Query 047623
Match_columns 340
No_of_seqs 174 out of 2053
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 23:08:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q9l_A Septum site-determining 100.0 1.7E-37 5.8E-42 276.9 25.7 244 49-298 1-252 (260)
2 1hyq_A MIND, cell division inh 100.0 1.3E-37 4.4E-42 278.5 23.2 258 49-319 1-259 (263)
3 1g3q_A MIND ATPase, cell divis 100.0 7.9E-36 2.7E-40 262.6 24.3 235 49-295 1-236 (237)
4 3ea0_A ATPase, para family; al 100.0 4.3E-36 1.5E-40 265.5 19.4 236 48-294 2-244 (245)
5 3end_A Light-independent proto 100.0 7.8E-35 2.7E-39 266.4 24.2 265 35-317 26-305 (307)
6 1wcv_1 SOJ, segregation protei 100.0 4.3E-35 1.5E-39 261.4 15.4 238 47-298 3-248 (257)
7 2afh_E Nitrogenase iron protei 100.0 1.1E-33 3.8E-38 256.5 23.0 257 50-318 2-273 (289)
8 3fwy_A Light-independent proto 100.0 3.6E-33 1.2E-37 254.9 23.5 268 32-317 30-312 (314)
9 1cp2_A CP2, nitrogenase iron p 100.0 1.6E-33 5.6E-38 252.6 20.2 255 50-319 1-268 (269)
10 3k9g_A PF-32 protein; ssgcid, 100.0 7.9E-33 2.7E-37 248.0 20.6 234 46-295 23-266 (267)
11 4dzz_A Plasmid partitioning pr 100.0 5.8E-32 2E-36 232.6 20.9 200 50-296 1-205 (206)
12 3kjh_A CO dehydrogenase/acetyl 100.0 3.2E-32 1.1E-36 241.3 16.9 230 52-296 2-253 (254)
13 3la6_A Tyrosine-protein kinase 100.0 6.1E-32 2.1E-36 244.0 15.5 221 5-232 28-268 (286)
14 3bfv_A CAPA1, CAPB2, membrane 100.0 1E-31 3.5E-36 241.0 14.9 222 4-232 28-258 (271)
15 2ph1_A Nucleotide-binding prot 100.0 1.7E-29 5.9E-34 225.8 22.5 219 48-275 16-245 (262)
16 2oze_A ORF delta'; para, walke 100.0 2.2E-30 7.6E-35 235.7 16.5 237 49-297 33-291 (298)
17 3pg5_A Uncharacterized protein 100.0 2.3E-30 7.9E-35 241.6 16.5 247 50-299 1-352 (361)
18 2xj4_A MIPZ; replication, cell 100.0 4.1E-31 1.4E-35 239.2 10.9 229 49-296 3-268 (286)
19 3cwq_A Para family chromosome 100.0 7.7E-30 2.6E-34 220.4 16.8 196 51-298 1-201 (209)
20 3cio_A ETK, tyrosine-protein k 100.0 3.4E-30 1.2E-34 234.3 14.7 220 6-232 36-280 (299)
21 3ez2_A Plasmid partition prote 100.0 5.9E-29 2E-33 235.4 18.5 244 46-296 104-392 (398)
22 3ez9_A Para; DNA binding, wing 100.0 2.6E-29 8.8E-34 238.2 11.3 247 46-297 107-396 (403)
23 3fkq_A NTRC-like two-domain pr 99.9 3E-26 1E-30 214.9 12.6 207 45-262 138-353 (373)
24 2woj_A ATPase GET3; tail-ancho 99.9 1.9E-23 6.5E-28 193.9 5.4 239 49-296 16-338 (354)
25 3ug7_A Arsenical pump-driving 99.9 4.3E-23 1.5E-27 191.4 5.7 232 46-297 21-337 (349)
26 3zq6_A Putative arsenical pump 99.9 1.5E-21 5E-26 179.5 14.4 229 48-296 11-321 (324)
27 1byi_A Dethiobiotin synthase; 99.8 3.8E-20 1.3E-24 160.9 15.5 197 50-261 1-208 (224)
28 2woo_A ATPase GET3; tail-ancho 99.8 6.1E-20 2.1E-24 168.9 11.6 179 48-231 16-264 (329)
29 3iqw_A Tail-anchored protein t 99.8 2.2E-18 7.5E-23 158.3 19.3 170 50-229 15-262 (334)
30 3io3_A DEHA2D07832P; chaperone 99.8 8.1E-19 2.8E-23 162.0 14.6 180 51-232 18-274 (348)
31 1ihu_A Arsenical pump-driving 99.7 1.9E-18 6.6E-23 171.1 7.7 207 48-260 324-569 (589)
32 1ihu_A Arsenical pump-driving 99.7 1.8E-17 6.2E-22 164.1 12.0 177 51-232 8-241 (589)
33 3igf_A ALL4481 protein; two-do 99.7 1.2E-16 4E-21 148.5 9.4 49 51-101 2-50 (374)
34 3of5_A Dethiobiotin synthetase 99.6 1.7E-15 5.7E-20 131.9 9.6 197 48-257 2-206 (228)
35 2xxa_A Signal recognition part 99.6 1.9E-14 6.4E-19 136.5 16.8 164 48-253 98-271 (433)
36 1zu4_A FTSY; GTPase, signal re 99.5 4.1E-13 1.4E-17 122.5 19.9 170 47-253 102-285 (320)
37 3fgn_A Dethiobiotin synthetase 99.5 4.1E-13 1.4E-17 118.1 17.6 194 47-261 23-226 (251)
38 1j8m_F SRP54, signal recogniti 99.5 2.7E-13 9.3E-18 122.5 16.6 163 50-254 98-271 (297)
39 3qxc_A Dethiobiotin synthetase 99.5 1.4E-13 4.6E-18 120.5 11.0 214 40-269 11-241 (242)
40 1ls1_A Signal recognition part 99.5 1.3E-12 4.6E-17 117.9 15.7 163 49-253 97-268 (295)
41 1yrb_A ATP(GTP)binding protein 99.4 2.5E-13 8.5E-18 120.4 10.3 46 48-94 11-56 (262)
42 2ffh_A Protein (FFH); SRP54, s 99.4 1.9E-12 6.6E-17 121.9 14.9 163 49-253 97-268 (425)
43 3dm5_A SRP54, signal recogniti 99.4 6.8E-12 2.3E-16 118.4 18.4 163 49-253 99-270 (443)
44 2v3c_C SRP54, signal recogniti 99.4 2.3E-11 8E-16 115.2 18.6 163 48-253 97-269 (432)
45 2j37_W Signal recognition part 99.3 2.6E-11 9.1E-16 116.6 15.8 164 48-253 99-271 (504)
46 1vma_A Cell division protein F 99.2 6.5E-10 2.2E-14 100.6 19.3 167 47-254 101-281 (306)
47 3kl4_A SRP54, signal recogniti 99.2 2.6E-10 9E-15 107.6 15.9 165 48-253 95-269 (433)
48 2px0_A Flagellar biosynthesis 99.2 4.7E-10 1.6E-14 101.2 14.5 159 48-253 103-270 (296)
49 3p32_A Probable GTPase RV1496/ 99.1 6.1E-10 2.1E-14 103.2 11.7 155 47-231 76-230 (355)
50 2r8r_A Sensor protein; KDPD, P 98.9 7.6E-09 2.6E-13 88.7 10.9 46 49-95 4-49 (228)
51 2obn_A Hypothetical protein; s 98.6 5.6E-07 1.9E-11 82.0 13.7 166 49-259 151-338 (349)
52 4a0g_A Adenosylmethionine-8-am 98.6 5.5E-08 1.9E-12 99.4 7.6 88 166-261 201-299 (831)
53 2p67_A LAO/AO transport system 98.6 6.2E-07 2.1E-11 82.4 13.1 154 47-231 53-207 (341)
54 3e70_C DPA, signal recognition 98.2 2.1E-05 7.2E-10 71.6 14.6 165 48-253 127-299 (328)
55 2yhs_A FTSY, cell division pro 98.2 1.8E-05 6E-10 75.5 14.1 168 46-254 289-470 (503)
56 3pzx_A Formate--tetrahydrofola 98.1 4E-06 1.4E-10 78.5 6.4 54 47-103 54-110 (557)
57 1rj9_A FTSY, signal recognitio 98.0 0.00013 4.3E-09 65.7 13.6 41 49-90 101-141 (304)
58 2rdo_7 EF-G, elongation factor 97.7 0.0002 6.7E-09 71.9 11.5 84 166-252 81-166 (704)
59 2www_A Methylmalonic aciduria 97.7 0.00048 1.6E-08 63.2 13.1 153 48-231 72-225 (349)
60 2h5e_A Peptide chain release f 97.6 0.00021 7.1E-09 69.3 9.8 85 166-253 81-167 (529)
