence 334899999999999999999999999999999987444332221100 0 0233333
Q ss_pred ecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHHHHHH------hcCCeEEEEeCCChhhHHHH
Q 047623 135 CISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGFITAI------TPANEAVLVTTPDITSLRDA 206 (340)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~~~l------~~ad~viiv~~~~~~s~~~~ 206 (340)
+.... .+... .+.+.+......+||+||||+++... ......+ ...|.+++|+++.. .-+..
T Consensus 60 ~~~~~-------~~~~~--~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~-~~~~~ 129 (173)
T cd03115 60 EEGEG-------KDPVS--IAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMT-GQDAV 129 (173)
T ss_pred ecCCC-------CCHHH--HHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCC-ChHHH
Confidence 32111 01111 11122222223479999999999753 2222111 24888899998742 23333
Q ss_pred HHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE
Q 047623 207 DRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG 254 (340)
Q Consensus 207 ~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~ 254 (340)
....+..+..+ ..++|+|+++..... .....+...++.|+..
T Consensus 130 ~~~~~~~~~~~--~~~viltk~D~~~~~----g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 130 NQAKAFNEALG--ITGVILTKLDGDARG----GAALSIRAVTGKPIKF 171 (173)
T ss_pred HHHHHHHhhCC--CCEEEEECCcCCCCc----chhhhhHHHHCcCeEe
Confidence 33333333334 578999999876522 2334577888887753
No 69
>PRK13768 GTPase; Provisional
Probab=99.34 E-value=2.9e-11 Score=107.78 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=90.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
|++++.|. ++||+||||++.+++.++++.|++|++||+|++...+.. .+ ..++.+++ ...+.+......
T Consensus 1 ~~~~i~v~-G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~----~~--~~~i~~~~----~~~~v~~~~~l~ 69 (253)
T PRK13768 1 MMYIVFFL-GTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPY----TP--DFDVRDYV----TAREIMKKYGLG 69 (253)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCC----CC--Ccchhhhe----eHHHHHHHcCCC
Confidence 56677777 559999999999999999999999999999998444322 11 12333332 111111111111
Q ss_pred CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH-----HH---HHHhc--CCeEEEEeCC
Q 047623 129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG-----FI---TAITP--ANEAVLVTTP 198 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~-----~~---~~l~~--ad~viiv~~~ 198 (340)
++..++.+. ........++.+.+... ..|++|+|+|+..... .. ..+.. ++.++.+++.
T Consensus 70 p~~~~~~~~--------~~~~~~~~~l~~~l~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~ 138 (253)
T PRK13768 70 PNGALIASV--------DLLLTKADEIKEEIESL---DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDA 138 (253)
T ss_pred CchHHHHHH--------HHHHHHHHHHHHHHHhc---CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEech
Confidence 332222111 12234455666666553 5799999999954322 11 22222 7888888887
Q ss_pred Chhh----HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 199 DITS----LRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 199 ~~~s----~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.... ......+.............+|+|+.+.-
T Consensus 139 ~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 139 VLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 4322 22221111111111224677899999864
No 70
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=99.33 E-value=3.8e-11 Score=105.77 Aligned_cols=195 Identities=17% Similarity=0.179 Sum_probs=117.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhc-cCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLL-LGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
|++.|.|+++..|+|||+++..|+..|.++|.+|..+.-=.+ +.... -+..+. -..++.........
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~--g~~~~~~~~~~~----D~~~l~~~~~~~~~------ 68 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAK--GSKETPEGLRNK----DALVLQSVSSIELP------ 68 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECcccc--CCccCCCCCchH----HHHHHHHhcCCCCC------
Confidence 456899999999999999999999999999999999743322 11100 001110 01111111111100
Q ss_pred cCceeEeecCCCCC--CCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH------HHHHH-hcCCeEEEEeCC
Q 047623 128 WSNFELLCISKPRS--KLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG------FITAI-TPANEAVLVTTP 198 (340)
Q Consensus 128 ~~~l~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~------~~~~l-~~ad~viiv~~~ 198 (340)
.+.+..++...... ....... ...+.+.+.+ ++++||+||||+++++... ..... ..---+++|+..
T Consensus 69 ~~~~~p~~~~~~~a~~~~~~~i~---~~~i~~~~~~-l~~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~ 144 (231)
T PRK12374 69 YEAVNPIALSEEESSVAHSCPIN---YTLMSNGLAN-LSEKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGI 144 (231)
T ss_pred HHhccCeecCCCcChHHcCCcCC---HHHHHHHHHH-HHhhCCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECC
Confidence 01111111111111 0111111 1334444433 3458999999999854221 11222 223347888888
Q ss_pred ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChH
Q 047623 199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSE 261 (340)
Q Consensus 199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~ 261 (340)
...++..+.-..+.+...+....++|+|++++.... .....+.+.+..+.++++.||+.+.
T Consensus 145 ~lg~in~~lLt~~~l~~~~~~~~gvV~N~~~~~~~~--~~~~~~~l~~~~~~~~lg~iP~~~~ 205 (231)
T PRK12374 145 QEGCINHALLTAQAIANDGLPLIGWVANRINPGLAH--YAEIIDVLGKKLPAPLIGELPYLPR 205 (231)
T ss_pred CcChHHHHHHHHHHHHhCCCcEEEEEEeCccCchhh--hhhHHHHHHHhcCCCEEEEeCCCCC
Confidence 888899999999999998999999999999875422 2223566777788999999998654
No 71
>PRK10867 signal recognition particle protein; Provisional
Probab=99.32 E-value=9.5e-11 Score=111.23 Aligned_cols=164 Identities=19% Similarity=0.236 Sum_probs=98.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
....+|.++ +..|+||||++++||.+++++ |++|++||+|.+.+.....+.. + ..
T Consensus 98 ~~p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~-------~----a~------------ 153 (433)
T PRK10867 98 KPPTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKT-------L----GE------------ 153 (433)
T ss_pred CCCEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHH-------H----Hh------------
Confidence 335666666 799999999999999999998 9999999999974443222100 0 00
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHH------HhcCCeEEEEeC
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGI--DAGFITA------ITPANEAVLVTT 197 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~------l~~ad~viiv~~ 197 (340)
..++.+++.+.. .++..+ ...++... ...||+|||||++.. +...... ....+.+++|++
T Consensus 154 -~~gv~v~~~~~~-------~dp~~i~~~a~~~a~---~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVld 222 (433)
T PRK10867 154 -QIGVPVFPSGDG-------QDPVDIAKAALEEAK---ENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVD 222 (433)
T ss_pred -hcCCeEEecCCC-------CCHHHHHHHHHHHHH---hcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 023333322211 111221 22333332 247999999999965 2222221 124678888888
Q ss_pred CChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 198 PDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 198 ~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
... -..+....+.+.. .....++|+|+.+.+.... .+..+...++.|+.
T Consensus 223 a~~--gq~av~~a~~F~~-~~~i~giIlTKlD~~~rgG----~alsi~~~~~~PI~ 271 (433)
T PRK10867 223 AMT--GQDAVNTAKAFNE-ALGLTGVILTKLDGDARGG----AALSIRAVTGKPIK 271 (433)
T ss_pred ccc--HHHHHHHHHHHHh-hCCCCEEEEeCccCccccc----HHHHHHHHHCcCEE
Confidence 643 1333333333332 3456799999999765322 25577788888866
No 72
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.32 E-value=2.1e-10 Score=105.29 Aligned_cols=165 Identities=15% Similarity=0.202 Sum_probs=96.7
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
+.+.+|+++| ..|+||||++++||..++..|.+|+++|+|.+.......+. ... .
T Consensus 112 ~~~~vi~lvG-pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~-------~~a-----------------~ 166 (318)
T PRK10416 112 KKPFVILVVG-VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQ-------VWG-----------------E 166 (318)
T ss_pred CCCeEEEEEC-CCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHH-------HHH-----------------H
Confidence 4568999995 88899999999999999999999999999986332110000 000 0
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HH----HHHHH--------hcCCeEE
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AG----FITAI--------TPANEAV 193 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~----~~~~l--------~~ad~vi 193 (340)
..++.+++..... .+. ....+.+......+||+|||||+|... .. ...+. ...+.++
T Consensus 167 ~~~i~~~~~~~~~-------dpa--~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~ 237 (318)
T PRK10416 167 RVGVPVIAQKEGA-------DPA--SVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVL 237 (318)
T ss_pred HcCceEEEeCCCC-------CHH--HHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEE
Confidence 0223333322111 010 112222222223479999999999653 11 11111 1366778
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 194 LVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 194 iv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
+|+.... .-..+.+...+.+. ....++|+|+.+..... -....+...++.|+.
T Consensus 238 LVl~a~~-g~~~~~~a~~f~~~--~~~~giIlTKlD~t~~~----G~~l~~~~~~~~Pi~ 290 (318)
T PRK10416 238 LVLDATT-GQNALSQAKAFHEA--VGLTGIILTKLDGTAKG----GVVFAIADELGIPIK 290 (318)
T ss_pred EEEECCC-ChHHHHHHHHHHhh--CCCCEEEEECCCCCCCc----cHHHHHHHHHCCCEE
Confidence 8887763 33444444333322 35678999999976532 234456677788776
No 73
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.30 E-value=1.2e-10 Score=110.52 Aligned_cols=162 Identities=19% Similarity=0.253 Sum_probs=95.7
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
+.+.++.+..|+||||++++||.+++ +.|++|++||+|.+.+.....+.. + ... .
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~----------~-a~~-------------~ 154 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKV----------L-GQQ-------------V 154 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHH----------H-HHh-------------c
Confidence 45555668999999999999999987 679999999999874443221100 0 000 1
Q ss_pred ceeEeecCCCCCCCCCCcchhh-HHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHH------HhcCCeEEEEeCCCh
Q 047623 130 NFELLCISKPRSKLPLGFGGKA-LTWVVEALKSRQEGSPDFILIDCPAGI--DAGFITA------ITPANEAVLVTTPDI 200 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~------l~~ad~viiv~~~~~ 200 (340)
++.++..... ..+.. ....++.+. ...||+|||||++.. +...... ....|.+++|+....
T Consensus 155 gvp~~~~~~~-------~~P~~i~~~al~~~~---~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 155 GVPVFALGKG-------QSPVEIARRALEYAK---ENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred CCceEecCCC-------CCHHHHHHHHHHHHH---hcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 1112211110 01111 122333332 347999999999964 2322222 234788888888642
Q ss_pred hhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 201 TSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 201 ~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
-..+....+.+.. .+...++|+|+.+.+.... .+..+...++.|+.
T Consensus 225 --gq~~~~~a~~f~~-~v~i~giIlTKlD~~~~~G----~~lsi~~~~~~PI~ 270 (428)
T TIGR00959 225 --GQDAVNTAKTFNE-RLGLTGVVLTKLDGDARGG----AALSVRSVTGKPIK 270 (428)
T ss_pred --hHHHHHHHHHHHh-hCCCCEEEEeCccCccccc----HHHHHHHHHCcCEE
Confidence 2344444444432 3456799999998765222 35677788888876
No 74
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=99.30 E-value=3.5e-11 Score=102.97 Aligned_cols=178 Identities=19% Similarity=0.201 Sum_probs=104.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc----CCCcccHHHhhcCCCccccceecc
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE----NRVNYTVVEVLNGDCRLDQALVRD 125 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~ 125 (340)
...-.|.|+||||||||.+++||..+|.-+.+||+|..||. .+++-.|+.+ +....+..+++.-+.+.+..+..-
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPA-HNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~e~~~~ 96 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPA-HNLSDAFSQKFTKTPTKVEGFENLFAMEIDPNVEMGDM 96 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcc-cchHHHHHHHhcCCCccccChhhheeeecCCchhhhhh
Confidence 34556778999999999999999999999999999999998 6665555322 222233333332221111100000
Q ss_pred ccc----CceeEeecCCCCCCCCCC---cc-hhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH-----------------
Q 047623 126 KRW----SNFELLCISKPRSKLPLG---FG-GKALTWVVEALKSRQEGSPDFILIDCPAGIDA----------------- 180 (340)
Q Consensus 126 ~~~----~~l~~l~~~~~~~~~~~~---~~-~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~----------------- 180 (340)
... .+-...-+..-....... ++ .-.+..+++.++.. +||.||+||+|.--.
T Consensus 97 ~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~---~F~~vVFDTAPTGHTLRlL~fP~~lek~lgKl 173 (323)
T KOG2825|consen 97 PEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGM---NFDVVVFDTAPTGHTLRLLQFPTTLEKGLGKL 173 (323)
T ss_pred HHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhcc---ccceEEeccCCCcceehhhccchHHHHHHHHH
Confidence 000 000000000000000000 00 11234445555553 799999999993100
Q ss_pred --------HHH-------------------------HH-------Hh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCC
Q 047623 181 --------GFI-------------------------TA-------IT--PANEAVLVTTPDITSLRDADRVTGLLECDGI 218 (340)
Q Consensus 181 --------~~~-------------------------~~-------l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~ 218 (340)
... .. +. .+...++|+-++..|+..+.|+++.+...++
T Consensus 174 ~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k~~i 253 (323)
T KOG2825|consen 174 LSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAKQGI 253 (323)
T ss_pred HHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHhcCC
Confidence 000 00 00 2366899999999999999999999999999
Q ss_pred CceEEEEecccCC
Q 047623 219 RDIKMVVNRVRTD 231 (340)
Q Consensus 219 ~~~~vviN~~~~~ 231 (340)
+.-.+|+|+.-..
T Consensus 254 dthnIIVNQLL~~ 266 (323)
T KOG2825|consen 254 DTHNIIVNQLLFP 266 (323)
T ss_pred cccceeeeeccCC
Confidence 9889999996543
No 75
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=99.30 E-value=3.6e-11 Score=103.58 Aligned_cols=198 Identities=19% Similarity=0.188 Sum_probs=124.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
|++.+.|+|+--|||||++++.|++++.++|++|....-=.. +.-.... +.+ ...+......... + ..
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqs-G~~~~~~---~~D----~~~l~~~~~~~~~-~---~~ 68 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQT-GSEETAE---NSD----ALVLQRLSGLDLS-Y---EL 68 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceee-CCCCCCC---Cch----HHHHHHhcCCCcc-c---cc
Confidence 578999999999999999999999999999999988643222 1111000 010 0111111111100 0 00
Q ss_pred CceeEe--ecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH------HHHHH-hcCCeEEEEeCCC
Q 047623 129 SNFELL--CISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG------FITAI-TPANEAVLVTTPD 199 (340)
Q Consensus 129 ~~l~~l--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~------~~~~l-~~ad~viiv~~~~ 199 (340)
.+.+.+ |.++........ ..-+...+...+.+. ..+||+|+|..++++..+ +...+ ...--+|+|+...
T Consensus 69 ~~py~f~~P~sPhlAa~~eg-~~I~~~~l~~~l~~l-~~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~ 146 (223)
T COG0132 69 INPYRFKEPLSPHLAAELEG-RTIDLEKLSQGLRQL-LKKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIK 146 (223)
T ss_pred ccceecCCCCCcHHHHhhcC-CcccHHHHHHHHHhh-hcccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCC
Confidence 111111 222222111110 112334445544443 338999999999986332 22222 2244599999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHH
Q 047623 200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEV 262 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~ 262 (340)
..+++++.-..+.++..+++..++|+|++++....... ....+.+.++.++.+.+|+.++.
T Consensus 147 LGtINHtlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~--~~~~l~~~~~~p~~g~~p~~~~~ 207 (223)
T COG0132 147 LGTINHTLLTVEALRARGLPLAGWVANGINPELDHYAE--INATLLKRIGAPLLGIIPYLPES 207 (223)
T ss_pred ccHHHHHHHHHHHHHHCCCCEEEEEEccCCCchhHHHH--HHHHHHHhcCCCccccccCCccc
Confidence 99999999999999999999999999999887532222 23357888999999999987664
No 76
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.28 E-value=9.6e-11 Score=97.83 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=90.3
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeE-
Q 047623 55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFEL- 133 (340)
Q Consensus 55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~- 133 (340)
|++..+|+||||+|.+||..|+++|++|.+++-..+... .. +.+...+.+.+....+.... ..+..
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~-----~~-d~d~~~i~~~~~~~~~~~~~-------~~~~~~ 68 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIE-----KT-NSDALLLQNISGTALDWDEV-------NPYAFA 68 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCC-----CC-chHHHHHHHHcCCCCchhcc-------CCeeeC
Confidence 688999999999999999999999999999754433100 00 00000011111111111110 00000
Q ss_pred eecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH------HHHHHH-hcCCeEEEEeCCChhhHHHH
Q 047623 134 LCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA------GFITAI-TPANEAVLVTTPDITSLRDA 206 (340)
Q Consensus 134 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~~~~~l-~~ad~viiv~~~~~~s~~~~ 206 (340)
.+..+....... -.......+.+.+.+ ++++||+||||++++... .....+ ...+.+|+|+.++..+++.+
T Consensus 69 ~~~~p~~~~~~~-~~~~~~~~i~~~~~~-l~~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~ 146 (166)
T TIGR00347 69 LPLSPHIAADQE-GRPIDLEELSKHLRT-LEQKYDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHT 146 (166)
T ss_pred CCCChHHHHHHh-CCCCCHHHHHHHHHH-HHhcCCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 000000000000 001112233333333 334799999999986431 122222 33667899999999999999
Q ss_pred HHHHHHHHhcCCCceEEEEe
Q 047623 207 DRVTGLLECDGIRDIKMVVN 226 (340)
Q Consensus 207 ~~~~~~l~~~~~~~~~vviN 226 (340)
....+.+++.+.+..++|+|
T Consensus 147 ~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 147 LLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred HHHHHHHHHCCCCeEEEEeC
Confidence 99999999999999999998
No 77
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.25 E-value=3.6e-10 Score=107.52 Aligned_cols=183 Identities=18% Similarity=0.177 Sum_probs=106.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
..+.+|.++ +..|+||||++++||.++.+.|++|++||+|...+.....+. .+.+.
T Consensus 93 ~~p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~-------~la~~---------------- 148 (437)
T PRK00771 93 LKPQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLK-------QLAEK---------------- 148 (437)
T ss_pred CCCeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHH-------HHHHH----------------
Confidence 345677777 689999999999999999999999999999987443211110 00000
Q ss_pred cCceeEeecCCCCCCCCCCcch-hhHHHHHHHHHHhccCCCCEEEEcCCCCCCH--HH------HHHHhcCCeEEEEeCC
Q 047623 128 WSNFELLCISKPRSKLPLGFGG-KALTWVVEALKSRQEGSPDFILIDCPAGIDA--GF------ITAITPANEAVLVTTP 198 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~------~~~l~~ad~viiv~~~ 198 (340)
-++.+...... .+. ......++.+. .+|+|||||+|.... .. ...+..+|.+++|+.+
T Consensus 149 -~gvp~~~~~~~-------~d~~~i~~~al~~~~-----~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda 215 (437)
T PRK00771 149 -IGVPFYGDPDN-------KDAVEIAKEGLEKFK-----KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDA 215 (437)
T ss_pred -cCCcEEecCCc-------cCHHHHHHHHHHHhh-----cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEec
Confidence 01111110000 011 11223333333 379999999996532 11 2234568999999988
Q ss_pred ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE---------EecCChH-H-HHHHh
Q 047623 199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG---------VIPEDSE-V-IRSTN 267 (340)
Q Consensus 199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~---------~Ip~d~~-~-~~a~~ 267 (340)
... ..+....+.+.. ..+..++|+|+++.+.... .+..+...++.|+.. .-|+++. + ...+.
T Consensus 216 ~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~a~~G----~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg 288 (437)
T PRK00771 216 TIG--QQAKNQAKAFHE-AVGIGGIIITKLDGTAKGG----GALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG 288 (437)
T ss_pred ccc--HHHHHHHHHHHh-cCCCCEEEEecccCCCccc----HHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC
Confidence 654 222223333322 2456799999999876332 344677778877652 1355555 3 35555
Q ss_pred cCCceEe
Q 047623 268 RGYPLVL 274 (340)
Q Consensus 268 ~g~~v~~ 274 (340)
.|.....
T Consensus 289 mgd~~~l 295 (437)
T PRK00771 289 MGDLESL 295 (437)
T ss_pred CCChHHH
Confidence 5665443
No 78
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.24 E-value=2.3e-10 Score=110.43 Aligned_cols=170 Identities=19% Similarity=0.205 Sum_probs=101.3
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
|+.|.|+|+++|+||||+++.|+.+|+++|++|..+..+++..+.. +.....+... .
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~------------~~~~~~g~~~-----------~ 59 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPA------------YHTAATGRPS-----------R 59 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHH------------HHHHHhCCCc-----------c
Confidence 5789999999999999999999999999999999998865421111 1111111100 1
Q ss_pred ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH---------HHHHHH--hcCCeEEEEeCC
Q 047623 130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA---------GFITAI--TPANEAVLVTTP 198 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~---------~~~~~l--~~ad~viiv~~~ 198 (340)
+++.. ....+.+...++.+ ..+||++||+...++.. ...... ..+. +|+|+..
T Consensus 60 ~ld~~-----------~~~~~~v~~~~~~~----~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~p-viLV~~~ 123 (451)
T PRK01077 60 NLDSW-----------MMGEELVRALFARA----AQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAP-VVLVVDA 123 (451)
T ss_pred cCCce-----------eCCHHHHHHHHHHh----cccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCC-EEEEECC
Confidence 11110 01223333333333 34799999988854421 122222 3344 6666766
Q ss_pred ChhhHHH--HHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHH
Q 047623 199 DITSLRD--ADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVI 263 (340)
Q Consensus 199 ~~~s~~~--~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~ 263 (340)
+..+... +...+..+ ..+.+..++|+|++.+.. ......+..+..|.+++++||+++.+.
T Consensus 124 ~~~~~~~a~l~~~~~~~-~~~i~i~GvI~N~v~~~~----~~~~l~~~l~~~gipvLG~IP~~~~l~ 185 (451)
T PRK01077 124 SGMAQSAAALVLGFATF-DPDVRIAGVILNRVGSER----HYQLLREALERCGIPVLGALPRDAALA 185 (451)
T ss_pred chHHHHHHHHHHHHHHh-CCCCCEEEEEEECCCChh----HHHHHHHHHHhcCCCEEEEeeCCcccC
Confidence 6544322 22222222 236688999999997542 111223444458999999999998864
No 79
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.23 E-value=7.5e-10 Score=104.58 Aligned_cols=165 Identities=14% Similarity=0.183 Sum_probs=94.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
..+.+|+++ +..|+||||++++||.+++++|++|+++++|.+.++....+..... .
T Consensus 98 ~~~~vi~lv-G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~-----------~------------ 153 (429)
T TIGR01425 98 GKQNVIMFV-GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNAT-----------K------------ 153 (429)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhh-----------c------------
Confidence 345778877 5899999999999999999999999999999985443322210000 0
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH--HHHHHH------hcCCeEEEEeCCC
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA--GFITAI------TPANEAVLVTTPD 199 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~~~~l------~~ad~viiv~~~~ 199 (340)
.++.+...... .+......+.+.......||+|||||++.... ....-+ ...|.+++|+++.
T Consensus 154 -~~vp~~~~~~~---------~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~ 223 (429)
T TIGR01425 154 -ARIPFYGSYTE---------SDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGS 223 (429)
T ss_pred -cCCeEEeecCC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccc
Confidence 11111111000 01111122222222224799999999996522 222211 2367889998874
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
... .+....+.+.+ ....-++|+|+.+....... +..+...++.|+.
T Consensus 224 ~Gq--~a~~~a~~F~~-~~~~~g~IlTKlD~~argG~----aLs~~~~t~~PI~ 270 (429)
T TIGR01425 224 IGQ--AAEAQAKAFKD-SVDVGSVIITKLDGHAKGGG----ALSAVAATKSPII 270 (429)
T ss_pred cCh--hHHHHHHHHHh-ccCCcEEEEECccCCCCccH----HhhhHHHHCCCeE
Confidence 321 11222333332 24567899999998753322 3456677777755
No 80
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.18 E-value=9.9e-10 Score=106.38 Aligned_cols=202 Identities=18% Similarity=0.247 Sum_probs=107.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhh---c-CC---Cccccceecc
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVL---N-GD---CRLDQALVRD 125 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l---~-~~---~~~~~~~~~~ 125 (340)
|.|+|+..++|||++++.|+..|.++|++|..+..-.. ........+... .+-..++ . +. ..+.....+.
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~--~~~s~~~~~~~e-~~~a~~~qa~a~~~~~~~~~nPv~lk~ 77 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNM--SLNSFVTKEGGE-IAIAQATQALAAGIEPSVHMNPILLKP 77 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCccc--ccCccccCCCch-hHHHHHHHHHhCCCCchhccCCEEeCc
Confidence 57899999999999999999999999999998755311 111111111000 1111111 1 11 1112222221
Q ss_pred cccCceeEeecCCCCCCCCC--Cc---chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH----------HHHHHHhcCC
Q 047623 126 KRWSNFELLCISKPRSKLPL--GF---GGKALTWVVEALKSRQEGSPDFILIDCPAGIDA----------GFITAITPAN 190 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~--~~---~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~----------~~~~~l~~ad 190 (340)
.......++..+........ .. ....+..+.+.+.+ +..+||+||||+++++.. ...+.+..++
T Consensus 78 ~~~~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~-l~~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~ap 156 (475)
T TIGR00313 78 KGNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEI-LAREYDYVVIEGAGSPAEINLLKRDLANMRIAELANAD 156 (475)
T ss_pred CCCCcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHH-HHhcCCEEEEECCCCccccccCcCCchHHHHHHHhCCC
Confidence 10001122222221111100 00 01223444444433 345799999999986532 1122344567
Q ss_pred eEEEEeCCChh-hHHHHHHHHHHHHhc-CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChH
Q 047623 191 EAVLVTTPDIT-SLRDADRVTGLLECD-GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSE 261 (340)
Q Consensus 191 ~viiv~~~~~~-s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~ 261 (340)
. |+|+..+.. .+..+..+++.++.. +....++|+|++.++... .....+.+++.+|.++++++|+++.
T Consensus 157 V-ILV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~~--~~~~~~~l~e~~gipvLG~ip~~~~ 226 (475)
T TIGR00313 157 A-ILVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNVDV--LKSGIEKLEELTGIPVLGVLPYDEN 226 (475)
T ss_pred E-EEEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcHHH--HHHHHHHHHHhhCCCEEEEecCCCc
Confidence 4 555666544 334555566665543 256789999999875311 1123456677789999999998753
No 81
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=99.17 E-value=3.4e-10 Score=97.42 Aligned_cols=185 Identities=21% Similarity=0.257 Sum_probs=108.6
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN 130 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 130 (340)
|.|.|+++..|+|||+++..|+.+|.++|.+|.++--=.+... .+.+...+..+........ .
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~-------~d~d~~~~~~~~~~~~~~~----------~ 63 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPE-------DDEDAELIRELFGLSEPPD----------D 63 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCC-------CSSHHHHHHHHCCTCCCHH----------H
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCC-------CCchHHHHHHHhCCCcccc----------c
Confidence 5789999999999999999999999999999987654222111 0110011111111111100 0
Q ss_pred eeEeecCCCCCC--CCC-CcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH------HHHHHHh--cCCeEEEEeCCC
Q 047623 131 FELLCISKPRSK--LPL-GFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA------GFITAIT--PANEAVLVTTPD 199 (340)
Q Consensus 131 l~~l~~~~~~~~--~~~-~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~~~~~l~--~ad~viiv~~~~ 199 (340)
...+........ ... .-....+.+++ .+.+.+++|++||++.++... ....... .+ -+|+|+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~l~~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~a-~vIlV~~~~ 139 (199)
T PF13500_consen 64 PSPYTFDEPASPHLAAELEGVDIDLERII---YKELAEEYDVVLVEGAGGLMVPIFSGDLNADIAKALGA-PVILVASGR 139 (199)
T ss_dssp HECEEESSSS-HHHHHHHHT----HHHHH---HHHCHTTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESS
T ss_pred ccccccCcccCHHHHhhccCCcccHHHHH---HHHHhhcCCEEEEeCCcccCcccccChHHHHHHHHcCC-CEEEEeCCC
Confidence 000000000000 000 00001122332 122445899999999986531 1222222 34 378888888
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHH
Q 047623 200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVI 263 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~ 263 (340)
..+++++...++.+...+.+..++|+|++... ...+.+.+..+.++++.||+++.+.
T Consensus 140 ~g~i~~~l~~~~~~~~~g~~v~GvI~N~~~~~-------~~~~~l~~~~~i~vlg~iP~~~~L~ 196 (199)
T PF13500_consen 140 LGTINHTLLTIEALKQRGIRVLGVILNRVPEP-------ENLEALREKSGIPVLGVIPEDPDLS 196 (199)
T ss_dssp TTHHHHHHHHHHHHHCTTS-EEEEEEEECTCC-------HHHHHHHHHHCCEECE---SSTT--
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEEECCCCH-------HHHHHHHHhCCCCEEEECCCCcccc
Confidence 89999999999999988999999999998665 2577888999999999999998864
No 82
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.15 E-value=3.1e-09 Score=98.13 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=98.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
...++++++|.+ |+||||++++||..+.++|++|++|++|++..+....+. .+ ..
T Consensus 204 ~~~~ii~lvGpt-GvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk----------~y----ae---------- 258 (407)
T PRK12726 204 SNHRIISLIGQT-GVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQ----------GY----AD---------- 258 (407)
T ss_pred cCCeEEEEECCC-CCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHH----------HH----hh----------
Confidence 456899999875 999999999999999999999999999998443221110 00 00
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHHH------hcCCeEEEEeCCC
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFITAI------TPANEAVLVTTPD 199 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~l------~~ad~viiv~~~~ 199 (340)
..++.+... .++..+...++.+.. ..+||+|||||++.. +.....-+ ...|.+++|..+.
T Consensus 259 ~lgvpv~~~----------~dp~dL~~al~~l~~--~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag 326 (407)
T PRK12726 259 KLDVELIVA----------TSPAELEEAVQYMTY--VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG 326 (407)
T ss_pred cCCCCEEec----------CCHHHHHHHHHHHHh--cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc
Confidence 011111110 123444455555542 136999999999964 22222211 1346667776653
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
. ....+..+.+.+. ....-++|+++.+... ..-.+..+...++.|+.
T Consensus 327 ~-~~~d~~~i~~~f~--~l~i~glI~TKLDET~----~~G~~Lsv~~~tglPIs 373 (407)
T PRK12726 327 M-KSADVMTILPKLA--EIPIDGFIITKMDETT----RIGDLYTVMQETNLPVL 373 (407)
T ss_pred c-cHHHHHHHHHhcC--cCCCCEEEEEcccCCC----CccHHHHHHHHHCCCEE
Confidence 3 2233334444333 3456789999999876 33345567778888876
No 83
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.12 E-value=5.2e-09 Score=96.99 Aligned_cols=168 Identities=18% Similarity=0.201 Sum_probs=103.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCC-chhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRN-LDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~-l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
..++|++.|. +|+||||+++.||..+..+|++|+++++|.+... ...+-. ..+
T Consensus 240 ~~~vI~LVGp-tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~--------yae----------------- 293 (436)
T PRK11889 240 EVQTIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQD--------YVK----------------- 293 (436)
T ss_pred CCcEEEEECC-CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH--------Hhh-----------------
Confidence 3578888866 9999999999999999999999999999987321 111100 000
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHH----HHHHh--cCCeEEEEeCCC
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGF----ITAIT--PANEAVLVTTPD 199 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~----~~~l~--~ad~viiv~~~~ 199 (340)
..++.+... .++..+...++.+.+ ..+||+|||||++... ... ...+. ..+.+++|+.+.
T Consensus 294 ~lgipv~v~----------~d~~~L~~aL~~lk~--~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT 361 (436)
T PRK11889 294 TIGFEVIAV----------RDEAAMTRALTYFKE--EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS 361 (436)
T ss_pred hcCCcEEec----------CCHHHHHHHHHHHHh--ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc
Confidence 012222211 123344445555543 1259999999999542 221 22222 356778887654
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE-----EecCChH
Q 047623 200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG-----VIPEDSE 261 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~-----~Ip~d~~ 261 (340)
.. -+.+...++.+.. ...-++|+++.+... ..-.+..+...++.|+.. .||+|-.
T Consensus 362 tk-~~d~~~i~~~F~~--~~idglI~TKLDET~----k~G~iLni~~~~~lPIsyit~GQ~VPeDI~ 421 (436)
T PRK11889 362 MK-SKDMIEIITNFKD--IHIDGIVFTKFDETA----SSGELLKIPAVSSAPIVLMTDGQDVKKNIH 421 (436)
T ss_pred cC-hHHHHHHHHHhcC--CCCCEEEEEcccCCC----CccHHHHHHHHHCcCEEEEeCCCCCCcchh
Confidence 32 2344455555554 456789999999876 233455677778888662 3666644
No 84
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.11 E-value=3.7e-09 Score=84.96 Aligned_cols=121 Identities=24% Similarity=0.339 Sum_probs=93.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecC
Q 047623 58 GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCIS 137 (340)
Q Consensus 58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 137 (340)
++| +|||+++..|+..|.++|.+|..++...+
T Consensus 7 ~~~-~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~----------------------------------------------- 38 (134)
T cd03109 7 GTD-IGKTVATAILARALKEKGYRVAPLKPVQT----------------------------------------------- 38 (134)
T ss_pred CCC-cCHHHHHHHHHHHHHHCCCeEEEEecCCC-----------------------------------------------
Confidence 455 99999999999999999999999866643
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH------HHHHHHhcCC-eEEEEeCCChhhHHHHHHHH
Q 047623 138 KPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA------GFITAITPAN-EAVLVTTPDITSLRDADRVT 210 (340)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~~~~~l~~ad-~viiv~~~~~~s~~~~~~~~ 210 (340)
+|++||++++++.. .....+...+ -+++|++++..++..+...+
T Consensus 39 -----------------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~ 89 (134)
T cd03109 39 -----------------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTI 89 (134)
T ss_pred -----------------------------CCEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHH
Confidence 57777777765421 1223333222 38899999989999999999
Q ss_pred HHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEec
Q 047623 211 GLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIP 257 (340)
Q Consensus 211 ~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip 257 (340)
+.++..+....+++.|++...... ...+.+.+++.++.++++.||
T Consensus 90 ~~l~~~g~~i~gvi~N~~~~~~~~--~~~~~~~i~~~~gip~LG~IP 134 (134)
T cd03109 90 EAARIKGIILNGVLGNVIVEKEGL--ATLNVETIERLTGIPVLGIVP 134 (134)
T ss_pred HHHHhcCCceeEEEEccCCCccch--hhhhHHHHHHhcCCCEEEeCC
Confidence 999999999999999998875421 114577889999999999987
No 85
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.08 E-value=7.3e-09 Score=94.82 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=92.0
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceec
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVR 124 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 124 (340)
..+.+++|.|+ +.+|+||||++..|+..+.++|++|.+|++|++.+... .+++ ...++.+..
T Consensus 30 ~~~~~~~i~i~-G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~--------------~~~~~~~~~-- 92 (300)
T TIGR00750 30 YTGNAHRVGIT-GTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILG--------------DRTRMQRLA-- 92 (300)
T ss_pred ccCCceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcc--------------cchhhhhcc--
Confidence 34567888888 88999999999999999999999999999999743221 1111 111111100
Q ss_pred ccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHH
Q 047623 125 DKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLR 204 (340)
Q Consensus 125 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~ 204 (340)
..++..+.+.+...... ........+++.+.. .+||+|||||++ ........+..+|.++++..+.. -.
T Consensus 93 --~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~---~g~D~viidT~G-~~~~e~~i~~~aD~i~vv~~~~~--~~ 161 (300)
T TIGR00750 93 --TDPGAFIRSMPTRGHLG---GLSQATRELILLLDA---AGYDVIIVETVG-VGQSEVDIANMADTFVVVTIPGT--GD 161 (300)
T ss_pred --cCCCceeeecCcccccc---chhHHHHHHHHHHHh---CCCCEEEEeCCC-CchhhhHHHHhhceEEEEecCCc--cH
Confidence 01233332222211100 011233445555544 479999999996 34444567788999888875542 23
Q ss_pred HHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 205 DADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+..+.+.+.. ....+++|+.+..