61 2og2_A Putative signal recogni 97.6 0.0041 1.4E-07 57.1 17.4 43 47-90 154-196 (359)
62 3b9q_A Chloroplast SRP recepto 97.4 0.0056 1.9E-07 54.8 16.1 43 47-90 97-139 (302)
63 1xjc_A MOBB protein homolog; s 97.4 0.00024 8.1E-09 58.1 6.1 41 49-90 3-43 (169)
64 1u94_A RECA protein, recombina 97.4 0.0012 4.1E-08 60.7 11.3 41 49-90 62-102 (356)
65 2cvh_A DNA repair and recombin 97.2 0.0007 2.4E-08 57.2 7.4 38 49-90 19-56 (220)
66 3hr8_A Protein RECA; alpha and 97.2 0.0077 2.6E-07 55.2 14.5 42 48-90 59-100 (356)
67 3iev_A GTP-binding protein ERA 97.2 0.0019 6.6E-08 58.0 10.1 83 166-249 58-153 (308)
68 3clv_A RAB5 protein, putative; 97.2 0.0059 2E-07 50.3 12.5 63 167-229 93-158 (208)
69 1xp8_A RECA protein, recombina 97.2 0.0029 1E-07 58.3 11.4 41 49-90 73-113 (366)
70 2qm8_A GTPase/ATPase; G protei 97.1 0.0058 2E-07 55.6 13.0 127 47-199 52-179 (337)
71 2c78_A Elongation factor TU-A; 97.1 0.003 1E-07 59.0 11.3 66 166-231 74-141 (405)
72 2xex_A Elongation factor G; GT 96.8 0.009 3.1E-07 59.8 12.5 83 166-251 74-158 (693)
73 3con_A GTPase NRAS; structural 96.8 0.015 5.1E-07 47.5 12.0 66 166-231 68-139 (190)
74 2yvu_A Probable adenylyl-sulfa 96.8 0.0021 7E-08 53.0 6.2 41 48-89 11-51 (186)
75 2a9k_A RAS-related protein RAL 96.8 0.018 6.1E-07 46.6 12.0 65 167-231 66-136 (187)
76 2elf_A Protein translation elo 96.7 0.0068 2.3E-07 55.9 10.0 64 166-230 59-125 (370)
77 2erx_A GTP-binding protein DI- 96.7 0.018 6E-07 45.9 11.4 65 167-231 51-122 (172)
78 1dar_A EF-G, elongation factor 96.7 0.011 3.9E-07 59.0 12.1 83 166-251 76-160 (691)
79 1z2a_A RAS-related protein RAB 96.7 0.008 2.7E-07 47.8 9.2 66 166-231 53-122 (168)
80 4fn5_A EF-G 1, elongation fact 96.7 0.019 6.4E-07 57.6 13.6 85 166-253 84-170 (709)
81 2zr9_A Protein RECA, recombina 96.7 0.0095 3.3E-07 54.5 10.4 41 49-90 60-100 (349)
82 1u8z_A RAS-related protein RAL 96.7 0.036 1.2E-06 43.8 12.8 65 167-231 52-122 (168)
83 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0023 8E-08 55.9 5.6 39 50-89 4-42 (260)
84 2g0t_A Conserved hypothetical 96.6 0.0089 3E-07 54.4 9.1 136 49-227 168-323 (350)
85 1np6_A Molybdopterin-guanine d 96.5 0.0044 1.5E-07 50.8 6.3 42 48-90 4-45 (174)
86 2bov_A RAla, RAS-related prote 96.5 0.073 2.5E-06 43.8 14.1 65 167-231 62-132 (206)
87 1d2e_A Elongation factor TU (E 96.5 0.0058 2E-07 56.9 7.8 66 166-231 65-132 (397)
88 3io5_A Recombination and repai 96.5 0.013 4.5E-07 52.6 9.6 38 52-90 30-69 (333)
89 2b8t_A Thymidine kinase; deoxy 96.4 0.011 3.7E-07 50.5 8.5 38 50-88 12-49 (223)
90 3oes_A GTPase rhebl1; small GT 96.4 0.028 9.5E-07 46.5 10.7 66 166-231 71-142 (201)
91 3t5g_A GTP-binding protein RHE 96.2 0.027 9.3E-07 45.5 9.6 65 167-231 54-124 (181)
92 3iby_A Ferrous iron transport 96.2 0.032 1.1E-06 48.5 10.3 87 167-257 48-148 (256)
93 1wf3_A GTP-binding protein; GT 96.1 0.02 6.8E-07 51.2 8.6 66 166-231 54-130 (301)
94 1rz3_A Hypothetical protein rb 96.0 0.0093 3.2E-07 49.8 5.9 42 48-90 20-61 (201)
95 2dyk_A GTP-binding protein; GT 96.0 0.02 6.7E-07 45.1 7.3 65 167-232 49-122 (161)
96 1nks_A Adenylate kinase; therm 95.9 0.0076 2.6E-07 49.5 4.8 38 50-88 1-38 (194)
97 1v5w_A DMC1, meiotic recombina 95.9 0.015 5E-07 53.1 7.1 41 49-90 121-167 (343)
98 1uj2_A Uridine-cytidine kinase 95.8 0.0074 2.5E-07 52.3 4.6 44 46-90 18-66 (252)
99 3vqt_A RF-3, peptide chain rel 95.8 0.023 7.9E-07 55.2 8.5 85 166-253 99-185 (548)
100 2z43_A DNA repair and recombin 95.8 0.011 3.6E-07 53.5 5.7 40 50-90 107-152 (324)
101 2gf0_A GTP-binding protein DI- 95.8 0.1 3.5E-06 42.6 11.3 66 166-231 55-127 (199)
102 2f1r_A Molybdopterin-guanine d 95.7 0.0087 3E-07 48.9 4.4 41 49-90 1-41 (171)
103 1g5t_A COB(I)alamin adenosyltr 95.7 0.014 4.9E-07 48.5 5.7 40 48-89 27-66 (196)
104 3lxx_A GTPase IMAP family memb 95.7 0.075 2.6E-06 45.3 10.6 64 167-230 78-157 (239)
105 3bh0_A DNAB-like replicative h 95.7 0.012 4.3E-07 52.8 5.7 38 53-90 70-107 (315)
106 2dr3_A UPF0273 protein PH0284; 95.7 0.013 4.4E-07 50.1 5.6 41 49-90 22-62 (247)
107 2dy1_A Elongation factor G; tr 95.7 0.19 6.5E-06 49.9 14.6 80 166-249 73-154 (665)
108 1a7j_A Phosphoribulokinase; tr 95.6 0.0074 2.5E-07 53.7 3.9 41 50-91 5-45 (290)
109 2pez_A Bifunctional 3'-phospho 95.6 0.017 5.7E-07 47.1 5.8 40 49-89 4-43 (179)
110 2wsm_A Hydrogenase expression/ 95.6 0.014 4.7E-07 49.2 5.3 40 49-90 29-68 (221)
111 2ywe_A GTP-binding protein LEP 95.6 0.062 2.1E-06 52.7 10.5 66 166-232 72-139 (600)
112 3uie_A Adenylyl-sulfate kinase 95.5 0.021 7.2E-07 47.5 6.0 41 48-89 23-63 (200)
113 4a1f_A DNAB helicase, replicat 95.4 0.017 5.7E-07 52.5 5.5 38 53-90 48-85 (338)
114 4dcu_A GTP-binding protein ENG 95.4 0.022 7.5E-07 54.0 6.4 65 166-231 70-144 (456)
115 3ihw_A Centg3; RAS, centaurin, 95.4 0.16 5.6E-06 41.2 11.1 61 167-230 67-131 (184)
116 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.019 6.4E-07 48.5 5.4 41 49-90 22-62 (235)
117 3bgw_A DNAB-like replicative h 95.4 0.015 5.2E-07 54.9 5.2 39 53-91 199-237 (444)
118 1vco_A CTP synthetase; tetrame 95.3 0.022 7.4E-07 55.0 5.9 42 48-89 10-52 (550)
119 1ega_A Protein (GTP-binding pr 95.1 0.03 1E-06 50.0 6.1 64 167-232 56-130 (301)
120 2j69_A Bacterial dynamin-like 95.1 0.12 4.2E-06 51.5 10.9 64 167-231 174-243 (695)
121 2hf9_A Probable hydrogenase ni 95.0 0.027 9.2E-07 47.5 5.3 40 49-90 37-76 (226)
122 1m7g_A Adenylylsulfate kinase; 95.0 0.024 8.3E-07 47.5 4.9 40 48-88 23-63 (211)
123 1s1m_A CTP synthase; CTP synth 95.0 0.031 1E-06 53.9 5.9 40 50-89 3-43 (545)
124 2ce2_X GTPase HRAS; signaling 94.9 0.19 6.4E-06 39.2 9.8 66 166-231 50-121 (166)
125 2ged_A SR-beta, signal recogni 94.9 0.23 7.7E-06 40.3 10.4 66 166-231 90-169 (193)