T Consensus 162 el~~~~~~l~~---~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 162 DLQGIKAGLME---IADIYVVNKADGE 185 (300)
T ss_pred HHHHHHHHHhh---hccEEEEEccccc
Confidence 33333333322 1236999999864
No 86
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.07 E-value=5.6e-09 Score=99.61 Aligned_cols=157 Identities=22% Similarity=0.203 Sum_probs=88.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLA--RLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
+++++|.|. +|+||||++++||..++ +.|++|++||+|++.......+ ....+.
T Consensus 221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL-------~~~a~~---------------- 276 (424)
T PRK05703 221 GGVVALVGP-TGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQL-------KTYAKI---------------- 276 (424)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHH-------HHHHHH----------------
Confidence 568888855 99999999999999998 4589999999998732111000 000000
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CH----HHHHHHhcCC---eEEEEeCC
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DA----GFITAITPAN---EAVLVTTP 198 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~----~~~~~l~~ad---~viiv~~~ 198 (340)
-++.+... .....+...++.+. .||+||||+++.. +. .....+..++ .+++|+..
T Consensus 277 -~~vp~~~~----------~~~~~l~~~l~~~~-----~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a 340 (424)
T PRK05703 277 -MGIPVEVV----------YDPKELAKALEQLR-----DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSA 340 (424)
T ss_pred -hCCceEcc----------CCHHhHHHHHHHhC-----CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEEC
Confidence 11111100 11122333333332 5999999999854 21 1223333222 34444443
Q ss_pred ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
. .....+.++.+.+...+ .-++|+++++... ..-.+..+....+.++.
T Consensus 341 ~-~~~~~l~~~~~~f~~~~--~~~vI~TKlDet~----~~G~i~~~~~~~~lPv~ 388 (424)
T PRK05703 341 T-TKYEDLKDIYKHFSRLP--LDGLIFTKLDETS----SLGSILSLLIESGLPIS 388 (424)
T ss_pred C-CCHHHHHHHHHHhCCCC--CCEEEEecccccc----cccHHHHHHHHHCCCEE
Confidence 2 23344444555554433 3589999999865 22345566677777766
No 87
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.07 E-value=8e-09 Score=99.23 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=91.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL--GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD 125 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 125 (340)
+.+++|+|+| .+|+||||++.+||..++++ |++|.++++|.+..+....+ .....
T Consensus 348 ~~G~vIaLVG-PtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQL--------------k~ya~-------- 404 (559)
T PRK12727 348 ERGGVIALVG-PTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQL--------------HSYGR-------- 404 (559)
T ss_pred cCCCEEEEEC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHH--------------HHhhc--------
Confidence 4568999995 57999999999999998875 58999999998632211111 00000
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHHH-------HHHhcCCeEEEEe
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGFI-------TAITPANEAVLVT 196 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~-------~~l~~ad~viiv~ 196 (340)
.-++.+.. ......+...++.+. +||+||||+++... .... ......+.++++.
T Consensus 405 --iLgv~v~~----------a~d~~~L~~aL~~l~-----~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpA 467 (559)
T PRK12727 405 --QLGIAVHE----------ADSAESLLDLLERLR-----DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPA 467 (559)
T ss_pred --ccCceeEe----------cCcHHHHHHHHHHhc-----cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEEC
Confidence 01111110 011223344444443 59999999999542 1111 1123355666666
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 197 TPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 197 ~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
......+. .+++.+.. ....++|+|+++.... .-....+....++++.
T Consensus 468 tss~~Dl~---eii~~f~~--~~~~gvILTKlDEt~~----lG~aLsv~~~~~LPI~ 515 (559)
T PRK12727 468 NAHFSDLD---EVVRRFAH--AKPQGVVLTKLDETGR----FGSALSVVVDHQMPIT 515 (559)
T ss_pred CCChhHHH---HHHHHHHh--hCCeEEEEecCcCccc----hhHHHHHHHHhCCCEE
Confidence 65444444 44444443 2457899999988652 2234456666777665
No 88
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.04 E-value=1.8e-09 Score=99.99 Aligned_cols=176 Identities=22% Similarity=0.270 Sum_probs=105.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCce
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNF 131 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 131 (340)
.|.+.++..|+||||++..|..+|+++|.+|--+...|++-+-.++.-....+..+|..++-+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~atG~~srNLD~~mm~----------------- 64 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHTAATGRPSRNLDSWMMG----------------- 64 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCchhhhHhhCCccCCCchhhcC-----------------
Confidence 478899999999999999999999999999998888876544332222222222333222222
Q ss_pred eEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC-----------CHHHHHHHhcCCeEEEEeCCCh
Q 047623 132 ELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI-----------DAGFITAITPANEAVLVTTPDI 200 (340)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~-----------~~~~~~~l~~ad~viiv~~~~~ 200 (340)
.+.+.++...-.+ +.|+.||..--++ +....+-+..+- ||+|++...
T Consensus 65 -----------------~~~v~~~f~~~~~----~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~P-VvLVid~~~ 122 (451)
T COG1797 65 -----------------EEGVRALFARAAA----DADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAP-VVLVVDASG 122 (451)
T ss_pred -----------------HHHHHHHHHHhcC----CCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCC-EEEEEeCcc
Confidence 2333333333322 4666666544322 122233333344 667777665
Q ss_pred hhHHHHHHHHHHHHh-cCCCceEEEEecccCCcccccccccHHHHHH-HhCCceeEEecCChHHH-HHHhcCC
Q 047623 201 TSLRDADRVTGLLEC-DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQE-MLGLALLGVIPEDSEVI-RSTNRGY 270 (340)
Q Consensus 201 ~s~~~~~~~~~~l~~-~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~-~~g~~v~~~Ip~d~~~~-~a~~~g~ 270 (340)
.+-..+.-+.-+-.- .+++..|||+||+.++. +..-.++..+ .++++++++||+++.+. .....|.
T Consensus 123 ~s~S~AAiv~G~~~fdp~v~iaGVIlNrVgser----H~~llr~Ale~~~gv~vlG~lpr~~~l~lp~RHLGL 191 (451)
T COG1797 123 LSRSVAAIVKGFKHFDPDVNIAGVILNRVGSER----HYELLRDALEEYTGVPVLGYLPRDDDLELPSRHLGL 191 (451)
T ss_pred hhHHHHHHHHHHHhcCCCCceEEEEEecCCCHH----HHHHHHHHhhhcCCCcEEEEecCCcccCCccccccc
Confidence 554444333332221 25678999999998865 3333444444 47899999999999854 3334444
No 89
>PRK00784 cobyric acid synthase; Provisional
Probab=99.04 E-value=1.2e-08 Score=99.57 Aligned_cols=204 Identities=18% Similarity=0.217 Sum_probs=107.9
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC-CCccccceecccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG-DCRLDQALVRDKR 127 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~ 127 (340)
|++.|.|+|+..|+|||++++.|+..|+++|++|..+.. ........-+.+... ..-..++.. ....... ..
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp--v~~~~~~~~~~dg~~-~~Da~~l~~~~~~~~~~----~~ 73 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA--QNMSLNSAVTADGGE-IGRAQALQAEAAGVEPS----VD 73 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc--hhccccceECCCCCe-eHHHHHHHHHhCCCCch----hc
Confidence 477899999999999999999999999999999987744 211111000000000 000011110 0000000 00
Q ss_pred cCceeEeecCCCCC----------CCCC----CcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--------HHHHHH
Q 047623 128 WSNFELLCISKPRS----------KLPL----GFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--------AGFITA 185 (340)
Q Consensus 128 ~~~l~~l~~~~~~~----------~~~~----~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--------~~~~~~ 185 (340)
.+...+-|..+... ..+. .-.......+.+.+.. +.++||++||+..+++. .....+
T Consensus 74 i~P~~~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~-l~~~~D~vIVEGaGg~~~~~L~~~~~~~~dl 152 (488)
T PRK00784 74 MNPVLLKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDR-LAAEYDVVVVEGAGSPAEINLRDRDIANMGF 152 (488)
T ss_pred cCCEEecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHH-HHhcCCEEEEECCCCccccCcccCCchhHHH
Confidence 01111112111110 0000 0011223344444433 34479999999885432 112233
Q ss_pred HhcCC-eEEEEeCCChh-hHHHHHHHHHHHHhc-CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHH
Q 047623 186 ITPAN-EAVLVTTPDIT-SLRDADRVTGLLECD-GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEV 262 (340)
Q Consensus 186 l~~ad-~viiv~~~~~~-s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~ 262 (340)
+...+ -||+|+..+.. ++..+....+.+... +.+..++|+|++.++.. ......+.+.+..+.++++.||+++.+
T Consensus 153 ak~l~~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~--~~~~~~~~l~~~~gipvLG~iP~~~~L 230 (488)
T PRK00784 153 AEAADAPVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDIS--LLEPGLDWLEELTGVPVLGVLPYLDDL 230 (488)
T ss_pred HHHcCCCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHH--HHHHHHHHHHHhcCCCEEEEcCCCcCC
Confidence 33222 26666666544 466666555666533 45789999999987521 111234457777899999999998663
No 90
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=99.04 E-value=2e-09 Score=96.55 Aligned_cols=202 Identities=12% Similarity=0.068 Sum_probs=113.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
|++|+|.|.| |+||||++.+|+..|+++| +|++|+.|+.... .. ++.+-.......... ..... +
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~-----~~---~g~Ds~~~~~aGa~~--v~~~s---~ 65 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSGRG-RVGTVKHMDTERL-----NP---DGTDTGRHFDAGADV--VYGLT---D 65 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcC-----CC---CCCCcHHHHHCCCcE--EEEec---C
Confidence 5799999886 9999999999999999999 8999999986211 10 111111111111110 00000 1
Q ss_pred ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH--HHHHHHhcCC-eEEEEeCCChhhHHHH
Q 047623 130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA--GFITAITPAN-EAVLVTTPDITSLRDA 206 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~~~~l~~ad-~viiv~~~~~~s~~~~ 206 (340)
+-.++- .....+..+++.+. .++|+||||+...... .....+..+| .+++|..|+..+ +
T Consensus 66 ~~~~~~-----------~~~~~l~~~l~~l~----~~~D~vlVEG~k~~~~pki~v~~~~~~~~~~l~p~~~s~~d---~ 127 (274)
T PRK14493 66 GEWVAS-----------GRDRSLDDALDDLA----PGMDYAVVEGFKDSRLPKVVLGDMDADSDVVARAPTAADLD---T 127 (274)
T ss_pred CeEEEE-----------ecCCCHHHHHHhhC----cCCCEEEEECCCCCCCCEEEEEecccCCcEEEecCCCCccC---H
Confidence 111110 01123444454443 2699999999997642 2233445677 899999988887 4
Q ss_pred HHHHHHHHhcCC-CceEEEEecccCCcccccccccHHHHHHHhC--CceeEEecCChHHHHHHhcCCceEeeCCC-CHHH
Q 047623 207 DRVTGLLECDGI-RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLG--LALLGVIPEDSEVIRSTNRGYPLVLNKPP-TLAG 282 (340)
Q Consensus 207 ~~~~~~l~~~~~-~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g--~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~-s~~~ 282 (340)
..+++.+++..- -.+..++|++........ .| ..+.+.+-... .....+....++... ..+.
T Consensus 128 ~~lve~~~~~~~~l~~~~li~~~~~~~~~~~-----------~GAi~~F~G~VR~r~---~~~g~~v~~L~ye~y~~~A~ 193 (274)
T PRK14493 128 EDLVAALESQPPYVTLESLVAKVKRSPDADK-----------AGAIATFTGRVRAKE---DADDEPTEYLEFEKYDGVAD 193 (274)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhccCCCCC-----------CcEEEEEEeEEEccc---cCCCCcEEEEEEEeCCHHHH
Confidence 445555554322 134456666653210000 02 12335554211 122445556666443 3678
Q ss_pred HHHHHHHHHHHhcccc
Q 047623 283 LAFEQAAWRLVEQDSM 298 (340)
Q Consensus 283 ~~~~~la~~i~~~~~~ 298 (340)
+.+.+|++++..+.+.
T Consensus 194 ~~l~~I~~e~~~~~~~ 209 (274)
T PRK14493 194 ERMAAIREELKQRDGV 209 (274)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999998887643
No 91
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.99 E-value=9e-09 Score=91.05 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=99.8
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceecc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVRD 125 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 125 (340)
.++..+|+|+ +-+|+||||+.-.|...|.++|++|.++--||+++-.. .++| +..++.+..
T Consensus 48 tG~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG--------------DRiRM~~~~--- 109 (323)
T COG1703 48 TGNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG--------------DRIRMQRLA--- 109 (323)
T ss_pred CCCCcEEEec-CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc--------------cHhhHHhhc---
Confidence 4677899999 78899999999999999999999999999999854432 3333 222222221
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhH-H
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSL-R 204 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~-~ 204 (340)
..+++++-+.+........ +......+..+... .||+|||.|-+- +.....+...+|.+++++.|+..+- .
T Consensus 110 -~~~~vFiRs~~srG~lGGl---S~at~~~i~~ldAa---G~DvIIVETVGv-GQsev~I~~~aDt~~~v~~pg~GD~~Q 181 (323)
T COG1703 110 -VDPGVFIRSSPSRGTLGGL---SRATREAIKLLDAA---GYDVIIVETVGV-GQSEVDIANMADTFLVVMIPGAGDDLQ 181 (323)
T ss_pred -cCCCeEEeecCCCccchhh---hHHHHHHHHHHHhc---CCCEEEEEecCC-CcchhHHhhhcceEEEEecCCCCcHHH
Confidence 1277777665554332221 23344555555553 899999999772 2223555677999999999976543 2
Q ss_pred HHHH-HHHHHHhcCCCceEEEEecccCCc
Q 047623 205 DADR-VTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 205 ~~~~-~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
..+. +++.- =.+|+|+.+...
T Consensus 182 ~iK~GimEia-------Di~vINKaD~~~ 203 (323)
T COG1703 182 GIKAGIMEIA-------DIIVINKADRKG 203 (323)
T ss_pred HHHhhhhhhh-------heeeEeccChhh
Confidence 2221 11111 138999998643
No 92
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.99 E-value=3.1e-09 Score=107.55 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=105.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
|++.|.|+++..|+|||+++..|+.+|.++|.+|..+.-..+ +. .+...... . ...
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~-~p------------~~~~~~~~-------~-~~~--- 56 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQ-PP------------LTMSEVEA-------L-LAS--- 56 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCccc-CC------------CCHHHHHH-------H-Hhc---
Confidence 467899999999999999999999999999999999874443 10 01111100 0 000
Q ss_pred CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH------HHHHH-hcCCeEEEEeCCChh
Q 047623 129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG------FITAI-TPANEAVLVTTPDIT 201 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~------~~~~l-~~ad~viiv~~~~~~ 201 (340)
. -....+..+++.+.+ +..+||+||||++.+.... ..... ...+-+++|+.++..
T Consensus 57 ~-----------------~~~~~~~~I~~~~~~-l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~~ 118 (684)
T PRK05632 57 G-----------------QLDELLEEIVARYHA-LAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGND 118 (684)
T ss_pred c-----------------CChHHHHHHHHHHHH-hccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCCC
Confidence 0 001233455555544 4458999999999754321 11122 224668888888877
Q ss_pred hHHH----HHHHHHHHH-hcCCCceEEEEec--ccCCcccccccccH--------------HHHHHHhCCceeEEecCCh
Q 047623 202 SLRD----ADRVTGLLE-CDGIRDIKMVVNR--VRTDMIKGEDMMSV--------------LDIQEMLGLALLGVIPEDS 260 (340)
Q Consensus 202 s~~~----~~~~~~~l~-~~~~~~~~vviN~--~~~~~~~~~~~~~~--------------~~i~~~~g~~v~~~Ip~d~ 260 (340)
++.. +....+.+. ..+.+.+++|+|+ +++.. .......+ .......+++++++||+++
T Consensus 119 si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~ 197 (684)
T PRK05632 119 TPEELAERIELAASSFGGAKNANILGVIINKLNAPVDE-QGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSP 197 (684)
T ss_pred ChHHHHHHHHHHHHHhccCCCCcEEEEEEECCCCCHHH-HHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCcc
Confidence 6543 344444444 4567899999999 55442 11100001 1122345788999999998
Q ss_pred HHH
Q 047623 261 EVI 263 (340)
Q Consensus 261 ~~~ 263 (340)
.+.
T Consensus 198 ~L~ 200 (684)
T PRK05632 198 DLI 200 (684)
T ss_pred ccC
Confidence 764
No 93
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.98 E-value=2.2e-08 Score=92.89 Aligned_cols=164 Identities=18% Similarity=0.261 Sum_probs=100.0
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
.+.+.+|.+. +=.|+||||+|.-||.+|.++|++|+++-+|...+..-.-+.. + ..
T Consensus 97 ~~~P~vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~-------L----a~------------ 152 (451)
T COG0541 97 KKPPTVILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQ-------L----AE------------ 152 (451)
T ss_pred CCCCeEEEEE-eccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHH-------H----HH------------
Confidence 3445666666 5667899999999999999999999999999985553322110 0 00
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHH------HHhcCCeEEEEeCC
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFIT------AITPANEAVLVTTP 198 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~------~l~~ad~viiv~~~ 198 (340)
.-++.+++.+.. ...+....+.+.......||+|||||++.. +..... .....|.+++|++.
T Consensus 153 -q~~v~~f~~~~~---------~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 153 -QVGVPFFGSGTE---------KDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred -HcCCceecCCCC---------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 022333322111 112222333333333357999999999955 332222 22357889999887
Q ss_pred C--hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 199 D--ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 199 ~--~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
. ......+..+-+ .+...++|+++.+.+..+... ..+...+|.|+-
T Consensus 223 m~GQdA~~~A~aF~e-----~l~itGvIlTKlDGdaRGGaA----LS~~~~tg~PIk 270 (451)
T COG0541 223 MIGQDAVNTAKAFNE-----ALGITGVILTKLDGDARGGAA----LSARAITGKPIK 270 (451)
T ss_pred ccchHHHHHHHHHhh-----hcCCceEEEEcccCCCcchHH----HhhHHHHCCCeE
Confidence 3 334444444433 345688999999988744443 356677886644
No 94
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.97 E-value=4.2e-08 Score=90.20 Aligned_cols=152 Identities=18% Similarity=0.181 Sum_probs=90.7
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceecc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVRD 125 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 125 (340)
.+...+|.|+ +..|+||||++..|+..+.++|++|.++..|++++... ..+| +..++.+ .
T Consensus 53 ~~~~~~igi~-G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallg--------------d~~r~~~----~ 113 (332)
T PRK09435 53 TGNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILG--------------DKTRMER----L 113 (332)
T ss_pred CCCcEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhc--------------hHhHHHh----h
Confidence 3556789988 55899999999999999999999999999999843321 1121 1111110 0
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeC-CChhhHH
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTT-PDITSLR 204 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~-~~~~s~~ 204 (340)
...++..+...+...... -........++.+.. ..||+|||||++..... ..+...||.+++|+. +...++.
T Consensus 114 ~~~~~~~~r~~~~~~~l~---~~a~~~~~~~~~~~~---~g~d~viieT~Gv~qs~-~~i~~~aD~vlvv~~p~~gd~iq 186 (332)
T PRK09435 114 SRHPNAFIRPSPSSGTLG---GVARKTRETMLLCEA---AGYDVILVETVGVGQSE-TAVAGMVDFFLLLQLPGAGDELQ 186 (332)
T ss_pred cCCCCeEEEecCCccccc---chHHHHHHHHHHHhc---cCCCEEEEECCCCccch-hHHHHhCCEEEEEecCCchHHHH
Confidence 111333333222111000 011233344444433 47999999999955332 335678999999986 4555565
Q ss_pred HHHH-HHHHHHhcCCCceEEEEecccCC
Q 047623 205 DADR-VTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 205 ~~~~-~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.... .++..+ .+|+|+++..
T Consensus 187 ~~k~gi~E~aD-------IiVVNKaDl~ 207 (332)
T PRK09435 187 GIKKGIMELAD-------LIVINKADGD 207 (332)
T ss_pred HHHhhhhhhhh-------eEEeehhccc
Confidence 5443 222221 5999999854
No 95
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.95 E-value=2.5e-08 Score=96.16 Aligned_cols=169 Identities=20% Similarity=0.252 Sum_probs=98.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCcee
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE 132 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 132 (340)
|.|+++.+|+|||++++.|+.+|+++|++|..+...+... + ..+.....+... .+++
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~--------D----~~~~~~~~g~~~-----------~~ld 58 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYI--------D----PMFHTQATGRPS-----------RNLD 58 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCC--------C----HHHHHHHhCCch-----------hhCC
Confidence 7899999999999999999999999999999997643210 0 011111111000 1111
Q ss_pred EeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC---------HHHHHHHhcCC-eEEEEeCCChhh
Q 047623 133 LLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID---------AGFITAITPAN-EAVLVTTPDITS 202 (340)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~---------~~~~~~l~~ad-~viiv~~~~~~s 202 (340)
. ...+ ...+.+.+.+ +..++|++||....++- ..........+ -||+|+.....
T Consensus 59 ~-----------~~~~---~~~i~~~~~~-~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~~- 122 (449)
T TIGR00379 59 S-----------FFMS---EAQIQECFHR-HSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQRL- 122 (449)
T ss_pred c-----------ccCC---HHHHHHHHHH-hcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCchH-
Confidence 0 0012 2334444433 23479999999986542 12333333322 36666665421
Q ss_pred HHHHHHHHHHH--HhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHH
Q 047623 203 LRDADRVTGLL--ECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVI 263 (340)
Q Consensus 203 ~~~~~~~~~~l--~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~ 263 (340)
...+..+...+ ...+.+..++|+|++.+... .......+++..+.+++++||+++.+.
T Consensus 123 ~~t~~al~~~~~~~~~~i~i~GvIlN~v~~~~~---~~~~~~~i~~~~gipvLG~IP~~~~l~ 182 (449)
T TIGR00379 123 SRSAAAIVLGYRSFDPGVKLKGVILNRVGSERH---LEKLKIAVEPLRGIPILGVIPRQQDLK 182 (449)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEECCCCHHH---HHHHHHHHHHhCCCCEEEEecCccccC
Confidence 12222222112 12367789999999986431 112345666778999999999998763
No 96
>PRK14974 cell division protein FtsY; Provisional
Probab=98.95 E-value=2.9e-08 Score=91.49 Aligned_cols=164 Identities=22% Similarity=0.283 Sum_probs=92.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
.+.+|.|+ +..|+||||++++||.++.+.|++|+++++|.........+. ...+.
T Consensus 139 ~~~vi~~~-G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~-------~~a~~----------------- 193 (336)
T PRK14974 139 KPVVIVFV-GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLE-------EHAER----------------- 193 (336)
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHH-------HHHHH-----------------
Confidence 45677777 599999999999999999999999999999975332211110 00000
Q ss_pred CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHHH------hcCCeEEEEeCCCh
Q 047623 129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFITAI------TPANEAVLVTTPDI 200 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~l------~~ad~viiv~~~~~ 200 (340)
-++.++..... ......+.+.+......+||+|||||++.. +.....-| ...|.+++|+....
T Consensus 194 lgv~v~~~~~g---------~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~ 264 (336)
T PRK14974 194 LGVKVIKHKYG---------ADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA 264 (336)
T ss_pred cCCceecccCC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc
Confidence 11111111100 011111222222222247999999999966 23222222 24788888887743
Q ss_pred hhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 201 TSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 201 ~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
. -+..... +.+.. ....-++|+|+++...... .+..+....+.|+.
T Consensus 265 g-~d~~~~a-~~f~~-~~~~~giIlTKlD~~~~~G----~~ls~~~~~~~Pi~ 310 (336)
T PRK14974 265 G-NDAVEQA-REFNE-AVGIDGVILTKVDADAKGG----AALSIAYVIGKPIL 310 (336)
T ss_pred c-hhHHHHH-HHHHh-cCCCCEEEEeeecCCCCcc----HHHHHHHHHCcCEE
Confidence 2 2222222 22221 2345789999999875322 34455566777766
No 97
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=98.91 E-value=6.7e-08 Score=92.63 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee----------EEecCChHHHHHHhcCCc
Q 047623 202 SLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL----------GVIPEDSEVIRSTNRGYP 271 (340)
Q Consensus 202 s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~----------~~Ip~d~~~~~a~~~g~~ 271 (340)
.+.++.+.++.++..+++ +.|.+|+++.+.. +....+++.++..|.++. +.+|.++.+.++..++.+
T Consensus 357 Gl~NL~RHIenvr~FGvP-vVVAINKFd~DTe--~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~~~~s 433 (557)
T PRK13505 357 GFANLERHIENIRKFGVP-VVVAINKFVTDTD--AEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIEEGES 433 (557)
T ss_pred HHHHHHHHHHHHHHcCCC-EEEEEeCCCCCCH--HHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHhcCCC
Confidence 456777888888877664 5699999998763 133347788888999999 999999999988886554
Q ss_pred --eEeeCCCCHHHHHHHHHHHHHHhcccc
Q 047623 272 --LVLNKPPTLAGLAFEQAAWRLVEQDSM 298 (340)
Q Consensus 272 --v~~~~~~s~~~~~~~~la~~i~~~~~~ 298 (340)
-..|..+.+....++.++++|.+..+-
T Consensus 434 ~f~~lY~~d~sl~eKIe~IAkkIYGA~~V 462 (557)
T PRK13505 434 NFKPLYDDEDSLEEKIEKIATKIYGAKGV 462 (557)
T ss_pred CCceecCCCCcHHHHHHHHHHHccCCCCe
Confidence 123455678999999999999987654
No 98
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=98.88 E-value=1.2e-08 Score=92.69 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=38.7
Q ss_pred CeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 190 NEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 190 d~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
..+++|+.|+..++..+.++++.++..+....++|+|++.+.
T Consensus 190 t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~~ 231 (284)
T TIGR00345 190 TSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPE 231 (284)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcCC
Confidence 448999999999999999999999999988999999998875
No 99
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.86 E-value=1.4e-07 Score=80.67 Aligned_cols=163 Identities=23% Similarity=0.285 Sum_probs=91.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
+++|++. +-.||||||+++-||+++..+|++|++|-+|.........+ ..+.+. -
T Consensus 1 p~vi~lv-GptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL-------~~~a~~-----------------l 55 (196)
T PF00448_consen 1 PKVIALV-GPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQL-------KTYAEI-----------------L 55 (196)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHH-------HHHHHH-----------------H
T ss_pred CEEEEEE-CCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHH-------HHHHHH-----------------h
Confidence 3678888 45689999999999999998899999999997632221111 011111 1
Q ss_pred ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC-H-HH----HHHH--hcCCeEEEEeCCChh
Q 047623 130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID-A-GF----ITAI--TPANEAVLVTTPDIT 201 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-~-~~----~~~l--~~ad~viiv~~~~~~ 201 (340)
++.+...... .+....+.+.+.+.-.++||+|+|||++... . .. ...+ ...+.+++|......
T Consensus 56 ~vp~~~~~~~---------~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 56 GVPFYVARTE---------SDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp TEEEEESSTT---------SCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred ccccchhhcc---------hhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 2222211100 0111112223332223479999999998442 1 11 1122 246778888877554
Q ss_pred hHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 202 SLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 202 s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
. +.+..+.+..+..+. -++|+++.+... ..-....+....+.|+.
T Consensus 127 ~-~~~~~~~~~~~~~~~--~~lIlTKlDet~----~~G~~l~~~~~~~~Pi~ 171 (196)
T PF00448_consen 127 Q-EDLEQALAFYEAFGI--DGLILTKLDETA----RLGALLSLAYESGLPIS 171 (196)
T ss_dssp G-HHHHHHHHHHHHSST--CEEEEESTTSSS----TTHHHHHHHHHHTSEEE
T ss_pred h-HHHHHHHHHhhcccC--ceEEEEeecCCC----CcccceeHHHHhCCCeE
Confidence 3 344444444444333 589999999865 33345566777787766
No 100
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.81 E-value=1.8e-07 Score=87.96 Aligned_cols=165 Identities=18% Similarity=0.159 Sum_probs=95.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHH-HHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSL-ARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
.++++|+ +.+|+||||++++||..+ ...|++|+++|+|.+.......+.. .. ..
T Consensus 223 ~~vi~lv-GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~----------yA--------------e~ 277 (432)
T PRK12724 223 RKVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKR----------YA--------------DT 277 (432)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHH----------HH--------------Hh
Confidence 3556665 899999999999999876 5679999999999973322211100 00 00
Q ss_pred CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHH----Hhc-----CCeEEEEeC
Q 047623 129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFITA----ITP-----ANEAVLVTT 197 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~----l~~-----ad~viiv~~ 197 (340)
.++.+.. ......+.+.+.+ .+||+|||||++.. +...... +.. ...+++|+.
T Consensus 278 lgvp~~~-------------~~~~~~l~~~l~~---~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLs 341 (432)
T PRK12724 278 MGMPFYP-------------VKDIKKFKETLAR---DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLS 341 (432)
T ss_pred cCCCeee-------------hHHHHHHHHHHHh---CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEe
Confidence 1111110 0112334444432 47999999998753 2222222 221 235666666
Q ss_pred CChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE-----EecCChHH
Q 047623 198 PDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG-----VIPEDSEV 262 (340)
Q Consensus 198 ~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~-----~Ip~d~~~ 262 (340)
+.... ..+..+.+..+. ...-++|+++.+.... .-.+..+...++.|+.. .||+|-..
T Consensus 342 At~~~-~~~~~~~~~f~~--~~~~glIlTKLDEt~~----~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~ 404 (432)
T PRK12724 342 STSSY-HHTLTVLKAYES--LNYRRILLTKLDEADF----LGSFLELADTYSKSFTYLSVGQEVPFDILN 404 (432)
T ss_pred CCCCH-HHHHHHHHHhcC--CCCCEEEEEcccCCCC----ccHHHHHHHHHCCCEEEEecCCCCCCCHHH
Confidence 54332 333444444433 3457899999998752 23355677778888652 36666554
No 101
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.76 E-value=8e-08 Score=91.42 Aligned_cols=176 Identities=16% Similarity=0.133 Sum_probs=103.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
|+.|.|+++..|+||||++..|+.+|.++|.+|..+...++..+...+ ....+... .
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~iD~~~~------------~~~~g~~~-----------~ 57 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDFIDPSHH------------EAVAGRPS-----------R 57 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCCCHHHH------------HHHhCCCc-----------c
Confidence 346899999999999999999999999999999988876652221111 11111100 1
Q ss_pred ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH----HHHHHHhcC-CeEEEEeCCChhhHH
Q 047623 130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA----GFITAITPA-NEAVLVTTPDITSLR 204 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~----~~~~~l~~a-d~viiv~~~~~~s~~ 204 (340)
+++.. ....+ .+.+.+.. ..+|++||....++-+ .+......- -=||+|+.....+..
T Consensus 58 nld~~-----------~~~~~---~i~~~~~~---~~~d~~vIEG~gGl~dg~~~s~adla~~l~~PviLVv~~~~g~~s 120 (433)
T PRK13896 58 TLDPW-----------LSGED---GMRRNYYR---GEGDICVVEGVMGLYDGDVSSTAMVAEALDLPVVLVVDAKAGMES 120 (433)
T ss_pred cCChh-----------hCCHH---HHHHHHHh---hcCCEEEEECCCccccCCCCCHHHHHHHHCCCEEEEEcCcccHHH
Confidence 11100 01112 22222222 2499999999886621 122222221 138888888777544
Q ss_pred HHH--HHHHHHHh---cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHH-HHHhcCC
Q 047623 205 DAD--RVTGLLEC---DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVI-RSTNRGY 270 (340)
Q Consensus 205 ~~~--~~~~~l~~---~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~-~a~~~g~ 270 (340)
.+. .-+..+.. .+++..++|+|++.+... ...+++..+. ++++++.||.++.+. .....|.
T Consensus 121 ~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~~h----~~~l~~~~~~-~i~vlG~lP~~~~~~~~~RHLGL 187 (433)
T PRK13896 121 VAATALGFRAYADRIGRDIDVAGVIAQRAHGGRH----ADGIRDALPD-ELTYFGRIPPRDDLEIPDRHLGL 187 (433)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEECCCcHHH----HHHHHHhhhh-cCceeEecccCCCCCCCCCCcCC
Confidence 443 33322332 367889999999987431 1112222233 789999999988853 4445555
No 102
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.75 E-value=6.4e-07 Score=84.20 Aligned_cols=158 Identities=14% Similarity=0.118 Sum_probs=91.2
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHH----CCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceec
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLAR----LGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVR 124 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~----~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 124 (340)
.+++|++. +..|+||||+++.||..+.. .|++|+++++|.........+.. +.+.
T Consensus 173 ~~~vi~lv-GptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~-------~a~~------------- 231 (388)
T PRK12723 173 KKRVFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQT-------YGDI------------- 231 (388)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHH-------Hhhc-------------
Confidence 45677776 56699999999999999874 48999999999863332222110 0000
Q ss_pred ccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHH----HHHHhcC--C-eEEEE
Q 047623 125 DKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGF----ITAITPA--N-EAVLV 195 (340)
Q Consensus 125 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~----~~~l~~a--d-~viiv 195 (340)
-++.+... .....+...++.+ .+||+||||+++... ... ...+..+ + .+++|
T Consensus 232 ----lgvpv~~~----------~~~~~l~~~L~~~-----~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LV 292 (388)
T PRK12723 232 ----MGIPVKAI----------ESFKDLKEEITQS-----KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLA 292 (388)
T ss_pred ----CCcceEee----------CcHHHHHHHHHHh-----CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 01101000 0112233333333 369999999999542 211 2233322 3 57777
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 196 TTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 196 ~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
+.+... -..+.++.+... ....-++|+++.+.... .-.+..+...++.|+.
T Consensus 293 lsat~~-~~~~~~~~~~~~--~~~~~~~I~TKlDet~~----~G~~l~~~~~~~~Pi~ 343 (388)
T PRK12723 293 VSSTTK-TSDVKEIFHQFS--PFSYKTVIFTKLDETTC----VGNLISLIYEMRKEVS 343 (388)
T ss_pred EcCCCC-HHHHHHHHHHhc--CCCCCEEEEEeccCCCc----chHHHHHHHHHCCCEE
Confidence 777554 333334444433 23457899999998763 3335567777787765
No 103
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.71 E-value=5.4e-07 Score=86.75 Aligned_cols=166 Identities=19% Similarity=0.165 Sum_probs=98.6
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
.+++.|.|+++..|+||||+++.|+.+|.++ |..+...+..-+ +......+..
T Consensus 236 ~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~GpD~id-----------------~~p~~~~~~~------- 288 (476)
T PRK06278 236 NKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGPDVRD-----------------IVPSLYLLRE------- 288 (476)
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCCChhh-----------------cCCcceeccc-------
Confidence 4467899999999999999999999999986 776665432111 0000000000
Q ss_pred cCceeEeecCCCCC-C--CCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH---------HHHHHhcC-CeEEE
Q 047623 128 WSNFELLCISKPRS-K--LPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG---------FITAITPA-NEAVL 194 (340)
Q Consensus 128 ~~~l~~l~~~~~~~-~--~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~---------~~~~l~~a-d~vii 194 (340)
+..+... + .+..+.. ...++.++. .++|++||+...++... ........ --||+
T Consensus 289 -------~~sp~~a~n~~~d~~~~~---~~~~~~~~~---~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~PVIL 355 (476)
T PRK06278 289 -------KMTKYNSIKIGDRGWSDV---EEFLEFVKN---SDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYI 355 (476)
T ss_pred -------ccCChHHHhhcCCcccCH---HHHHHHHHh---cCCCEEEEECCCCcccccCCCCccccHHHHHHHhCCCEEE
Confidence 0000000 0 0111111 223333332 25899999998765332 11222221 23888
Q ss_pred EeCCChhhHHHHHH----HHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecC
Q 047623 195 VTTPDITSLRDADR----VTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPE 258 (340)
Q Consensus 195 v~~~~~~s~~~~~~----~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~ 258 (340)
|+..+..++..+.. +.+.++..+.+..++|+|++.+.. +......+.+..|++++++ |.