126 2zts_A Putative uncharacterize 94.8 0.035 1.2E-06 47.4 5.4 38 53-90 32-70 (251)
127 1mky_A Probable GTP-binding pr 94.6 0.12 4.1E-06 48.6 9.2 63 167-230 49-122 (439)
128 3ec2_A DNA replication protein 94.6 0.029 1E-06 45.6 4.2 37 50-87 38-75 (180)
129 2hjg_A GTP-binding protein ENG 94.5 0.052 1.8E-06 51.1 6.4 64 167-231 51-124 (436)
130 1kht_A Adenylate kinase; phosp 94.5 0.025 8.6E-07 46.2 3.6 37 51-88 4-40 (192)
131 2w58_A DNAI, primosome compone 94.5 0.04 1.4E-06 45.6 4.9 37 51-88 55-91 (202)
132 1nrj_B SR-beta, signal recogni 94.5 0.082 2.8E-06 44.1 6.9 66 166-231 54-133 (218)
133 3pqc_A Probable GTP-binding pr 94.5 0.3 1E-05 39.4 10.3 64 167-231 68-146 (195)
134 2pbr_A DTMP kinase, thymidylat 94.5 0.057 2E-06 44.1 5.8 34 52-86 2-35 (195)
135 3cmu_A Protein RECA, recombina 94.4 0.11 3.8E-06 57.4 9.3 40 50-90 383-422 (2050)
136 1cr0_A DNA primase/helicase; R 94.4 0.054 1.8E-06 47.9 5.9 42 48-90 33-75 (296)
137 2q6t_A DNAB replication FORK h 94.4 0.045 1.5E-06 51.6 5.6 38 53-90 202-240 (444)
138 2gks_A Bifunctional SAT/APS ki 94.4 0.04 1.4E-06 53.5 5.3 41 48-89 370-410 (546)
139 2r6a_A DNAB helicase, replicat 94.3 0.055 1.9E-06 51.2 6.0 40 50-90 203-243 (454)
140 3tr5_A RF-3, peptide chain rel 94.3 0.14 4.7E-06 49.5 8.8 85 166-253 81-167 (528)
141 3cmw_A Protein RECA, recombina 94.3 0.21 7.3E-06 54.4 11.0 41 49-90 382-422 (1706)
142 1nn5_A Similar to deoxythymidy 94.3 0.063 2.2E-06 44.7 5.7 36 50-86 9-44 (215)
143 3bos_A Putative DNA replicatio 94.3 0.07 2.4E-06 45.0 6.1 39 50-89 52-90 (242)
144 2efe_B Small GTP-binding prote 94.2 0.18 6.3E-06 40.3 8.3 66 166-231 60-130 (181)
145 2hxs_A RAB-26, RAS-related pro 94.2 0.23 7.8E-06 39.5 8.8 65 167-231 56-128 (178)
146 1q57_A DNA primase/helicase; d 94.2 0.031 1.1E-06 53.6 4.0 38 53-90 244-282 (503)
147 2z0h_A DTMP kinase, thymidylat 94.2 0.072 2.5E-06 43.7 5.7 35 52-87 2-36 (197)
148 3c8u_A Fructokinase; YP_612366 94.1 0.092 3.2E-06 43.8 6.3 43 47-90 19-61 (208)
149 2wjg_A FEOB, ferrous iron tran 94.0 1.6 5.3E-05 34.9 13.6 61 167-230 54-124 (188)
150 1xx6_A Thymidine kinase; NESG, 94.0 0.12 4.1E-06 42.8 6.7 38 48-86 6-43 (191)
151 3avx_A Elongation factor TS, e 93.9 0.096 3.3E-06 54.9 7.2 66 166-231 358-425 (1289)
152 2wwf_A Thymidilate kinase, put 93.9 0.096 3.3E-06 43.5 6.1 37 49-86 9-45 (212)
153 3t61_A Gluconokinase; PSI-biol 93.9 0.042 1.4E-06 45.6 3.7 36 48-89 16-51 (202)
154 2gf9_A RAS-related protein RAB 93.8 0.14 4.7E-06 41.6 6.8 66 166-231 70-140 (189)
155 2kjq_A DNAA-related protein; s 93.8 0.071 2.4E-06 42.2 4.8 39 49-88 35-73 (149)
156 2c5m_A CTP synthase; cytidine 93.8 0.071 2.4E-06 45.7 5.0 43 48-90 21-64 (294)
157 1qhx_A CPT, protein (chloramph 93.8 0.044 1.5E-06 44.3 3.6 34 51-88 4-37 (178)
158 1z0f_A RAB14, member RAS oncog 93.7 0.36 1.2E-05 38.2 9.2 66 166-231 63-133 (179)
159 2fg5_A RAB-22B, RAS-related pr 93.7 0.15 5.2E-06 41.5 6.9 66 166-231 71-141 (192)
160 3trf_A Shikimate kinase, SK; a 93.7 0.039 1.3E-06 44.9 3.2 34 49-88 4-37 (185)
161 3lxw_A GTPase IMAP family memb 93.7 0.49 1.7E-05 40.5 10.4 65 166-231 69-152 (247)
162 1x6v_B Bifunctional 3'-phospho 93.7 0.079 2.7E-06 52.1 5.8 40 49-89 51-90 (630)
163 3j2k_7 ERF3, eukaryotic polype 93.6 0.1 3.6E-06 49.1 6.5 65 166-230 94-167 (439)
164 2xtp_A GTPase IMAP family memb 93.6 0.09 3.1E-06 45.4 5.6 22 50-72 22-43 (260)
165 3do6_A Formate--tetrahydrofola 93.5 0.11 3.9E-06 48.6 6.2 52 47-101 40-94 (543)
166 3tkl_A RAS-related protein RAB 93.5 0.29 9.9E-06 39.7 8.3 112 167-298 65-183 (196)
167 1m8p_A Sulfate adenylyltransfe 93.5 0.085 2.9E-06 51.4 5.6 42 47-89 393-435 (573)
168 1r2q_A RAS-related protein RAB 93.4 0.28 9.7E-06 38.5 7.9 66 166-231 54-124 (170)
169 3dz8_A RAS-related protein RAB 93.4 0.14 4.9E-06 41.6 6.2 66 166-231 71-141 (191)
170 1qf9_A UMP/CMP kinase, protein 93.4 0.075 2.6E-06 43.3 4.5 36 47-88 3-38 (194)
171 2qu8_A Putative nucleolar GTP- 93.4 1.4 4.7E-05 36.9 12.6 65 167-231 76-155 (228)
172 3j25_A Tetracycline resistance 93.4 0.043 1.5E-06 54.3 3.4 84 166-252 66-151 (638)
173 1jbk_A CLPB protein; beta barr 93.3 0.21 7.2E-06 40.1 7.1 36 51-87 44-86 (195)
174 3tqc_A Pantothenate kinase; bi 93.3 0.12 4.2E-06 46.4 6.0 42 48-90 90-133 (321)
175 1zo1_I IF2, translation initia 93.2 0.075 2.6E-06 50.9 4.7 64 167-231 51-116 (501)
176 3bc1_A RAS-related protein RAB 93.2 0.23 7.8E-06 40.0 7.1 66 166-231 69-140 (195)
177 3ld9_A DTMP kinase, thymidylat 93.2 0.11 3.7E-06 44.2 5.2 46 44-90 15-61 (223)
178 1kao_A RAP2A; GTP-binding prot 93.1 0.64 2.2E-05 36.2 9.6 65 167-231 51-121 (167)
179 2orw_A Thymidine kinase; TMTK, 93.1 0.089 3.1E-06 43.2 4.5 37 51-88 4-40 (184)
180 1h65_A Chloroplast outer envel 93.1 0.13 4.4E-06 44.8 5.7 66 166-231 86-167 (270)
181 3cmu_A Protein RECA, recombina 93.0 0.38 1.3E-05 53.3 10.3 41 49-90 1426-1466(2050)
182 1odf_A YGR205W, hypothetical 3 93.0 0.084 2.9E-06 46.8 4.5 42 48-90 29-73 (290)
183 1sq5_A Pantothenate kinase; P- 93.0 0.11 3.9E-06 46.3 5.4 42 48-90 78-121 (308)
184 1zun_B Sulfate adenylate trans 93.0 0.23 7.9E-06 46.6 7.7 66 166-231 103-170 (434)
185 4dcu_A GTP-binding protein ENG 92.9 0.59 2E-05 44.0 10.5 64 167-231 243-319 (456)
186 3asz_A Uridine kinase; cytidin 92.9 0.11 3.6E-06 43.3 4.8 39 48-90 4-42 (211)
187 1e6c_A Shikimate kinase; phosp 92.7 0.074 2.5E-06 42.6 3.4 34 49-88 1-34 (173)
188 1nlf_A Regulatory protein REPA 92.7 0.12 4E-06 45.3 4.9 40 49-89 29-78 (279)
189 2qgz_A Helicase loader, putati 92.7 0.13 4.4E-06 45.9 5.2 38 50-88 152-190 (308)
190 3t1o_A Gliding protein MGLA; G 92.6 0.63 2.1E-05 37.5 9.0 66 166-231 73-148 (198)