T Consensus 356 V~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~----~~~~~~~~le~~gvpVLG~-~~ 418 (476)
T PRK06278 356 VSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNME----IFEKVKKIAENSNINLIGV-GK 418 (476)
T ss_pred EEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHH----HHHHHHHHHHhcCCCEEEe-cc
Confidence 88888877555543 445666667788999999998644 3333566777799999999 54
No 104
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.69 E-value=8.5e-08 Score=86.92 Aligned_cols=43 Identities=33% Similarity=0.343 Sum_probs=37.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-C-CcEEEEecCCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-G-FSVVAIDADVGL 91 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g-~~VlliD~D~~~ 91 (340)
..+++|+|+|+ +|+||||+++.||.+++.+ | ++|++|++|++.
T Consensus 192 ~~~~vi~~vGp-tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 192 EQGGVIALVGP-TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35678999855 8999999999999999976 5 999999999873
No 105
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.66 E-value=5.6e-08 Score=84.95 Aligned_cols=151 Identities=21% Similarity=0.205 Sum_probs=84.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
+...+|+|+ +.+|+||||+.-.|+..+.++|++|.++-.||.++-.. .++|- ..++.+. .
T Consensus 27 g~a~~iGiT-G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD--------------RiRM~~~----~ 87 (266)
T PF03308_consen 27 GRAHVIGIT-GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD--------------RIRMQEL----S 87 (266)
T ss_dssp T-SEEEEEE-E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS----------------GGGCHHH----H
T ss_pred CCceEEEee-CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc--------------HHHhcCc----C
Confidence 457899998 67899999999999999999999999999999844332 33332 1122211 1
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhh-HHH
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITS-LRD 205 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s-~~~ 205 (340)
..+++++-+......... -+......+..+.. ..||+|||.|-+- +.....+...+|.+++++.|+..+ +..
T Consensus 88 ~d~~vfIRS~atRG~lGG---ls~~t~~~v~ll~a---aG~D~IiiETVGv-GQsE~~I~~~aD~~v~v~~Pg~GD~iQ~ 160 (266)
T PF03308_consen 88 RDPGVFIRSMATRGSLGG---LSRATRDAVRLLDA---AGFDVIIIETVGV-GQSEVDIADMADTVVLVLVPGLGDEIQA 160 (266)
T ss_dssp TSTTEEEEEE---SSHHH---HHHHHHHHHHHHHH---TT-SEEEEEEESS-STHHHHHHTTSSEEEEEEESSTCCCCCT
T ss_pred CCCCEEEeecCcCCCCCC---ccHhHHHHHHHHHH---cCCCEEEEeCCCC-CccHHHHHHhcCeEEEEecCCCccHHHH
Confidence 226666654443321111 11233444555544 3799999999772 333456678899999999996554 211
Q ss_pred HHH-HHHHHHhcCCCceEEEEecccCC
Q 047623 206 ADR-VTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 206 ~~~-~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+. ++|. -=.+|+|+.+..
T Consensus 161 ~KaGimEi-------aDi~vVNKaD~~ 180 (266)
T PF03308_consen 161 IKAGIMEI-------ADIFVVNKADRP 180 (266)
T ss_dssp B-TTHHHH--------SEEEEE--SHH
T ss_pred Hhhhhhhh-------ccEEEEeCCChH
Confidence 111 1111 113899999843
No 106
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.63 E-value=1.9e-06 Score=86.73 Aligned_cols=160 Identities=18% Similarity=0.134 Sum_probs=93.9
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHH-HCC-CcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLA-RLG-FSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g-~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
.+++|+++ +-.|+||||++..||..+. +.| ++|.++++|.+.......+. ...+.
T Consensus 184 ~g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~-------~~a~~--------------- 240 (767)
T PRK14723 184 QGGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLR-------IYGRI--------------- 240 (767)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHH-------HHHHh---------------
Confidence 35788888 5678899999999999885 556 69999999976322211110 00000
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHH---H---hcCCeEEEEeCC
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFITA---I---TPANEAVLVTTP 198 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~---l---~~ad~viiv~~~ 198 (340)
.++.+.. ..+...+...++.+. +||+|||||++.. +...... + ...+.+++|+..
T Consensus 241 --~gvpv~~----------~~~~~~l~~al~~~~-----~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsA 303 (767)
T PRK14723 241 --LGVPVHA----------VKDAADLRFALAALG-----DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNA 303 (767)
T ss_pred --CCCCccc----------cCCHHHHHHHHHHhc-----CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECC
Confidence 1111100 012333444444443 5899999999933 2222221 1 124568888776
Q ss_pred ChhhHHHHHHHHHHHHhc-CCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 199 DITSLRDADRVTGLLECD-GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 199 ~~~s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
.. ..+.+.++.+.++.. +.+.-++|+++.+.... .-.+..+...+++|+.
T Consensus 304 t~-~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~----~G~iL~i~~~~~lPI~ 354 (767)
T PRK14723 304 AS-HGDTLNEVVHAYRHGAGEDVDGCIITKLDEATH----LGPALDTVIRHRLPVH 354 (767)
T ss_pred CC-cHHHHHHHHHHHhhcccCCCCEEEEeccCCCCC----ccHHHHHHHHHCCCeE
Confidence 53 334445555555543 23567899999998763 3335567777787765
No 107
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.61 E-value=4.4e-06 Score=74.84 Aligned_cols=169 Identities=18% Similarity=0.208 Sum_probs=99.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
.+..+++. ++.|+||||+...+|..+..+|.+|.++++|.+.......+ ..... .
T Consensus 74 ~~~~i~~~-G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql----------~~~~~--------------~ 128 (270)
T PRK06731 74 EVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL----------QDYVK--------------T 128 (270)
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH----------HHHhh--------------h
Confidence 44678887 55999999999999999998899999999997731111100 00000 0
Q ss_pred CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHH----HH--hcCCeEEEEeCCCh
Q 047623 129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFIT----AI--TPANEAVLVTTPDI 200 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~----~l--~~ad~viiv~~~~~ 200 (340)
-++.+... .+...+...++.+.+ ..+||+||||+++.. +..... .+ ...|.+++|+.+..
T Consensus 129 ~~~~~~~~----------~~~~~l~~~l~~l~~--~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 129 IGFEVIAV----------RDEAAMTRALTYFKE--EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred cCceEEec----------CCHHHHHHHHHHHHh--cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 11111110 122344444555543 136999999999965 232222 22 23566787776543
Q ss_pred hhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE-----EecCChH
Q 047623 201 TSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG-----VIPEDSE 261 (340)
Q Consensus 201 ~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~-----~Ip~d~~ 261 (340)
.. ..+...++.+.. ...-++|+++.+.... .-.+..+....+.|+.. .||+|-.
T Consensus 197 ~~-~d~~~~~~~f~~--~~~~~~I~TKlDet~~----~G~~l~~~~~~~~Pi~~it~Gq~vp~di~ 255 (270)
T PRK06731 197 KS-KDMIEIITNFKD--IHIDGIVFTKFDETAS----SGELLKIPAVSSAPIVLMTDGQDVKKNIH 255 (270)
T ss_pred CH-HHHHHHHHHhCC--CCCCEEEEEeecCCCC----ccHHHHHHHHHCcCEEEEeCCCCCCcchh
Confidence 22 223334444443 4567899999998762 23355667778887662 3665544
No 108
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.5e-06 Score=79.44 Aligned_cols=153 Identities=15% Similarity=0.168 Sum_probs=92.4
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD 125 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 125 (340)
....+.+|.|.| -.|+||||++..||+++.++|++|+||-+|-......--+. .+...
T Consensus 97 ~K~kpsVimfVG-LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLk-------------qnA~k-------- 154 (483)
T KOG0780|consen 97 KKGKPSVIMFVG-LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLK-------------QNATK-------- 154 (483)
T ss_pred ccCCCcEEEEEe-ccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHH-------------HHhHh--------
Confidence 445566777774 55679999999999999999999999999976333221111 11101
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--C-HHHHHHH-----hcCCeEEEEeC
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--D-AGFITAI-----TPANEAVLVTT 197 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~-~~~~~~l-----~~ad~viiv~~ 197 (340)
.++-++. .+...+......+.+.+.-+++||+||+||++.. + .++.+.. ...|.||+|.+
T Consensus 155 ---~~iP~yg---------syte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmD 222 (483)
T KOG0780|consen 155 ---ARVPFYG---------SYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMD 222 (483)
T ss_pred ---hCCeeEe---------cccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 1111111 1122233444555555555679999999999954 2 2222222 23688999998
Q ss_pred CChhh--HHHHHHHHHHHHhcCCCceEEEEecccCCcccccc
Q 047623 198 PDITS--LRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGED 237 (340)
Q Consensus 198 ~~~~s--~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~ 237 (340)
.+... ...++.+-+ .+...++|+++.+....+...
T Consensus 223 asiGQaae~Qa~aFk~-----~vdvg~vIlTKlDGhakGGgA 259 (483)
T KOG0780|consen 223 ASIGQAAEAQARAFKE-----TVDVGAVILTKLDGHAKGGGA 259 (483)
T ss_pred ccccHhHHHHHHHHHH-----hhccceEEEEecccCCCCCce
Confidence 86443 233333322 345577999998877654444
No 109
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.45 E-value=9.5e-06 Score=75.81 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=88.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CC-CcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLAR-LG-FSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD 125 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g-~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 125 (340)
..+.+++++ +..|+||||+++.||..+.. .| .+|.+|.+|....+....+ ..+.+.
T Consensus 135 ~~g~ii~lv-GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL-------~~~a~~-------------- 192 (374)
T PRK14722 135 ERGGVFALM-GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL-------RIFGKI-------------- 192 (374)
T ss_pred cCCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHH-------HHHHHH--------------
Confidence 445677777 77899999999999998774 46 6999999998633221111 000011
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHH---HHHHhc---CCeEEEEeC
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGF---ITAITP---ANEAVLVTT 197 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~---~~~l~~---ad~viiv~~ 197 (340)
-++.+... .....+...+..+. ++|+|+||+++.. +... ...+.. .+.+++|+.
T Consensus 193 ---~gv~~~~~----------~~~~~l~~~l~~l~-----~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLs 254 (374)
T PRK14722 193 ---LGVPVHAV----------KDGGDLQLALAELR-----NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLN 254 (374)
T ss_pred ---cCCceEec----------CCcccHHHHHHHhc-----CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEec
Confidence 01111000 11122333344443 5899999999844 2322 223322 344566666
Q ss_pred CChhhHHHHHHHHHHHHhcC-------CCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 198 PDITSLRDADRVTGLLECDG-------IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 198 ~~~~s~~~~~~~~~~l~~~~-------~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
+.. ....+.+.++.+.... ...-++|+++.+... ..-.+..+....++|+.
T Consensus 255 Ats-~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~----~~G~~l~~~~~~~lPi~ 312 (374)
T PRK14722 255 ATS-HGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS----NLGGVLDTVIRYKLPVH 312 (374)
T ss_pred Ccc-ChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC----CccHHHHHHHHHCcCeE
Confidence 533 2233333333333221 135689999999876 23334566677777766
No 110
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.43 E-value=9.8e-06 Score=73.31 Aligned_cols=163 Identities=20% Similarity=0.224 Sum_probs=99.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
+.+.+|.|+ +--|+||||+..-||++|.+.|++|++.=+|-.....-.-+... . .
T Consensus 137 ~~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w-------------~-----------e 191 (340)
T COG0552 137 KKPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVW-------------G-----------E 191 (340)
T ss_pred CCcEEEEEE-ecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHH-------------H-----------H
Confidence 447788888 55689999999999999999999999998886422211111100 0 0
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC---HHHHH------HHh-----cCCeEE
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID---AGFIT------AIT-----PANEAV 193 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~---~~~~~------~l~-----~ad~vi 193 (340)
.-++.++..... -++. .-..+.+.....++||+|||||++.+. .++.+ ++. +.+.++
T Consensus 192 r~gv~vI~~~~G-------~DpA--aVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~l 262 (340)
T COG0552 192 RLGVPVISGKEG-------ADPA--AVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEIL 262 (340)
T ss_pred HhCCeEEccCCC-------CCcH--HHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEE
Confidence 033444432111 1111 123333333334589999999999662 22211 121 224477
Q ss_pred EEeCC--ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 194 LVTTP--DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 194 iv~~~--~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
++.+. +..++.+++.+-+.+. .-|+|+++.+....+.. +..+...++.|+.
T Consensus 263 lvlDAttGqnal~QAk~F~eav~-----l~GiIlTKlDgtAKGG~----il~I~~~l~~PI~ 315 (340)
T COG0552 263 LVLDATTGQNALSQAKIFNEAVG-----LDGIILTKLDGTAKGGI----ILSIAYELGIPIK 315 (340)
T ss_pred EEEEcccChhHHHHHHHHHHhcC-----CceEEEEecccCCCcce----eeeHHHHhCCCEE
Confidence 77554 5667777777666543 56899999997654333 3367788888876
No 111
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.42 E-value=1e-05 Score=78.04 Aligned_cols=158 Identities=19% Similarity=0.145 Sum_probs=85.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHH-HCC-CcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLA-RLG-FSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g-~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
.+++|+++ +-.|+||||++..||..+. ++| ++|.+|++|.+..+....+ ..+.+.
T Consensus 255 ~g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQL-------r~~Aei--------------- 311 (484)
T PRK06995 255 RGGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQL-------RIYGKI--------------- 311 (484)
T ss_pred CCcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHH-------HHHHHH---------------
Confidence 45788888 5568999999999999886 455 5999999998632211100 000010
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHH---HHHHhcC---CeEEEEeCC
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGF---ITAITPA---NEAVLVTTP 198 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~---~~~l~~a---d~viiv~~~ 198 (340)
-++.+... ....+. ...+.+ ..++|+++||+++... ... ...+... ...++++..
T Consensus 312 --lGVpv~~~----------~~~~Dl---~~aL~~--L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdA 374 (484)
T PRK06995 312 --LGVPVHAV----------KDAADL---RLALSE--LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNA 374 (484)
T ss_pred --hCCCeecc----------CCchhH---HHHHHh--ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 00000000 001111 112222 1258999999988432 111 1122221 234555544
Q ss_pred ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
. .....+.+..+.+.. ....++|+|+.+... ..-.+..+...+++++.
T Consensus 375 t-~~~~~l~~i~~~f~~--~~~~g~IlTKlDet~----~~G~~l~i~~~~~lPI~ 422 (484)
T PRK06995 375 T-SHGDTLNEVVQAYRG--PGLAGCILTKLDEAA----SLGGALDVVIRYKLPLH 422 (484)
T ss_pred C-CcHHHHHHHHHHhcc--CCCCEEEEeCCCCcc----cchHHHHHHHHHCCCeE
Confidence 3 223444445554444 345689999999875 33345577777887765
No 112
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=98.34 E-value=1.8e-06 Score=61.94 Aligned_cols=62 Identities=26% Similarity=0.401 Sum_probs=48.9
Q ss_pred CEEEEcCCCCCCHHHHHHHhc--CCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEeccc
Q 047623 168 DFILIDCPAGIDAGFITAITP--ANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVR 229 (340)
Q Consensus 168 D~VIiD~~~~~~~~~~~~l~~--ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~ 229 (340)
||+|||+||+.++.....+.. .+..++|++|...++..+++.++.+++.+.+.+|+|-|+..
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~ 65 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSY 65 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-E
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 899999999998877776643 68899999999999999999999999999999999999954
No 113
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1.2e-05 Score=75.52 Aligned_cols=153 Identities=19% Similarity=0.271 Sum_probs=95.8
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
.+.+-+|+|. +--||||||--+-+|+||-+.+++|++.-||....+.-.-++.+-+ .+..+ .+ +.-+
T Consensus 375 ~krPYVi~fv-GVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~---rl~~l-~~--~~v~------ 441 (587)
T KOG0781|consen 375 RKRPYVISFV-GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVE---RLSAL-HG--TMVE------ 441 (587)
T ss_pred cCCCeEEEEE-eecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHH---HHHHh-cc--chhH------
Confidence 3466788888 5678999999999999999999999999999864544333322211 11111 00 0000
Q ss_pred ccCceeEeecCCCCCCCCCCcchhh---HHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHHH------hcCCeEEEE
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKA---LTWVVEALKSRQEGSPDFILIDCPAGI--DAGFITAI------TPANEAVLV 195 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~l------~~ad~viiv 195 (340)
+. ...++.+. ....++..++ ..||+|+|||++.+ +...+..| ...|.|+.|
T Consensus 442 ------lf---------ekGYgkd~a~vak~AI~~a~~---~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~v 503 (587)
T KOG0781|consen 442 ------LF---------EKGYGKDAAGVAKEAIQEARN---QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFV 503 (587)
T ss_pred ------HH---------hhhcCCChHHHHHHHHHHHHh---cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEe
Confidence 00 00011111 2234444444 48999999999965 22222222 357999999
Q ss_pred eCC--ChhhHHHHHHHHHHHHhcCCC--ceEEEEecccC
Q 047623 196 TTP--DITSLRDADRVTGLLECDGIR--DIKMVVNRVRT 230 (340)
Q Consensus 196 ~~~--~~~s~~~~~~~~~~l~~~~~~--~~~vviN~~~~ 230 (340)
-++ +..++..+..+-+.+.....+ .=++++.+++.
T Consensus 504 gealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dt 542 (587)
T KOG0781|consen 504 GEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDT 542 (587)
T ss_pred hhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccc
Confidence 877 566788888888888754432 34688888875
No 114
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.21 E-value=2.5e-05 Score=72.73 Aligned_cols=157 Identities=22% Similarity=0.240 Sum_probs=94.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLA--RLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
+++|+++ +-.||||||+.+-||+.+. ...++|.+|-+|...-+...-+ .+..+++.-+
T Consensus 203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL-------k~Ya~im~vp------------ 262 (407)
T COG1419 203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL-------KTYADIMGVP------------ 262 (407)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH-------HHHHHHhCCc------------
Confidence 6788888 5568999999999999999 4578999999996522221111 1111221110
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHH----HHHhc--CCeEEEEeCCC
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFI----TAITP--ANEAVLVTTPD 199 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~----~~l~~--ad~viiv~~~~ 199 (340)
+. ....+.++...+..+.+ +|+|+|||.+.- +.... +.+.. ...+.+|+..
T Consensus 263 ---~~------------vv~~~~el~~ai~~l~~-----~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsa- 321 (407)
T COG1419 263 ---LE------------VVYSPKELAEAIEALRD-----CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSA- 321 (407)
T ss_pred ---eE------------EecCHHHHHHHHHHhhc-----CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEec-
Confidence 00 11344566666777765 899999999832 33222 22222 3445555544
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
......++++++.++.. +.-++|+++.+... .+-+.-.+....+.|+.
T Consensus 322 t~K~~dlkei~~~f~~~--~i~~~I~TKlDET~----s~G~~~s~~~e~~~PV~ 369 (407)
T COG1419 322 TTKYEDLKEIIKQFSLF--PIDGLIFTKLDETT----SLGNLFSLMYETRLPVS 369 (407)
T ss_pred CcchHHHHHHHHHhccC--CcceeEEEcccccC----chhHHHHHHHHhCCCeE
Confidence 33445666677766653 45689999998865 22233345555666655
No 115
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=98.15 E-value=1.1e-05 Score=76.72 Aligned_cols=207 Identities=17% Similarity=0.217 Sum_probs=119.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhh----cC---CCcccccee
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVL----NG---DCRLDQALV 123 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l----~~---~~~~~~~~~ 123 (340)
+.|.|.|+...+|||++++.|...++++|++|.- +..|+-++..+-..... ..+...++ .+ ...++..+.
T Consensus 2 ~~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~P--FK~QNMsLNs~it~~G~-EIgraQ~~QA~Aa~i~p~v~mNPvLL 78 (486)
T COG1492 2 KAIMVQGTTSDAGKSFLVAGLCRILARRGYRVAP--FKSQNMSLNSAITPGGG-EIGRAQALQALAAGIEPSVHMNPVLL 78 (486)
T ss_pred CccEEEeccCCcchhhhhhhhhHHHHhcCCccCC--CchhhcccccEECCCCc-EEehhhhHHHHHcCCCCccccCCEEE
Confidence 3678888999999999999999999999999965 34444444433322211 11222222 22 234556666
Q ss_pred cccccCceeEeecCCCCCCCCCC--c---chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH--------HHHHhcCC
Q 047623 124 RDKRWSNFELLCISKPRSKLPLG--F---GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF--------ITAITPAN 190 (340)
Q Consensus 124 ~~~~~~~l~~l~~~~~~~~~~~~--~---~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~--------~~~l~~ad 190 (340)
+.+..-+..++.-+......... . ....+..+.+.+. .+.+.||+|++...++..... ......+|
T Consensus 79 KP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~-~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~d 157 (486)
T COG1492 79 KPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLE-RLDREYDVVVIEGAGSPAEINLRDRDIANMGVAEIAD 157 (486)
T ss_pred eecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHH-HhhhcccEEEEecCCChhhcCcccccccceeeehhcC
Confidence 65543456666555544332211 1 1112222333332 245689999999998543211 11222333
Q ss_pred -eEEEEeCCCh-hhHHHHHHHHHHHHh-cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHH
Q 047623 191 -EAVLVTTPDI-TSLRDADRVTGLLEC-DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVI 263 (340)
Q Consensus 191 -~viiv~~~~~-~s~~~~~~~~~~l~~-~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~ 263 (340)
-+|+|.+-+. ..+..+.-.+..+.+ ......++|+|+++.+...-.. -++.+++.+|.++++++|+.+...
T Consensus 158 apvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~--gik~Le~~tg~~vlGv~P~~~~~~ 231 (486)
T COG1492 158 APVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDESLLDP--GLKWLEELTGVPVLGVLPYLKDAL 231 (486)
T ss_pred CCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCCHHHHhh--HHHHHHHhhCCeeEeecccccccc
Confidence 2666666654 222333333333332 2335688999999887532222 377888899999999999877643
No 116
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=97.95 E-value=6.8e-05 Score=77.08 Aligned_cols=87 Identities=15% Similarity=0.222 Sum_probs=62.6
Q ss_pred CCCEEEEcCCCCCCHH------HHHHHhcCC-eEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCccccccc
Q 047623 166 SPDFILIDCPAGIDAG------FITAITPAN-EAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDM 238 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~~------~~~~l~~ad-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~ 238 (340)
.+|++||.+.+++..+ +...+..-+ -+|+|+.....+|+.+...++.+...+++..++|+|... .
T Consensus 184 ~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~--------~ 255 (817)
T PLN02974 184 GRVLALVETAGGVASPGPSGTLQCDLYRPLRLPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG--------L 255 (817)
T ss_pred cCCeEEEECCCcccccCCCCCCHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc--------c
Confidence 5899999999976322 233333222 399999999999999999999999999999999999532 1
Q ss_pred ccHHHHHHHh--CCcee--EEecCCh
Q 047623 239 MSVLDIQEML--GLALL--GVIPEDS 260 (340)
Q Consensus 239 ~~~~~i~~~~--g~~v~--~~Ip~d~ 260 (340)
.+.+.+++.+ +.+++ ..+|.++
T Consensus 256 ~N~~~l~~~~~~~~pv~~lp~~p~~~ 281 (817)
T PLN02974 256 SNEKALLSYLSNRVPVFVLPPVPEDP 281 (817)
T ss_pred chHHHHHHHHhcCCcEEeCCCCCCCc
Confidence 3344555543 77776 3466554
No 117
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.89 E-value=5.6e-05 Score=66.33 Aligned_cols=111 Identities=22% Similarity=0.311 Sum_probs=65.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
+...+|.|. +-.|+||||+...|-.++.+++.+.-+|.+||.-.++.+-.+++..+...-. +....+.-
T Consensus 17 ~~p~~ilVv-GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYk----------EvMkqY~L 85 (366)
T KOG1532|consen 17 QRPVIILVV-GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYK----------EVMKQYQL 85 (366)
T ss_pred cCCcEEEEE-ecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHH----------HHHHHhCC
Confidence 344566666 6788999999999999999999999999999875555544433322111111 11111111
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI 178 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~ 178 (340)
.||-.++ ....+-...+.++++.+.+. .+.+||+|||||+.+
T Consensus 86 GPNGgI~--------TsLNLF~tk~dqv~~~iek~-~~~~~~~liDTPGQI 127 (366)
T KOG1532|consen 86 GPNGGIV--------TSLNLFATKFDQVIELIEKR-AEEFDYVLIDTPGQI 127 (366)
T ss_pred CCCcchh--------hhHHHHHHHHHHHHHHHHHh-hcccCEEEEcCCCce
Confidence 1222211 00011223444445555442 336999999999954
No 118
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.88 E-value=1.3e-05 Score=70.84 Aligned_cols=103 Identities=24% Similarity=0.315 Sum_probs=53.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecC
Q 047623 58 GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCIS 137 (340)
Q Consensus 58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 137 (340)
+-.|+||||.+.++..++...|++|.+|.+||....+.+-...+-++-.+..+++.... -.||-.++.
T Consensus 3 GpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~----------LGPNGal~~-- 70 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYG----------LGPNGALIY-- 70 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T------------HHHHHHH--
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcC----------cCCcHHHHH--
Confidence 44699999999999999999999999999999866665554444333344444433210 001211110
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH
Q 047623 138 KPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG 181 (340)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~ 181 (340)
....-...+.++.+.+.+. +-+|+|+|||+.....
T Consensus 71 ------~me~l~~~~d~l~~~i~~~---~~~y~l~DtPGQiElf 105 (238)
T PF03029_consen 71 ------CMEYLEENIDWLDEEIEKY---EDDYLLFDTPGQIELF 105 (238)
T ss_dssp ------HHHHHGGGHHHHHHHHHHH---H-SEEEEE--SSHHHH
T ss_pred ------HHHHHHHHHHHHHHHHhhc---CCcEEEEeCCCCEEEE
Confidence 0011223445566666553 2499999999976543
No 119
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.81 E-value=0.00021 Score=66.35 Aligned_cols=46 Identities=33% Similarity=0.376 Sum_probs=37.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL 94 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l 94 (340)
....++.+.|++ ++||||+++-||-.+-++|++|.+||+|+-.+.+
T Consensus 71 ~~~~~vmvvG~v-DSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei 116 (398)
T COG1341 71 GKVGVVMVVGPV-DSGKSTLTTYLANKLLARGRKVAIIDADVGQSEI 116 (398)
T ss_pred cCCcEEEEECCc-CcCHHHHHHHHHHHHhhcCceEEEEeCCCCCccc
Confidence 344567777555 6799999999999999999999999999864554
No 120
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.68 E-value=7.9e-05 Score=63.98 Aligned_cols=101 Identities=25% Similarity=0.380 Sum_probs=65.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecC
Q 047623 58 GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCIS 137 (340)
Q Consensus 58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 137 (340)
+-.|+||||-...+...++..|.+|.+|.+||.+.++.+-.+..-..-.++.+++.. ..-.||..+...
T Consensus 9 GPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~----------~~LGPNg~l~yc- 77 (290)
T KOG1533|consen 9 GPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEE----------LGLGPNGALKYC- 77 (290)
T ss_pred cCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHH----------hCCCCchhHHHH-
Confidence 678999999999999999999999999999999888777665543323333333321 111122211100
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC
Q 047623 138 KPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID 179 (340)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~ 179 (340)
...-...+.+++..++. .+..|+|+|||+.+.
T Consensus 78 -------~E~l~~~idwl~~~l~~---~~~~Y~lFDcPGQVE 109 (290)
T KOG1533|consen 78 -------MEYLEANIDWLLEKLKP---LTDHYVLFDCPGQVE 109 (290)
T ss_pred -------HHHHHhhhHHHHHHhhh---ccCcEEEEeCCCcEE
Confidence 00112344566666665 278899999999653
No 121
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.67 E-value=8.9e-05 Score=70.71 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=48.5
Q ss_pred CCCCEEEEEEcCCC---CCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCC
Q 047623 47 GETPRVVVITSGKG---GVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR 103 (340)
Q Consensus 47 ~~~~~iI~v~s~kG---GvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~ 103 (340)
++.+|+|.|+|.-. |.||||+++|||..|++.|++|+++ .+.+++...||.+..
T Consensus 35 ~~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~---LR~PSlg~~fg~kgg 91 (524)
T cd00477 35 RPDGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC---LREPSLGPTFGIKGG 91 (524)
T ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE---EecCCcCcccCCCCC
Confidence 45689999999998 9999999999999999999999988 777999999987754
No 122
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.63 E-value=0.00089 Score=60.25 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=59.6
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
++.+.++|||+... ......+..+|.+++|+.....--....++.+.+...+.+ +.+++|+.+....... ....+
T Consensus 70 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~~~--~~~~~ 146 (267)
T cd04169 70 DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREGRDPL--ELLDE 146 (267)
T ss_pred CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCCCCHH--HHHHH
Confidence 58899999999643 3356677889999999987543333445566666555555 6789999986432111 12567
Q ss_pred HHHHhCCcee-EEec
Q 047623 244 IQEMLGLALL-GVIP 257 (340)
Q Consensus 244 i~~~~g~~v~-~~Ip 257 (340)
+++.++.+.+ ..+|
T Consensus 147 l~~~l~~~~~~~~~P 161 (267)
T cd04169 147 IEEELGIDCTPLTWP 161 (267)
T ss_pred HHHHHCCCceeEEec
Confidence 8888887765 4555
No 123
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.61 E-value=0.0009 Score=57.26 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=49.9
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~ 230 (340)
.+.++++|||+.. .......+..+|.+++|+.....-.....+++..+...+.+.+.+++|+.+.
T Consensus 64 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 4678999999853 2334566788999999999876545566777888887777777889999986
No 124
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.57 E-value=0.00081 Score=60.59 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=61.9
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
++.+.++|||+... ......+..+|.+++|+.....--....++++.+...+.+. .+++|+.+..... ......+
T Consensus 63 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~a~--~~~~~~~ 139 (270)
T cd01886 63 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPR-IAFVNKMDRTGAD--FFRVVEQ 139 (270)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCCCC--HHHHHHH
Confidence 47889999998642 33466788999999999886554455667777777766654 5899999965311 1123567
Q ss_pred HHHHhCCcee-EEecC
Q 047623 244 IQEMLGLALL-GVIPE 258 (340)
Q Consensus 244 i~~~~g~~v~-~~Ip~ 258 (340)
+.+.++...+ ..+|-
T Consensus 140 l~~~l~~~~~~~~~Pi 155 (270)
T cd01886 140 IREKLGANPVPLQLPI 155 (270)
T ss_pred HHHHhCCCceEEEecc
Confidence 7788876533 55664
No 125
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.57 E-value=0.00014 Score=70.12 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=48.7
Q ss_pred CCCCEEEEEEcCCC---CCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCC
Q 047623 47 GETPRVVVITSGKG---GVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR 103 (340)
Q Consensus 47 ~~~~~iI~v~s~kG---GvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~ 103 (340)
++.+|+|.|+|.-. |.||||++++||..|++.|++| ||+ .+.+++...||.+..
T Consensus 51 ~~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~-LR~Pslg~~fg~kgg 107 (578)
T PRK13506 51 KPKGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CAC-IRQPSMGPVFGVKGG 107 (578)
T ss_pred CCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEE-eccCCcCCccCCCCC
Confidence 45689999999888 9999999999999999999999 888 888999999987754
No 126
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.56 E-value=0.00023 Score=58.60 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+|.|+|. .|+||||++..|+..+.++|++|.+|+.|..
T Consensus 1 vi~i~G~-~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~ 38 (155)
T TIGR00176 1 VLQIVGP-KNSGKTTLIERLVKALKARGYRVATIKHDHH 38 (155)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 4667755 4999999999999999999999999998743
No 127
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.01 Score=56.65 Aligned_cols=159 Identities=20% Similarity=0.151 Sum_probs=86.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHH-HC-CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLA-RL-GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD 125 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~-g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 125 (340)
..+.+|++. +.-|+||||+..-||..+. .. +.++.++-+|....+....+ ..+.+++
T Consensus 189 ~~g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL-------~~~a~il------------- 247 (420)
T PRK14721 189 EQGGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQL-------RIYGKLL------------- 247 (420)
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHH-------HHHHHHc-------------
Confidence 456788888 6778999999999998654 33 47888888876422111000 0000110
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHH---HHHHhc---CCeEEEEeC
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGF---ITAITP---ANEAVLVTT 197 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~---~~~l~~---ad~viiv~~ 197 (340)
++.+.. .....++...+..+. ++|+|+||+++... ... ...+.. ...+++|+.
T Consensus 248 ----Gvp~~~----------v~~~~dl~~al~~l~-----~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~ 308 (420)
T PRK14721 248 ----GVSVRS----------IKDIADLQLMLHELR-----GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLN 308 (420)
T ss_pred ----CCceec----------CCCHHHHHHHHHHhc-----CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEc
Confidence 111100 011222233333333 59999999986332 111 222322 345667666
Q ss_pred CChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 198 PDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 198 ~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
.. ..-..+.+++..+.. ...-++|+++.+... ..-.+..+....++++.
T Consensus 309 at-~~~~~~~~~~~~f~~--~~~~~~I~TKlDEt~----~~G~~l~~~~~~~lPi~ 357 (420)
T PRK14721 309 AT-SSGDTLDEVISAYQG--HGIHGCIITKVDEAA----SLGIALDAVIRRKLVLH 357 (420)
T ss_pred CC-CCHHHHHHHHHHhcC--CCCCEEEEEeeeCCC----CccHHHHHHHHhCCCEE
Confidence 54 223334444444443 456789999999876 22334566677777766
No 128
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.50 E-value=0.00055 Score=56.33 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=36.9
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
|+++++|+|.| ++||||+...|...|.++|++|..|.-...
T Consensus 1 m~~Il~ivG~k-~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 1 MMKILGIVGYK-NSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CCcEEEEEecC-CCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 67899999665 569999999999999999999999988766
No 129
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.46 E-value=0.00043 Score=65.51 Aligned_cols=40 Identities=30% Similarity=0.287 Sum_probs=35.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
|++|+|+|.| |+||||+...|...|.++|++|.+|.-+-+
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~rG~rVavIKH~hH 40 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAARGFSVSTVKHSHH 40 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 5799999876 999999999999999999999999887543
No 130
>PRK08233 hypothetical protein; Provisional
Probab=97.44 E-value=0.0011 Score=55.61 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=29.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+|+|.|+. |+||||+|..||..+. +..++..|.+..
T Consensus 3 ~~iI~I~G~~-GsGKtTla~~L~~~l~--~~~~~~~d~~~~ 40 (182)
T PRK08233 3 TKIITIAAVS-GGGKTTLTERLTHKLK--NSKALYFDRYDF 40 (182)
T ss_pred ceEEEEECCC-CCCHHHHHHHHHhhCC--CCceEEECCEEc
Confidence 4788888766 9999999999998874 347777777754
No 131
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.43 E-value=0.00062 Score=59.55 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=34.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+.+.++.++ +.+|+|||+++.++|...++.|.+|+++|++
T Consensus 21 ~~g~i~~i~-G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIY-GPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 334555555 7999999999999999999999999999999
No 132
>PHA02542 41 41 helicase; Provisional
Probab=97.41 E-value=0.0002 Score=69.45 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=38.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD 95 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~ 95 (340)
.-+.+.++..|+||||+|.|+|..+++.|++|++++++.....+.
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~ 234 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIA 234 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHH
Confidence 456777799999999999999999998899999999998755443
No 133
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.31 E-value=0.0012 Score=57.23 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=44.5
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~ 230 (340)
.+.+.|+|+|+... ......+..+|.+++|+...........+.++.+...+ ..+.+|+|+.+.
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~-~p~iiviNK~D~ 135 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEG-LPIVLVINKIDR 135 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcC-CCEEEEEECccc
Confidence 47889999999653 34566778999999999875443233344445554444 457799999986
No 134
>PRK12740 elongation factor G; Reviewed
Probab=97.30 E-value=0.0018 Score=66.11 Aligned_cols=90 Identities=21% Similarity=0.207 Sum_probs=62.6
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
++++++||||+... .....++..+|.+++|+++..........+++.+...+.+ ..+|+|+++.... ......++
T Consensus 59 ~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~--~~~~~~~~ 135 (668)
T PRK12740 59 GHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGA--DFFRVLAQ 135 (668)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCC--CHHHHHHH
Confidence 58999999999754 4456678899999999998766555556666666665554 5579999986531 12234567
Q ss_pred HHHHhCCcee-EEecC
Q 047623 244 IQEMLGLALL-GVIPE 258 (340)
Q Consensus 244 i~~~~g~~v~-~~Ip~ 258 (340)
+.+.++.+.+ ..+|.
T Consensus 136 l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 136 LQEKLGAPVVPLQLPI 151 (668)
T ss_pred HHHHHCCCceeEEecc
Confidence 7777887654 44553
No 135
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.29 E-value=0.0018 Score=56.98 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=35.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.++.++ +..|+|||+++.++++..+++|.+|++++++..
T Consensus 23 ~~g~~~~i~-G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 23 PFPSLILIE-GDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred cCCcEEEEE-CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 344566666 799999999999999988889999999999754
No 136
>PRK00089 era GTPase Era; Reviewed
Probab=97.27 E-value=0.0067 Score=55.26 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=42.2
Q ss_pred CCCEEEEcCCCCCCH----------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA----------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
+++++++|||+.... .....+..+|.++++++.+..--.....+.+.+...+ ..+.+|+|+++..
T Consensus 52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~-~pvilVlNKiDl~ 126 (292)
T PRK00089 52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVK-TPVILVLNKIDLV 126 (292)
T ss_pred CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcC-CCEEEEEECCcCC
Confidence 478899999985321 1233567899999999886522233345555555333 3577999999864
No 137
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.24 E-value=0.00084 Score=54.21 Aligned_cols=38 Identities=32% Similarity=0.338 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEE-EEecCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVV-AIDADV 89 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vl-liD~D~ 89 (340)
++|.|.|.| |+||||++..|...|.++|++|+ +.|.|.
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 478899876 89999999999999999999999 888887
No 138
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.21 E-value=0.0036 Score=52.48 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=46.3
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.++++++|+|+... ......+..+|.++++++..........+.+..+.. ....+.+++|+.+..
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~i~iv~nK~D~~ 127 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-GGLPIIVAINKIDRV 127 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-CCCCeEEEEECCCCc
Confidence 47899999998442 344556778999999998875544445555666655 335688999998864
No 139
>COG1159 Era GTPase [General function prediction only]
Probab=97.15 E-value=0.0052 Score=55.02 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=76.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
+..+++. ++..+||||+.-+| .|.++.++.--+| .+-....|+..
T Consensus 6 sGfVaIi-GrPNvGKSTLlN~l------~G~KisIvS~k~Q-TTR~~I~GI~t--------------------------- 50 (298)
T COG1159 6 SGFVAII-GRPNVGKSTLLNAL------VGQKISIVSPKPQ-TTRNRIRGIVT--------------------------- 50 (298)
T ss_pred EEEEEEE-cCCCCcHHHHHHHH------hcCceEeecCCcc-hhhhheeEEEE---------------------------
Confidence 4456777 89999999998665 3789999876666 22222111110
Q ss_pred ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC------C----HHHHHHHhcCCeEEEEeCCC
Q 047623 130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI------D----AGFITAITPANEAVLVTTPD 199 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~------~----~~~~~~l~~ad~viiv~~~~ 199 (340)
.+++.+|++|||+-- + .....++..+|.++.+++.+
T Consensus 51 ----------------------------------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~ 96 (298)
T COG1159 51 ----------------------------------TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDAD 96 (298)
T ss_pred ----------------------------------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecc
Confidence 114889999999832 1 22345667899999999987
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
..--..-..+++.+.. ......+++|+++.-.
T Consensus 97 ~~~~~~d~~il~~lk~-~~~pvil~iNKID~~~ 128 (298)
T COG1159 97 EGWGPGDEFILEQLKK-TKTPVILVVNKIDKVK 128 (298)
T ss_pred ccCCccHHHHHHHHhh-cCCCeEEEEEccccCC
Confidence 7444466667777766 2246779999998654
No 140
>PRK04296 thymidine kinase; Provisional
Probab=97.11 E-value=0.012 Score=50.17 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
+.++.++ +.-|+||||.+..++..++.+|.+|+++.
T Consensus 2 g~i~lit-G~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 2 AKLEFIY-GAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred cEEEEEE-CCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4445554 66799999999999999999999999993
No 141
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.11 E-value=0.011 Score=48.03 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=42.0
Q ss_pred CCCEEEEcCCCCCCH----------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA----------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.++++++|+|+.... .....+..+|.+++++............+.+.+...+ ..+.+|+|+.+..
T Consensus 50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~-~~~iiv~nK~Dl~ 124 (168)
T cd04163 50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSK-TPVILVLNKIDLV 124 (168)
T ss_pred CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhC-CCEEEEEEchhcc
Confidence 378999999884321 1223456789999998887653333445555555433 3567999999764
No 142
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.10 E-value=0.0076 Score=59.43 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=58.5
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
.+.+.++|||+.. ...+...+..+|.+++|++....--..+.++.+.++..+.+ +.+++|+.+..... ......+
T Consensus 78 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~--~~~~l~~ 154 (526)
T PRK00741 78 DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDGRE--PLELLDE 154 (526)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcccccC--HHHHHHH
Confidence 4788999999964 33456678899999999988654444556666766666655 67899999864311 1122567
Q ss_pred HHHHhCCcee
Q 047623 244 IQEMLGLALL 253 (340)
Q Consensus 244 i~~~~g~~v~ 253 (340)
+++.++.+++
T Consensus 155 i~~~l~~~~~ 164 (526)
T PRK00741 155 IEEVLGIACA 164 (526)
T ss_pred HHHHhCCCCe
Confidence 7777886544
No 143
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.10 E-value=0.0026 Score=53.62 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=33.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+..+..|+|||+++.+++...++.|.+|+++.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 4556899999999999999999999999999999876
No 144
>COG2403 Predicted GTPase [General function prediction only]
Probab=97.09 E-value=0.0042 Score=57.03 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=36.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
....+|.|++..-|+|||+++.-+|..|.++|++|+.+-.
T Consensus 124 ~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 124 LEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred hcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 3447899999999999999999999999999999999976
No 145
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.07 E-value=0.0012 Score=57.75 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=34.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
|++|.|+|.+ |+||||++..|+..|.++|++|.++..+
T Consensus 1 m~vi~ivG~~-gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGFK-DSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECCC-CChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 5789999885 9999999999999999999999999754
No 146
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.07 E-value=0.008 Score=59.31 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=58.5
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
++.+.++|||+.. .......+..+|.+++|++....-...+..+.+.++..+. .+.+++|+.+..... ...-..+
T Consensus 79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~-PiivviNKiD~~~~~--~~~ll~~ 155 (527)
T TIGR00503 79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDT-PIFTFMNKLDRDIRD--PLELLDE 155 (527)
T ss_pred CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCC-CEEEEEECccccCCC--HHHHHHH
Confidence 5888999999964 3345667889999999998865434445566666655454 477899999864311 1122456
Q ss_pred HHHHhCCcee-EEec
Q 047623 244 IQEMLGLALL-GVIP 257 (340)
Q Consensus 244 i~~~~g~~v~-~~Ip 257 (340)
+++.++...+ ..+|
T Consensus 156 i~~~l~~~~~~~~~P 170 (527)
T TIGR00503 156 VENELKINCAPITWP 170 (527)
T ss_pred HHHHhCCCCccEEEE
Confidence 7777776533 3344
No 147
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.05 E-value=0.0014 Score=54.91 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=35.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.+|.++ +-.|+||||+|..||..+...|.++.++|.|..
T Consensus 2 ~~g~~i~~~-G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 2 QRGVTVWFT-GLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 345677777 677899999999999999988999999999864
No 148
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.04 E-value=0.013 Score=51.56 Aligned_cols=40 Identities=18% Similarity=0.405 Sum_probs=34.3
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.++.+. +..|+||||++.+++..+++.|.++++++++..
T Consensus 24 g~~~~i~-G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~ 63 (230)
T PRK08533 24 GSLILIE-GDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT 63 (230)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4456665 788999999999999999999999999998865
No 149
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.03 E-value=0.0016 Score=53.82 Aligned_cols=40 Identities=28% Similarity=0.293 Sum_probs=36.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
|++|.|.|.+ |+||||++..|...|..+|++|..|..|..
T Consensus 1 m~vi~i~G~~-gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 1 MKVIGFVGYS-GSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 5789999775 999999999999999999999999988765
No 150
>PLN03127 Elongation factor Tu; Provisional
Probab=97.01 E-value=0.018 Score=55.69 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=49.8
Q ss_pred CCCEEEEcCCCCCCHH--HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDAG--FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~~--~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.++++|||+..... +...+..+|.++++++.+..-.....+.+..+...+.+.+.+++|+++.-
T Consensus 123 ~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence 4678999999965322 23455679999999998765456677888888888877777899999864
No 151
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.01 E-value=0.0052 Score=56.47 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.++.|.| ..|+||||+|.+++...++.|.+|++||+...
T Consensus 53 p~G~iteI~G-~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~ 94 (321)
T TIGR02012 53 PRGRIIEIYG-PESSGKTTLALHAIAEAQKAGGTAAFIDAEHA 94 (321)
T ss_pred cCCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCcEEEEcccch
Confidence 4556777775 58999999999999999999999999999854
No 152
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.99 E-value=0.0014 Score=53.61 Aligned_cols=39 Identities=33% Similarity=0.361 Sum_probs=33.6
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|-++ +-.|+||||+|..|...|.+.|.+|.++|.|.-
T Consensus 3 ~vIwlt-GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 3 FVIWLT-GLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 456666 788999999999999999999999999999964
No 153
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.99 E-value=0.012 Score=51.41 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=54.9
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccH
Q 047623 166 SPDFILIDCPAGIDA--GFITAIT--PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSV 241 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~ 241 (340)
.+.+.+||+|+.... .+...+. .+|.+++++..+..-.....++++.+...+.+ +.+++|+++.-. ........
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~-~~~~~~~~ 160 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLAP-ANILQETL 160 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccccC-HHHHHHHH
Confidence 578999999986432 2233343 58999999988766667777888888887776 679999998632 11122234
Q ss_pred HHHHHHhC
Q 047623 242 LDIQEMLG 249 (340)
Q Consensus 242 ~~i~~~~g 249 (340)
.++.+.+.
T Consensus 161 ~~l~~~L~ 168 (224)
T cd04165 161 KDLKRILK 168 (224)
T ss_pred HHHHHHhc
Confidence 45555554
No 154
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.99 E-value=0.004 Score=55.01 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=32.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHH------------CCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLAR------------LGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~------------~g~~VlliD~D~~ 90 (340)
.++++.+.||+|||+++.++|..+|. .+.+|++++++..
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~ 52 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP 52 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCC
Confidence 46777899999999999999998873 3568999988865
No 155
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.97 E-value=0.006 Score=56.15 Aligned_cols=42 Identities=31% Similarity=0.351 Sum_probs=35.7
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.++++-|. +..|+||||+|.+++...++.|.+|++||+...
T Consensus 53 p~G~iteI~-Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~ 94 (325)
T cd00983 53 PKGRIIEIY-GPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA 94 (325)
T ss_pred cCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEECcccc
Confidence 445666666 579999999999999999999999999998754
No 156
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0011 Score=54.66 Aligned_cols=56 Identities=29% Similarity=0.394 Sum_probs=45.8
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcC
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLEN 102 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~ 102 (340)
..+.+.+|=++ +=.|+||||+|..|...|.++|++|-++|.|.-..+++.-+|...
T Consensus 19 ~~~~~~viW~T-GLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~ 74 (197)
T COG0529 19 KGQKGAVIWFT-GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSR 74 (197)
T ss_pred hCCCCeEEEee-cCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCCh
Confidence 34556788888 566889999999999999999999999999986577776666544
No 157
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.93 E-value=0.0075 Score=48.81 Aligned_cols=65 Identities=22% Similarity=0.200 Sum_probs=42.7
Q ss_pred CCCEEEEcCCCCCCH----------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA----------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+++.|+|+|+.... .....+..+|.+++++............+.+.+...+ ..+.+|+|+.+..
T Consensus 44 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~piiiv~nK~D~~ 118 (157)
T cd01894 44 GREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSK-KPVILVVNKVDNI 118 (157)
T ss_pred CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcC-CCEEEEEECcccC
Confidence 478899999996542 1234567799999998875432222234555555444 5678999999764
No 158
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.91 E-value=0.0038 Score=51.32 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=27.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
|-|. +..|.||||.|..+|...+.+|++|+++-+
T Consensus 5 i~vy-~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 5 IQVY-TGNGKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4444 333999999999999999999999999644
No 159
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.89 E-value=0.0071 Score=62.12 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=47.9
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
+|++.++|||+.. ......++..+|.+++|+.....-......+.+.+...+.+.+ +++|+++..
T Consensus 85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~ 151 (720)
T TIGR00490 85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDRL 151 (720)
T ss_pred ceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhcc
Confidence 5899999999964 3456778899999999998755433444556666555566554 999999875
No 160
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.84 E-value=0.0026 Score=55.32 Aligned_cols=41 Identities=27% Similarity=0.299 Sum_probs=34.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++.|. +.+|+||||++.++|..++..|.+|+++|++..
T Consensus 18 ~g~i~~i~-G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 18 RGTVTQVY-GPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 34555555 799999999999999999999999999998854
No 161
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.006 Score=57.00 Aligned_cols=39 Identities=28% Similarity=0.492 Sum_probs=34.2
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+...++..|+||||+-.++|..+|+++ +||+|-...+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES 131 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEES 131 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcC
Confidence 45666779999999999999999999999 9999987755
No 162
>PRK07667 uridine kinase; Provisional
Probab=96.82 E-value=0.0031 Score=53.83 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=35.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|++. +-+|+||||+|..|+..+.+.|.+|.++++|..
T Consensus 18 ~iIgI~-G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGID-GLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 677776 788999999999999999999999999999964
No 163
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.80 E-value=0.0055 Score=53.57 Aligned_cols=40 Identities=28% Similarity=0.276 Sum_probs=31.8
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 90 (340)
+.++.+. +..|+|||+++.++++..+++ |.+|+++.++..
T Consensus 19 gs~~li~-G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 19 GSVVLIS-GPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred CcEEEEE-eCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence 3455555 788999999999999999988 999999999866
No 164
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=96.80 E-value=0.013 Score=54.14 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=38.1
Q ss_pred CCCCEEEEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 47 GETPRVVVITSG-KGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 47 ~~~~~iI~v~s~-kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
....++|+|.|- -||+|||-++.-||.+|.++|++|.++-=.+.
T Consensus 32 ~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 32 RLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred CCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 345579999885 58999999999999999999999999977765
No 165
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.80 E-value=0.008 Score=58.18 Aligned_cols=65 Identities=22% Similarity=0.316 Sum_probs=51.1
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhH-------HHHHHHHHHHHhcCCCceEEEEecccC
Q 047623 166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSL-------RDADRVTGLLECDGIRDIKMVVNRVRT 230 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~vviN~~~~ 230 (340)
++.+.|||+|+.... .+...+..+|.+++|+++..... ..+.+.+..+...+.+.+.+++|+.+.
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDD 157 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 588999999996532 33556778999999999875432 467778888888899889999999984
No 166
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=96.80 E-value=0.023 Score=52.86 Aligned_cols=192 Identities=18% Similarity=0.227 Sum_probs=98.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC-Cccccceecccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD-CRLDQALVRDKR 127 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~ 127 (340)
|++++.+.+...|+|||+++.+|++.|.++|.+|.++--=. ...+.+.. .......... ....- .
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~kPI~------~~~~~~~~--~~~e~~~~~~~~~l~~-----~- 66 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFKPIG------TRTGKDAD--DLTEEDIRATSSSLTY-----A- 66 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEEeccc------cccCCccc--hhHHHHHHHhhhhccc-----C-
Confidence 68999999999999999999999999999999999974331 11111110 0111111110 00000 0
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCC-C--------CCHHHHHHHhcCCeEEEEeCC
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPA-G--------IDAGFITAITPANEAVLVTTP 198 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~-~--------~~~~~~~~l~~ad~viiv~~~ 198 (340)
+. ++.............+..+..+++...+..+ ..|++++..-- . ++......+. |. ++++..+
T Consensus 67 -~~---~~~~~ae~L~~~~~~d~l~e~i~~~y~e~~~-~~~~vv~~g~~~~~~~~~~~~ln~~iA~~Ln-a~-~vlva~~ 139 (354)
T COG0857 67 -EP---LVLSFAEVLLSTGQDDVLLEEILANYAELAK-DADVVVVEGDVPTREGPYALDLNYEIAKNLN-AA-AVLVARA 139 (354)
T ss_pred -cc---cchhhHHHHhccccchHHHHHHHHHHHHHhc-cCceEEeccceeccccCccccccHHHHhhcC-cc-hhhcccc
Confidence 00 0000000111111233345556666665433 45555554422 1 1111112222 33 5556666
Q ss_pred ChhhHHHHHHHHHHHHh----cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHH
Q 047623 199 DITSLRDADRVTGLLEC----DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEV 262 (340)
Q Consensus 199 ~~~s~~~~~~~~~~l~~----~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~ 262 (340)
...+......-++.... .+....++|+|+...... ........++.+..+..+.+.+|.++-+
T Consensus 140 ~~~~~~~~~~~i~~~~~~~~~~~~~l~gVv~N~~~~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~~ll 206 (354)
T COG0857 140 LLVTPYELKSRVELALAAFGAAGNNLAGVVINNAPVDEA-GRTEDLLAEFLESSGIAVVGVLPPNRLL 206 (354)
T ss_pred ccCChhhhhhHHHHHHHHhcccCCceEEEEecCCChhhh-hhhhhHHHHHhhhccccccccCCHHHHh
Confidence 66666665554444432 233678999996655432 2122234455555666777888866554
No 167
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.75 E-value=0.007 Score=54.45 Aligned_cols=92 Identities=17% Similarity=0.241 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
.+++.|+|||+..+ .....++..+|.+++|+.++.........+.+.+...+.+ ..+++|+.+.... .......+
T Consensus 63 ~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~~--~~~~~~~~ 139 (268)
T cd04170 63 GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIP-RIIFINKMDRERA--DFDKTLAA 139 (268)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCccCCC--CHHHHHHH
Confidence 58899999999654 3456788899999999998876666666777777666554 5579999997642 12234567
Q ss_pred HHHHhCCcee-EEecCCh
Q 047623 244 IQEMLGLALL-GVIPEDS 260 (340)
Q Consensus 244 i~~~~g~~v~-~~Ip~d~ 260 (340)
+++.++.+++ ..+|...
T Consensus 140 l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 140 LQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHhCCCeEEEEecccC
Confidence 7788887766 5677544
No 168
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.69 E-value=0.0037 Score=53.55 Aligned_cols=42 Identities=31% Similarity=0.389 Sum_probs=36.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+.+|.++ +..|+||||++..|+..+...|..+.++|.|..
T Consensus 22 ~~~~~i~i~-G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFT-GLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 455778877 567999999999999999988999999998864
No 169
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.68 E-value=0.067 Score=49.17 Aligned_cols=42 Identities=26% Similarity=0.197 Sum_probs=35.0
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.++++-+.|. .++||||++.++...+.+.|..+++||....
T Consensus 51 p~G~ivEi~G~-~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ 92 (322)
T PF00154_consen 51 PRGRIVEIYGP-ESSGKTTLALHAIAEAQKQGGICAFIDAEHA 92 (322)
T ss_dssp ETTSEEEEEES-TTSSHHHHHHHHHHHHHHTT-EEEEEESSS-
T ss_pred ccCceEEEeCC-CCCchhhhHHHHHHhhhcccceeEEecCccc
Confidence 55789999976 4789999999999998888999999999754
No 170
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.049 Score=49.05 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=34.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.|+=|+ +-.|+||||+|.+++......|.++++||..-.
T Consensus 58 ~~g~ItEiy-G~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~ 99 (279)
T COG0468 58 PRGRITEIY-GPESSGKTTLALQLVANAQKPGGKAAFIDTEHA 99 (279)
T ss_pred ccceEEEEe-cCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 445566666 677889999999999999999999999998743
No 171
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.66 E-value=0.014 Score=51.14 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=34.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.++.+. +..|+|||+++.+++...++.|.+|++++++..
T Consensus 18 ~~G~~~~i~-G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVT-GEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEE-CCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 345566666 688999999999999888888999999998755
No 172
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.65 E-value=0.0097 Score=51.74 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=25.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.|. ++.|+||||+|.+|+ .++++++.|..
T Consensus 13 ~~~liy-G~~G~GKtt~a~~~~-------~~~~~~~~d~~ 44 (220)
T TIGR01618 13 NMYLIY-GKPGTGKTSTIKYLP-------GKTLVLSFDMS 44 (220)
T ss_pred cEEEEE-CCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence 345555 899999999998874 37999999964
No 173
>PRK12739 elongation factor G; Reviewed
Probab=96.63 E-value=0.024 Score=58.07 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=60.6
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
++.++++|||+.. ...+..++..+|.+++|++....--.....+++.+...+.+. .+++|+.+.... ......++
T Consensus 72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~-iv~iNK~D~~~~--~~~~~~~~ 148 (691)
T PRK12739 72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPR-IVFVNKMDRIGA--DFFRSVEQ 148 (691)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCCC--CHHHHHHH
Confidence 5889999999854 234466778899999999986554455567777777777665 599999997531 12234567
Q ss_pred HHHHhCCcee-EEec
Q 047623 244 IQEMLGLALL-GVIP 257 (340)
Q Consensus 244 i~~~~g~~v~-~~Ip 257 (340)
+.+.++.... ..+|
T Consensus 149 i~~~l~~~~~~~~iP 163 (691)
T PRK12739 149 IKDRLGANAVPIQLP 163 (691)
T ss_pred HHHHhCCCceeEEec
Confidence 7777775432 3444
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.62 E-value=0.022 Score=55.06 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=42.2
Q ss_pred CCCEEEEcCCCCCC-H---------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID-A---------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~-~---------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+++.|+|||+... . ....++..+|.++++++....-...-..+.+.++..+ ..+.+|+|+++..
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~-~piilv~NK~D~~ 122 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSN-KPVILVVNKVDGP 122 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcC-CcEEEEEECccCc
Confidence 36789999998543 1 1234567899999999886532222234555565544 4577999999853
No 175
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.62 E-value=0.016 Score=49.47 Aligned_cols=108 Identities=17% Similarity=0.274 Sum_probs=63.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
+.+..+.+- +.-|+|||.++..+++-+-..|++|.++-.... ...+....+.-++++.+.+ -
T Consensus 26 P~GsL~lIE-Gd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T---~refi~qm~sl~ydv~~~~--------------l 87 (235)
T COG2874 26 PVGSLILIE-GDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELT---VREFIKQMESLSYDVSDFL--------------L 87 (235)
T ss_pred ccCeEEEEE-CCCCccHHHHHHHHHHHHHhCCceEEEEEechh---HHHHHHHHHhcCCCchHHH--------------h
Confidence 445566665 666899999999999999999999999976532 2222211111123332222 1
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCC
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPA 176 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~ 176 (340)
+..+.++|.+..............+..+++..+. .+.|+||||+=.
T Consensus 88 ~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~---~~~dViIIDSls 133 (235)
T COG2874 88 SGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKR---WEKDVIIIDSLS 133 (235)
T ss_pred cceeEEEEecccccccChHHHHHHHHHHHhhHHh---hcCCEEEEeccc
Confidence 2556666654333222222223334455555553 479999999965
No 176
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.62 E-value=0.022 Score=51.26 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=41.6
Q ss_pred CCCEEEEcCCCCCCH----------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA----------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.++++|||+.... .....+..+|.++++++.+...... ..+.+.+...+ ..+.+|+|+.+..
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~-~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLK-RPVVLTRNKLDNK 120 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcC-CCEEEEEECeeCC
Confidence 356899999984321 1234567899999999886543332 44555555544 3467999999863
No 177
>CHL00071 tufA elongation factor Tu
Probab=96.59 E-value=0.025 Score=54.25 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=50.2
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.++++|+|+... ..+...+..+|.++++++.+..-.....+.+..+...+.+.+.+++|+.+.-
T Consensus 74 ~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV 141 (409)
T ss_pred CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC
Confidence 46789999999432 2234566789999999988765556677778888877877788899999864
No 178
>PRK06696 uridine kinase; Validated
Probab=96.58 E-value=0.0048 Score=53.93 Aligned_cols=43 Identities=26% Similarity=0.259 Sum_probs=35.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL 91 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 91 (340)
+...+|+|. +.+|+||||+|..|+..|...|.+|+.+.+|-..
T Consensus 20 ~~~~iI~I~-G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAID-GITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 344566666 7889999999999999999889999998887653
No 179
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=96.57 E-value=0.013 Score=47.85 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=41.5
Q ss_pred CCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
+.+.++|+|+.... .....+..+|.++++++.+..-.......+..++..+...+.+++|+.+-.
T Consensus 51 ~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 51 KRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred cEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 57789999985422 223345679999999988642223333333444444555688999999753
No 180
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=96.56 E-value=0.04 Score=50.00 Aligned_cols=164 Identities=16% Similarity=0.220 Sum_probs=88.6
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
-.+++|++.|+-.-+||=|++..|...+.++|.++..+-...+ + ++-... +. .++.
T Consensus 110 ~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQT-G----imia~~--Gv----------~iDa------- 165 (301)
T PF07755_consen 110 VKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQT-G----IMIAGY--GV----------PIDA------- 165 (301)
T ss_dssp -SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHH-H----HHCHSE--C------------GGG-------
T ss_pred CCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCc-e----EEEecC--Ce----------eccc-------
Confidence 4679999999999999999999999999999999998866544 1 110000 00 0000
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH-----HHHHH--hcCCeEEEEeCCCh
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG-----FITAI--TPANEAVLVTTPDI 200 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~-----~~~~l--~~ad~viiv~~~~~ 200 (340)
...++-......++-...+ +.|+|||..-+++... +...| ...|.+|+...|..
T Consensus 166 ---------------v~~DFvaGavE~~v~~~~~----~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r 226 (301)
T PF07755_consen 166 ---------------VPSDFVAGAVEALVPEAAE----EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGR 226 (301)
T ss_dssp ---------------SBGGGHHHHHHHHHHHHCC----C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-
T ss_pred ---------------hhhhhHHHHHHHHHHhhCc----CCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCc
Confidence 0111222333333333332 3599999999976432 34444 46899999999843
Q ss_pred hhH--------HHHHHHHHHHHhcC-----CCceEEEEecccCCcccccccccHHHHHHHhCCceeEEe
Q 047623 201 TSL--------RDADRVTGLLECDG-----IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVI 256 (340)
Q Consensus 201 ~s~--------~~~~~~~~~l~~~~-----~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~I 256 (340)
..+ ..+.+.++.++... .+.+++-+|-..-+. .+.....+++++.+|+|+...+
T Consensus 227 ~~~~~~p~~~ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~~--~e~~~~~~~~~~e~glPv~Dp~ 293 (301)
T PF07755_consen 227 KHRDGFPHYPIPPLEEEIELIEALAGTKPPAKVVGISLNTSGLSE--EEAKAAIERIEEELGLPVTDPL 293 (301)
T ss_dssp SC-TTSTTSC---HHHHHHHHHHCCCGC---EEEEEECC-TTS-H--HHHHHHHHHHHHHH-S-EE-HH
T ss_pred ccccCCCcCCCCCHHHHHHHHHHhhccCCCccEEEEEEECCCCCH--HHHHHHHHHHHHHHCCCeeecc
Confidence 332 23344444444322 236788888766543 2233457788899999887544
No 181
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=96.56 E-value=0.065 Score=46.88 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=58.5
Q ss_pred CCCCEEEEcCCCCCCH----HHHHHHhc-------C-----CeEEEEeC--CChhhHHHHHHHHHHHHhcCCCceEEEEe
Q 047623 165 GSPDFILIDCPAGIDA----GFITAITP-------A-----NEAVLVTT--PDITSLRDADRVTGLLECDGIRDIKMVVN 226 (340)
Q Consensus 165 ~~~D~VIiD~~~~~~~----~~~~~l~~-------a-----d~viiv~~--~~~~s~~~~~~~~~~l~~~~~~~~~vviN 226 (340)
..+|++|+..++..++ ++.+++++ - +..++|.- ....--.-++..++.+++.|+..-++|+|
T Consensus 131 ~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcR 210 (255)
T cd03113 131 SGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCR 210 (255)
T ss_pred CCCCEEEEEeCCccccccccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEe
Confidence 4799999999996533 33444421 1 22233322 24445566788899999999999999999
Q ss_pred cccCCcccccccccHHHHHHHhCCceeEEecC
Q 047623 227 RVRTDMIKGEDMMSVLDIQEMLGLALLGVIPE 258 (340)
Q Consensus 227 ~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~ 258 (340)
.-.+- .....+.++...+++..+.++.
T Consensus 211 se~pL-----~e~~keKIAlFcnVpve~VI~~ 237 (255)
T cd03113 211 SEKPL-----PPEIREKIALFCDVPPEAVISA 237 (255)
T ss_pred CCCCC-----chHHHHHHHHhcCCCHHHeeec
Confidence 82221 2234567788888888777664
No 182
>PRK15494 era GTPase Era; Provisional
Probab=96.56 E-value=0.019 Score=53.62 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=39.4
Q ss_pred CCCEEEEcCCCCCCH-------HH---HHHHhcCCeEEEEeCCChhhHHHH-HHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA-------GF---ITAITPANEAVLVTTPDITSLRDA-DRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~-------~~---~~~l~~ad~viiv~~~~~~s~~~~-~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.++++|||+.... .. ...+..||.++++++... ++... ..+++.+...+... .+|+|+++..
T Consensus 99 ~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~-IlViNKiDl~ 173 (339)
T PRK15494 99 DTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVP-IFLLNKIDIE 173 (339)
T ss_pred CeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCE-EEEEEhhcCc
Confidence 356799999985321 11 123568999999987643 22222 34556665555444 4789999863
No 183
>PRK00049 elongation factor Tu; Reviewed
Probab=96.56 E-value=0.021 Score=54.41 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=49.2
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.++++|||+... ..+...+..+|.++++++....-.....++++.+...+.+.+.+++|+++.-
T Consensus 74 ~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCc
Confidence 46789999999532 2234456789999999998765556667778888877777666789999864
No 184
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.55 E-value=0.013 Score=57.47 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=35.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+++.++..|+||||++.+++...+++|.+|+++-++..
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES 302 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 3455566899999999999999999999999999999876
No 185
>PRK09354 recA recombinase A; Provisional
Probab=96.55 E-value=0.019 Score=53.28 Aligned_cols=42 Identities=26% Similarity=0.235 Sum_probs=36.0
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.++-|.| ..|+||||++.+++...++.|.++++||+.-.
T Consensus 58 p~G~IteI~G-~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s 99 (349)
T PRK09354 58 PRGRIVEIYG-PESSGKTTLALHAIAEAQKAGGTAAFIDAEHA 99 (349)
T ss_pred cCCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCcEEEECCccc
Confidence 4556777775 79999999999999999999999999999864
No 186
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.53 E-value=0.011 Score=57.21 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+...++..|+||||++..+|..++++|.+|+++++...
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES 119 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence 355556899999999999999999988999999998754
No 187
>PRK00007 elongation factor G; Reviewed
Probab=96.52 E-value=0.035 Score=56.92 Aligned_cols=90 Identities=18% Similarity=0.128 Sum_probs=62.7
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
++.+.+||||+..+. ....++..+|.+++|++....--.....+++.+...+.+.+ +++|+++.... ......++
T Consensus 74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~--~~~~~~~~ 150 (693)
T PRK00007 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRTGA--DFYRVVEQ 150 (693)
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCCCC--CHHHHHHH
Confidence 588999999996533 24557788999999998766555666778888887777654 99999997531 12234567
Q ss_pred HHHHhCCcee-EEecC
Q 047623 244 IQEMLGLALL-GVIPE 258 (340)
Q Consensus 244 i~~~~g~~v~-~~Ip~ 258 (340)
+.+.++.... ..||-
T Consensus 151 i~~~l~~~~~~~~ipi 166 (693)
T PRK00007 151 IKDRLGANPVPIQLPI 166 (693)
T ss_pred HHHHhCCCeeeEEecC
Confidence 7777776432 34443
No 188
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.50 E-value=0.012 Score=55.57 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.+.++..|+||||++..+|..+++.|.+|++++....
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs 121 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES 121 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence 355556899999999999999999999899999998743
No 189
>PRK05973 replicative DNA helicase; Provisional
Probab=96.50 E-value=0.0047 Score=54.34 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=35.6
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+.+.++..|+|||+++.++|...++.|.+|+++.++..
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 3456666999999999999999999999999999999976
No 190
>PRK15453 phosphoribulokinase; Provisional
Probab=96.49 E-value=0.0057 Score=54.90 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=37.6
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLR 92 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 92 (340)
+...+|+|+ +..|+||||++..|+..|.+.+.++.+++.|....
T Consensus 3 ~k~piI~It-G~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVT-GSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 445788887 67789999999999999988888999999997643
No 191
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.49 E-value=0.0067 Score=52.29 Aligned_cols=41 Identities=34% Similarity=0.404 Sum_probs=35.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+.+.++.++ +..|+|||+++.+++...++.|.+|++||++.
T Consensus 10 ~~g~i~~i~-G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIY-GPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 345666666 68999999999999999999999999999984
No 192
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.48 E-value=0.0034 Score=53.26 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=32.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLR 92 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 92 (340)
+.|. +-.|+||||.+.++-.+.-.-|.++-+|.+||..-
T Consensus 6 ~lV~-GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae 44 (273)
T KOG1534|consen 6 QLVM-GPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAE 44 (273)
T ss_pred EEEE-ccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHH
Confidence 3444 56688999999999999998999999999998733
No 193
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.43 E-value=0.074 Score=43.75 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=25.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+..+--|+||||+...+.... .|.++.++-.+.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~ 36 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEF 36 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCC
Confidence 3445777999999999887653 478888876664
No 194
>PF13479 AAA_24: AAA domain
Probab=96.43 E-value=0.018 Score=49.94 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.++|. +..|+||||+|..+ -++++||+|..
T Consensus 5 ~~lIy-G~~G~GKTt~a~~~--------~k~l~id~E~g 34 (213)
T PF13479_consen 5 KILIY-GPPGSGKTTLAASL--------PKPLFIDTENG 34 (213)
T ss_pred EEEEE-CCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence 44444 88999999999887 59999999965
No 195
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.42 E-value=0.01 Score=57.47 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=34.4
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+.+.++..|+||||++.++|..+++.|.+|++++....
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES 133 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence 3455666999999999999999999999889999998754
No 196
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.42 E-value=0.0047 Score=54.69 Aligned_cols=35 Identities=37% Similarity=0.382 Sum_probs=31.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
-.+..+++|+|||+++..+|..+.+.|++|+++++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 34566899999999999999999999999999954
No 197
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.41 E-value=0.06 Score=51.09 Aligned_cols=65 Identities=22% Similarity=0.276 Sum_probs=45.7
Q ss_pred CCCEEEEcCCCCC--C--H-------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--D--A-------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~--~-------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.+|||++-. + . .+..++..||.++.+++....-...=..+.+.++ ...+.+.+|+|+++..
T Consensus 50 ~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr-~~~kpviLvvNK~D~~ 125 (444)
T COG1160 50 GREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR-RSKKPVILVVNKIDNL 125 (444)
T ss_pred CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-hcCCCEEEEEEcccCc
Confidence 4778999999844 2 1 2345678899999999886533333345666666 3446788999999875
No 198
>PLN00043 elongation factor 1-alpha; Provisional
Probab=96.40 E-value=0.025 Score=54.80 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=50.8
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhH-------HHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSL-------RDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++-+.|||+|+..+. .+...+..+|.+++|+......+ ..+++....+...+.+.+.+++|+.+..
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 578899999996433 34556788999999999876544 3666777777778888889999999853
No 199
>PRK12736 elongation factor Tu; Reviewed
Probab=96.39 E-value=0.026 Score=53.82 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=48.8
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.++++|+|+... ..+...+..+|.+++|+..+..-.....+.+..+...+.+.+.+++|+.+.-
T Consensus 74 ~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc
Confidence 46789999999542 2224445678999999998765455666777777777877788899999863
No 200
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.39 E-value=0.011 Score=49.27 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=35.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.++++++|+ +..|+||||++..|...|..+|++|..|-.+..