191 3cmw_A Protein RECA, recombina 92.5 0.65 2.2E-05 50.7 11.1 42 48-90 1429-1470(1706)
192 2plr_A DTMP kinase, probable t 92.5 0.15 5.3E-06 42.1 5.2 34 51-86 5-38 (213)
193 2j0v_A RAC-like GTP-binding pr 92.5 0.43 1.5E-05 39.4 8.0 65 166-230 56-125 (212)
194 1n0w_A DNA repair protein RAD5 92.5 0.099 3.4E-06 44.3 4.1 42 48-90 22-69 (243)
195 3sjy_A Translation initiation 92.4 0.22 7.4E-06 46.3 6.6 65 167-231 75-142 (403)
196 2v54_A DTMP kinase, thymidylat 92.4 0.11 3.6E-06 42.9 4.0 35 50-87 4-38 (204)
197 1knq_A Gluconate kinase; ALFA/ 92.4 0.19 6.6E-06 40.3 5.6 36 48-89 6-41 (175)
198 1z0j_A RAB-22, RAS-related pro 92.4 0.45 1.6E-05 37.3 7.7 65 167-231 55-124 (170)
199 1zbd_A Rabphilin-3A; G protein 92.4 0.37 1.3E-05 39.4 7.4 65 167-231 57-126 (203)
200 1f60_A Elongation factor EEF1A 92.4 0.23 7.9E-06 47.0 6.8 66 166-231 84-158 (458)
201 2qt1_A Nicotinamide riboside k 92.2 0.1 3.6E-06 43.3 3.8 40 46-90 17-56 (207)
202 2atv_A RERG, RAS-like estrogen 92.2 0.75 2.6E-05 37.3 9.0 66 166-231 75-145 (196)
203 3d3q_A TRNA delta(2)-isopenten 92.2 0.15 5.1E-06 46.2 4.9 35 50-90 7-41 (340)
204 2oil_A CATX-8, RAS-related pro 92.2 0.73 2.5E-05 37.2 8.9 66 166-231 73-143 (193)
205 2a5j_A RAS-related protein RAB 92.1 0.47 1.6E-05 38.4 7.7 65 167-231 70-139 (191)
206 2bcg_Y Protein YP2, GTP-bindin 92.1 0.4 1.4E-05 39.3 7.3 66 166-231 56-126 (206)
207 2g6b_A RAS-related protein RAB 92.1 0.45 1.5E-05 37.8 7.4 65 167-231 60-129 (180)
208 1gtv_A TMK, thymidylate kinase 92.0 0.05 1.7E-06 45.3 1.6 35 52-87 2-36 (214)
209 3mca_A HBS1, elongation factor 92.0 0.026 8.8E-07 55.4 -0.3 66 166-231 254-328 (592)
210 1g16_A RAS-related protein SEC 92.0 0.27 9.3E-06 38.6 6.0 64 167-230 52-120 (170)
211 2hup_A RAS-related protein RAB 92.0 0.57 2E-05 38.4 8.2 65 167-231 78-147 (201)
212 2e87_A Hypothetical protein PH 92.0 1.6 5.3E-05 39.6 11.8 65 167-231 214-293 (357)
213 4eun_A Thermoresistant glucoki 92.0 0.16 5.6E-06 41.9 4.8 36 48-89 27-62 (200)
214 3vaa_A Shikimate kinase, SK; s 92.0 0.1 3.6E-06 43.1 3.5 34 49-88 24-57 (199)
215 3def_A T7I23.11 protein; chlor 92.0 0.13 4.5E-06 44.6 4.3 65 166-230 83-163 (262)
216 2y8e_A RAB-protein 6, GH09086P 92.0 0.46 1.6E-05 37.6 7.4 65 167-231 63-132 (179)
217 2axn_A 6-phosphofructo-2-kinas 92.0 0.17 5.8E-06 48.7 5.4 39 51-89 35-73 (520)
218 4edh_A DTMP kinase, thymidylat 91.9 0.21 7.2E-06 42.0 5.4 36 50-86 6-41 (213)
219 2qby_A CDC6 homolog 1, cell di 91.9 0.23 7.8E-06 45.1 6.1 42 47-89 42-86 (386)
220 3nva_A CTP synthase; rossman f 91.9 0.25 8.5E-06 47.1 6.2 41 50-90 3-44 (535)
221 3cph_A RAS-related protein SEC 91.9 0.43 1.5E-05 39.2 7.2 64 167-230 69-137 (213)
222 4hlc_A DTMP kinase, thymidylat 91.9 0.19 6.6E-06 42.0 5.0 36 49-86 1-36 (205)
223 1g8f_A Sulfate adenylyltransfe 91.8 0.17 5.8E-06 48.5 5.1 41 48-89 393-435 (511)
224 1jny_A EF-1-alpha, elongation 91.8 0.26 8.8E-06 46.2 6.4 66 166-231 83-157 (435)
225 2fu5_C RAS-related protein RAB 91.8 0.3 1E-05 39.2 6.1 65 167-231 57-126 (183)
226 1ukz_A Uridylate kinase; trans 91.8 0.16 5.5E-06 41.9 4.4 37 46-88 11-47 (203)
227 1ek0_A Protein (GTP-binding pr 91.8 0.61 2.1E-05 36.5 7.8 65 167-231 52-121 (170)
228 3upu_A ATP-dependent DNA helic 91.7 0.17 5.9E-06 47.8 5.1 67 17-86 11-81 (459)
229 3c5c_A RAS-like protein 12; GD 91.7 0.67 2.3E-05 37.4 8.2 65 167-231 69-140 (187)
230 1z08_A RAS-related protein RAB 91.7 0.33 1.1E-05 38.2 6.1 66 166-231 54-124 (170)
231 2p65_A Hypothetical protein PF 91.7 0.18 6.3E-06 40.4 4.6 26 51-77 44-69 (187)
232 1y63_A LMAJ004144AAA protein; 91.7 0.17 5.9E-06 41.2 4.4 36 48-88 8-43 (184)
233 1via_A Shikimate kinase; struc 91.6 0.11 3.8E-06 41.9 3.2 33 50-88 4-36 (175)
234 1ly1_A Polynucleotide kinase; 91.6 0.17 5.6E-06 40.7 4.3 34 50-88 2-35 (181)
235 1z06_A RAS-related protein RAB 91.6 0.73 2.5E-05 37.1 8.3 65 167-231 69-140 (189)
236 2rhm_A Putative kinase; P-loop 91.6 0.15 5E-06 41.6 4.0 26 49-75 4-29 (193)
237 2ze6_A Isopentenyl transferase 91.6 0.17 5.8E-06 43.7 4.5 33 51-89 2-34 (253)
238 2nzj_A GTP-binding protein REM 91.5 1.2 3.9E-05 35.1 9.3 65 167-231 52-124 (175)
239 3kb2_A SPBC2 prophage-derived 91.5 0.15 5E-06 40.7 3.8 33 51-89 2-34 (173)
240 2if2_A Dephospho-COA kinase; a 91.5 0.096 3.3E-06 43.3 2.7 32 51-89 2-33 (204)
241 1c1y_A RAS-related protein RAP 91.4 0.95 3.3E-05 35.2 8.6 66 166-231 50-121 (167)
242 2iyv_A Shikimate kinase, SK; t 91.4 0.12 4E-06 42.0 3.1 34 50-89 2-35 (184)
243 2j9r_A Thymidine kinase; TK1, 91.4 0.44 1.5E-05 40.1 6.7 39 48-87 26-64 (214)
244 3p26_A Elongation factor 1 alp 91.3 0.31 1.1E-05 46.4 6.4 66 166-231 110-184 (483)
245 3ake_A Cytidylate kinase; CMP 91.3 0.11 3.9E-06 42.8 3.0 33 51-89 3-35 (208)
246 3tw8_B RAS-related protein RAB 91.3 0.43 1.5E-05 37.9 6.4 65 167-231 58-126 (181)
247 2v1u_A Cell division control p 91.2 0.28 9.5E-06 44.5 5.9 42 48-90 42-89 (387)
248 2cdn_A Adenylate kinase; phosp 91.2 0.19 6.7E-06 41.4 4.4 36 47-88 17-52 (201)
249 2ehv_A Hypothetical protein PH 91.2 0.25 8.4E-06 42.0 5.2 42 48-90 28-70 (251)
250 2f7s_A C25KG, RAS-related prot 91.2 0.35 1.2E-05 40.1 6.0 66 166-231 83-154 (217)
251 2p5t_B PEZT; postsegregational 91.0 0.16 5.5E-06 43.8 3.8 39 47-89 29-67 (253)
252 2grj_A Dephospho-COA kinase; T 90.9 0.2 6.9E-06 41.4 4.2 35 49-89 11-45 (192)
253 2r2a_A Uncharacterized protein 90.9 0.18 6.1E-06 42.0 3.8 39 49-88 4-48 (199)
254 2qby_B CDC6 homolog 3, cell di 90.9 0.2 6.7E-06 45.7 4.5 41 48-89 43-91 (384)
255 2p5s_A RAS and EF-hand domain 90.9 0.84 2.9E-05 37.2 8.0 64 167-230 77-145 (199)
256 3orf_A Dihydropteridine reduct 90.9 0.19 6.5E-06 43.2 4.1 43 43-90 15-57 (251)