T Consensus 4 ~~~~ii~iv-G~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 4 TMIPLLAIA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred CCceEEEEE-CCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 456777887 568999999999999999999999999987654
No 201
>PLN03126 Elongation factor Tu; Provisional
Probab=96.38 E-value=0.054 Score=52.82 Aligned_cols=66 Identities=18% Similarity=0.318 Sum_probs=50.5
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.+.+||+|+... ..+...+..+|.+++|++....-.....+.+..+...+.+.+.+++|+.+.-
T Consensus 143 ~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 143 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 210 (478)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 46789999998543 2335566789999999987765556667777778878887788999999863
No 202
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.38 E-value=0.015 Score=50.65 Aligned_cols=42 Identities=31% Similarity=0.319 Sum_probs=34.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC------CcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLG------FSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g------~~VlliD~D~~ 90 (340)
+.+.++.+. +..|+|||+++.++|...+..| .+|++||.+..
T Consensus 17 ~~g~v~~I~-G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 17 PTGRITEIF-GEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred cCCcEEEEe-CCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 445666666 6889999999999999988777 89999999754
No 203
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.37 E-value=0.0056 Score=51.61 Aligned_cols=38 Identities=34% Similarity=0.343 Sum_probs=32.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL 91 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 91 (340)
|+|. +..|+||||+|..|+..+...|.++.+|.+|-..
T Consensus 2 i~i~-G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIA-GPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 5555 7889999999999999999999999999998643
No 204
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.37 E-value=0.031 Score=49.35 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=34.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++.|. +..|+|||++|.++++..+++|.+|+++.++..
T Consensus 20 ~gs~~lI~-G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 20 ERNVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 34555555 889999999999999988888999999999875
No 205
>PRK05595 replicative DNA helicase; Provisional
Probab=96.36 E-value=0.0043 Score=60.08 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~ 90 (340)
.-+.+.++..|+|||+++.|+|..+| +.|++|+++.+...
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 45667789999999999999999877 56999999999876
No 206
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.34 E-value=0.0061 Score=54.28 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLR 92 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 92 (340)
+|+|+ +..|+||||++..++..|.+.|.++.+|+.|.-+.
T Consensus 1 IIgIt-G~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVT-GSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 46776 67789999999999999999999999999997644
No 207
>PRK04328 hypothetical protein; Provisional
Probab=96.33 E-value=0.032 Score=49.62 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=35.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.++.|. +..|+|||+++.++++..+++|.+++++.++..
T Consensus 21 p~gs~ili~-G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 345566666 677799999999999998888999999999875
No 208
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.27 E-value=0.0069 Score=49.34 Aligned_cols=36 Identities=33% Similarity=0.439 Sum_probs=32.4
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+..++.|+||||++..++..++..|.+|++++++..
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 345789999999999999999999999999999876
No 209
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.24 E-value=0.016 Score=48.66 Aligned_cols=36 Identities=33% Similarity=0.358 Sum_probs=28.9
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++-=|+||||+-.+|.. ....|.++++|-.|..
T Consensus 3 ~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g 38 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFG 38 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTT
T ss_pred EEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccc
Confidence 44556779999999999998 6667999999988865
No 210
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.24 E-value=0.05 Score=51.88 Aligned_cols=66 Identities=20% Similarity=0.299 Sum_probs=47.9
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.++|+|+.... .+...+..+|.+++++..+..-.....+.+..+...+.+.+.+++|+.+..
T Consensus 74 ~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (394)
T ss_pred CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC
Confidence 367889999986432 223345668999999988765455666777778777777777889999863
No 211
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.19 E-value=0.0067 Score=51.48 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=29.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH----------CCCcEEEEecCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLAR----------LGFSVVAIDADVG 90 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~----------~g~~VlliD~D~~ 90 (340)
++++.+.+|+||||++.++|..++. .+.+|++|+++..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 5666688999999999999999997 5789999999976
No 212
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.18 E-value=0.014 Score=51.20 Aligned_cols=42 Identities=26% Similarity=0.253 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~ 90 (340)
+.+.++.+. +..|+|||+++.+++...... +.+|++||++..
T Consensus 17 ~~g~i~~i~-G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 17 ETGSITEIF-GEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC
Confidence 344555555 788999999999999775543 379999999864
No 213
>PRK12735 elongation factor Tu; Reviewed
Probab=96.17 E-value=0.066 Score=51.08 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=47.5
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
+..++++|||+... ..+...+..+|.+++++.....-.....+.+..+...+.+.+.+++|+.+..
T Consensus 74 ~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc
Confidence 35679999999532 2234456678999999988764455566777777777777777789999864
No 214
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=96.14 E-value=0.015 Score=53.31 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=39.0
Q ss_pred CCCEEEEEEcCC-CCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGK-GGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~k-GGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
....+|+|.|-. ||+|||-++.-||..|.++|++|.++-=.+.
T Consensus 26 ~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 69 (311)
T TIGR00682 26 APVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYG 69 (311)
T ss_pred CCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 456899999988 9999999999999999999999999977665
No 215
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.10 E-value=0.045 Score=46.34 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=30.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.|.|. +..|.||||.|..+|...+..|.+|+++-+=
T Consensus 24 ~v~v~-~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 24 LLIVH-TGNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred eEEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 33344 5668899999999999999999999998764
No 216
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.09 E-value=0.28 Score=42.25 Aligned_cols=42 Identities=24% Similarity=0.183 Sum_probs=33.0
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+..++|+|+ +--|+||||+..+++..+. .+.+|.++..|..
T Consensus 19 ~~~~~~i~~~-G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~ 60 (207)
T TIGR00073 19 KHGLVVLNFM-SSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVI 60 (207)
T ss_pred hcCcEEEEEE-CCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCC
Confidence 4456778777 5678999999999998765 3579999997764
No 217
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.08 E-value=0.045 Score=48.96 Aligned_cols=46 Identities=30% Similarity=0.317 Sum_probs=39.0
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL 94 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l 94 (340)
+.+.+++|. +..|+|||+++.+++...++.|.+|++|.++.....+
T Consensus 21 p~g~~~lI~-G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 21 PRGSVVLIT-GPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred cCCcEEEEE-cCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 455667766 8889999999999999999999999999999873343
No 218
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.05 E-value=0.0089 Score=48.75 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=31.3
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+..+..|+||||+|..|+..+.+.|.++.++|.|..
T Consensus 3 ~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 344889999999999999999998999999887754
No 219
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.92 E-value=0.069 Score=49.06 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=38.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD 95 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~ 95 (340)
..++.+.+.| --.+||||++.-|-.+..+.|++.+.+|+|++.++..
T Consensus 101 ~~GPrv~vVG-p~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sit 147 (415)
T KOG2749|consen 101 SYGPRVMVVG-PTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSIT 147 (415)
T ss_pred ccCCEEEEEC-CCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCcee
Confidence 3456666663 3468999999999999999999999999999866543
No 220
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=95.91 E-value=0.045 Score=48.32 Aligned_cols=89 Identities=19% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
++.+.++|||+... ......+..+|.+++|+.....-......+.+.+...+.+ ..+++|+.+..... ......+
T Consensus 63 ~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~--~~~~~~~ 139 (237)
T cd04168 63 DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP-TIIFVNKIDRAGAD--LEKVYQE 139 (237)
T ss_pred CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccccCCC--HHHHHHH
Confidence 57899999998653 3446678889999999987655445566677777766665 45899999865321 2234678
Q ss_pred HHHHhCCcee-EEec
Q 047623 244 IQEMLGLALL-GVIP 257 (340)
Q Consensus 244 i~~~~g~~v~-~~Ip 257 (340)
+++.++.+++ ..+|
T Consensus 140 i~~~~~~~~~~~~~p 154 (237)
T cd04168 140 IKEKLSSDIVPMQKV 154 (237)
T ss_pred HHHHHCCCeEEEECC
Confidence 8888987766 4466
No 221
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.026 Score=51.26 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=84.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHH----CCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLAR----LGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~----~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
++|.+. +-.|+|||+++-.||+.|+= +-.+..+|+.+.+ .-.+.||+-.. .-+..++..-..+-+ +
T Consensus 178 RliLlh-GPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh-sLFSKWFsESg---KlV~kmF~kI~ELv~----d- 247 (423)
T KOG0744|consen 178 RLILLH-GPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH-SLFSKWFSESG---KLVAKMFQKIQELVE----D- 247 (423)
T ss_pred eEEEEe-CCCCCChhHHHHHHHHhheeeecCccccceEEEEehh-HHHHHHHhhhh---hHHHHHHHHHHHHHh----C-
Confidence 556666 67899999999999999983 3567889999887 67788886543 222222221111100 0
Q ss_pred ccCceeEeecC--------CCCCCCCCCcchhh---HHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEE
Q 047623 127 RWSNFELLCIS--------KPRSKLPLGFGGKA---LTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLV 195 (340)
Q Consensus 127 ~~~~l~~l~~~--------~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv 195 (340)
..++-++..+ ..... ......+. +..++.++.+ ++....++|.-|++-.+....+....||.+..|
T Consensus 248 -~~~lVfvLIDEVESLa~aR~s~~-S~~EpsDaIRvVNalLTQlDr-lK~~~NvliL~TSNl~~siD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 248 -RGNLVFVLIDEVESLAAARTSAS-SRNEPSDAIRVVNALLTQLDR-LKRYPNVLILATSNLTDSIDVAFVDRADIVFYV 324 (423)
T ss_pred -CCcEEEEEeHHHHHHHHHHHhhh-cCCCCchHHHHHHHHHHHHHH-hccCCCEEEEeccchHHHHHHHhhhHhhheeec
Confidence 0222222111 10000 00011122 2233333333 344556666666665566667778899999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhc
Q 047623 196 TTPDITSLRDAD-RVTGLLECD 216 (340)
Q Consensus 196 ~~~~~~s~~~~~-~~~~~l~~~ 216 (340)
-.|+...+.... ..++.+-..
T Consensus 325 G~Pt~~ai~~IlkscieEL~~~ 346 (423)
T KOG0744|consen 325 GPPTAEAIYEILKSCIEELISS 346 (423)
T ss_pred CCccHHHHHHHHHHHHHHHHhc
Confidence 988777765543 344444443
No 222
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=95.90 E-value=0.069 Score=42.64 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=43.6
Q ss_pred CCCEEEEcCCCCCC---------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 166 SPDFILIDCPAGID---------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 166 ~~D~VIiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
.++++++|+|+... ......+..+|.+++++....................+ ..+.+++|+.+...
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~-~~~ivv~nK~D~~~ 118 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERG-KPVLLVLNKIDLLP 118 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcC-CeEEEEEEccccCC
Confidence 48999999998432 23344667899999999887665444444333333333 34679999988643
No 223
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.89 E-value=0.014 Score=52.29 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+....+..|+|||+++.++|...+++|.+|++++++..
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 3445555899999999999999999999999999999843
No 224
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=95.87 E-value=0.015 Score=49.30 Aligned_cols=65 Identities=25% Similarity=0.302 Sum_probs=53.1
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.+||||+... ..+..++..+|.+++++++...-.....+.++.+...+.+ +.+++|+++.-
T Consensus 69 ~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~ 135 (188)
T PF00009_consen 69 NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI 135 (188)
T ss_dssp SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS
T ss_pred ccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch
Confidence 68899999999653 2345567889999999999877667788888999888888 88999999875
No 225
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.87 E-value=0.013 Score=52.70 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 90 (340)
-+.+.++..|+|||+++.++|..++.. |.+|+++.++..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 355666999999999999999999877 999999999865
No 226
>PRK10218 GTP-binding protein; Provisional
Probab=95.86 E-value=0.15 Score=51.31 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=49.1
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.+.|+|||+.. .......+..+|.+++|++....-..........+...+.+. .+++|+.+..
T Consensus 67 ~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~-IVviNKiD~~ 133 (607)
T PRK10218 67 DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP-IVVINKVDRP 133 (607)
T ss_pred CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCE-EEEEECcCCC
Confidence 5888999999864 334566788999999999887655556666666666666664 6899999864
No 227
>PRK06762 hypothetical protein; Provisional
Probab=95.85 E-value=0.014 Score=48.29 Aligned_cols=37 Identities=30% Similarity=0.517 Sum_probs=28.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
|+++|.++ +..|+||||+|..|+..+ |..+.+++.|.
T Consensus 1 m~~li~i~-G~~GsGKST~A~~L~~~l---~~~~~~i~~D~ 37 (166)
T PRK06762 1 MTTLIIIR-GNSGSGKTTIAKQLQERL---GRGTLLVSQDV 37 (166)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCCeEEecHHH
Confidence 44566665 889999999999999887 44677777653
No 228
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=95.83 E-value=0.021 Score=52.69 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=37.0
Q ss_pred CCEEEEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSG-KGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~-kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
...+|+|.|- -||+|||+++..||..|.++|++|.+|-=+..
T Consensus 48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg 90 (325)
T PRK00652 48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYG 90 (325)
T ss_pred CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 4569999776 59999999999999999999999999977765
No 229
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.82 E-value=0.053 Score=53.51 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=35.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 90 (340)
+.+.++.+. +..|+|||+++.+++...+++ |.+|++|.++..
T Consensus 29 p~Gs~~li~-G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 29 PKGRPTLVS-GTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES 71 (509)
T ss_pred CCCcEEEEE-eCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 345566666 788999999999999888877 999999999976
No 230
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.82 E-value=0.024 Score=48.94 Aligned_cols=40 Identities=30% Similarity=0.361 Sum_probs=32.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
....+|++. +..|+||||++..|+..+ .+..+.+++.|..
T Consensus 4 ~~~~iI~I~-G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~ 43 (209)
T PRK05480 4 KKPIIIGIA-GGSGSGKTTVASTIYEEL--GDESIAVIPQDSY 43 (209)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHh--CCCceEEEeCCcc
Confidence 345677777 688999999999999988 4568889999864
No 231
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.78 E-value=0.012 Score=52.39 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=31.0
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+..|-.|+||||+|..||..+...|.+|.++|.|.
T Consensus 3 vl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 3 ILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 45588999999999999999999999999998774
No 232
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.78 E-value=0.016 Score=51.78 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=34.5
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 90 (340)
.-+.+.++..|+|||+++.++|..++.. |.+|+++.++..
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~ 59 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMS 59 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCC
Confidence 3467777999999999999999999987 699999999976
No 233
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.78 E-value=0.017 Score=50.96 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 90 (340)
-+.+.++..|+|||+++.+++..++.. |.+|+++.++..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 455556889999999999999999987 999999999976
No 234
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.71 E-value=0.23 Score=41.32 Aligned_cols=66 Identities=12% Similarity=-0.016 Sum_probs=41.3
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhc-C--CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTP-DITSLRDADRVTGLLECD-G--IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~-~--~~~~~vviN~~~~~ 231 (340)
.|++.++|+|+.... .....+..+|.++++... +..+...+..+.+.+.+. . ...+.++.|+.+..
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 478899999885422 223445668877777654 445666666655555432 1 13577999998854
No 235
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.70 E-value=0.013 Score=54.38 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=33.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCCC
Q 047623 54 VITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVGL 91 (340)
Q Consensus 54 ~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~ 91 (340)
+|..+-.|+||||++..|+.+|. +.|++|.++|.|-.-
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 56668889999999999999998 579999999999754
No 236
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.70 E-value=0.59 Score=40.04 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.|+++ +..|+||||+...+...+... .++.++..|..
T Consensus 3 ~i~i~-G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~ 39 (199)
T TIGR00101 3 KIGVA-GPVGSGKTALIEALTRALRQK-YQLAVITNDIY 39 (199)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcC
Confidence 45666 778899999999999887754 46888877765
No 237
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.69 E-value=0.027 Score=47.56 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=34.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.++.+|.+. +..|+||||++..|+..+...|..+.++|.|.-
T Consensus 16 ~~~~~i~i~-G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 16 HRGVVIWLT-GLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 455666666 667999999999999999888888899987753
No 238
>PRK05433 GTP-binding protein LepA; Provisional
Probab=95.67 E-value=0.1 Score=52.44 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=43.2
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.|.+.++|||+..+. .....+..||.++++++.....-.........+...+.+ +.+|+|+.+..
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~ 139 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLP 139 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCC
Confidence 478899999996543 345678889999999988643222222233333334544 77999999864
No 239
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=95.65 E-value=0.071 Score=51.32 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=42.5
Q ss_pred CCEEEEcCCCCCC----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
..+.|+|||+... .....++..||.++++++....-......+.+.+++.+ ..+.+|+|+++..
T Consensus 47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~-~piilVvNK~D~~ 120 (429)
T TIGR03594 47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSG-KPVILVANKIDGK 120 (429)
T ss_pred eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCEEEEEECccCC
Confidence 4578999988421 12344567899999999886533333345666666544 3577899999864
No 240
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.27 Score=44.69 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=103.6
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
...+++++.|+.--+||=|+|..|...+...|+++..+-.+.. +-+- .+
T Consensus 146 ~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqt-gil~--~~---------------------------- 194 (339)
T COG3367 146 VDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQT-GILI--AD---------------------------- 194 (339)
T ss_pred cCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCce-eeEE--ec----------------------------
Confidence 3468999999999999999999999999999999988877654 1111 00
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH----HHHHH--hcCCeEEEEeCCChh
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG----FITAI--TPANEAVLVTTPDIT 201 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~----~~~~l--~~ad~viiv~~~~~~ 201 (340)
.++- +. ....++-...+..+.-.+.+ +++|+|+|...+++..+ ....+ .+.|.++++-.|+..
T Consensus 195 -~gvv-vd------av~~DfaAGave~~v~~~~e---~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~ 263 (339)
T COG3367 195 -DGVV-VD------AVVMDFAAGAVESAVYEAEE---KNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRK 263 (339)
T ss_pred -CceE-ec------chhHHHHHHHHHHHHHHhhh---cCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCc
Confidence 0000 00 00001112222222222222 37999999999877433 24444 468999999998766
Q ss_pred hHHH-------HHHHHHHHHhc-CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHH
Q 047623 202 SLRD-------ADRVTGLLECD-GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEV 262 (340)
Q Consensus 202 s~~~-------~~~~~~~l~~~-~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~ 262 (340)
...+ ...+++.+... +.+.+++.+|--+-++. ..-.-..++...+|+|+...+.+..++
T Consensus 264 ~~~g~P~~ip~leevi~l~e~l~~a~Vvgi~lNtr~~dE~--~are~~a~l~~efglP~~Dp~~~~~d~ 330 (339)
T COG3367 264 YRDGFPEPIPPLEEVIALYELLSNAKVVGIALNTRNLDEE--EARELCAKLEAEFGLPVTDPLRFGEDV 330 (339)
T ss_pred cccCCCCcCCCHHHHHHHHHHccCCcEEEEEecccccChH--HHHHHHHHHhhccCCccccccccchHH
Confidence 5542 23333333322 36778888886443331 111224467777888888777766554
No 241
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.64 E-value=0.015 Score=45.21 Aligned_cols=28 Identities=39% Similarity=0.725 Sum_probs=21.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEE
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVA 84 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll 84 (340)
|.| .+..|+||||+|..||..+ |..++-
T Consensus 2 I~I-~G~~gsGKST~a~~La~~~---~~~~i~ 29 (121)
T PF13207_consen 2 III-SGPPGSGKSTLAKELAERL---GFPVIS 29 (121)
T ss_dssp EEE-EESTTSSHHHHHHHHHHHH---TCEEEE
T ss_pred EEE-ECCCCCCHHHHHHHHHHHH---CCeEEE
Confidence 444 4788999999999999877 656543
No 242
>PF13245 AAA_19: Part of AAA domain
Probab=95.59 E-value=0.027 Score=40.21 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=28.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC----CCcEEEEecC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARL----GFSVVAIDAD 88 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~----g~~VlliD~D 88 (340)
+++..+-.|+|||+++++++..+... +.+|+++-..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 45555888999999999999888865 8899998544
No 243
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.58 E-value=0.071 Score=52.64 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=35.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++.|. +..|+|||+++.+++...++.|.+|+++.++..
T Consensus 272 ~g~~~li~-G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~ 312 (509)
T PRK09302 272 RGSIILVS-GATGTGKTLLASKFAEAACRRGERCLLFAFEES 312 (509)
T ss_pred CCcEEEEE-cCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 34566665 688999999999999999999999999999865
No 244
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.55 E-value=0.019 Score=49.03 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=30.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCc----EEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFS----VVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~----VlliD~D~~ 90 (340)
+|+|. +-+|+||||+|..|+..|.+.|.+ +..+..|..
T Consensus 1 IIgI~-G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~ 42 (194)
T PF00485_consen 1 IIGIA-GPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF 42 (194)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence 46666 677899999999999999998877 667766643
No 245
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=95.51 E-value=0.037 Score=44.60 Aligned_cols=55 Identities=27% Similarity=0.328 Sum_probs=43.9
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLEN 102 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~ 102 (340)
.+.+-+|=++ +-.|+||||+|..|..+|-++|+-+-.+|.|.-.-++..-++.+.
T Consensus 28 ~qkGcviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a 82 (207)
T KOG0635|consen 28 KQKGCVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKA 82 (207)
T ss_pred cCCCcEEEEe-ccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcch
Confidence 4555677777 556889999999999999999999999999986566666555543
No 246
>PRK05439 pantothenate kinase; Provisional
Probab=95.50 E-value=0.034 Score=50.92 Aligned_cols=43 Identities=28% Similarity=0.268 Sum_probs=35.4
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCcEEEEecCCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARL--GFSVVAIDADVG 90 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~ 90 (340)
.+...+|+|+ +..|+||||+|..|+..+.+. |.+|.+|.+|-.
T Consensus 83 ~~~~~iIgIa-G~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 83 QKVPFIIGIA-GSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 3455677777 778999999999999999864 789999999964
No 247
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.50 E-value=0.072 Score=52.05 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=41.7
Q ss_pred CCEEEEcCCCCCC----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
..+.++|+|+... .....++..||.+++|++.+......-..+.+.++..+ ..+.+|+|+++..
T Consensus 86 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~-~piilV~NK~Dl~ 159 (472)
T PRK03003 86 RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSG-KPVILAANKVDDE 159 (472)
T ss_pred cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcC-CCEEEEEECccCC
Confidence 5678899988431 11234567899999999986532222344556665433 4577999999864
No 248
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=95.49 E-value=0.065 Score=53.98 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=48.8
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.-+.+||+|+... ..+...+..+|.+++|+..+..-.....+.++.+...+.+.+.+|+|+++..
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 4467999998532 2234456789999999998876666777777777777777778999999863
No 249
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.47 E-value=0.021 Score=48.05 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.++-+.+.| ..|+|||.+|..+|..+.++|++|+.+++.
T Consensus 46 ~~~~l~l~G-~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 46 NGENLILYG-PPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp C--EEEEEE-STTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred cCeEEEEEh-hHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 345566665 579999999999999999999999998754
No 250
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.42 E-value=0.015 Score=45.57 Aligned_cols=39 Identities=33% Similarity=0.412 Sum_probs=32.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+.+. +..|+||||++..+|..+...+..+..++++..
T Consensus 3 ~~~~l~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIV-GPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 456666 558999999999999999987778888888865
No 251
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.41 E-value=0.053 Score=50.05 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=31.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~ 90 (340)
+.++-|+ +..|+|||+++.++|...+.. +.+|++||++..
T Consensus 102 g~vtei~-G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 102 QSITEFY-GEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred CcEEEEE-CCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCC
Confidence 4455555 789999999999999887642 359999999864
No 252
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.40 E-value=0.036 Score=46.39 Aligned_cols=40 Identities=33% Similarity=0.309 Sum_probs=32.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+.+.+|.+. +-.|+||||++..|+..+...+..+.++|.|
T Consensus 5 ~~~~~I~i~-G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d 44 (176)
T PRK05541 5 PNGYVIWIT-GLAGSGKTTIAKALYERLKLKYSNVIYLDGD 44 (176)
T ss_pred CCCCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEecH
Confidence 344566666 6778899999999999999888888888755
No 253
>PRK09165 replicative DNA helicase; Provisional
Probab=95.36 E-value=0.023 Score=55.80 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=35.4
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHC---------------CCcEEEEecCCCCCCc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARL---------------GFSVVAIDADVGLRNL 94 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~---------------g~~VlliD~D~~~~~l 94 (340)
.-+.+.++..|+|||++|.|+|...++. |.+|+++.+......+
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 3466777999999999999999998853 7889999888763333
No 254
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.35 E-value=0.099 Score=47.33 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=34.9
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
......+|.++ +..|+||||+...+...+... .++.+|+.|..
T Consensus 100 ~~~~~~~v~l~-G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~ 142 (290)
T PRK10463 100 AARKQLVLNLV-SSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQ 142 (290)
T ss_pred HhcCCeEEEEE-CCCCCCHHHHHHHHHHHhccC-CCEEEECCCcC
Confidence 45667788888 568999999999999988755 58999988865
No 255
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.33 E-value=0.073 Score=46.49 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=49.2
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.+.|+|||+.. .......+..+|.+++|+.....-.......++.+...+. .+.+++|+++..
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~-p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERV-KPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCC-CEEEEEECCCcc
Confidence 5888999999965 3455677889999999998876555556666666665555 477999999864
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.33 E-value=0.026 Score=50.39 Aligned_cols=38 Identities=37% Similarity=0.510 Sum_probs=32.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
..+-+.+. ++.|+|||.+|+.+|..+.++|.+|+++..
T Consensus 104 ~~~nl~l~-G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 104 RGENLVLL-GPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred cCCcEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 34456665 889999999999999999988999999854
No 257
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.31 E-value=0.041 Score=47.97 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=35.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++.+. +..|+|||+++.+++...+++|.+|++++++..
T Consensus 15 ~g~~~li~-G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 15 EGHVIVVI-GEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER 55 (224)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 45667776 569999999999999998888999999999875
No 258
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.30 E-value=0.084 Score=48.59 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=30.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~ 90 (340)
.|+-..+..|+|||+++.++|...+. .|.+|++||+...
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 44545589999999999999976542 3569999999854
No 259
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.042 Score=44.90 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=32.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
+++..|.|+ +..|+||||++.-+|-.|.+.|++|.=+=+
T Consensus 3 ~~~mki~IT-G~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 3 KMAMKIFIT-GRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred CcceEEEEe-CCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 456677787 789999999999999999999999975533
No 260
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.23 E-value=0.041 Score=38.39 Aligned_cols=32 Identities=41% Similarity=0.577 Sum_probs=26.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
|++. +..|+||||++..|+..| .+.++.++|.
T Consensus 2 i~i~-G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAIT-GGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 4454 777899999999999999 6778888765
No 261
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.22 E-value=0.032 Score=53.72 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~ 90 (340)
.-+.+.++..|+|||+++.++|..++ +.|++|+++.++..
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~ 234 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS 234 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 34667779999999999999999988 67999999999875
No 262
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.21 E-value=0.094 Score=44.26 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=34.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL 91 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 91 (340)
+..|.|. +.-|+|||++...+-..|.++ +++.+|..|...
T Consensus 13 ~~~i~v~-Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t 52 (202)
T COG0378 13 MLRIGVG-GPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT 52 (202)
T ss_pred eEEEEec-CCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeec
Confidence 4667776 677899999999999999887 999999999873
No 263
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.14 Score=45.87 Aligned_cols=119 Identities=16% Similarity=0.092 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCHHHHHH---HhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCccccc---cccc
Q 047623 167 PDFILIDCPAGIDAGFITA---ITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGE---DMMS 240 (340)
Q Consensus 167 ~D~VIiD~~~~~~~~~~~~---l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~---~~~~ 240 (340)
-.|--+|||+.-+. ..+. ..+.|..|+|+..+...+-++++.+=..++.+.+.+.+++|+++--..... ....
T Consensus 75 rhyahVDcPGHaDY-vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemE 153 (394)
T COG0050 75 RHYAHVDCPGHADY-VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEME 153 (394)
T ss_pred ceEEeccCCChHHH-HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHH
Confidence 34556699987543 3333 356899999998888888888888877888999999999999886431110 1122
Q ss_pred HHHHHHHhCCce-eEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHHHHHHHHhcc
Q 047623 241 VLDIQEMLGLAL-LGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQD 296 (340)
Q Consensus 241 ~~~i~~~~g~~v-~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~la~~i~~~~ 296 (340)
..++.+.||.+- ...|+....+.... | ..+....+.+|.+.+-+..
T Consensus 154 vreLLs~y~f~gd~~Pii~gSal~ale--~--------~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 154 VRELLSEYGFPGDDTPIIRGSALKALE--G--------DAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred HHHHHHHcCCCCCCcceeechhhhhhc--C--------CcchHHHHHHHHHHHHhcC
Confidence 345666677662 23455544442211 1 1225556667766665554
No 264
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=95.11 E-value=0.1 Score=45.03 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=45.8
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
+..+.|+|||+... ......+..+|.+++|+.....-.....+....+...+.+.+.+|+|+.+..
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 46789999998542 2334556789999999988655444444555555555555677789999864
No 265
>PRK07261 topology modulation protein; Provisional
Probab=95.11 E-value=0.28 Score=40.91 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=23.1
Q ss_pred EEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623 170 ILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA 206 (340)
Q Consensus 170 VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~ 206 (340)
.|+|+.... ......+..||.++..--|...++..+
T Consensus 61 wIidg~~~~-~~~~~~l~~ad~vI~Ld~p~~~~~~R~ 96 (171)
T PRK07261 61 WIIDGNYSW-CLYEERMQEADQIIFLNFSRFNCLYRA 96 (171)
T ss_pred EEEcCcchh-hhHHHHHHHCCEEEEEcCCHHHHHHHH
Confidence 777886532 222455678998888877766665544
No 266
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=95.10 E-value=0.06 Score=53.95 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+... ..+...+..+|.+++|+..+..-.....+.+..+...+.+.+.+++|+++..
T Consensus 50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 6778999998532 2234445679999999998765445555666667777777788999999864
No 267
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=95.09 E-value=0.054 Score=54.36 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=36.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
++++|.|+| ..|+||||+...|...|.++|+||..|..+-+
T Consensus 9 ~~~vi~ivG-~s~sGKTTlie~li~~L~~~G~rVavIKh~~h 49 (597)
T PRK14491 9 SIPLLGFCA-YSGTGKTTLLEQLIPELNQRGLRLAVIKHAHH 49 (597)
T ss_pred CccEEEEEc-CCCCCHHHHHHHHHHHHHhCCceEEEEEcCCc
Confidence 478999996 57899999999999999999999999998654
No 268
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.07 E-value=0.17 Score=52.05 Aligned_cols=41 Identities=29% Similarity=0.274 Sum_probs=34.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++-+. +..|+||||++.+++...++.|.+|++||+...
T Consensus 59 ~GsiteI~-G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t 99 (790)
T PRK09519 59 RGRVIEIY-GPESSGKTTVALHAVANAQAAGGVAAFIDAEHA 99 (790)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc
Confidence 34555555 789999999999999988889999999999865
No 269
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.07 E-value=0.037 Score=48.26 Aligned_cols=39 Identities=33% Similarity=0.284 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHH--CCCcEEEEecCCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLAR--LGFSVVAIDADVGL 91 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~--~g~~VlliD~D~~~ 91 (340)
+|++. +..|+||||+|..|+..+.. .+.+|.+|.+|...
T Consensus 1 IigI~-G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIA-GSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 35666 77899999999999999986 56789999888653
No 270
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.05 E-value=0.049 Score=45.41 Aligned_cols=37 Identities=30% Similarity=0.247 Sum_probs=30.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+.+..++ ..|.||||.|..+|..++.+|++|+++-+-
T Consensus 6 Gli~v~~--g~GkGKtt~a~g~a~ra~~~g~~v~ivQFl 42 (173)
T TIGR00708 6 GIIIVHT--GNGKGKTTAAFGMALRALGHGKKVGVIQFI 42 (173)
T ss_pred cEEEEEC--CCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 4444444 389999999999999999999999988654
No 271
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.01 E-value=0.061 Score=50.73 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=37.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.++++|.|+| ..|+||||+...|...|.++|++|.+|.-|.+
T Consensus 203 ~~~~~~~~~g-~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 203 GAPPLLGVVG-YSGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred CCccEEEEec-CCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 3578999995 67899999999999999999999999997755
No 272
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=95.00 E-value=0.39 Score=46.12 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=43.4
Q ss_pred CCCEEEEcCCCCCC---------HHHHHHHhcCCeEEEEeCCCh----hhHHHHHHHHHHHHhcC----CCceEEEEecc
Q 047623 166 SPDFILIDCPAGID---------AGFITAITPANEAVLVTTPDI----TSLRDADRVTGLLECDG----IRDIKMVVNRV 228 (340)
Q Consensus 166 ~~D~VIiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~----~s~~~~~~~~~~l~~~~----~~~~~vviN~~ 228 (340)
.+.++++|+|+-.. ......+..||.++.+++.+. ..+.....+.+.+..+. .....+|+|++
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 36799999998421 122333456999999998843 45566666666666532 24677999999
Q ss_pred cC
Q 047623 229 RT 230 (340)
Q Consensus 229 ~~ 230 (340)
+-
T Consensus 285 DL 286 (424)
T PRK12297 285 DL 286 (424)
T ss_pred CC
Confidence 84
No 273
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.97 E-value=0.027 Score=47.93 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=31.0
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+..+=.|+||||+|-+||..|.+.+.+|..+..|..
T Consensus 5 IlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~ 40 (261)
T COG4088 5 ILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL 40 (261)
T ss_pred EEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh
Confidence 344788999999999999999999999988777654
No 274
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.95 E-value=0.12 Score=48.25 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHH---C---CCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLAR---L---GFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~---~---g~~VlliD~D~~ 90 (340)
..|+-..+..|+|||+++.++|...+. . +.+|++||..-.
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t 171 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT 171 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC
Confidence 456656689999999999999976652 1 369999999854
No 275
>PHA00729 NTP-binding motif containing protein
Probab=94.90 E-value=0.038 Score=48.09 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLA 76 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la 76 (340)
..|.++ +..|+||||+|..||..+.
T Consensus 18 ~nIlIt-G~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIF-GKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHH
Confidence 356666 5789999999999999875
No 276
>PRK06526 transposase; Provisional
Probab=94.86 E-value=0.021 Score=50.93 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
.-+.++ +..|+|||++|..++..+.++|++|+++.
T Consensus 99 ~nlll~-Gp~GtGKThLa~al~~~a~~~g~~v~f~t 133 (254)
T PRK06526 99 ENVVFL-GPPGTGKTHLAIGLGIRACQAGHRVLFAT 133 (254)
T ss_pred ceEEEE-eCCCCchHHHHHHHHHHHHHCCCchhhhh
Confidence 345555 67899999999999999999999987743
No 277
>PRK08506 replicative DNA helicase; Provisional
Probab=94.80 E-value=0.049 Score=53.15 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=37.5
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL 94 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l 94 (340)
.-+.|.++..|+|||+++.|+|..+++.|.+|+++.+......+
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 44677789999999999999999999889999999998763333
No 278
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.80 E-value=0.56 Score=43.32 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=26.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+|.++==|+||||+-.+|..... |+|+++|=-+..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfG 38 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFG 38 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCc
Confidence 44445568999999988877655 899999866653
No 279
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=94.75 E-value=0.5 Score=43.94 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=83.5
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHH--HHHHHHHCCC----cEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCcccc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTAN--VGLSLARLGF----SVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQ 120 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~--LA~~la~~g~----~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~ 120 (340)
...-+++..-+++||-|.+.+..+ -|-..++.|. +.+.+++-.- .++ .+.|..+.-..+|...+.+......
T Consensus 109 ~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~-adV-glVG~PNaGKSTLln~ls~a~~~va 186 (335)
T PRK12299 109 EHGQRFLVAKGGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLL-ADV-GLVGLPNAGKSTLISAVSAAKPKIA 186 (335)
T ss_pred CCCcEEEEecCCCCcCCchhhccccCCCCccccCCCCCcEEEEEEEEccc-CCE-EEEcCCCCCHHHHHHHHHcCCCccC
Confidence 345578888899999998776532 2333444432 3444444332 221 2344444434455555544321100
Q ss_pred ceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC---------HHHHHHHhcCCe
Q 047623 121 ALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID---------AGFITAITPANE 191 (340)
Q Consensus 121 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~---------~~~~~~l~~ad~ 191 (340)
.....+..+++..+- ..+...++|+|+|+-.. ..+...+..||.