257 3kkq_A RAS-related protein M-R 90.9 1.2 4.1E-05 35.4 8.8 65 167-231 66-136 (183)
258 1kag_A SKI, shikimate kinase I 90.8 0.14 4.8E-06 41.0 3.0 34 49-88 3-36 (173)
259 1jjv_A Dephospho-COA kinase; P 90.7 0.25 8.4E-06 40.9 4.5 34 49-89 1-34 (206)
260 1gvn_B Zeta; postsegregational 90.7 0.17 6E-06 44.6 3.8 36 50-88 32-67 (287)
261 1xwi_A SKD1 protein; VPS4B, AA 90.7 1.4 4.8E-05 39.3 9.9 37 49-88 44-80 (322)
262 3lv8_A DTMP kinase, thymidylat 90.5 0.26 9E-06 42.2 4.6 35 50-85 27-62 (236)
263 4eaq_A DTMP kinase, thymidylat 90.4 0.34 1.2E-05 41.1 5.2 36 48-85 24-59 (229)
264 2il1_A RAB12; G-protein, GDP, 90.3 0.7 2.4E-05 37.5 7.0 66 166-231 74-144 (192)
265 2yc2_C IFT27, small RAB-relate 90.3 0.48 1.6E-05 38.7 6.0 66 166-231 72-145 (208)
266 3q72_A GTP-binding protein RAD 90.3 1.5 5.1E-05 34.1 8.8 66 166-231 48-119 (166)
267 2jeo_A Uridine-cytidine kinase 90.3 0.35 1.2E-05 41.4 5.2 41 48-89 23-68 (245)
268 3l0i_B RAS-related protein RAB 90.3 0.23 7.9E-06 40.7 4.0 65 167-231 82-151 (199)
269 1l8q_A Chromosomal replication 90.3 0.32 1.1E-05 43.4 5.2 38 50-88 37-74 (324)
270 1zuh_A Shikimate kinase; alpha 90.2 0.22 7.5E-06 39.7 3.7 35 49-89 6-40 (168)
271 3hjn_A DTMP kinase, thymidylat 90.2 0.41 1.4E-05 39.6 5.4 30 58-87 7-36 (197)
272 2i1q_A DNA repair and recombin 90.2 0.16 5.5E-06 45.5 3.2 41 49-90 97-153 (322)
273 1zp6_A Hypothetical protein AT 90.2 0.24 8.2E-06 40.3 4.0 37 48-88 7-43 (191)
274 2o52_A RAS-related protein RAB 90.1 0.62 2.1E-05 38.1 6.5 65 167-231 74-143 (200)
275 1x3s_A RAS-related protein RAB 90.1 0.89 3.1E-05 36.5 7.4 66 166-231 63-134 (195)
276 2ew1_A RAS-related protein RAB 90.0 0.56 1.9E-05 38.6 6.2 65 167-231 75-144 (201)
277 4fcw_A Chaperone protein CLPB; 90.0 0.4 1.4E-05 42.3 5.6 40 50-90 47-86 (311)
278 1zj6_A ADP-ribosylation factor 89.9 0.81 2.8E-05 36.8 7.0 66 166-231 59-130 (187)
279 3q85_A GTP-binding protein REM 89.7 1.3 4.4E-05 34.6 8.0 66 166-231 50-122 (169)
280 2f6r_A COA synthase, bifunctio 89.7 0.32 1.1E-05 42.7 4.6 35 48-89 73-107 (281)
281 2fn4_A P23, RAS-related protei 89.6 2 6.7E-05 33.8 9.1 65 167-231 57-127 (181)
282 3cpj_B GTP-binding protein YPT 89.6 0.82 2.8E-05 38.1 7.0 65 167-231 62-131 (223)
283 2vo1_A CTP synthase 1; pyrimid 89.6 0.58 2E-05 40.4 5.9 43 48-90 21-64 (295)
284 3aez_A Pantothenate kinase; tr 89.6 0.53 1.8E-05 42.0 6.0 43 47-90 87-131 (312)
285 3e1s_A Exodeoxyribonuclease V, 89.6 0.38 1.3E-05 46.9 5.4 53 26-86 187-239 (574)
286 1uf9_A TT1252 protein; P-loop, 89.5 0.31 1.1E-05 39.9 4.2 35 48-89 6-40 (203)
287 2bme_A RAB4A, RAS-related prot 89.5 0.69 2.3E-05 37.0 6.2 65 167-231 59-128 (186)
288 1tev_A UMP-CMP kinase; ploop, 89.4 0.28 9.6E-06 39.8 3.8 32 51-88 4-35 (196)
289 3v9p_A DTMP kinase, thymidylat 89.3 0.36 1.2E-05 41.1 4.5 36 50-86 25-64 (227)
290 3jvv_A Twitching mobility prot 89.3 5.2 0.00018 36.2 12.6 35 51-86 124-159 (356)
291 4dsu_A GTPase KRAS, isoform 2B 89.3 2 7E-05 34.1 9.0 65 167-231 52-122 (189)
292 2c95_A Adenylate kinase 1; tra 89.2 0.27 9.3E-06 40.0 3.6 33 50-88 9-41 (196)
293 3lw7_A Adenylate kinase relate 89.2 0.22 7.5E-06 39.5 2.9 27 52-83 3-29 (179)
294 4tmk_A Protein (thymidylate ki 89.1 0.41 1.4E-05 40.2 4.6 35 50-85 3-38 (213)
295 2orv_A Thymidine kinase; TP4A 88.8 0.7 2.4E-05 39.3 5.9 42 46-88 15-56 (234)
296 1r5b_A Eukaryotic peptide chai 88.8 0.36 1.2E-05 45.7 4.6 66 166-231 120-194 (467)
297 1aky_A Adenylate kinase; ATP:A 88.8 0.35 1.2E-05 40.4 4.1 33 50-88 4-36 (220)
298 3cm0_A Adenylate kinase; ATP-b 88.6 0.36 1.2E-05 39.0 3.9 33 50-88 4-36 (186)
299 2bwj_A Adenylate kinase 5; pho 88.6 0.24 8E-06 40.5 2.8 33 50-88 12-44 (199)
300 3ged_A Short-chain dehydrogena 88.6 0.33 1.1E-05 41.9 3.8 36 49-89 1-36 (247)
301 4a74_A DNA repair and recombin 88.5 0.37 1.3E-05 40.3 4.0 41 48-89 23-69 (231)
302 3n70_A Transport activator; si 88.5 0.21 7.2E-06 38.9 2.3 36 53-90 27-62 (145)
303 1kk1_A EIF2gamma; initiation o 88.3 0.31 1.1E-05 45.3 3.7 65 167-231 83-150 (410)
304 3crm_A TRNA delta(2)-isopenten 88.2 0.38 1.3E-05 43.2 4.0 36 49-90 4-39 (323)
305 1cke_A CK, MSSA, protein (cyti 88.1 0.42 1.5E-05 40.0 4.2 24 51-75 6-29 (227)
306 4ag6_A VIRB4 ATPase, type IV s 88.1 0.44 1.5E-05 43.9 4.6 45 53-98 38-82 (392)
307 3syl_A Protein CBBX; photosynt 88.1 0.66 2.3E-05 40.8 5.6 39 48-87 65-107 (309)
308 3i8s_A Ferrous iron transport 88.0 1.2 4.3E-05 38.6 7.3 89 166-258 49-151 (274)
309 3ic5_A Putative saccharopine d 88.0 0.98 3.4E-05 33.1 5.8 36 48-89 3-39 (118)
310 2vhj_A Ntpase P4, P4; non- hyd 87.9 0.19 6.4E-06 45.2 1.8 34 50-87 123-156 (331)
311 2b6h_A ADP-ribosylation factor 87.8 2.8 9.7E-05 33.8 9.0 80 166-250 72-157 (192)
312 2vli_A Antibiotic resistance p 87.8 0.24 8.1E-06 39.9 2.3 30 50-83 5-34 (183)
313 1pzn_A RAD51, DNA repair and r 87.7 0.41 1.4E-05 43.5 4.0 42 48-90 129-176 (349)
314 2a5y_B CED-4; apoptosis; HET: 87.7 0.38 1.3E-05 46.5 4.0 25 48-73 150-174 (549)
315 1s0u_A EIF-2-gamma, translatio 87.7 0.54 1.8E-05 43.6 4.9 64 167-231 81-148 (408)
316 2h57_A ADP-ribosylation factor 87.7 1 3.6E-05 36.2 6.2 66 166-231 66-139 (190)
317 1ky3_A GTP-binding protein YPT 87.6 1.9 6.5E-05 34.0 7.7 66 166-231 57-131 (182)
318 1fnn_A CDC6P, cell division co 87.5 0.52 1.8E-05 42.8 4.7 38 52-90 46-84 (389)
319 3iij_A Coilin-interacting nucl 87.3 0.45 1.5E-05 38.3 3.7 25 50-75 11-35 (180)
320 3a8t_A Adenylate isopentenyltr 87.2 0.51 1.8E-05 42.6 4.3 36 49-90 39-74 (339)
321 1jbw_A Folylpolyglutamate synt 87.2 0.99 3.4E-05 42.1 6.5 49 31-85 23-71 (428)
322 1ak2_A Adenylate kinase isoenz 87.2 0.53 1.8E-05 39.8 4.2 33 50-88 16-48 (233)