T Consensus 187 ~ypfTT~~p~~G~v~---------------------------~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~v 239 (335)
T PRK12299 187 DYPFTTLHPNLGVVR---------------------------VDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRL 239 (335)
T ss_pred CCCCceeCceEEEEE---------------------------eCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCE
Confidence 000011112222110 00135689999998431 222334566999
Q ss_pred EEEEeCCChh-hHHHHHHHHHHHHhcC----CCceEEEEecccCC
Q 047623 192 AVLVTTPDIT-SLRDADRVTGLLECDG----IRDIKMVVNRVRTD 231 (340)
Q Consensus 192 viiv~~~~~~-s~~~~~~~~~~l~~~~----~~~~~vviN~~~~~ 231 (340)
+++|++.+.. +.+.+..+.+.+..+. ...+.+|+|+.+-.
T Consensus 240 lI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 240 LLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 9999987643 4666666777776532 24678999999853
No 280
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=94.68 E-value=1.1 Score=39.64 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=39.6
Q ss_pred CCEEEEcCCCCCC-------H--------HHHHHHhc-CCeEEEEeCCCh-hhHHHHHHHHHHHHhcCCCceEEEEeccc
Q 047623 167 PDFILIDCPAGID-------A--------GFITAITP-ANEAVLVTTPDI-TSLRDADRVTGLLECDGIRDIKMVVNRVR 229 (340)
Q Consensus 167 ~D~VIiD~~~~~~-------~--------~~~~~l~~-ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~vviN~~~ 229 (340)
.|+++||+|+-.. . .....+.. .+.++.++.... ..-....++.+.++.. ..+..+|+|+++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~-~~rti~ViTK~D 203 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ-GERTIGVITKLD 203 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc-CCcEEEEEECCC
Confidence 8999999999541 1 12334443 456666665432 1222345666666654 356778999998
Q ss_pred CCc
Q 047623 230 TDM 232 (340)
Q Consensus 230 ~~~ 232 (340)
.-.
T Consensus 204 ~~~ 206 (240)
T smart00053 204 LMD 206 (240)
T ss_pred CCC
Confidence 754
No 281
>PRK09183 transposase/IS protein; Provisional
Probab=94.65 E-value=0.06 Score=48.22 Aligned_cols=37 Identities=32% Similarity=0.465 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
+..+.++ +..|+|||+++..+|..+.+.|++|+++++
T Consensus 102 ~~~v~l~-Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 102 NENIVLL-GPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CCeEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 3455566 677999999999999998899999998863
No 282
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.56 E-value=0.056 Score=46.14 Aligned_cols=36 Identities=33% Similarity=0.350 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+|++. +..|+||||++..|+..+ .+.++.++.+|..
T Consensus 1 iigi~-G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~ 36 (198)
T cd02023 1 IIGIA-GGSGSGKTTVAEEIIEQL--GNPKVVIISQDSY 36 (198)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHh--CCCCeEEEEeccc
Confidence 35666 568999999999999988 5568889998854
No 283
>PRK06749 replicative DNA helicase; Provisional
Probab=94.53 E-value=0.055 Score=52.07 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=35.8
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.-+.|.++..|+|||+++.|+|...++.|++|+++.+...
T Consensus 186 G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs 225 (428)
T PRK06749 186 GDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMS 225 (428)
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCC
Confidence 3466777999999999999999999998999999998876
No 284
>PRK08760 replicative DNA helicase; Provisional
Probab=94.53 E-value=0.054 Score=52.90 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=35.2
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGL 91 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~ 91 (340)
.-+.|.++..|+|||+++.|+|...+. .|++|+++.++...
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 356677799999999999999999885 59999999998763
No 285
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.52 E-value=0.35 Score=40.42 Aligned_cols=39 Identities=18% Similarity=0.056 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
..+.+... +..|=||||.|..+|.-.+-+|+||+++-+=
T Consensus 20 ~~Gli~VY--tGdGKGKTTAAlGlalRAaG~G~rV~iiQFl 58 (178)
T PRK07414 20 IEGLVQVF--TSSQRNFFTSVMAQALRIAGQGTPVLIVQFL 58 (178)
T ss_pred CCCEEEEE--eCCCCCchHHHHHHHHHHhcCCCEEEEEEEe
Confidence 34444443 3457799999999999999999999999764
No 286
>PRK12377 putative replication protein; Provisional
Probab=94.52 E-value=0.062 Score=47.71 Aligned_cols=37 Identities=32% Similarity=0.461 Sum_probs=31.0
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.-+.++ +..|+|||.+|..+|..+.+.|++|.++...
T Consensus 102 ~~l~l~-G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFS-GKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 345555 6789999999999999999999999888664
No 287
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=94.50 E-value=0.53 Score=43.69 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=43.5
Q ss_pred CCEEEEcCCCCCC---------HHHHHHHhcCCeEEEEeCCCh----hhHHHHHHHHHHHHhcC----CCceEEEEeccc
Q 047623 167 PDFILIDCPAGID---------AGFITAITPANEAVLVTTPDI----TSLRDADRVTGLLECDG----IRDIKMVVNRVR 229 (340)
Q Consensus 167 ~D~VIiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~----~s~~~~~~~~~~l~~~~----~~~~~vviN~~~ 229 (340)
..++|+|+|+... ......+..||.+++|++.+. ..++.+..+.+.+.... ...+.+|+|+++
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 6789999998531 122333456999999998865 35566666666665432 246779999998
Q ss_pred CC
Q 047623 230 TD 231 (340)
Q Consensus 230 ~~ 231 (340)
..
T Consensus 285 L~ 286 (329)
T TIGR02729 285 LL 286 (329)
T ss_pred CC
Confidence 63
No 288
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.49 E-value=0.068 Score=46.47 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=33.7
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
....+.++ +..|+|||++|..++..+.+.|.+++.++++.-
T Consensus 37 ~~~~lll~-G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLW-GESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 34566666 677999999999999998888889999988643
No 289
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.45 E-value=0.88 Score=44.65 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=34.0
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 90 (340)
+.+.++.|. +..|+||||+|.+++..-+++ |.++++|.++..
T Consensus 19 p~g~~~Li~-G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 19 PIGRSTLVS-GTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES 61 (484)
T ss_pred CCCeEEEEE-cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 345566666 788999999999999876655 999999999855
No 290
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=94.44 E-value=0.11 Score=48.32 Aligned_cols=43 Identities=30% Similarity=0.363 Sum_probs=37.7
Q ss_pred CCCEEEEEEc-CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITS-GKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s-~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
-..++|+|.| +-||+|||-++..||..|.++|++|.++-=.+.
T Consensus 54 ~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 97 (338)
T PRK01906 54 LGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYG 97 (338)
T ss_pred CCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 3457898887 469999999999999999999999999987775
No 291
>PTZ00035 Rad51 protein; Provisional
Probab=94.43 E-value=0.18 Score=46.99 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=30.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~ 90 (340)
.+.++.++ +..|+|||+++..++..... .+.+|++||....
T Consensus 117 ~G~iteI~-G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~ 163 (337)
T PTZ00035 117 TGSITELF-GEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT 163 (337)
T ss_pred CCeEEEEE-CCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence 34555555 79999999999999876542 4569999998754
No 292
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.39 E-value=0.1 Score=43.61 Aligned_cols=43 Identities=33% Similarity=0.451 Sum_probs=28.8
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
...++.+.|. +..|+|||++...+...+.+.+.-++.++++..
T Consensus 21 ~~~~~~~ll~-G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 21 SGSPRNLLLT-GESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp S-----EEE--B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred cCCCcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 3444566665 788999999999999999987544888888876
No 293
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=94.35 E-value=0.41 Score=45.52 Aligned_cols=157 Identities=16% Similarity=0.185 Sum_probs=83.7
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHH--HHHHHHCCCc----EEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccc
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANV--GLSLARLGFS----VVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLD 119 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~L--A~~la~~g~~----VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~ 119 (340)
....-+++..-+++||-|.+.+..+. +-.+++.|.+ .+.+++..- .. -.+.|..+.-..+|...+.+....-
T Consensus 109 ~~~~~~~~~a~GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~i-ad-ValVG~PNaGKSTLln~Lt~~k~~v 186 (390)
T PRK12298 109 TEHGQRLLVAKGGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLL-AD-VGLLGLPNAGKSTFIRAVSAAKPKV 186 (390)
T ss_pred ccCCcEEEEecCCCCccchhhhccCccCCCcccCCCCCCceEEEEEeeecc-cc-EEEEcCCCCCHHHHHHHHhCCcccc
Confidence 34556788889999999998765433 2233444432 333333322 11 2334555544456666665432210
Q ss_pred cceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC---------HHHHHHHhcCC
Q 047623 120 QALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID---------AGFITAITPAN 190 (340)
Q Consensus 120 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~---------~~~~~~l~~ad 190 (340)
......+..+.+.++.. .+...++++|+|+-.. ..+...+..+|
T Consensus 187 s~~p~TT~~p~~Giv~~---------------------------~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 187 ADYPFTTLVPNLGVVRV---------------------------DDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cCCCCCccCcEEEEEEe---------------------------CCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 00001111122222100 0013489999999532 12334567899
Q ss_pred eEEEEeCCC----hhhHHHHHHHHHHHHhcC----CCceEEEEecccCC
Q 047623 191 EAVLVTTPD----ITSLRDADRVTGLLECDG----IRDIKMVVNRVRTD 231 (340)
Q Consensus 191 ~viiv~~~~----~~s~~~~~~~~~~l~~~~----~~~~~vviN~~~~~ 231 (340)
.++.+++.. .........+.+.+.... .....+|+|+.+..
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 999999765 234555566666665532 24577889999863
No 294
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.34 E-value=0.091 Score=41.45 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=33.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+.+.++ +..|+|||+++..++..+.+.+.++..+++...
T Consensus 18 ~~~~v~i~-G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 18 PPKNLLLY-GPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 33455565 788999999999999999888889999888654
No 295
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=94.31 E-value=1.4 Score=41.16 Aligned_cols=36 Identities=31% Similarity=0.368 Sum_probs=27.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
|.+.++==|+||||+--++... ..|.++++|-.|..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G 41 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFG 41 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCc
Confidence 3445567799999999998763 36889999987765
No 296
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.30 E-value=0.19 Score=43.79 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=32.2
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..+.++ +..|+|||++|..++..+.+.|.++..+++..
T Consensus 43 ~~~~l~-G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 43 RFFYLW-GEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 344444 88899999999999999988999999999865
No 297
>PRK06217 hypothetical protein; Validated
Probab=94.28 E-value=0.072 Score=44.92 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=24.4
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+.|.|+ +-.|+||||+|..||..+ |.+ .+|+|.
T Consensus 2 ~~I~i~-G~~GsGKSTla~~L~~~l---~~~--~~~~D~ 34 (183)
T PRK06217 2 MRIHIT-GASGSGTTTLGAALAERL---DIP--HLDTDD 34 (183)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence 346666 678899999999999766 444 577774
No 298
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.27 E-value=0.097 Score=44.41 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=30.8
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
+++|+|. +--|+||||++..|+..+...|++|..+..
T Consensus 3 g~~Ivie-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIE-GIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4667777 667889999999999999999999877644
No 299
>PLN02924 thymidylate kinase
Probab=94.26 E-value=0.11 Score=45.19 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=33.7
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
..++++.|+|- +-.|+||||.+..|+..|..+|++|.++..
T Consensus 12 ~~~~g~~IviE-GiDGsGKsTq~~~L~~~l~~~g~~v~~~~e 52 (220)
T PLN02924 12 VESRGALIVLE-GLDRSGKSTQCAKLVSFLKGLGVAAELWRF 52 (220)
T ss_pred cCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceeeeC
Confidence 34566778887 677899999999999999999999866543
No 300
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.22 E-value=0.91 Score=39.14 Aligned_cols=142 Identities=9% Similarity=-0.057 Sum_probs=79.8
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-CC--CceEEEEecccCCccccccccc
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-GI--RDIKMVVNRVRTDMIKGEDMMS 240 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-~~--~~~~vviN~~~~~~~~~~~~~~ 240 (340)
+.+.|+|+++.. .......+..+|.++++.+.+ ..++..+...++.+... .. ..+.+|.|+.+-..........
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~ 131 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREE 131 (211)
T ss_pred EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHH
Confidence 678899999854 233345567899988888874 56777777777766543 22 2456788998753211111111
Q ss_pred HHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCC--CHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623 241 VLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPP--TLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL 318 (340)
Q Consensus 241 ~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~--s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (340)
...+.+.+ +.++.+...+ ......+..|++.+.+..... +......-++.-.++..+
T Consensus 132 ~~~~~~~~--------------------~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 190 (211)
T cd04111 132 AEKLAKDL--------------------GMKYIETSARTGDNVEEAFELLTQEIYERIKRG-ELCALDGWDGVKSGFPAG 190 (211)
T ss_pred HHHHHHHh--------------------CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC-CCCccccccccccCCCcc
Confidence 22222222 2333343322 235677777777777665332 112233334445566677
Q ss_pred ceeeEEEecee
Q 047623 319 GVLAVTVGLEV 329 (340)
Q Consensus 319 ~~~~~~~~~~~ 329 (340)
++++.+-|.|.
T Consensus 191 ~~~~~~~~~~~ 201 (211)
T cd04111 191 RAFSLEERSPT 201 (211)
T ss_pred cccccCccccc
Confidence 77777777653
No 301
>PRK08006 replicative DNA helicase; Provisional
Probab=94.20 E-value=0.077 Score=51.70 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~ 90 (340)
.-+.|.++..|+|||++|.|+|..+|. .|++|+++.+...
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~ 264 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP 264 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 456677799999999999999999984 5999999998876
No 302
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=94.20 E-value=0.75 Score=42.48 Aligned_cols=36 Identities=28% Similarity=0.475 Sum_probs=27.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
|.+.++==|+||||+--++... ..|.++++|-.|..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG 41 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFG 41 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcC
Confidence 4444567789999999998753 46889999877764
No 303
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=94.17 E-value=0.36 Score=39.60 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=58.2
Q ss_pred CCCEEEEcCCCC--CC---H---HHHHHH--hcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccc
Q 047623 166 SPDFILIDCPAG--ID---A---GFITAI--TPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKG 235 (340)
Q Consensus 166 ~~D~VIiD~~~~--~~---~---~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~ 235 (340)
+..+.++|+|+- +. . .....+ ...|.++.|+++.. ++.-..+..++.+.+. .+.+++|+++......
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~-P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGI-PVVVVLNKMDEAERKG 122 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTS-SEEEEEETHHHHHHTT
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCC-CEEEEEeCHHHHHHcC
Confidence 478899999982 21 1 223333 46899999998865 4444566666666664 4779999998754322
Q ss_pred cccccHHHHHHHhCCceeEEecCChH
Q 047623 236 EDMMSVLDIQEMLGLALLGVIPEDSE 261 (340)
Q Consensus 236 ~~~~~~~~i~~~~g~~v~~~Ip~d~~ 261 (340)
.....+.+.+.+|.+++.+......
T Consensus 123 -~~id~~~Ls~~Lg~pvi~~sa~~~~ 147 (156)
T PF02421_consen 123 -IEIDAEKLSERLGVPVIPVSARTGE 147 (156)
T ss_dssp -EEE-HHHHHHHHTS-EEEEBTTTTB
T ss_pred -CEECHHHHHHHhCCCEEEEEeCCCc
Confidence 3345788999999998877665543
No 304
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=94.15 E-value=0.21 Score=45.99 Aligned_cols=97 Identities=22% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCHHHHHH---HhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCccccccc----
Q 047623 166 SPDFILIDCPAGIDAGFITA---ITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDM---- 238 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~~~~~~---l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~---- 238 (340)
+-++||.|||+... .+.++ ...||..|+.++....-+.+++|..-...-.|++.+.+.+|+.+--....+.+
T Consensus 85 KRkFIiADTPGHeQ-YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~ 163 (431)
T COG2895 85 KRKFIIADTPGHEQ-YTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIV 163 (431)
T ss_pred cceEEEecCCcHHH-HhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHH
Confidence 57899999999642 23333 45699999999999999999998877777789999999999987544332222
Q ss_pred ccHHHHHHHhCCceeEEecCChHHH
Q 047623 239 MSVLDIQEMLGLALLGVIPEDSEVI 263 (340)
Q Consensus 239 ~~~~~i~~~~g~~v~~~Ip~d~~~~ 263 (340)
.....+.+.+|.....+||-+.-..
T Consensus 164 ~dy~~fa~~L~~~~~~~IPiSAl~G 188 (431)
T COG2895 164 ADYLAFAAQLGLKDVRFIPISALLG 188 (431)
T ss_pred HHHHHHHHHcCCCcceEEechhccC
Confidence 2234667778888888999765544
No 305
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=94.13 E-value=0.95 Score=37.12 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=40.3
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
+.+-|+|+|+.. .......+..+|.++++... +..++.......+.+... ....+.++.|+.+..
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 567888998844 33444455678877766554 455676766666655431 123456788998753
No 306
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.13 E-value=0.53 Score=48.51 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=41.0
Q ss_pred CCCEEEEcCCCCCC----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.++|||+... .....++..||.+++|++....-...-..+.+.++..+ ..+.+|+|+++..
T Consensus 322 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~-~pvIlV~NK~D~~ 396 (712)
T PRK09518 322 GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAG-KPVVLAVNKIDDQ 396 (712)
T ss_pred CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcC-CCEEEEEECcccc
Confidence 35678899998432 11233567899999999875421122234555665543 4677899999863
No 307
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.11 E-value=0.083 Score=45.51 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.+|+|. +..|+||||++..|+..+.. ..+.++..|..
T Consensus 4 ~~g~vi~I~-G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIG-GGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEE-CCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 556677777 78899999999999988764 35666666653
No 308
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.10 E-value=0.087 Score=50.90 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=36.0
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGLRN 93 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~ 93 (340)
.-+.+.++..|+|||+++.++|..++. .|.+|+++.++.....
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~ 238 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQ 238 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHH
Confidence 346677799999999999999999886 5999999999976333
No 309
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=94.08 E-value=0.19 Score=41.06 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=44.6
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+++.++|+|+... ......+..+|.+++++..+..........++.+...+. .+.+|+|+.+..
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~-p~ivv~NK~Dl~ 115 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANV-PFIVALNKIDKP 115 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCC-CEEEEEEceecc
Confidence 58999999998643 223445678999999998875433444444555555444 478899999854
No 310
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=93.99 E-value=1.4 Score=36.20 Aligned_cols=66 Identities=9% Similarity=-0.041 Sum_probs=39.0
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+++.++|+++... ......+..+|.++++.+... .++......+..+... ....+.+++|+.+..
T Consensus 57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 36778899988532 233445677898888877643 3344444333333211 123567888998753
No 311
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=93.97 E-value=0.094 Score=45.82 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=32.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~ 90 (340)
+-++|+ +..|+|||+++..|...+. +.|.+++++|..-.
T Consensus 24 ~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 24 RHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 456777 6678899999999999999 78999999988643
No 312
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.95 E-value=0.18 Score=46.94 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~ 90 (340)
..|+...+..|+|||+++.++|..... .+.+|++||+...
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 445555589999999999999975442 1248999999864
No 313
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.94 E-value=0.1 Score=44.08 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+|+|. +--|+||||++..|+..+...|.+|..+...
T Consensus 2 ~I~ie-G~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 2 FIVFE-GIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 56666 6778999999999999999999999776543
No 314
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.89 E-value=0.13 Score=45.06 Aligned_cols=42 Identities=24% Similarity=0.195 Sum_probs=32.7
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEE-EecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVA-IDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll-iD~D~~ 90 (340)
....+|++. +..|+||||++..|+..+...+..+.+ +.+|..
T Consensus 31 ~~~~iigi~-G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 31 QRRTIVGIA-GPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 445666666 888999999999999999987666655 777653
No 315
>PRK08840 replicative DNA helicase; Provisional
Probab=93.88 E-value=0.097 Score=50.92 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~ 90 (340)
.-+.|.++..|+|||++|.|+|...|. .|++|+++.+...
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 456677799999999999999999984 5999999999876
No 316
>PRK05642 DNA replication initiation factor; Validated
Probab=93.82 E-value=0.088 Score=46.35 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=30.4
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+..+..|+|||.++..++..+.++|.+|++++++.
T Consensus 49 ~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 49 YLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 44488899999999999999988899999998763
No 317
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.82 E-value=0.083 Score=47.53 Aligned_cols=34 Identities=35% Similarity=0.352 Sum_probs=25.8
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+..|-.|+||||+|..|+..+.+.+.+|.+++-|
T Consensus 5 il~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~ 38 (270)
T PF08433_consen 5 ILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD 38 (270)
T ss_dssp EEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred EEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 4448899999999999999999999999999844
No 318
>PRK05748 replicative DNA helicase; Provisional
Probab=93.78 E-value=0.097 Score=50.79 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=35.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGLR 92 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~ 92 (340)
.-+.+.++..|+|||+++.++|...+. .|.+|+++.+.....
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~ 245 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAE 245 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHH
Confidence 346666799999999999999999884 599999999987633
No 319
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.77 E-value=0.086 Score=48.85 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=31.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+-+.++ +..|+|||.+|..+|..+.++|++|+.+.++
T Consensus 184 ~~Lll~-G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFY-GNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 456666 5779999999999999999999999998764
No 320
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.77 E-value=0.16 Score=46.16 Aligned_cols=43 Identities=33% Similarity=0.344 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL--GFSVVAIDADVGL 91 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~~ 91 (340)
+...+|+|. +..|+||||+|..|...+.+. +.+|.++.+|...
T Consensus 60 ~~p~IIGIa-G~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIA-GSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 445677777 677899999999999888854 4479999888653
No 321
>PRK06904 replicative DNA helicase; Validated
Probab=93.75 E-value=0.099 Score=50.97 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=35.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGL 91 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~ 91 (340)
.-+.|.++..|+|||+++.|+|...|. .|.+|+++-+....
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~ 262 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPA 262 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 346677799999999999999999885 59999999998763
No 322
>PRK08727 hypothetical protein; Validated
Probab=93.74 E-value=0.096 Score=46.08 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=30.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
-+.++ +..|+|||.++..++..+.+.|++|.++.++
T Consensus 43 ~l~l~-G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 43 WLYLS-GPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 35555 7799999999999999999999999999764
No 323
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.74 E-value=0.1 Score=47.89 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=32.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.+-+.++ +.-|+|||.++..+|..++++|++|.++.+.
T Consensus 156 ~~gl~L~-G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 156 VKGLYLY-GDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 3456666 6789999999999999999999999998664
No 324
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.71 E-value=0.11 Score=53.49 Aligned_cols=36 Identities=31% Similarity=0.280 Sum_probs=30.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.+..=+-.|+||||+-+.|-..|...|++|||.-..
T Consensus 687 y~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyT 722 (1100)
T KOG1805|consen 687 YALILGMPGTGKTTTISLLIKILVALGKKVLLTSYT 722 (1100)
T ss_pred hheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehh
Confidence 334447789999999999999999999999997543
No 325
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.71 E-value=0.31 Score=44.41 Aligned_cols=43 Identities=30% Similarity=0.399 Sum_probs=33.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHH----CC------CcEEEEecCCCCCCc
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLAR----LG------FSVVAIDADVGLRNL 94 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~----~g------~~VlliD~D~~~~~l 94 (340)
+..+..+-||+||||++..|..+|+. -| .+|++|.+.....++
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~ 142 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDI 142 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHH
Confidence 45666699999999999999999884 14 378888887664444
No 326
>PF13173 AAA_14: AAA domain
Probab=93.70 E-value=0.11 Score=40.91 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+++.+. +--||||||++.+++..+. ...+++.+|+|..
T Consensus 3 ~~~~l~-G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILT-GPRGVGKTTLLKQLAKDLL-PPENILYINFDDP 40 (128)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHhc-ccccceeeccCCH
Confidence 566666 5568999999999998877 5668999999864
No 327
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=93.68 E-value=1.2 Score=42.72 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=41.9
Q ss_pred CCEEEEcCCCCCC---------H----HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID---------A----GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~---------~----~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
..++++|||+... . .....+..||.+++|++........-.++.+.+...+ ..+.+|+|+++-.
T Consensus 220 ~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~-~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAG-KALVIVVNKWDLV 296 (429)
T ss_pred cEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcC-CcEEEEEECcccC
Confidence 4688999998321 1 1134567899999999886543334445555555544 4577999999864
No 328
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.67 E-value=0.14 Score=48.63 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=33.6
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+-+|+|. +..|+||||++..|...+...|.++..|..|-.
T Consensus 211 ~PlIIGIs-G~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 211 PPLVIGFS-APQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 44566666 677899999999999888877889999988865
No 329
>PRK09866 hypothetical protein; Provisional
Probab=93.62 E-value=0.36 Score=48.30 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=46.2
Q ss_pred CCCCEEEEcCCCCCC---H----HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCC-CceEEEEecccCC
Q 047623 165 GSPDFILIDCPAGID---A----GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGI-RDIKMVVNRVRTD 231 (340)
Q Consensus 165 ~~~D~VIiD~~~~~~---~----~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~-~~~~vviN~~~~~ 231 (340)
..+.+|++|||+-.. . .+...+..||.|+.+++....--..-..+.+.+...+. ..+.+|+|+++..
T Consensus 228 ~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 228 YPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred ccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 358899999999432 1 34556788999999999865322223456666666543 3688999999964
No 330
>COG4240 Predicted kinase [General function prediction only]
Probab=93.57 E-value=0.13 Score=44.59 Aligned_cols=40 Identities=30% Similarity=0.255 Sum_probs=32.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLG-FSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g-~~VlliD~D~~ 90 (340)
..|...++-.|+||||+++.+-..|+++| .+|+-+.+|--
T Consensus 50 Pli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl 90 (300)
T COG4240 50 PLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL 90 (300)
T ss_pred ceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence 34444457788999999999999999997 69999988853
No 331
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.53 E-value=0.11 Score=44.94 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=32.6
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRN 93 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~ 93 (340)
...+|+|. +-+|+||||+|..|...|... ++.+|..|.-.-+
T Consensus 7 ~~iiIgIa-G~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~ 48 (218)
T COG0572 7 KVIIIGIA-GGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKD 48 (218)
T ss_pred ceEEEEEe-CCCCCCHHHHHHHHHHHhCcC--cceEeeccccccc
Confidence 44678887 566889999999999988754 8888888865443
No 332
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.51 E-value=0.18 Score=50.27 Aligned_cols=43 Identities=30% Similarity=0.367 Sum_probs=35.1
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG 90 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~ 90 (340)
.+.+.+|.++ +-.|+||||+|..||..|.. .|.++.++|.|.-
T Consensus 389 ~~~g~~Ivl~-Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 389 HKQGFTVFFT-GLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred cCCCeEEEEE-CCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 3445566665 88899999999999999987 7888999998853
No 333
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.51 E-value=0.28 Score=44.21 Aligned_cols=42 Identities=36% Similarity=0.495 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CC-cEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GF-SVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~-~VlliD~D~~ 90 (340)
+..++|+++ +-||+||||+|..++.....+ .+ .+.-+++...
T Consensus 17 ~~~~~v~I~-G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~ 60 (287)
T PF00931_consen 17 NEVRVVAIV-GMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN 60 (287)
T ss_dssp TSSEEEEEE-ESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-
T ss_pred CCeEEEEEE-cCCcCCcceeeeecccccccccccccccccccccc
Confidence 556788887 788899999999999775533 22 4666666644
No 334
>PRK06321 replicative DNA helicase; Provisional
Probab=93.44 E-value=0.13 Score=50.19 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~ 90 (340)
-+.|.++..|+|||+++.++|..+| +.|++|+++.+...
T Consensus 227 ~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs 266 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT 266 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 4666779999999999999999998 45999999998876
No 335
>PRK08118 topology modulation protein; Reviewed
Probab=93.43 E-value=0.088 Score=43.76 Aligned_cols=24 Identities=33% Similarity=0.711 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
+.|.|. +-+|+||||+|..|+..+
T Consensus 2 ~rI~I~-G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILI-GSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 346666 678999999999888764
No 336
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.42 E-value=0.12 Score=44.31 Aligned_cols=34 Identities=47% Similarity=0.617 Sum_probs=26.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
|+.+|+++ ++-|+||||+|- .+++.|.+| ||+|.
T Consensus 1 ~~~iIglT-G~igsGKStva~----~~~~~G~~v--idaD~ 34 (201)
T COG0237 1 MMLIIGLT-GGIGSGKSTVAK----ILAELGFPV--IDADD 34 (201)
T ss_pred CceEEEEe-cCCCCCHHHHHH----HHHHcCCeE--EEccH
Confidence 57899999 788999999874 455566666 67774
No 337
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=93.42 E-value=0.14 Score=49.91 Aligned_cols=52 Identities=29% Similarity=0.443 Sum_probs=36.1
Q ss_pred CCCCEEEEEEcC---CCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc
Q 047623 47 GETPRVVVITSG---KGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE 101 (340)
Q Consensus 47 ~~~~~iI~v~s~---kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~ 101 (340)
.+.+|.|.|++- .-|.||||++..|+..|++.|+++.+. .+.|++.-.||++
T Consensus 51 ~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~---lRePSlGP~fG~K 105 (557)
T PF01268_consen 51 KPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAA---LREPSLGPVFGIK 105 (557)
T ss_dssp S---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEE---E----CHHHHCST
T ss_pred cCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEE---EecCCCCCccCcc
Confidence 467899988875 459999999999999999999998875 4458888888877
No 338
>PRK06893 DNA replication initiation factor; Validated
Probab=93.34 E-value=0.13 Score=45.11 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+.+.++ +..|+|||.++..+|..+.++|.+|.+++++
T Consensus 40 ~~l~l~-G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIW-GGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 344444 8889999999999999999999999999885
No 339
>PRK08116 hypothetical protein; Validated
Probab=93.25 E-value=0.12 Score=46.40 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
-+.++ +..|+|||.+|..+|..+.++|.+|+++++.
T Consensus 116 gl~l~-G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 116 GLLLW-GSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 34444 6789999999999999999889999998753
No 340
>PRK13949 shikimate kinase; Provisional
Probab=93.24 E-value=0.55 Score=39.05 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+.|.+. +-.|+||||++..||..+. . -.+|+|
T Consensus 2 ~~I~li-G~~GsGKstl~~~La~~l~---~--~~id~D 33 (169)
T PRK13949 2 ARIFLV-GYMGAGKTTLGKALARELG---L--SFIDLD 33 (169)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHcC---C--Ceeccc
Confidence 345565 6678999999999998763 2 346666
No 341
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.23 E-value=0.11 Score=42.96 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=24.2
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
++.|.++ +..|+||||+|..||..+ |. .++|.|
T Consensus 4 ~~~i~l~-G~~GsGKstla~~La~~l---~~--~~~d~d 36 (175)
T PRK00131 4 GPNIVLI-GFMGAGKSTIGRLLAKRL---GY--DFIDTD 36 (175)
T ss_pred CCeEEEE-cCCCCCHHHHHHHHHHHh---CC--CEEECh
Confidence 3455555 789999999999999987 33 445665
No 342
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=93.22 E-value=0.2 Score=47.95 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=49.0
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.+.|+|||+... ..+...+..+|.+++|+.....-.....+....+...+.+.+.+++|+.+..
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLV 146 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccc
Confidence 46889999999542 2345567889999999998755445555666666666777788999999864
No 343
>PRK08181 transposase; Validated
Probab=93.18 E-value=0.12 Score=46.50 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
-+.++ +..|+|||.++..+|..+.++|++|..+.+
T Consensus 108 nlll~-Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 108 NLLLF-GPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred eEEEE-ecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 34444 788999999999999999999999998865
No 344
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.11 E-value=0.18 Score=38.46 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=18.9
Q ss_pred cCCCCCcHHHHHHHHHHHHHHC
Q 047623 57 SGKGGVGKTTTTANVGLSLARL 78 (340)
Q Consensus 57 s~kGGvGKTt~a~~LA~~la~~ 78 (340)
.+..|+|||++|..||..+.+.
T Consensus 4 ~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 4 YGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred ECCCCCCHHHHHHHHHHHHHHH
Confidence 3666999999999999999864
No 345
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=93.11 E-value=0.38 Score=47.05 Aligned_cols=155 Identities=19% Similarity=0.241 Sum_probs=80.1
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHH--HHHHHHHHCCC----cEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccc
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTA--NVGLSLARLGF----SVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLD 119 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~--~LA~~la~~g~----~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~ 119 (340)
.....+.+..-+++||-|...++. +-|-.+|+.|. +.+.+++-.- .--.+.|..+.-..+|...+.+....-
T Consensus 109 ~~~g~~~~~a~GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~--adV~LVG~PNAGKSTLln~Ls~akpkI 186 (500)
T PRK12296 109 VGAGTRFVAAAGGRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKSV--ADVGLVGFPSAGKSSLISALSAAKPKI 186 (500)
T ss_pred ccCCCEEEEEccCCCcCCCcccCCccCCCCccccCCCCCceEEEEEEeccc--ceEEEEEcCCCCHHHHHHHHhcCCccc
Confidence 345568899999999999976653 33444555443 2333333322 112334555544455666665432110
Q ss_pred cceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC---------HHHHHHHhcCC
Q 047623 120 QALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID---------AGFITAITPAN 190 (340)
Q Consensus 120 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~---------~~~~~~l~~ad 190 (340)
......+..+++.++- ...+.++|+|+|+-.. ......+..||
T Consensus 187 adypfTTl~P~lGvv~----------------------------~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 187 ADYPFTTLVPNLGVVQ----------------------------AGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cccCcccccceEEEEE----------------------------ECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 0000011112221110 1246789999999431 12233456799
Q ss_pred eEEEEeCCCh-----hhHHHHHHHHHHHHhc-------------CCCceEEEEecccC
Q 047623 191 EAVLVTTPDI-----TSLRDADRVTGLLECD-------------GIRDIKMVVNRVRT 230 (340)
Q Consensus 191 ~viiv~~~~~-----~s~~~~~~~~~~l~~~-------------~~~~~~vviN~~~~ 230 (340)
.++.|++.+. ..+.....+.+.+..+ ......+|+|+++-
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL 296 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV 296 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc
Confidence 9999988752 2333333333333321 12457799999875
No 346
>PTZ00301 uridine kinase; Provisional
Probab=93.09 E-value=0.19 Score=43.43 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHC-CC-cEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARL-GF-SVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~-~VlliD~D~~ 90 (340)
.+|+|. +-+|+||||+|..|+..+.+. |- .|+++-.|..
T Consensus 4 ~iIgIa-G~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y 44 (210)
T PTZ00301 4 TVIGIS-GASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY 44 (210)
T ss_pred EEEEEE-CCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 677777 667889999999999887543 43 4667777754
No 347
>PLN02796 D-glycerate 3-kinase
Probab=93.06 E-value=0.18 Score=46.82 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..-+|+|. +..|+||||++..|+..+...|.++..|-.|-.
T Consensus 99 ~pliIGI~-G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 99 PPLVIGIS-APQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCEEEEEE-CCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 34566666 778999999999999999887888888877744
No 348
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.03 E-value=0.32 Score=40.51 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=23.3
Q ss_pred CCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 59 KGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 59 kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.-|=||||.|..+|...+-+|+||+++-+=
T Consensus 11 G~GKGKTTAAlGlalRA~G~G~rV~ivQFl 40 (172)
T PF02572_consen 11 GDGKGKTTAALGLALRAAGHGMRVLIVQFL 40 (172)
T ss_dssp SSSS-HHHHHHHHHHHHHCTT--EEEEESS
T ss_pred CCCCCchHHHHHHHHHHHhCCCEEEEEEEe
Confidence 346699999999999999999999998664
No 349
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=92.96 E-value=0.46 Score=41.54 Aligned_cols=63 Identities=16% Similarity=0.293 Sum_probs=46.5
Q ss_pred CCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623 167 PDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~ 230 (340)
..++++|||+.. ......+..+|.++++++...........+.+.+...+.+.+.+|+|+.+.
T Consensus 83 ~~i~~vDtPg~~-~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~ 145 (225)
T cd01882 83 RRLTFIECPNDI-NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDL 145 (225)
T ss_pred ceEEEEeCCchH-HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 567899999765 344556788999999998765444445667777777777666679999986
No 350
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=92.95 E-value=0.78 Score=36.52 Aligned_cols=66 Identities=17% Similarity=0.073 Sum_probs=48.1
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
.+++.++|+|+.. .......+..+|.+++++..+. .+...+..++..+.... ...+.+|+|+.+..