323 3exa_A TRNA delta(2)-isopenten 87.1 0.55 1.9E-05 42.0 4.3 33 51-89 4-36 (322)
324 3cbq_A GTP-binding protein REM 87.1 4.2 0.00014 32.9 9.6 65 167-231 72-143 (195)
325 3foz_A TRNA delta(2)-isopenten 87.1 0.86 2.9E-05 40.6 5.6 36 48-89 8-43 (316)
326 2chg_A Replication factor C sm 87.0 0.29 9.9E-06 40.3 2.4 35 53-88 41-75 (226)
327 1r8s_A ADP-ribosylation factor 87.0 3.3 0.00011 31.9 8.7 66 166-231 43-114 (164)
328 4djt_A GTP-binding nuclear pro 87.0 0.73 2.5E-05 38.1 5.0 65 167-231 61-130 (218)
329 3cb4_D GTP-binding protein LEP 86.8 0.81 2.8E-05 44.7 5.8 82 166-250 70-153 (599)
330 2jaq_A Deoxyguanosine kinase; 86.8 0.5 1.7E-05 38.6 3.8 24 52-76 2-25 (205)
331 3t15_A Ribulose bisphosphate c 86.8 0.51 1.8E-05 41.6 4.0 35 49-87 35-69 (293)
332 1zak_A Adenylate kinase; ATP:A 86.7 0.4 1.4E-05 40.2 3.1 26 50-76 5-30 (222)
333 2iwr_A Centaurin gamma 1; ANK 86.7 4.3 0.00015 31.8 9.3 61 167-230 54-120 (178)
334 3te6_A Regulatory protein SIR3 86.7 0.44 1.5E-05 42.7 3.5 42 47-89 42-90 (318)
335 1zd9_A ADP-ribosylation factor 86.7 1.2 4E-05 35.9 5.9 66 166-231 66-137 (188)
336 3be4_A Adenylate kinase; malar 86.6 0.35 1.2E-05 40.5 2.7 32 51-88 6-37 (217)
337 1wb1_A Translation elongation 86.6 0.42 1.5E-05 45.4 3.6 65 166-231 72-138 (482)
338 3izq_1 HBS1P, elongation facto 86.6 0.77 2.6E-05 45.0 5.5 66 166-231 244-318 (611)
339 1w4r_A Thymidine kinase; type 86.6 1.1 3.9E-05 36.9 5.7 48 41-89 11-58 (195)
340 4dkx_A RAS-related protein RAB 86.5 2.8 9.6E-05 35.0 8.4 66 166-231 61-131 (216)
341 3dii_A Short-chain dehydrogena 86.5 0.51 1.7E-05 40.3 3.8 36 49-89 1-36 (247)
342 3umf_A Adenylate kinase; rossm 86.4 0.7 2.4E-05 38.9 4.5 28 47-75 26-53 (217)
343 1vht_A Dephospho-COA kinase; s 86.3 0.87 3E-05 37.8 5.1 32 50-88 4-35 (218)
344 2h17_A ADP-ribosylation factor 86.3 0.74 2.5E-05 36.8 4.5 66 166-231 64-135 (181)
345 3lda_A DNA repair protein RAD5 86.2 0.49 1.7E-05 43.8 3.7 41 49-90 177-223 (400)
346 2pt5_A Shikimate kinase, SK; a 86.2 0.58 2E-05 37.0 3.7 31 52-88 2-32 (168)
347 3k53_A Ferrous iron transport 86.1 2.1 7.1E-05 37.0 7.6 87 166-255 49-145 (271)
348 1w78_A FOLC bifunctional prote 86.0 1.1 3.9E-05 41.5 6.2 35 48-85 47-81 (422)
349 1z6t_A APAF-1, apoptotic prote 86.0 0.93 3.2E-05 43.9 5.8 42 48-90 145-190 (591)
350 1c9k_A COBU, adenosylcobinamid 86.0 0.41 1.4E-05 39.1 2.7 33 53-90 2-34 (180)
351 1zd8_A GTP:AMP phosphotransfer 85.8 0.4 1.4E-05 40.3 2.7 33 50-88 7-39 (227)
352 2z4s_A Chromosomal replication 85.7 0.68 2.3E-05 43.4 4.5 38 50-88 130-169 (440)
353 3nrs_A Dihydrofolate:folylpoly 85.6 1.8 6.3E-05 40.4 7.4 36 47-85 49-84 (437)
354 2bdt_A BH3686; alpha-beta prot 85.5 0.57 2E-05 38.0 3.4 23 50-73 2-24 (189)
355 2j41_A Guanylate kinase; GMP, 85.5 0.63 2.2E-05 38.1 3.7 26 49-75 5-30 (207)
356 1tf7_A KAIC; homohexamer, hexa 85.5 0.8 2.7E-05 44.0 4.9 41 48-89 279-319 (525)
357 2zan_A Vacuolar protein sortin 85.4 7.4 0.00025 36.3 11.5 36 50-88 167-202 (444)
358 2bjv_A PSP operon transcriptio 85.3 0.55 1.9E-05 40.4 3.4 38 52-90 31-68 (265)
359 3cr8_A Sulfate adenylyltranfer 85.1 0.57 1.9E-05 45.3 3.7 41 48-89 367-408 (552)
360 1w5s_A Origin recognition comp 85.0 0.78 2.7E-05 42.0 4.5 34 57-90 58-97 (412)
361 4bas_A ADP-ribosylation factor 85.0 1.7 5.7E-05 35.1 6.1 67 166-232 62-141 (199)
362 4b3f_X DNA-binding protein smu 84.9 1 3.4E-05 44.5 5.4 35 53-87 207-241 (646)
363 3tlx_A Adenylate kinase 2; str 84.9 0.9 3.1E-05 38.8 4.5 26 49-75 28-53 (243)
364 3pgx_A Carveol dehydrogenase; 84.8 3.3 0.00011 35.8 8.2 38 48-90 13-50 (280)
365 2eyu_A Twitching motility prot 84.7 1.6 5.3E-05 37.8 6.0 40 48-88 23-63 (261)
366 1bif_A 6-phosphofructo-2-kinas 84.6 1.1 3.6E-05 42.4 5.3 37 52-88 40-76 (469)
367 3guy_A Short-chain dehydrogena 84.4 0.62 2.1E-05 39.2 3.2 35 50-89 1-35 (230)
368 1ltq_A Polynucleotide kinase; 84.4 0.69 2.4E-05 40.6 3.7 33 51-88 3-35 (301)
369 3vtz_A Glucose 1-dehydrogenase 84.3 0.75 2.6E-05 39.9 3.8 40 46-90 10-49 (269)
370 4b79_A PA4098, probable short- 84.0 0.92 3.1E-05 38.9 4.2 37 49-90 10-46 (242)
371 3t34_A Dynamin-related protein 84.0 1 3.4E-05 40.9 4.7 94 166-260 135-245 (360)
372 2qor_A Guanylate kinase; phosp 84.0 0.56 1.9E-05 38.7 2.7 25 50-75 12-36 (204)
373 2qz4_A Paraplegin; AAA+, SPG7, 83.9 1.7 5.7E-05 37.0 5.9 37 49-89 38-74 (262)
374 3llu_A RAS-related GTP-binding 83.8 2.6 9E-05 34.0 6.8 65 166-230 68-141 (196)
375 3p19_A BFPVVD8, putative blue 83.8 0.88 3E-05 39.4 4.0 37 48-89 14-50 (266)
376 3l6e_A Oxidoreductase, short-c 83.8 0.83 2.8E-05 38.7 3.8 35 50-89 3-37 (235)
377 3ch4_B Pmkase, phosphomevalona 83.7 0.96 3.3E-05 37.6 4.0 27 48-75 9-35 (202)
378 4b4t_J 26S protease regulatory 83.7 3.9 0.00013 37.8 8.4 142 50-208 182-329 (405)
379 4dhe_A Probable GTP-binding pr 83.7 1.7 6E-05 35.8 5.7 65 166-231 78-157 (223)
380 3eie_A Vacuolar protein sortin 83.5 5.1 0.00017 35.5 9.1 34 50-87 51-84 (322)
381 2ekp_A 2-deoxy-D-gluconate 3-d 83.5 0.92 3.1E-05 38.4 4.0 36 50-90 2-37 (239)
382 2fna_A Conserved hypothetical 83.4 2.6 8.8E-05 37.4 7.2 35 51-89 31-65 (357)
383 1fjh_A 3alpha-hydroxysteroid d 83.4 0.93 3.2E-05 38.6 4.0 36 50-90 1-36 (257)
384 1ofh_A ATP-dependent HSL prote 83.4 1.4 4.7E-05 38.5 5.2 36 51-90 51-86 (310)
385 2bbw_A Adenylate kinase 4, AK4 83.3 0.97 3.3E-05 38.5 4.1 25 50-75 27-51 (246)
386 4e22_A Cytidylate kinase; P-lo 83.3 0.82 2.8E-05 39.2 3.6 27 48-75 25-51 (252)
387 1wms_A RAB-9, RAB9, RAS-relate 83.3 3.2 0.00011 32.5 7.0 65 167-231 56-129 (177)
388 1o5z_A Folylpolyglutamate synt 83.2 1.8 6E-05 40.6 6.1 49 31-85 36-84 (442)
389 2ewv_A Twitching motility prot 83.1 1.6 5.4E-05 39.9 5.6 39 48-87 134-173 (372)