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 48 TVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 4788999999854 2344556778999999988854 55777777777776544 35678999998764
No 351
>PRK07933 thymidylate kinase; Validated
Probab=92.94 E-value=0.2 Score=43.44 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=30.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.|+|- +--|+||||.+..|+.+|..+|.+|.++...
T Consensus 2 ~IviE-G~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAIE-GVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 45555 5568999999999999999999999998764
No 352
>PRK05636 replicative DNA helicase; Provisional
Probab=92.88 E-value=0.17 Score=49.77 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~ 90 (340)
.-+.+.++..|+|||++|.++|...+ +.|++|+++.+...
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs 305 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence 44666779999999999999999888 45899999988876
No 353
>PF12846 AAA_10: AAA-like domain
Probab=92.85 E-value=0.17 Score=45.77 Aligned_cols=33 Identities=42% Similarity=0.428 Sum_probs=29.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 58 GKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
++.|+||||++.++...+...|..++++|....
T Consensus 8 G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~ 40 (304)
T PF12846_consen 8 GKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGD 40 (304)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCch
Confidence 788999999999999999999999999976633
No 354
>PRK06547 hypothetical protein; Provisional
Probab=92.84 E-value=0.16 Score=42.52 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=26.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..+.+|+|. +..|+||||+|..||..+ | +.++++|.
T Consensus 13 ~~~~~i~i~-G~~GsGKTt~a~~l~~~~---~--~~~~~~d~ 48 (172)
T PRK06547 13 GGMITVLID-GRSGSGKTTLAGALAART---G--FQLVHLDD 48 (172)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHh---C--CCeecccc
Confidence 455677777 688999999999998863 3 44556664
No 355
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=92.81 E-value=0.18 Score=51.25 Aligned_cols=43 Identities=35% Similarity=0.432 Sum_probs=36.0
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.++++|.++ +..|+||||+|..|+..|...|..+.++|.|.-
T Consensus 457 ~~~~~~i~~~-G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~ 499 (632)
T PRK05506 457 GQKPATVWFT-GLSGSGKSTIANLVERRLHALGRHTYLLDGDNV 499 (632)
T ss_pred CCCcEEEEec-CCCCchHHHHHHHHHHHHHHcCCCEEEEcChhh
Confidence 3445666665 788999999999999999988999999999864
No 356
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=92.80 E-value=0.41 Score=43.31 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=24.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..--|+|. +-..+||||++-++- |.+|..+....+
T Consensus 71 k~L~vavI-G~PNvGKStLtN~mi------g~kv~~vS~K~~ 105 (379)
T KOG1423|consen 71 KSLYVAVI-GAPNVGKSTLTNQMI------GQKVSAVSRKVH 105 (379)
T ss_pred eEEEEEEE-cCCCcchhhhhhHhh------CCcccccccccc
Confidence 33446666 678999999997653 678877655544
No 357
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=92.74 E-value=0.26 Score=40.47 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=41.0
Q ss_pred CCCEEEEcCCCCC------CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecc
Q 047623 166 SPDFILIDCPAGI------DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRV 228 (340)
Q Consensus 166 ~~D~VIiD~~~~~------~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~ 228 (340)
..+++|||+|+-. ...+...+..+|.++.|+.+.......-...+.........+..+|+|++
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4789999999832 24566677889999999988774443333333333333445677888874
No 358
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=92.73 E-value=2.2 Score=39.14 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=35.7
Q ss_pred CCCEEEEcCCCCCCHH-----HHHHHh------cCCeEEEEeCCChhhHHHH-HHHHHHHHhc-C---CCceEEEEeccc
Q 047623 166 SPDFILIDCPAGIDAG-----FITAIT------PANEAVLVTTPDITSLRDA-DRVTGLLECD-G---IRDIKMVVNRVR 229 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~~-----~~~~l~------~ad~viiv~~~~~~s~~~~-~~~~~~l~~~-~---~~~~~vviN~~~ 229 (340)
.+.+.|||||+-.+.. ....+. ..|.+++|...+...+... ..+++.+... | .....+++++.+
T Consensus 85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d 164 (313)
T TIGR00991 85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQ 164 (313)
T ss_pred CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCc
Confidence 4678899998854321 112222 3788888866543322211 2333333321 1 256778889887
Q ss_pred CC
Q 047623 230 TD 231 (340)
Q Consensus 230 ~~ 231 (340)
..
T Consensus 165 ~~ 166 (313)
T TIGR00991 165 FS 166 (313)
T ss_pred cC
Confidence 43
No 359
>PF05729 NACHT: NACHT domain
Probab=92.69 E-value=0.14 Score=41.71 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=22.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLG 79 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g 79 (340)
+.+..+.+|+||||++..++..+++.+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 345558999999999999999999864
No 360
>PRK07004 replicative DNA helicase; Provisional
Probab=92.65 E-value=0.18 Score=49.13 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=34.5
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~ 90 (340)
.-+.|.++..|+|||+++.++|..+|. .|++|+++-+...
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~ 253 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMP 253 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 346677799999999999999999884 6999999998876
No 361
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=92.61 E-value=0.21 Score=42.31 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=29.0
Q ss_pred ccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHH
Q 047623 163 QEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDAD 207 (340)
Q Consensus 163 ~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~ 207 (340)
.-..|.|||+|.|=-+.. ..+..+..+++|+.+....++.+.
T Consensus 103 ~l~G~r~ivlDiPLLFE~---~~~~~~~~tvvV~cd~~~Ql~Rl~ 144 (225)
T KOG3220|consen 103 LLRGYRVIVLDIPLLFEA---KLLKICHKTVVVTCDEELQLERLV 144 (225)
T ss_pred HhcCCeEEEEechHHHHH---hHHhheeeEEEEEECcHHHHHHHH
Confidence 345899999999753322 355668888888887766665543
No 362
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.55 E-value=0.56 Score=39.40 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=26.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 58 GKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+.-|=||||.|..+|.-..-+|+||+++-+=
T Consensus 35 TG~GKGKTTAAlG~alRa~GhG~rv~vvQFi 65 (198)
T COG2109 35 TGNGKGKTTAALGLALRALGHGLRVGVVQFI 65 (198)
T ss_pred ecCCCChhHHHHHHHHHHhcCCCEEEEEEEe
Confidence 4457799999999999999999999998663
No 363
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.52 E-value=0.19 Score=43.47 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=25.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH--------HHCCCcEEEEec
Q 047623 53 VVITSGKGGVGKTTTTANVGLSL--------ARLGFSVVAIDA 87 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~l--------a~~g~~VlliD~ 87 (340)
+++..+-.|+|||++.++++..+ ...+.+++++--
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~ 61 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSP 61 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEES
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecC
Confidence 67777888999999999999998 455778887643
No 364
>PRK06921 hypothetical protein; Provisional
Probab=92.51 E-value=0.19 Score=45.16 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=31.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEec
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDA 87 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~ 87 (340)
..-+.++ +..|+|||.++..+|..+.++ |++|+.+.+
T Consensus 117 ~~~l~l~-G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALL-GQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3456666 677999999999999999988 999998875
No 365
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=92.48 E-value=0.21 Score=48.68 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=41.7
Q ss_pred CCCCEEEEEEcCC---CCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc
Q 047623 47 GETPRVVVITSGK---GGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE 101 (340)
Q Consensus 47 ~~~~~iI~v~s~k---GGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~ 101 (340)
.+.+|.|.|++-. -|.||||++..|+..|.+.|+++++. .+.|++.-.||++
T Consensus 60 ~~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~~---lRePSlGP~FGiK 114 (587)
T PRK13507 60 RPDGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSGA---IRQPSGGPTMNIK 114 (587)
T ss_pred CCCCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEEE---EecCCcCCcCCcc
Confidence 4567888888754 59999999999999999999998876 3447777777665
No 366
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.48 E-value=0.44 Score=43.96 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=29.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHH---CC---CcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLAR---LG---FSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~---~g---~~VlliD~D~~ 90 (340)
+.++.+. +..|+|||+++.+++..... .| .+|++||....
T Consensus 96 g~i~~i~-G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 96 GSITEIF-GEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred CeEEEEE-CCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 4455554 79999999999999874332 33 48999999864
No 367
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.41 E-value=0.2 Score=44.17 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+.+ .+..|+|||+++..++..+.+.|.+|.++.++.
T Consensus 47 ~l~l-~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYL-WSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4444 478899999999999999998899999998874
No 368
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.25 E-value=0.15 Score=43.23 Aligned_cols=32 Identities=31% Similarity=0.289 Sum_probs=24.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
|+|. +..|+||||+|..|+..+. .+.+|..|.
T Consensus 2 i~i~-G~sgsGKTtla~~l~~~~~----~~~~i~~Dd 33 (187)
T cd02024 2 VGIS-GVTNSGKTTLAKLLQRILP----NCCVIHQDD 33 (187)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHcC----CCeEEcccc
Confidence 5555 7889999999999998862 466777774
No 369
>PRK00698 tmk thymidylate kinase; Validated
Probab=92.21 E-value=0.34 Score=41.30 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=28.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI 85 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 85 (340)
+++|+|. +-.|+||||++..|+..+...|..+...
T Consensus 3 ~~~I~ie-G~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 3 GMFITIE-GIDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 4677777 6678999999999999999888776654
No 370
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.20 E-value=0.15 Score=39.93 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=29.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC-----CCcEEEEecCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARL-----GFSVVAIDADVG 90 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~-----g~~VlliD~D~~ 90 (340)
+.+..+..|+|||+++.+++..+... ..+++.+++...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS 48 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC
Confidence 34444888999999999999998864 668888887765
No 371
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=92.20 E-value=0.93 Score=38.33 Aligned_cols=65 Identities=12% Similarity=0.193 Sum_probs=44.8
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.++|+|+... ......+..+|.+++|+............++..+...+.+ +.+++|+++..
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~ 130 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRP 130 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCC
Confidence 47789999998543 3445567889999999988654334444445555544544 67899999864
No 372
>PLN02348 phosphoribulokinase
Probab=92.17 E-value=0.34 Score=45.75 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=32.7
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC---------------CcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLG---------------FSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g---------------~~VlliD~D~~ 90 (340)
+...+|+|. +-.|+||||+|..|+..|...+ ..+.+|.+|-.
T Consensus 47 ~~p~IIGIa-G~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 47 DGTVVIGLA-ADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence 344677777 7788999999999999997542 46788888854
No 373
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.15 E-value=0.21 Score=46.83 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=30.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH--HHCCCcEEEEecCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSL--ARLGFSVVAIDADV 89 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~l--a~~g~~VlliD~D~ 89 (340)
.+.+..+..|+|||.+|.++|..+ ...+.+++++-.+.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH 41 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence 456667899999999999999999 66777777776553
No 374
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.15 E-value=0.24 Score=42.27 Aligned_cols=36 Identities=33% Similarity=0.497 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
+++.+. +..|+||||+...++..+...|++|+++-.
T Consensus 19 ~~~~l~-G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 19 RVSVLQ-GPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp SEEEEE-ESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred eEEEEE-ECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 455554 668999999999999999999999998743
No 375
>PLN02759 Formate--tetrahydrofolate ligase
Probab=92.07 E-value=0.3 Score=48.01 Aligned_cols=52 Identities=25% Similarity=0.240 Sum_probs=41.1
Q ss_pred CCCCEEEEEEcC---CCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCCCCchhccCCc
Q 047623 47 GETPRVVVITSG---KGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGLRNLDLLLGLE 101 (340)
Q Consensus 47 ~~~~~iI~v~s~---kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~~~~ 101 (340)
.+.+|.|.|++- .-|.||||++..|+..|.+ .|+++++. .+.|++.-.||++
T Consensus 66 ~~~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~~---lRePSlGP~FGiK 121 (637)
T PLN02759 66 APDGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTC---LRQPSQGPTFGIK 121 (637)
T ss_pred CCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEEE---eecCCcCCcCCcc
Confidence 456788888764 4599999999999999998 79999875 4447777677765
No 376
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=92.04 E-value=1 Score=37.26 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=40.4
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.++|+|+... ......+..+|.++++.+.... +....... ..+...+. .+.+|+|+.+..
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~-~~~~~~~~-~iiiv~NK~Dl~ 132 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANF-YLALENNL-EIIPVINKIDLP 132 (179)
T ss_pred cEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHH-HHHHHcCC-CEEEEEECCCCC
Confidence 47889999998543 3445567889999999987542 22222222 22223333 477899999863
No 377
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=91.97 E-value=0.28 Score=45.09 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~ 90 (340)
+.++-|+ +..|+|||+++.++|...+. .+.+|++||+...
T Consensus 95 g~i~ei~-G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 95 QAITEVF-GEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 4444444 79999999999999988763 2339999999864
No 378
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=91.94 E-value=0.27 Score=49.91 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=47.5
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.++++|+|+... ..+...+..+|.+++|+..+..-.....+....+...+.+.+.+++|+.+..
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~ 170 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLV 170 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccc
Confidence 57889999999542 2234567789999999988655444455556666666667788899999863
No 379
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=91.94 E-value=0.29 Score=42.49 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=44.1
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhh-------HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITS-------LRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.++|+|+... ......+..+|.+++|++..... ...+.+........+.+.+.+++|+.+..
T Consensus 76 ~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 76 KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 58899999998532 22344556799999998886531 12334444444555656788899999864
No 380
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=91.93 E-value=0.36 Score=46.93 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=48.4
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
...+.+||+|+... ..+.+.+..+|.+++|+..+.. ....+.+.+..++..+.+.+.+++|+++..
T Consensus 116 ~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 116 KRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLV 184 (460)
T ss_pred cceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEeccccc
Confidence 35689999999542 2334556789999999998764 344556666667777888888999999864
No 381
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.91 E-value=0.13 Score=41.03 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=23.4
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.++.+..|+||||+|..|+..+. ..+||.|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 45558889999999988876543 66677775
No 382
>PRK04040 adenylate kinase; Provisional
Probab=91.87 E-value=0.27 Score=41.77 Aligned_cols=26 Identities=46% Similarity=0.514 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLA 76 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la 76 (340)
+++|+|+ +-.|+||||++..|+..+.
T Consensus 2 ~~~i~v~-G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVT-GVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEE-eCCCCCHHHHHHHHHHHhc
Confidence 5677777 7789999999999999885
No 383
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=91.86 E-value=0.44 Score=44.97 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=33.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
..+-+|.|+| ..|+||||++..|...|.++ ++|.++..+
T Consensus 3 ~~~~~i~i~G-~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~ 41 (369)
T PRK14490 3 FHPFEIAFCG-YSGSGKTTLITALVRRLSER-FSVGYYKHG 41 (369)
T ss_pred CCCEEEEEEe-CCCCCHHHHHHHHHHHHhhC-ceEEEEEeC
Confidence 3457889985 46889999999999999999 999999863
No 384
>PRK06851 hypothetical protein; Provisional
Probab=91.83 E-value=0.45 Score=44.65 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=34.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+++.+. +..|+||||+...++..+.++|.+|.+.-|-..
T Consensus 214 ~~~~~i~-G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~d 253 (367)
T PRK06851 214 KNRYFLK-GRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFD 253 (367)
T ss_pred ceEEEEe-CCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3455554 888999999999999999999999999988765
No 385
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=91.81 E-value=1.1 Score=43.39 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=37.1
Q ss_pred CCCEEEEcCCCCCCH--H--------HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA--G--------FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~--------~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.+.|+||++.... . +...+..+|.+++|++.+......-... +.......+.+|+|+.+-.
T Consensus 262 g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~---l~~~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 262 GIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEI---LEELKDKPVIVVLNKADLT 334 (449)
T ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHH---HHhcCCCCcEEEEEhhhcc
Confidence 366789999884321 1 2234667999999988754321111122 2222334677999998853
No 386
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=91.74 E-value=1.2 Score=36.01 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=44.1
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~ 231 (340)
.+++.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+... ....+.+|.|+.+..
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 3788999999853 233445667899988887764 45666666666655532 223567899998853
No 387
>PRK13351 elongation factor G; Reviewed
Probab=91.66 E-value=0.73 Score=47.34 Aligned_cols=85 Identities=21% Similarity=0.203 Sum_probs=59.2
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
.+.+.++|||+..+ ......+..+|.+++|++.............+.+...+.+ +.+++|+.+.... .-....++
T Consensus 72 ~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~--~~~~~~~~ 148 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP-RLIFINKMDRVGA--DLFKVLED 148 (687)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEECCCCCCC--CHHHHHHH
Confidence 47889999998653 3456678899999999988655444555666666666655 4589999986531 22234667
Q ss_pred HHHHhCCcee
Q 047623 244 IQEMLGLALL 253 (340)
Q Consensus 244 i~~~~g~~v~ 253 (340)
+.+.++.+..
T Consensus 149 i~~~l~~~~~ 158 (687)
T PRK13351 149 IEERFGKRPL 158 (687)
T ss_pred HHHHHCCCeE
Confidence 7788887654
No 388
>PRK06761 hypothetical protein; Provisional
Probab=91.65 E-value=0.21 Score=45.20 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=30.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEE-EecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVA-IDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll-iD~D~ 89 (340)
.++|.|. +-.|+||||++..|+..+...|.++-. .+.|+
T Consensus 3 ~~lIvI~-G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 3 TKLIIIE-GLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 3566666 567899999999999999888888875 45554
No 389
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=91.63 E-value=0.84 Score=46.88 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=58.4
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
++.+.++|||+... .....++..+|.+++|++....--.....+.+.+...+.+. .+++|+++..... ......+
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~--~~~~~~~ 150 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPR-IAFVNKMDKTGAN--FLRVVNQ 150 (689)
T ss_pred CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCE-EEEEECCCCCCCC--HHHHHHH
Confidence 58899999999653 33456788899999999876543344556666666666654 5899999865311 1223556
Q ss_pred HHHHhCCce-eEEec
Q 047623 244 IQEMLGLAL-LGVIP 257 (340)
Q Consensus 244 i~~~~g~~v-~~~Ip 257 (340)
+.+.++... ...||
T Consensus 151 i~~~l~~~~~~~~ip 165 (689)
T TIGR00484 151 IKQRLGANAVPIQLP 165 (689)
T ss_pred HHHHhCCCceeEEec
Confidence 777777543 23454
No 390
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=91.62 E-value=0.3 Score=47.75 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=46.2
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.+++||||+.... .+...+..+|.++++++.+..-.....+....+...+.+.+.+++|+++..
T Consensus 106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~ 173 (474)
T PRK05124 106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLV 173 (474)
T ss_pred CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccc
Confidence 478999999995422 234456789999999988654333344555555555666778899999864
No 391
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=91.61 E-value=0.43 Score=42.57 Aligned_cols=41 Identities=32% Similarity=0.332 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCc--EEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFS--VVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~--VlliD~D~ 89 (340)
+..-+|++. +.-|+||||+|..|+..+++.+.+ |-+|=+|-
T Consensus 80 ~~pfIIgia-GsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDG 122 (283)
T COG1072 80 QRPFIIGIA-GSVAVGKSTTARILQALLSRWPESPKVDLVTMDG 122 (283)
T ss_pred CCCEEEEec-cCccccHHHHHHHHHHHHhhCCCCCceEEEeccc
Confidence 444566665 778999999999999999998655 88888774
No 392
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=91.60 E-value=0.65 Score=47.38 Aligned_cols=88 Identities=19% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHH
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDI 244 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i 244 (340)
|.+-+||||++.+ .....+|..+|..++|++....-...+..+.+++...+.++ .+++|+.++-. .+-.....++
T Consensus 76 ~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~-i~fiNKmDR~~--a~~~~~~~~l 152 (697)
T COG0480 76 YRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPR-ILFVNKMDRLG--ADFYLVVEQL 152 (697)
T ss_pred eEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCe-EEEEECccccc--cChhhhHHHH
Confidence 8889999999775 44577899999999999998877778888888888877765 48899998754 2233456677
Q ss_pred HHHhCCcee-EEec
Q 047623 245 QEMLGLALL-GVIP 257 (340)
Q Consensus 245 ~~~~g~~v~-~~Ip 257 (340)
.+.++.... ..+|
T Consensus 153 ~~~l~~~~~~v~~p 166 (697)
T COG0480 153 KERLGANPVPVQLP 166 (697)
T ss_pred HHHhCCCceeeecc
Confidence 888876443 3444
No 393
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.60 E-value=0.19 Score=40.68 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=24.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+..+-.|+||||+|..|+..+ | ..++|.|.-
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL---G--APFIDGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc---C--CEEEeCccc
Confidence 3455888999999999998864 3 356787765
No 394
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=91.59 E-value=0.24 Score=44.29 Aligned_cols=40 Identities=30% Similarity=0.412 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~ 90 (340)
+.++=|+ +..|+|||.++.+||..... .+.+|++||.+-.
T Consensus 38 g~itEi~-G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~ 83 (256)
T PF08423_consen 38 GSITEIV-GESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGT 83 (256)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSS
T ss_pred CcEEEEE-EecccccchHHHHHHHHhhcccccccCCCceEEEeCCCC
Confidence 3444454 78899999999999976541 2568999999976
No 395
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=91.58 E-value=0.19 Score=42.90 Aligned_cols=41 Identities=29% Similarity=0.401 Sum_probs=28.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
...+.+.++++..|+||||++..+...+. +.....||.|.-
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~ 52 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEF 52 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGG
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHH
Confidence 34567778889999999999998877665 567888898864
No 396
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.48 E-value=0.27 Score=40.75 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=25.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
|++.|.++ +-.|+||||++..||..+ |.. ++|.|.
T Consensus 1 ~~~~i~~~-G~~GsGKst~~~~la~~l---g~~--~~d~D~ 35 (171)
T PRK03731 1 MTQPLFLV-GARGCGKTTVGMALAQAL---GYR--FVDTDQ 35 (171)
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEccH
Confidence 34566665 778999999999999876 443 567774
No 397
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=91.45 E-value=0.38 Score=41.22 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=42.9
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhh-HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITS-LRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
+.+.++|+|+... ......+..+|.+++|+..+... .......+..+...+...+.+++|+.+..
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~ 150 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLV 150 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 6789999998532 22244456679999999887521 12334455555555666678899999864
No 398
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=91.41 E-value=0.23 Score=41.62 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
.++|++.|+ .|+||||++..||..+
T Consensus 3 ~~ii~i~G~-~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG-PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHh
Confidence 467888755 9999999999999765
No 399
>PRK13946 shikimate kinase; Provisional
Probab=91.37 E-value=0.28 Score=41.38 Aligned_cols=34 Identities=38% Similarity=0.576 Sum_probs=25.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+.|.++ +-.|+||||++..||..| |.+ ++|.|.
T Consensus 10 ~~~I~l~-G~~GsGKsti~~~LA~~L---g~~--~id~D~ 43 (184)
T PRK13946 10 KRTVVLV-GLMGAGKSTVGRRLATML---GLP--FLDADT 43 (184)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence 3456666 668999999999999877 555 577773
No 400
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.34 E-value=5.6 Score=32.08 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=27.2
Q ss_pred cCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623 188 PANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRT 230 (340)
Q Consensus 188 ~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~ 230 (340)
....|=|++..|.. +-.+..+..+.++..|.+.+ +.++-+..
T Consensus 89 ~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~vS~~~~ 131 (143)
T PF10662_consen 89 NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEVSAVTG 131 (143)
T ss_pred CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-EEEECCCC
Confidence 45667777777666 55666677777777777765 55555443
No 401
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=91.32 E-value=2.4 Score=34.24 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=43.1
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..++.......+.+... ....+.+|.|+++-.
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 567789999854 444455677899888888764 44556666555555432 223577889998753
No 402
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.26 E-value=0.38 Score=37.50 Aligned_cols=30 Identities=37% Similarity=0.576 Sum_probs=24.1
Q ss_pred cCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 57 SGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 57 s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+..|+|||+++..+|..+ |.+++-+|+..
T Consensus 4 ~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~ 33 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYL---GFPFIEIDGSE 33 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHT---TSEEEEEETTH
T ss_pred ECcCCCCeeHHHHHHHhhc---ccccccccccc
Confidence 3778999999999999987 56777776654
No 403
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.23 E-value=0.34 Score=40.34 Aligned_cols=31 Identities=42% Similarity=0.482 Sum_probs=24.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623 54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAI 85 (340)
Q Consensus 54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 85 (340)
.++ ++.|+||||+...+...+...|.+|.-+
T Consensus 3 ~iT-G~pG~GKTTll~k~i~~l~~~~~~v~Gf 33 (168)
T PF03266_consen 3 FIT-GPPGVGKTTLLKKVIEELKKKGLPVGGF 33 (168)
T ss_dssp EEE-S-TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred EEE-CcCCCCHHHHHHHHHHHhhccCCccceE
Confidence 344 8899999999999999999887776543
No 404
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.16 E-value=0.22 Score=40.82 Aligned_cols=22 Identities=36% Similarity=0.441 Sum_probs=18.2
Q ss_pred EEcCCCCCcHHHHHHHHHHHHH
Q 047623 55 ITSGKGGVGKTTTTANVGLSLA 76 (340)
Q Consensus 55 v~s~kGGvGKTt~a~~LA~~la 76 (340)
..|++.|+||||+|..||..+.
T Consensus 4 tIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 4 TISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EeccCCCCChhHHHHHHHHHhC
Confidence 3469999999999998887654
No 405
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.13 E-value=2.4 Score=42.84 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=23.0
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLA 76 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la 76 (340)
++....+.|+ +..|+||||+|..||..|-
T Consensus 35 gRLpHA~LFt-GP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 35 QRLHHAYLFT-GTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CCCceEEEEE-CCCCCCHHHHHHHHHHHhc
Confidence 4455666666 6778999999999999875
No 406
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=91.11 E-value=1.5 Score=37.12 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=35.6
Q ss_pred CCCEEEEcCCCCCCH------HHHH---H----HhcCCeEEEEeCCChhhHHHHHHHHHHHHhc-C---CCceEEEEecc
Q 047623 166 SPDFILIDCPAGIDA------GFIT---A----ITPANEAVLVTTPDITSLRDADRVTGLLECD-G---IRDIKMVVNRV 228 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~------~~~~---~----l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-~---~~~~~vviN~~ 228 (340)
...++|||||+-.+. .... . ....|.+++++..+..+ ..-..+++.+.+. + .+...+++++.
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFT-EEEEQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcC-HHHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence 367889999884321 1111 1 12367788888766522 2233445555432 2 25677888887
Q ss_pred cC
Q 047623 229 RT 230 (340)
Q Consensus 229 ~~ 230 (340)
+.
T Consensus 127 d~ 128 (196)
T cd01852 127 DD 128 (196)
T ss_pred cc
Confidence 65
No 407
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=91.11 E-value=0.22 Score=43.80 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLA 76 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la 76 (340)
..|...|+-.||||||+|..+|.-|.
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rLg 114 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRLG 114 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHcC
Confidence 56677779999999999999998654
No 408
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=91.02 E-value=0.23 Score=47.06 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=42.0
Q ss_pred CCCCCEEEEEEcCC---CCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc
Q 047623 46 AGETPRVVVITSGK---GGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE 101 (340)
Q Consensus 46 ~~~~~~iI~v~s~k---GGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~ 101 (340)
.++.+|.|.|++-. -|.||||+++.|+..|.+.|+++..- .+.|++.-.||++
T Consensus 48 ~k~~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i~a---lRePSlGP~fGiK 103 (554)
T COG2759 48 NKPDGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAIIA---LREPSLGPVFGIK 103 (554)
T ss_pred cCCCceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchheEE---eccCCcCCccccc
Confidence 34668888888755 49999999999999999999998764 3347777777765
No 409
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=90.95 E-value=1.2 Score=42.58 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=33.5
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 90 (340)
.-+.+.++..|.|||++|.|+|..+|.. +++|+++-+...
T Consensus 196 ~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~ 236 (435)
T COG0305 196 GDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMS 236 (435)
T ss_pred CCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCC
Confidence 3466777999999999999999999975 677888887765
No 410
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.91 E-value=0.45 Score=37.86 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=29.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccC
Q 047623 58 GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLG 99 (340)
Q Consensus 58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~ 99 (340)
+..|+|||+++..+|..+ +.++..+-+... .+...++|
T Consensus 6 G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~-~~~~dl~g 43 (139)
T PF07728_consen 6 GPPGTGKTTLARELAALL---GRPVIRINCSSD-TTEEDLIG 43 (139)
T ss_dssp ESSSSSHHHHHHHHHHHH---TCEEEEEE-TTT-STHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHh---hcceEEEEeccc-ccccccee
Confidence 678999999999999999 788888888876 44444443
No 411
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=90.81 E-value=0.8 Score=46.07 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=50.6
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.+.|||||+..+. .....+..+|.++++++........+...++.+...+.+ ..+++|+.+..
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip-~IVviNKiD~~ 129 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRP 129 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC-EEEEEECCCCC
Confidence 478899999986432 345678899999999998766666777777777777776 56899999964
No 412
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=90.80 E-value=2 Score=35.01 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=45.4
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECDGI--RDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+... ......+..+|.++++...+. .++..+...++.+..... ..+.+|.|+.+..
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 6789999999642 223445677999999888754 466777777777765322 2467889998864
No 413
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.75 E-value=2.4 Score=39.69 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=23.3
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLAR 77 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~ 77 (340)
++.+..+.|. +.-|+||||+|..+|..+-.
T Consensus 42 grl~ha~L~~-G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 42 GKLHHALLFE-GPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCCeeEeeE-CCCCCCHHHHHHHHHHHHcC
Confidence 4455566666 67789999999999998764
No 414
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=90.71 E-value=0.95 Score=34.66 Aligned_cols=60 Identities=23% Similarity=0.385 Sum_probs=40.9
Q ss_pred CCCEEEEcCCCCCCH-----------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEec
Q 047623 166 SPDFILIDCPAGIDA-----------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNR 227 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~-----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~ 227 (340)
...++++|+|+-.+. .....+..+|.++++++.+...-.....+++.++ ....+.+|+|+
T Consensus 46 ~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~~~~i~v~NK 116 (116)
T PF01926_consen 46 NKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK--NKKPIILVLNK 116 (116)
T ss_dssp TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH--TTSEEEEEEES
T ss_pred eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh--cCCCEEEEEcC
Confidence 466789999994321 1233346799999999977633345667777774 55678888885
No 415
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=90.69 E-value=2 Score=37.27 Aligned_cols=34 Identities=35% Similarity=0.412 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCc--EEEEe
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFS--VVAID 86 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~--VlliD 86 (340)
.|.|+ +-.-+||||.|..|..+|.++|.| |.++|
T Consensus 3 LVvi~-G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 3 LVVIC-GLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred eEEEe-CCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 34444 778899999999999999999854 44443
No 416
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.65 E-value=0.22 Score=38.74 Aligned_cols=20 Identities=40% Similarity=0.479 Sum_probs=17.8
Q ss_pred EcCCCCCcHHHHHHHHHHHH
Q 047623 56 TSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 56 ~s~kGGvGKTt~a~~LA~~l 75 (340)
.++..|+||||+|..|+..+
T Consensus 3 i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 45788999999999999987
No 417
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=90.63 E-value=1.8 Score=34.99 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=45.5
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC-CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG-IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~vviN~~~~~ 231 (340)
.+.+.++|+++.. .......+..+|.++++.+.+ ..+...+...++.+.... ...+.+|.|+.+..
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 4788999998743 233455667899999998875 445666666666665442 24567889998753
No 418
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=90.56 E-value=6.5 Score=33.21 Aligned_cols=112 Identities=15% Similarity=0.070 Sum_probs=69.3
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcC-CCceEEEEecccCCcccccccccHH
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDG-IRDIKMVVNRVRTDMIKGEDMMSVL 242 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~-~~~~~vviN~~~~~~~~~~~~~~~~ 242 (340)
+.+-|.|+++.. ..........+|.++++.+. +..++..+...++.+.... ...+.+|-|+.+-.... . ....
T Consensus 55 ~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~--~-v~~~ 131 (189)
T cd04121 55 VKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR--Q-VATE 131 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhcc--C-CCHH
Confidence 677899998754 22334455789999998887 4778888888888886542 23567888998753210 0 1111
Q ss_pred HHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCC--HHHHHHHHHHHHHHhcccc
Q 047623 243 DIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPT--LAGLAFEQAAWRLVEQDSM 298 (340)
Q Consensus 243 ~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s--~~~~~~~~la~~i~~~~~~ 298 (340)
+..+ -+...+.++++.+.+. .....|..+++.+..+.+.
T Consensus 132 ~~~~-----------------~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~ 172 (189)
T cd04121 132 QAQA-----------------YAERNGMTFFEVSPLCNFNITESFTELARIVLMRHGR 172 (189)
T ss_pred HHHH-----------------HHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 1111 1112344455544332 3667788999888887764
No 419
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=90.55 E-value=3.1 Score=33.48 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=43.9
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..++.........+... ....+.+|.|+.+..
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 3778999999844 334445667888887777653 45566666665555543 234678999999864
No 420
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=90.41 E-value=2.8 Score=34.30 Aligned_cols=65 Identities=11% Similarity=-0.026 Sum_probs=46.1
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
..+.|+|+++.. .......+..+|.++++.+. +..++..+...++.+.... ...+.+|.|+.+..
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 567899998853 23344566789999999887 4667777777777776542 23577888998754
No 421
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=90.36 E-value=2.5 Score=34.37 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=44.6
Q ss_pred CCEEEEcCCCCC---CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC----CCceEEEEecccC
Q 047623 167 PDFILIDCPAGI---DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG----IRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~---~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~----~~~~~vviN~~~~ 230 (340)
+.+-|+|+|+.. .......+..+|.++++.+.+ ..++..+....+.+.... -..+.+|.|+.+-
T Consensus 47 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 118 (165)
T cd04146 47 VSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADL 118 (165)
T ss_pred EEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCch
Confidence 567789999855 233455677899999998874 566777777666666532 2357788898874
No 422
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=90.33 E-value=0.67 Score=39.98 Aligned_cols=37 Identities=32% Similarity=0.391 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
+++.|+|= +=-|+||||.+..|+.+|.++|.+|.+.-
T Consensus 2 ~g~fI~iE-GiDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 2 KGMFIVIE-GIDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35677776 55688999999999999999999888763
No 423
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=90.29 E-value=0.29 Score=44.63 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+.++.+..|+||||+|..|+..+. ....+|.|.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~ 36 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDD 36 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccH
Confidence 3444458899999999999988752 456677664
No 424
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=90.28 E-value=0.4 Score=42.04 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEE
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVA 84 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll 84 (340)
+|+|+| +.||||+...||..+..+|++|++
T Consensus 1 vi~~vG---~gGKTtl~~~l~~~~~~~g~~v~~ 30 (232)
T TIGR03172 1 VIAFVG---AGGKTSTMFWLAAEYRKEGYRVLV 30 (232)
T ss_pred CEEEEc---CCcHHHHHHHHHHHHHHCCCeEEE
Confidence 466665 479999999999999999999988
No 425
>PRK13947 shikimate kinase; Provisional
Probab=90.25 E-value=0.49 Score=39.07 Aligned_cols=32 Identities=41% Similarity=0.547 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
-|.+. +-.|+||||++..||..| |.+ ++|.|.
T Consensus 3 ~I~l~-G~~GsGKst~a~~La~~l---g~~--~id~d~ 34 (171)
T PRK13947 3 NIVLI-GFMGTGKTTVGKRVATTL---SFG--FIDTDK 34 (171)
T ss_pred eEEEE-cCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence 34444 778999999999998876 544 477774
No 426
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=90.23 E-value=0.43 Score=46.86 Aligned_cols=52 Identities=25% Similarity=0.276 Sum_probs=40.6
Q ss_pred CCCCEEEEEEcC---CCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCCCCCchhccCCc
Q 047623 47 GETPRVVVITSG---KGGVGKTTTTANVGLSLA-RLGFSVVAIDADVGLRNLDLLLGLE 101 (340)
Q Consensus 47 ~~~~~iI~v~s~---kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~~~l~~~~~~~ 101 (340)
++.+|.|.|++- .-|.||||++..|+..|. +.|+++++. .+.|++.-.||++
T Consensus 65 ~~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~~~---lRePSlGP~FGiK 120 (625)
T PTZ00386 65 SPNGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTFAC---IRQPSQGPTFGIK 120 (625)
T ss_pred CCCCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceEEE---EecCCcCCcCCcc
Confidence 456788888765 459999999999999999 679998875 3336666667655
No 427
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.22 E-value=5.3 Score=34.04 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEec
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDA 87 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~ 87 (340)
+|.|. +..|+||||+...++..+... +.+++.++-
T Consensus 3 lilI~-GptGSGKTTll~~ll~~~~~~~~~~i~t~e~ 38 (198)
T cd01131 3 LVLVT-GPTGSGKSTTLAAMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence 34444 788999999999988888754 445555543
No 428
>PRK13973 thymidylate kinase; Provisional
Probab=90.21 E-value=0.63 Score=40.26 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=30.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
++.|+|- +-.|+||||.+..|+.+|...|++|....