390 2qpt_A EH domain-containing pr 83.1 1.2 4E-05 43.2 4.9 63 168-231 155-231 (550)
391 2qp9_X Vacuolar protein sortin 83.1 3.5 0.00012 37.2 7.9 35 50-88 84-118 (355)
392 4hp8_A 2-deoxy-D-gluconate 3-d 83.0 0.79 2.7E-05 39.4 3.3 36 49-89 8-43 (247)
393 1vg8_A RAS-related protein RAB 83.0 1.1 3.8E-05 36.5 4.2 66 166-231 56-130 (207)
394 3tr0_A Guanylate kinase, GMP k 82.9 1.1 3.7E-05 36.7 4.1 25 50-75 7-31 (205)
395 1e4v_A Adenylate kinase; trans 82.7 0.84 2.9E-05 37.9 3.4 30 53-88 3-32 (214)
396 3b1v_A Ferrous iron uptake tra 82.7 6 0.0002 34.3 9.0 88 167-258 49-146 (272)
397 3tau_A Guanylate kinase, GMP k 82.6 1 3.6E-05 37.2 3.9 27 48-75 6-32 (208)
398 3a1s_A Iron(II) transport prot 82.4 2.2 7.6E-05 36.7 6.0 88 166-257 51-148 (258)
399 3l77_A Short-chain alcohol deh 82.4 1.1 3.7E-05 37.7 3.9 35 50-89 2-36 (235)
400 1w36_D RECD, exodeoxyribonucle 82.3 1.3 4.5E-05 43.4 5.0 33 53-85 166-202 (608)
401 2vos_A Folylpolyglutamate synt 82.3 1.4 4.7E-05 42.0 5.0 49 31-85 48-96 (487)
402 3fb4_A Adenylate kinase; psych 82.3 1.1 3.8E-05 37.1 3.9 22 53-75 3-24 (216)
403 3bwd_D RAC-like GTP-binding pr 82.3 2 7E-05 33.9 5.4 65 166-230 55-124 (182)
404 3h7a_A Short chain dehydrogena 82.2 1.1 3.7E-05 38.4 3.9 37 49-90 6-42 (252)
405 2cfc_A 2-(R)-hydroxypropyl-COM 82.2 1.1 3.7E-05 38.0 3.9 36 49-89 1-36 (250)
406 3tpc_A Short chain alcohol deh 82.2 1.2 4E-05 38.1 4.2 37 49-90 6-42 (257)
407 4b4t_K 26S protease regulatory 82.1 3.8 0.00013 38.1 7.9 145 48-206 204-352 (428)
408 2vp4_A Deoxynucleoside kinase; 82.1 1.2 4.1E-05 37.5 4.2 38 46-88 16-53 (230)
409 1geg_A Acetoin reductase; SDR 82.0 1.1 3.6E-05 38.4 3.8 36 49-89 1-36 (256)
410 1uay_A Type II 3-hydroxyacyl-C 81.8 0.95 3.2E-05 38.0 3.4 36 50-90 2-37 (242)
411 1ooe_A Dihydropteridine reduct 81.8 1.2 4.2E-05 37.4 4.1 36 50-90 3-38 (236)
412 1kgd_A CASK, peripheral plasma 81.8 0.98 3.3E-05 36.4 3.3 25 50-75 5-29 (180)
413 3r7w_A Gtpase1, GTP-binding pr 81.8 3.1 0.00011 36.7 6.9 66 166-231 51-128 (307)
414 3tzq_B Short-chain type dehydr 81.6 1.2 4.2E-05 38.4 4.1 37 49-90 10-46 (271)
415 3r6d_A NAD-dependent epimerase 81.6 1.3 4.6E-05 36.6 4.2 37 48-89 3-40 (221)
416 1lnz_A SPO0B-associated GTP-bi 81.4 2.1 7.3E-05 38.6 5.8 65 167-231 206-287 (342)
417 3v8b_A Putative dehydrogenase, 81.3 1.2 4.1E-05 38.9 4.0 37 48-89 26-62 (283)
418 1upt_A ARL1, ADP-ribosylation 81.3 1.4 4.7E-05 34.5 4.0 66 166-231 50-121 (171)
419 1dhr_A Dihydropteridine reduct 81.2 1.2 4.2E-05 37.6 3.9 37 49-90 6-42 (241)
420 1njg_A DNA polymerase III subu 81.2 1.5 5.1E-05 36.3 4.4 27 51-78 46-72 (250)
421 3nwj_A ATSK2; P loop, shikimat 81.1 1.1 3.7E-05 38.6 3.5 33 50-88 48-80 (250)
422 3qiv_A Short-chain dehydrogena 81.0 1.4 4.9E-05 37.4 4.3 36 49-89 8-43 (253)
423 3tfo_A Putative 3-oxoacyl-(acy 81.0 1 3.5E-05 39.0 3.3 35 50-89 4-38 (264)
424 3ney_A 55 kDa erythrocyte memb 80.9 1.1 3.9E-05 37.0 3.4 26 49-75 18-43 (197)
425 3ppi_A 3-hydroxyacyl-COA dehyd 80.9 1.4 4.7E-05 38.2 4.2 36 49-89 29-64 (281)
426 1fzq_A ADP-ribosylation factor 80.9 6.5 0.00022 31.1 8.1 66 166-231 59-130 (181)
427 1moz_A ARL1, ADP-ribosylation 80.9 2.4 8.3E-05 33.5 5.4 79 166-249 61-145 (183)
428 3pxx_A Carveol dehydrogenase; 80.8 1.6 5.4E-05 37.8 4.6 38 48-90 8-45 (287)
429 3gvc_A Oxidoreductase, probabl 80.8 1.2 4.1E-05 38.7 3.8 36 49-89 28-63 (277)
430 3bs4_A Uncharacterized protein 80.8 2.4 8.1E-05 36.7 5.6 42 48-90 19-60 (260)
431 1zmt_A Haloalcohol dehalogenas 80.7 1 3.4E-05 38.5 3.2 35 50-89 1-35 (254)
432 4dqx_A Probable oxidoreductase 80.6 1.5 5.2E-05 38.1 4.4 37 48-89 25-61 (277)
433 1ksh_A ARF-like protein 2; sma 80.6 2.7 9.3E-05 33.4 5.7 66 166-231 61-132 (186)
434 2dkn_A 3-alpha-hydroxysteroid 80.5 1.3 4.5E-05 37.4 3.8 36 50-90 1-36 (255)
435 3sx2_A Putative 3-ketoacyl-(ac 80.3 1.3 4.5E-05 38.3 3.9 37 49-90 12-48 (278)
436 3tqf_A HPR(Ser) kinase; transf 80.3 1.8 6.1E-05 35.1 4.3 27 50-81 16-42 (181)
437 1f6b_A SAR1; gtpases, N-termin 80.3 4.8 0.00017 32.6 7.2 78 167-249 69-152 (198)
438 4e6p_A Probable sorbitol dehyd 80.3 1.6 5.4E-05 37.4 4.3 36 49-89 7-42 (259)
439 2nm0_A Probable 3-oxacyl-(acyl 80.2 1.5 5.3E-05 37.5 4.2 37 49-90 20-56 (253)
440 3rwb_A TPLDH, pyridoxal 4-dehy 80.2 1.3 4.3E-05 37.8 3.6 36 49-89 5-40 (247)
441 4fn4_A Short chain dehydrogena 80.2 1.4 4.8E-05 38.0 3.9 36 49-89 6-41 (254)
442 2i3b_A HCR-ntpase, human cance 80.2 1.5 5.1E-05 35.9 3.9 27 52-79 3-29 (189)
443 3f9i_A 3-oxoacyl-[acyl-carrier 80.1 1.3 4.4E-05 37.6 3.7 39 46-89 10-48 (249)
444 2qmh_A HPR kinase/phosphorylas 80.1 1.3 4.5E-05 36.7 3.5 23 50-73 34-56 (205)
445 3oec_A Carveol dehydrogenase ( 80.1 1.2 4.3E-05 39.5 3.7 40 48-92 44-83 (317)
446 3f1l_A Uncharacterized oxidore 80.1 1.4 4.7E-05 37.6 3.9 36 49-89 11-46 (252)
447 2atx_A Small GTP binding prote 80.1 4.4 0.00015 32.4 6.9 65 167-231 66-135 (194)
448 1lv7_A FTSH; alpha/beta domain 80.0 2.6 9E-05 35.8 5.6 33 51-87 46-78 (257)
449 2jah_A Clavulanic acid dehydro 80.0 1.4 4.9E-05 37.4 3.9 35 50-89 7-41 (247)
450 2ew8_A (S)-1-phenylethanol deh 79.9 1.5 5.2E-05 37.3 4.1 35 50-89 7-41 (249)
451 1d2n_A N-ethylmaleimide-sensit 79.9 2.1 7.3E-05 36.8 5.1 36 48-87 62-97 (272)
452 2gek_A Phosphatidylinositol ma 79.9 20 0.00068 32.0 12.0 46 45-90 16-63 (406)
453 2ehd_A Oxidoreductase, oxidore 79.9 1.2 4E-05 37.4 3.3 37 48-89 3-39 (234)
454 2xb4_A Adenylate kinase; ATP-b 79.8 1.3 4.4E-05 37.1 3.5 22 53-75 3-24 (223)
455 2dtx_A Glucose 1-dehydrogenase 79.8 1.6 5.5E-05 37.5 4.2 36 50-90 8-43 (264)
456 3ijr_A Oxidoreductase, short c 79.7 1.5 5.1E-05 38.4 4.1 37 49-90 46-82 (291)
457 3rkr_A Short chain oxidoreduct 79.7 1.3 4.6E-05 37.9 3.6 37 48-89 27-63 (262)