T Consensus 3 g~~IviE-G~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 3 GRFITFE-GGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4667775 66789999999999999999999997764
No 429
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.15 E-value=0.33 Score=41.55 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=24.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+.+.++.+|+||||+|..||..+ |..+ ++..|.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D~ 37 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGDY 37 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhHH
Confidence 355556899999999999888864 5444 455553
No 430
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=90.08 E-value=2.5 Score=36.67 Aligned_cols=65 Identities=17% Similarity=0.086 Sum_probs=45.8
Q ss_pred CCCEEEEcCCCCCCHHHHHHHh-cCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccC
Q 047623 166 SPDFILIDCPAGIDAGFITAIT-PANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRT 230 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~~~~~~l~-~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~ 230 (340)
.+++.|+|+++.........+. .+|.++++...+ ..++..+...++.+.... ...+.+|.|+.+-
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl 118 (221)
T cd04148 49 ESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDL 118 (221)
T ss_pred EEEEEEEeCCCcchHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhc
Confidence 4788999999865222233455 799999888774 567777777777776532 2467899999885
No 431
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=90.04 E-value=0.61 Score=44.94 Aligned_cols=66 Identities=26% Similarity=0.386 Sum_probs=45.4
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCCh--hhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDI--TSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~--~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++.+.++|+|+... ..+...+..+|.+++|++.+. .-.....+.+..+...+...+.+++|+.+..
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~ 152 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAV 152 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 58899999999542 223445678999999988864 2223344455555555666688999999864
No 432
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=90.01 E-value=2.8 Score=33.86 Aligned_cols=66 Identities=17% Similarity=0.064 Sum_probs=45.6
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++..++ ..++..+...++.+..... ..+.++.|+.+..
T Consensus 49 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 49 TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 3667899999853 222334556799999998874 5678888887777765442 2466788998754
No 433
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=89.79 E-value=1.1 Score=45.16 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=26.7
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEE
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVA 84 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll 84 (340)
-+.+..++++ +..|+||||++.-|+..+...| ++.+
T Consensus 373 i~~G~~vaIv-G~SGsGKSTL~~lL~g~~p~~G-~I~i 408 (588)
T PRK11174 373 LPAGQRIALV-GPSGAGKTSLLNALLGFLPYQG-SLKI 408 (588)
T ss_pred EcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCc-EEEE
Confidence 3567888998 6778899999999988773334 4443
No 434
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=89.72 E-value=2.7 Score=33.90 Aligned_cols=65 Identities=15% Similarity=-0.018 Sum_probs=44.7
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
+.+.++|+|+.. .......+..+|.++++..... .+...+...++.+.... ...+.+|.|+.+..
T Consensus 49 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 49 VKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 577899999854 2233445677999999888754 56766666666665432 24677899998854
No 435
>PRK06851 hypothetical protein; Provisional
Probab=89.71 E-value=0.89 Score=42.73 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=35.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD 95 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~ 95 (340)
.+.+.+..+..|+||||+...++..+.++|+.|-.+=+..+..++.
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slD 74 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLD 74 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCcee
Confidence 3455566688999999999999999999999888776655533443
No 436
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=89.71 E-value=0.52 Score=41.74 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=25.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
|.+|+++ +.=|+||||++.-|... .|.+| ||+|.-
T Consensus 1 M~iIGlT-GgIgSGKStVs~~L~~~---~G~~v--iDaD~i 35 (244)
T PTZ00451 1 MILIGLT-GGIACGKSTVSRILREE---HHIEV--IDADLV 35 (244)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHH---cCCeE--EehHHH
Confidence 4688888 66789999988665542 37666 888853
No 437
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=89.70 E-value=3.8 Score=32.90 Aligned_cols=65 Identities=17% Similarity=0.039 Sum_probs=44.7
Q ss_pred CCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623 167 PDFILIDCPAGIDA--GFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECDGI--RDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~ 231 (340)
+.+.++|+|+.... .....+..+|.++++...+. .+...+...++.+..... ..+.++.|+.+..
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 56789999985422 23445678999999988854 456666666666654322 4688999998873
No 438
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=89.68 E-value=0.6 Score=40.00 Aligned_cols=32 Identities=34% Similarity=0.408 Sum_probs=24.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
|++|+++ +.-|+||||++..|+. .|.. ++|+|
T Consensus 1 m~~igit-G~igsGKst~~~~l~~----~g~~--vid~D 32 (200)
T PRK14734 1 MLRIGLT-GGIGSGKSTVADLLSS----EGFL--IVDAD 32 (200)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHH----CCCe--EEeCc
Confidence 3678888 5668899999988873 5765 58887
No 439
>PRK14527 adenylate kinase; Provisional
Probab=89.68 E-value=0.47 Score=40.18 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
+++++|.|. +..|+||||+|..||..+
T Consensus 4 ~~~~~i~i~-G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 4 TKNKVVIFL-GPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 455777777 558999999999998765
No 440
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=89.64 E-value=0.58 Score=42.64 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+.+.++-.|+||||+|..||..| |..+ +|..|.
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l---~~~~-vi~~D~ 126 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRL---GIRS-VIGTDS 126 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh---CCCE-EEechH
Confidence 344455888999999999999877 5553 455554
No 441
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=89.55 E-value=2.6 Score=34.80 Aligned_cols=66 Identities=14% Similarity=0.045 Sum_probs=45.9
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~ 231 (340)
.+.+-|+|+++... ......+..+|.++++.+.+ ..+...+...++.+.... ...+.+|.|+.+-.
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 36788999998542 23345567899999888874 667777777777665432 23577889998753
No 442
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=89.49 E-value=2.5 Score=35.50 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=44.8
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~ 230 (340)
+.+.|+|+|+... ......+..+|.++++.+.+ ..++..+...++.+..... ..+.+|.|+.+-
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl 118 (191)
T cd04112 50 VKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADM 118 (191)
T ss_pred EEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccc
Confidence 6788999998542 22344567799999998875 4566777777777765432 357788899885
No 443
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=89.34 E-value=3.5 Score=34.98 Aligned_cols=65 Identities=12% Similarity=-0.019 Sum_probs=44.7
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECD-GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++.+. +..++..+...++.+... ....+.+|.|+.+..
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 567899999854 23344556779988888877 456777777777766553 224567889998753
No 444
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=89.32 E-value=9.4 Score=35.43 Aligned_cols=121 Identities=14% Similarity=0.175 Sum_probs=65.9
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc--hhccCCcCCCcccHHHhhcCCCccccceec
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL--DLLLGLENRVNYTVVEVLNGDCRLDQALVR 124 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 124 (340)
++.+..+.|. +..|+||+++|..+|..+--.+.. +.++. +.. +..+...
T Consensus 19 ~r~~ha~Lf~-G~~G~GK~~~A~~~A~~llC~~~~----~~~~C-g~C~sC~~~~~g----------------------- 69 (328)
T PRK05707 19 GRHPHAYLLH-GPAGIGKRALAERLAAALLCEAPQ----GGGAC-GSCKGCQLLRAG----------------------- 69 (328)
T ss_pred CCcceeeeeE-CCCCCCHHHHHHHHHHHHcCCCCC----CCCCC-CCCHHHHHHhcC-----------------------
Confidence 4666778887 566899999999999987632210 11222 111 1111000
Q ss_pred ccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh-ccCCCCEEEEcCCCCCCHHHHHHH----hc--CCeEEEEeC
Q 047623 125 DKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSR-QEGSPDFILIDCPAGIDAGFITAI----TP--ANEAVLVTT 197 (340)
Q Consensus 125 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~D~VIiD~~~~~~~~~~~~l----~~--ad~viiv~~ 197 (340)
..|++..+..... .....-+.++.+++.+... ....+.++|||-.-.++....+++ +. .+.+++.++
T Consensus 70 --~HPD~~~i~~~~~----~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 70 --SHPDNFVLEPEEA----DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred --CCCCEEEEeccCC----CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 1144444421111 1224556777777776653 245688999998887766554443 33 345555555
Q ss_pred CChhh
Q 047623 198 PDITS 202 (340)
Q Consensus 198 ~~~~s 202 (340)
.+...
T Consensus 144 ~~~~~ 148 (328)
T PRK05707 144 HQPSR 148 (328)
T ss_pred CChhh
Confidence 44433
No 445
>PLN02422 dephospho-CoA kinase
Probab=89.23 E-value=0.6 Score=40.96 Aligned_cols=34 Identities=38% Similarity=0.409 Sum_probs=25.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
|++|+++ +.-|+||||++..|+ +.|..| +|+|.-
T Consensus 1 M~~iglt-G~igsGKstv~~~l~----~~g~~~--idaD~~ 34 (232)
T PLN02422 1 MRVVGLT-GGIASGKSTVSNLFK----SSGIPV--VDADKV 34 (232)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHH----HCCCeE--EehhHH
Confidence 3578888 677899999998777 357765 888853
No 446
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=89.16 E-value=3.7 Score=33.43 Aligned_cols=66 Identities=11% Similarity=-0.061 Sum_probs=45.4
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+... ......+..+|.++++.+.. ..++..+...++.+..... ..+.+|.|+.+-.
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 37789999998542 23345567899999988875 4667777777766654322 3577888998753
No 447
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=89.10 E-value=3.6 Score=33.38 Aligned_cols=64 Identities=9% Similarity=-0.010 Sum_probs=43.7
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~ 230 (340)
+.+-|+|+|+.. .......+..+|.++++.+.+ ..++..+...++.+.... ...+.+|.|+.+-
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl 119 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 119 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhc
Confidence 667899998854 223345567799999998774 556777776666665432 2356788899874
No 448
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=89.08 E-value=1.7 Score=37.31 Aligned_cols=66 Identities=15% Similarity=-0.040 Sum_probs=42.9
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCCh-h-hHHHHHHHHHHHHhcC--CCceEEEEecccCCc
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDI-T-SLRDADRVTGLLECDG--IRDIKMVVNRVRTDM 232 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~-~-s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~~ 232 (340)
++..++|+++... .........++.++++..... . .........+.+.... ...+.++.|+.+-..
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 6789999988553 234445567888888877764 3 3444455555665544 246778889987654
No 449
>PRK10536 hypothetical protein; Provisional
Probab=89.06 E-value=1.1 Score=39.96 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=23.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEE
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAI 85 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la-~~g~~Vlli 85 (340)
+.+.-+.-|+|||++|..+|...- ...++.++|
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 444448889999999999998543 444555554
No 450
>PRK07773 replicative DNA helicase; Validated
Probab=89.02 E-value=0.58 Score=49.47 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=35.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRN 93 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~ 93 (340)
-+.+.++..|+|||++|.|+|...|.. |.+|+++-++.....
T Consensus 218 ~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~q 260 (886)
T PRK07773 218 QLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ 260 (886)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 466667999999999999999999854 899999999876433
No 451
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.02 E-value=0.69 Score=41.40 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
-|.+. +..|+|||++|..+|.. .|.++..+.++..
T Consensus 23 ~vLL~-G~~GtGKT~lA~~la~~---lg~~~~~i~~~~~ 57 (262)
T TIGR02640 23 PVHLR-GPAGTGKTTLAMHVARK---RDRPVMLINGDAE 57 (262)
T ss_pred eEEEE-cCCCCCHHHHHHHHHHH---hCCCEEEEeCCcc
Confidence 33344 78899999999999873 3889999999875
No 452
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=89.01 E-value=3.7 Score=33.46 Aligned_cols=65 Identities=14% Similarity=0.030 Sum_probs=44.9
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~ 231 (340)
+.+.|+|+++.. .......+..||.++++... +..++..+.+.++.+..... ..+.+|.|+.+-.
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred EEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 677899999854 23334556789999999875 46677777777776665322 3567888998754
No 453
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=89.01 E-value=0.68 Score=39.49 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=24.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
++|+++ +.-|+||||++..|+..+ |..| +|+|-
T Consensus 2 ~~i~it-G~~gsGKst~~~~l~~~~---g~~~--i~~D~ 34 (195)
T PRK14730 2 RRIGLT-GGIASGKSTVGNYLAQQK---GIPI--LDADI 34 (195)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhh---CCeE--eeCcH
Confidence 467787 678999999998777532 6665 57774
No 454
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=89.00 E-value=4.3 Score=41.83 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=28.2
Q ss_pred hHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623 32 SIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLA 76 (340)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la 76 (340)
.+.+.|+.... .++....+.|+ +.-|+||||++..||+.|-
T Consensus 23 ~Vv~~L~~aL~---~gRL~HAyLFt-GPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 23 HVVRALTHALD---GGRLHHAYLFT-GTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred HHHHHHHHHHh---cCCCCeEEEEE-CCCCCCHHHHHHHHHHHhc
Confidence 34555554432 34456666766 5569999999999999876
No 455
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=88.99 E-value=9 Score=35.38 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=29.2
Q ss_pred ChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623 29 SKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLA 76 (340)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la 76 (340)
+.......+..... .++.+..+.|. +..|+||+++|..+|.++-
T Consensus 8 W~~~~~~~l~~~~~---~~rl~HA~Lf~-Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 8 WQQRAYDQTVAALD---AGRLGHGLLIC-GPEGLGKRAVALALAEHVL 51 (319)
T ss_pred cHHHHHHHHHHHHH---cCCcceeEeeE-CCCCCCHHHHHHHHHHHHh
Confidence 33444444444321 34666778888 5668899999999998765
No 456
>PRK12338 hypothetical protein; Provisional
Probab=88.98 E-value=0.41 Score=44.02 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+.+.++.+|+||||+|..||..+ |.+. +++.|.
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l---~~~~-~~~tD~ 38 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTL---NIKH-LIETDF 38 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCeE-EccChH
Confidence 344555888999999999998876 4443 445554
No 457
>PRK13975 thymidylate kinase; Provisional
Probab=88.89 E-value=0.55 Score=39.75 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLA 76 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la 76 (340)
|++.|+|. +-.|+||||++..||..+.
T Consensus 1 m~~~I~ie-G~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 1 MNKFIVFE-GIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 34567766 6778999999999999885
No 458
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=88.83 E-value=1.8 Score=35.05 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=41.3
Q ss_pred CCCEEEEcCCCCCCH-------------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA-------------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~-------------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
..++.++|+|+.... .....+..+|.++++++...........+.+.+...+ ..+.+++|+++..
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~~~iiv~nK~Dl~ 126 (174)
T cd01895 49 GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEG-KALVIVVNKWDLV 126 (174)
T ss_pred CeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcC-CCEEEEEeccccC
Confidence 357889999984211 1123456799999999875543333445555555444 4677899998754
No 459
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=88.80 E-value=3.4 Score=33.84 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=45.8
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..||.++++.+... .++..+...+..+... ....+.+|.|+.+..
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 42 KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 4788999999854 2334556788999999988754 4566666666655432 224678999999864
No 460
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=88.75 E-value=0.55 Score=38.95 Aligned_cols=26 Identities=46% Similarity=0.742 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcE
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSV 82 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~V 82 (340)
.|+|+ +..|+||||++--|+ +.|+++
T Consensus 2 ~I~IT-GTPGvGKTT~~~~L~----~lg~~~ 27 (180)
T COG1936 2 LIAIT-GTPGVGKTTVCKLLR----ELGYKV 27 (180)
T ss_pred eEEEe-CCCCCchHHHHHHHH----HhCCce
Confidence 56777 778999999998777 446555
No 461
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=88.74 E-value=0.37 Score=43.49 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+|+++ +..|+||||++..|+..+...|.. ++.+|
T Consensus 1 iigI~-G~sGsGKSTl~~~L~~ll~~~~~~--vi~~D 34 (273)
T cd02026 1 IIGVA-GDSGCGKSTFLRRLTSLFGSDLVT--VICLD 34 (273)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHhhCCCceE--EEECc
Confidence 35666 778999999999999888665534 44455
No 462
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=88.74 E-value=0.56 Score=39.41 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 60 GGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 60 GGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
-|+||||.+..|+.+|...|.+ .++...+.
T Consensus 5 DGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~ 34 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEALKEKGYK-VIITFPPG 34 (186)
T ss_dssp TTSSHHHHHHHHHHHHHHTTEE-EEEEESST
T ss_pred CCCCHHHHHHHHHHHHHHcCCc-ccccCCCC
Confidence 5999999999999999999998 44455444
No 463
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=88.71 E-value=0.74 Score=40.80 Aligned_cols=40 Identities=30% Similarity=0.441 Sum_probs=31.6
Q ss_pred EEEEEEc-CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITS-GKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s-~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
|-|.|+| --.|.||-.+|++++..|..+|++|..+.+||.
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPY 42 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPY 42 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-S
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccc
Confidence 4455554 467999999999999999999999999999984
No 464
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=88.61 E-value=5.2 Score=32.29 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=42.7
Q ss_pred CCEEEEcCCCC--CCHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccC
Q 047623 167 PDFILIDCPAG--IDAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~--~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~ 230 (340)
+.+.|+|+++. ........+..+|.++++.... ..++..+....+.+... ....+.+|.|+.+.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl 118 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL 118 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 45678999984 3344445567899888877664 44677777766666543 22356788999875
No 465
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=88.60 E-value=4.4 Score=32.34 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=45.8
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCCc
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTDM 232 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~~ 232 (340)
+.+.++|+|+.. .......+..+|.++++...+ ..++..+..+...+... ....+.+|.|+.+...
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 778899999954 334455667899988888764 45666666666655542 2356789999998653
No 466
>PRK07429 phosphoribulokinase; Provisional
Probab=88.58 E-value=0.82 Score=42.36 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..-+|+|. +..|+||||++..|+..+...+ +.++.+|-
T Consensus 7 ~~~IIgI~-G~SGSGKSTla~~L~~ll~~~~--~~vi~~Dd 44 (327)
T PRK07429 7 RPVLLGVA-GDSGCGKTTFLRGLADLLGEEL--VTVICTDD 44 (327)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHhHhccCc--eEEEEecc
Confidence 34577777 7789999999999998886543 44455553
No 467
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=88.55 E-value=3.6 Score=35.43 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=45.4
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC-----CceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI-----RDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~-----~~~~vviN~~~~~ 231 (340)
.+.+.|+|+++.. .......+..+|.++++.+.+ ..++..+....+.+..... ..+.+|.|+.+-.
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 3678899999853 233344567899999998875 4577777777777765321 2467889998853
No 468
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=88.53 E-value=3.8 Score=33.84 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=44.1
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+++.. .......+..+|.++++... +..++..+..+.+.+.+. ....+.+|.|+.+-.
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 677899998854 23334556779988888776 456677777666666542 224678899998753
No 469
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.52 E-value=0.48 Score=38.84 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=22.7
Q ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 56 TSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 56 ~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+-.|+||||+|..|+..+ | ..++|.|.-
T Consensus 3 l~G~~GsGKSTla~~l~~~l---~--~~~v~~D~~ 32 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRL---G--AKFIEGDDL 32 (163)
T ss_pred EECCCCCCHHHHHHHHHHhc---C--CeEEeCccc
Confidence 34778999999999999876 3 445677754
No 470
>PRK01184 hypothetical protein; Provisional
Probab=88.50 E-value=0.67 Score=38.87 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
|++|.++ +..|+||||++. + +.+.|..+ +|+
T Consensus 1 ~~~i~l~-G~~GsGKsT~a~-~---~~~~g~~~--i~~ 31 (184)
T PRK01184 1 MKIIGVV-GMPGSGKGEFSK-I---AREMGIPV--VVM 31 (184)
T ss_pred CcEEEEE-CCCCCCHHHHHH-H---HHHcCCcE--EEh
Confidence 3566666 778899999764 3 44567666 454
No 471
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=88.36 E-value=2.6 Score=34.27 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=42.7
Q ss_pred CCEEEEcCCCCC---------CHHHHHHHhcCCeEEEEeCCChh--hHHHHHHHHHHHHhcC----CCceEEEEecccC
Q 047623 167 PDFILIDCPAGI---------DAGFITAITPANEAVLVTTPDIT--SLRDADRVTGLLECDG----IRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~---------~~~~~~~l~~ad~viiv~~~~~~--s~~~~~~~~~~l~~~~----~~~~~vviN~~~~ 230 (340)
..+.++|+|+.. .......+..+|.++++++.... +........+.+.... ...+.+|+|+.+-
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence 378899999942 11122334569999999988754 5666666666665432 2456789999985
No 472
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=88.27 E-value=0.92 Score=38.60 Aligned_cols=34 Identities=35% Similarity=0.403 Sum_probs=25.7
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
||.+|+++ +.-|+||||++..|+. .|. -++|+|.
T Consensus 1 ~~~~i~lt-G~~gsGKst~~~~l~~----~g~--~~i~~D~ 34 (194)
T PRK00081 1 MMLIIGLT-GGIGSGKSTVANLFAE----LGA--PVIDADA 34 (194)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEecH
Confidence 45788888 6778999999987765 465 4588885
No 473
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=87.99 E-value=5 Score=34.14 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=43.8
Q ss_pred CCEEEEcCCCCC------CH----HHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-----CCCceEEEEecccC
Q 047623 167 PDFILIDCPAGI------DA----GFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-----GIRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~------~~----~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~~vviN~~~~ 230 (340)
+.+.|+|+|+.. .. .....+..||.++++.+.. ..++..+....+.+... ....+.+|.|+.+-
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl 128 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQ 128 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccc
Confidence 778899998731 11 1223467899999999884 55677777666666542 22467899999886
Q ss_pred C
Q 047623 231 D 231 (340)
Q Consensus 231 ~ 231 (340)
.
T Consensus 129 ~ 129 (198)
T cd04142 129 Q 129 (198)
T ss_pred c
Confidence 4
No 474
>PRK13695 putative NTPase; Provisional
Probab=87.92 E-value=1.2 Score=37.07 Aligned_cols=30 Identities=40% Similarity=0.508 Sum_probs=24.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEE
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVV 83 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~Vl 83 (340)
|+++ +..|+||||++..++..+...|.++.
T Consensus 3 i~lt-G~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 3 IGIT-GPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4555 66899999999999988887788764
No 475
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=87.92 E-value=0.67 Score=38.86 Aligned_cols=31 Identities=42% Similarity=0.573 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+|+++ +..|+||||++.-|+. .|..| +|+|.
T Consensus 1 ii~it-G~~gsGKst~~~~l~~----~g~~~--i~~D~ 31 (179)
T cd02022 1 IIGLT-GGIGSGKSTVAKLLKE----LGIPV--IDADK 31 (179)
T ss_pred CEEEE-CCCCCCHHHHHHHHHH----CCCCE--EecCH
Confidence 35666 7889999999988776 57655 77774
No 476
>PRK03839 putative kinase; Provisional
Probab=87.87 E-value=0.67 Score=38.74 Aligned_cols=30 Identities=40% Similarity=0.617 Sum_probs=21.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
|.++ +-.|+||||++..||..+ |. -.+|+|
T Consensus 3 I~l~-G~pGsGKsT~~~~La~~~---~~--~~id~d 32 (180)
T PRK03839 3 IAIT-GTPGVGKTTVSKLLAEKL---GY--EYVDLT 32 (180)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence 4455 778999999998888876 33 335655
No 477
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=87.81 E-value=4.9 Score=32.53 Aligned_cols=65 Identities=17% Similarity=-0.006 Sum_probs=44.5
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~ 231 (340)
+.+.++|+|+... ......+..++.++++... +..+...+.+.++.+.+... ..+.+|.|+.+-.
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 6778999988542 2334456778978877766 46677777777777765432 3577889998853
No 478
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=87.77 E-value=1 Score=43.19 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=46.3
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhh-HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITS-LRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.++|+|+... ..+...+..+|.++++++.+... ...+.+.+..+...+.+.+.+++|+.+..
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 36789999998532 22344456689999999987543 44555666666666777788999999864
No 479
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.77 E-value=14 Score=36.39 Aligned_cols=29 Identities=34% Similarity=0.646 Sum_probs=22.2
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLA 76 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la 76 (340)
++-++-+.++ +.-|+||||+|.-+|..+-
T Consensus 32 ~ri~ha~Lf~-Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 32 NKIPQSILLV-GASGVGKTTCARIISLCLN 60 (491)
T ss_pred CCCCceEEEE-CCCCccHHHHHHHHHHHHc
Confidence 3445567776 6678899999999998765
No 480
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.75 E-value=7.7 Score=33.20 Aligned_cols=112 Identities=11% Similarity=0.001 Sum_probs=78.2
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcCC--CceEEEEecccCCcccccccccH
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDGI--RDIKMVVNRVRTDMIKGEDMMSV 241 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~~~~~~~~~~~ 241 (340)
.-.=|.|+++.- -..+.+....|+.+++|..- +..|..+....++.++++.- -...+|-|+++-+...
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R------- 133 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKR------- 133 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccc-------
Confidence 455788998854 44566777889988888766 56788888888888887543 3566788998754311
Q ss_pred HHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCC--HHHHHHHHHHHHHHhcccc
Q 047623 242 LDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPT--LAGLAFEQAAWRLVEQDSM 298 (340)
Q Consensus 242 ~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s--~~~~~~~~la~~i~~~~~~ 298 (340)
.||....-.-|...|.++++..++. ..-.+|.+||++|..+.+.
T Consensus 134 -------------~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 134 -------------QVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLED 179 (207)
T ss_pred -------------cccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence 3444443344555577777766554 4788999999999987655
No 481
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=87.72 E-value=4.5 Score=32.91 Aligned_cols=65 Identities=9% Similarity=0.005 Sum_probs=44.0
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
+.+.++|+++.. .......+..+|.++++.+.. ..++..+...++.+.... ...+.+|.|+.+-.
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 567899998843 223344567799888887753 566776777666665533 23578999998753
No 482
>PRK13948 shikimate kinase; Provisional
Probab=87.71 E-value=1.2 Score=37.64 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.|.++ +--|+||||++..||..| |.+ +||+|.
T Consensus 12 ~I~Li-G~~GsGKSTvg~~La~~l---g~~--~iD~D~ 43 (182)
T PRK13948 12 WVALA-GFMGTGKSRIGWELSRAL---MLH--FIDTDR 43 (182)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEECCH
Confidence 33343 677999999999888876 444 468883
No 483
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=87.67 E-value=0.62 Score=44.46 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
.-|.|. +..|.||||+|..||.+++.+|+=|=-++
T Consensus 264 eGILIA-G~PGaGKsTFaqAlAefy~~~GkiVKTmE 298 (604)
T COG1855 264 EGILIA-GAPGAGKSTFAQALAEFYASQGKIVKTME 298 (604)
T ss_pred cceEEe-cCCCCChhHHHHHHHHHHHhcCcEEeecc
Confidence 446665 77899999999999999999998554443
No 484
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=87.64 E-value=6.1 Score=31.93 Aligned_cols=66 Identities=12% Similarity=0.010 Sum_probs=43.6
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+++.. .......+..+|.++++...+ ..+...+....+.+... .-..+.+|.|+.+-.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 3677899999853 344455567799888887653 45566666666655432 123577999998853
No 485
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.51 E-value=1 Score=37.55 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~ 90 (340)
.+.++ +-.|+|||.+|..||..+- ....+.+.+|+...
T Consensus 5 ~~ll~-GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 5 NFLLA-GPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp EEEEE-SSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 44444 7789999999999999999 67788999998765
No 486
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=87.51 E-value=1.4 Score=41.59 Aligned_cols=68 Identities=25% Similarity=0.294 Sum_probs=48.4
Q ss_pred CCCCEEEEcCCCCCCHH--HHHHHhcCCeEEEEeCCChhhHH-------HHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 165 GSPDFILIDCPAGIDAG--FITAITPANEAVLVTTPDITSLR-------DADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 165 ~~~D~VIiD~~~~~~~~--~~~~l~~ad~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
+.|.+.|+|||+.-+.. +......||..|+|+..+....+ .+++.+-..+..|++.+.+.+|+.+.-.
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~ 159 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS 159 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc
Confidence 36899999999954332 23345789999999988777422 3344455555678899999999988654
No 487
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=87.46 E-value=2.1 Score=36.03 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=39.2
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.++|+|+... .........+|.+++++......-....+........+. .+.+++|+.+..
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~-~~iiv~NK~Dl~ 133 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCK-KLIVVLNKIDLI 133 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCC-CEEEEEECcccC
Confidence 58999999998632 112233456899999988764221222222333333343 577999999853
No 488
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=87.39 E-value=1.2 Score=38.34 Aligned_cols=33 Identities=33% Similarity=0.483 Sum_probs=24.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
...+|+++ +.-|+||||++.-|+. .|..| +|+|
T Consensus 4 ~~~~igit-G~igsGKSt~~~~l~~----~g~~v--~d~D 36 (208)
T PRK14731 4 LPFLVGVT-GGIGSGKSTVCRFLAE----MGCEL--FEAD 36 (208)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHH----CCCeE--Eecc
Confidence 34678887 7789999998876664 57655 7777
No 489
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=87.30 E-value=2.6 Score=40.21 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=64.7
Q ss_pred CCCEEEEcCCCC--CCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAG--IDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~--~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
++-+=|+|||+. .+..+...|.++|..++|++....--..+..+.+.++-.+.+ +..++|+.++.....-. -+.+
T Consensus 80 ~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~E--LLdE 156 (528)
T COG4108 80 DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLE--LLDE 156 (528)
T ss_pred CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc-eEEEeeccccccCChHH--HHHH
Confidence 355668899995 467788899999999999998777777788888888876665 55788999987543333 3778
Q ss_pred HHHHhCCcee
Q 047623 244 IQEMLGLALL 253 (340)
Q Consensus 244 i~~~~g~~v~ 253 (340)
+++.+++...
T Consensus 157 iE~~L~i~~~ 166 (528)
T COG4108 157 IEEELGIQCA 166 (528)
T ss_pred HHHHhCccee
Confidence 8888886543
No 490
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=87.30 E-value=0.54 Score=43.17 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=37.4
Q ss_pred CCEEEEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSG-KGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~-kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
...+|+|.|. -||+|||-++.-||..|.++|.++.++.=++.
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYg 88 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYG 88 (336)
T ss_pred CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcC
Confidence 3578888774 69999999999999999999999999988876
No 491
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=87.26 E-value=0.9 Score=37.81 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=24.7
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+..+..|+|||++|.+++.. .|.+++++....
T Consensus 3 li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~ 34 (169)
T cd00544 3 LVTGGARSGKSRFAERLAAE---LGGPVTYIATAE 34 (169)
T ss_pred EEECCCCCCHHHHHHHHHHh---cCCCeEEEEccC
Confidence 34477899999999999865 677898885543
No 492
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=87.25 E-value=0.79 Score=44.42 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+-+.++ +..|+|||+++..+|..+.+.|.+|+.+.++
T Consensus 142 npl~L~-G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 142 NPIYLF-GPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred ceEEEE-cCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 445566 5679999999999999999889999999875
No 493
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=87.22 E-value=1 Score=49.12 Aligned_cols=39 Identities=41% Similarity=0.389 Sum_probs=29.5
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
....++|+|+ +.||+||||+|..++..+...-.-.+.+|
T Consensus 204 ~~~~~vvgI~-G~gGiGKTTLA~~l~~~l~~~F~g~vfv~ 242 (1153)
T PLN03210 204 SEEVRMVGIW-GSSGIGKTTIARALFSRLSRQFQSSVFID 242 (1153)
T ss_pred cCceEEEEEE-cCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence 3456889988 88999999999999988876533334444
No 494
>PRK07560 elongation factor EF-2; Reviewed
Probab=87.20 E-value=1.1 Score=46.46 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=48.1
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++-+.+||||+..+ .....++..+|.+++|++....-......+.+.+...+.+ ..+++|+.+..
T Consensus 86 ~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~ 152 (731)
T PRK07560 86 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVK-PVLFINKVDRL 152 (731)
T ss_pred cEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCC-eEEEEECchhh
Confidence 47789999999654 3456678899999999987665455566677766555665 46889999864
No 495
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=87.17 E-value=0.73 Score=37.80 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=15.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHH
Q 047623 53 VVITSGKGGVGKTTTTANVGLS 74 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~ 74 (340)
|+|+ +.-|+||||++..|+..
T Consensus 2 I~i~-G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVIT-GGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE---TTSHHHHHHHHHHHH
T ss_pred EEEE-CCCCCCHHHHHHHHHHc
Confidence 5666 55678999999999976
No 496
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=87.12 E-value=7.5 Score=31.18 Aligned_cols=64 Identities=16% Similarity=0.012 Sum_probs=43.1
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~ 230 (340)
+.+.|+|+++.. .......+..+|.++++...+ ..+++.+....+.+.... ...+.+|.|+.+-
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 118 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDL 118 (163)
T ss_pred EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 566789999853 333344567799888887654 566777777776665431 2356688999875
No 497
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=87.07 E-value=1 Score=38.65 Aligned_cols=35 Identities=29% Similarity=0.237 Sum_probs=25.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+|+++ +.-|+||||++..|+.. .|.. ++|+|.-
T Consensus 6 ~~~IglT-G~iGsGKStv~~~l~~~---lg~~--vidaD~i 40 (204)
T PRK14733 6 TYPIGIT-GGIASGKSTATRILKEK---LNLN--VVCADTI 40 (204)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHHH---cCCe--EEeccHH
Confidence 4678888 66789999998777642 3766 5888854
No 498
>PRK14530 adenylate kinase; Provisional
Probab=87.02 E-value=0.75 Score=39.75 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
+.|.|. +-.|+||||++..||..+
T Consensus 4 ~~I~i~-G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLL-GAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 456666 678999999999998776
No 499
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=86.95 E-value=5.5 Score=32.06 Aligned_cols=66 Identities=14% Similarity=-0.051 Sum_probs=44.2
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..+...+..+++.+.... ...+.+|.|+.+-.
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 3678899999853 233345567899999888775 456666666666654322 23577888998754
No 500
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=86.93 E-value=5.4 Score=38.20 Aligned_cols=113 Identities=14% Similarity=0.119 Sum_probs=69.1
Q ss_pred HHHHHh-cCCeEEEEeCCC-------hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 182 FITAIT-PANEAVLVTTPD-------ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 182 ~~~~l~-~ad~viiv~~~~-------~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
+..++. ++|..++|++.+ ..-...-.++++.+.+.+. .+.+|+|..++....... -.+++.+.++.+++
T Consensus 137 T~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~k-PfiivlN~~dp~~~et~~--l~~~l~eky~vpvl 213 (492)
T TIGR02836 137 TRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNK-PFIILLNSTHPYHPETEA--LRQELEEKYDVPVL 213 (492)
T ss_pred HHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCC-CEEEEEECcCCCCchhHH--HHHHHHHHhCCceE
Confidence 567777 899988888543 3445555788888887665 466899999865322222 23467788898865
Q ss_pred E--EecCChH-HH---HHHhcCCceEee-----------CCCCHHHHHHHHHHHHHHhccc
Q 047623 254 G--VIPEDSE-VI---RSTNRGYPLVLN-----------KPPTLAGLAFEQAAWRLVEQDS 297 (340)
Q Consensus 254 ~--~Ip~d~~-~~---~a~~~g~~v~~~-----------~~~s~~~~~~~~la~~i~~~~~ 297 (340)
. +...... +. +.....=|+.+. .+.....+.+.+.+++.+....
T Consensus 214 ~v~c~~l~~~DI~~il~~vL~EFPv~Ei~~~~P~Wve~L~~~Hwlk~~~~~~i~~~~~~i~ 274 (492)
T TIGR02836 214 AMDVESMRESDILSVLEEVLYEFPILEINIDLPSWVEVLDENHWLKENFQSSVKETVKDVY 274 (492)
T ss_pred EEEHHHcCHHHHHHHHHHHHhcCCceEEEeeCchHHHhcCCCchHHHHHHHHHHHHHHhhh
Confidence 2 2222222 22 333333344433 4456778888888887777643
Done!