458 2fwm_X 2,3-dihydro-2,3-dihydro 79.7 1.6 5.6E-05 37.1 4.2 36 50-90 7-42 (250)
459 2d1y_A Hypothetical protein TT 79.7 1.8 6.3E-05 36.9 4.5 36 50-90 6-41 (256)
460 1sxj_A Activator 1 95 kDa subu 79.7 1.8 6.1E-05 41.4 4.8 36 50-89 77-112 (516)
461 1um8_A ATP-dependent CLP prote 79.6 1.9 6.5E-05 39.2 4.8 35 51-89 73-107 (376)
462 3i1j_A Oxidoreductase, short c 79.6 1.2 4.1E-05 37.7 3.3 36 49-89 13-48 (247)
463 4imr_A 3-oxoacyl-(acyl-carrier 79.5 1.3 4.3E-05 38.5 3.5 37 49-90 32-68 (275)
464 2npi_A Protein CLP1; CLP1-PCF1 79.5 0.98 3.3E-05 42.7 2.9 42 48-90 136-178 (460)
465 4i1u_A Dephospho-COA kinase; s 79.5 1.7 5.7E-05 36.4 4.0 35 48-89 7-41 (210)
466 3gem_A Short chain dehydrogena 79.4 1.1 3.8E-05 38.6 3.0 36 50-90 27-62 (260)
467 3ek2_A Enoyl-(acyl-carrier-pro 79.4 1.9 6.5E-05 36.9 4.6 39 45-88 9-49 (271)
468 1n0u_A EF-2, elongation factor 79.4 2.3 7.9E-05 43.4 5.8 65 166-231 97-163 (842)
469 3dl0_A Adenylate kinase; phosp 79.3 1.2 4.2E-05 36.8 3.2 30 53-88 3-32 (216)
470 2ocp_A DGK, deoxyguanosine kin 79.3 1.2 4E-05 37.8 3.1 26 50-76 2-27 (241)
471 3o47_A ADP-ribosylation factor 79.3 4.3 0.00015 36.2 7.0 81 166-251 208-294 (329)
472 1nij_A Hypothetical protein YJ 79.1 1.2 4.2E-05 39.6 3.3 37 50-89 4-40 (318)
473 3svt_A Short-chain type dehydr 79.1 1.5 5.2E-05 38.0 3.9 36 49-89 10-45 (281)
474 1vl8_A Gluconate 5-dehydrogena 79.0 1.8 6.2E-05 37.3 4.3 36 49-89 20-55 (267)
475 3un1_A Probable oxidoreductase 79.0 1.5 5E-05 37.8 3.7 37 49-90 27-63 (260)
476 2nwq_A Probable short-chain de 79.0 1.9 6.5E-05 37.4 4.4 36 49-89 20-55 (272)
477 1q3t_A Cytidylate kinase; nucl 79.0 1.8 6.2E-05 36.5 4.2 36 48-89 14-49 (236)
478 3v2h_A D-beta-hydroxybutyrate 78.9 1.3 4.6E-05 38.5 3.5 36 48-88 23-58 (281)
479 3ucx_A Short chain dehydrogena 78.9 2 6.7E-05 36.9 4.5 36 49-89 10-45 (264)
480 1m2o_B GTP-binding protein SAR 78.9 4.8 0.00016 32.3 6.7 79 167-250 67-151 (190)
481 3pxi_A Negative regulator of g 78.9 3.6 0.00012 41.3 7.0 38 52-90 523-560 (758)
482 3rih_A Short chain dehydrogena 78.8 1.6 5.4E-05 38.4 3.9 38 48-90 39-76 (293)
483 3t7c_A Carveol dehydrogenase; 78.8 1.5 5.3E-05 38.4 3.9 37 49-90 27-63 (299)
484 3reg_A RHO-like small GTPase; 78.8 3.7 0.00013 32.9 6.0 66 166-231 70-140 (194)
485 2wsb_A Galactitol dehydrogenas 78.8 1.6 5.5E-05 36.9 3.9 35 50-89 11-45 (254)
486 2gco_A H9, RHO-related GTP-bin 78.8 3.9 0.00013 33.1 6.1 66 166-231 72-142 (201)
487 1g7s_A Translation initiation 78.7 1.3 4.6E-05 43.1 3.7 64 167-231 70-135 (594)
488 4da9_A Short-chain dehydrogena 78.7 1.9 6.3E-05 37.5 4.3 37 47-88 26-62 (280)
489 4ehx_A Tetraacyldisaccharide 4 78.6 4.3 0.00015 36.1 6.7 41 48-90 34-75 (315)
490 3lf2_A Short chain oxidoreduct 78.5 1.7 5.7E-05 37.4 3.9 36 49-89 7-42 (265)
491 3qq5_A Small GTP-binding prote 78.5 2.1 7.1E-05 39.9 4.7 62 168-232 84-154 (423)
492 4eso_A Putative oxidoreductase 78.5 1.9 6.6E-05 36.8 4.3 36 49-89 7-42 (255)
493 3nyw_A Putative oxidoreductase 78.5 1.3 4.5E-05 37.8 3.2 36 49-89 6-41 (250)
494 1zem_A Xylitol dehydrogenase; 78.4 1.7 5.7E-05 37.3 3.9 35 50-89 7-41 (262)
495 3e03_A Short chain dehydrogena 78.4 1.8 6.2E-05 37.4 4.1 37 49-90 5-41 (274)
496 4b4t_H 26S protease regulatory 78.4 6.4 0.00022 37.0 8.0 144 48-207 241-389 (467)
497 3q3j_B RHO-related GTP-binding 78.4 3 0.0001 34.4 5.4 66 166-231 74-144 (214)
498 3a28_C L-2.3-butanediol dehydr 78.3 1.1 3.8E-05 38.3 2.7 35 50-89 2-36 (258)
499 3uve_A Carveol dehydrogenase ( 78.3 1.6 5.6E-05 37.9 3.9 36 49-89 10-45 (286)
500 3h4m_A Proteasome-activating n 78.2 2.5 8.4E-05 36.5 5.0 35 50-88 51-85 (285)
No 1
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=100.00 E-value=1.7e-37 Score=276.94 Aligned_cols=244 Identities=39% Similarity=0.655 Sum_probs=211.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
|+++|+|+|+|||+||||+|+|||..|+++|++|++||+|++.+++..++|.+.....++.+++.+...+.+.+.+....
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 80 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Confidence 57999999999999999999999999999999999999999779999999998776789999999988888877776666
Q ss_pred CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHH
Q 047623 129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 208 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~ 208 (340)
++++++|++.... ........+..+++.+++. .||+||||+||+.+.....++..||.+++|+.++..++..+.+
T Consensus 81 ~~l~~lp~~~~~~--~~~~~~~~~~~~l~~l~~~---~yD~viiD~p~~~~~~~~~~l~~ad~vi~v~~~~~~s~~~~~~ 155 (260)
T 3q9l_A 81 ENLYILPASQTRD--KDALTREGVAKVLDDLKAM---DFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDR 155 (260)
T ss_dssp TTEEEECCCSCCC--TTSSCHHHHHHHHHHHHHT---TCSEEEEECCSSSSHHHHHHHHTCSEEEEEECSSHHHHHHHHH
T ss_pred CCEEEecCCCccc--hhhCCHHHHHHHHHHHhcc---CCCEEEEcCCCCCCHHHHHHHHhCCEEEEEecCChhHHHHHHH
Confidence 8999999877642 2335566677777777651 6999999999999998899999999999999999999999999
Q ss_pred HHHHHHhcCC--------CceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCH
Q 047623 209 VTGLLECDGI--------RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTL 280 (340)
Q Consensus 209 ~~~~l~~~~~--------~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~ 280 (340)
+++.++..+. ..+++|+|+++++..........+++.+.+|.++++.||+++.+.++...|+|+.. .|+++
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~-~~~s~ 234 (260)
T 3q9l_A 156 ILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVIL-DINAD 234 (260)
T ss_dssp HHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEEEEEEECCHHHHHHHHHTCCGGG-CTTCH
T ss_pred HHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCceEEecCCChhHHHHHHcCCCeEE-CCCCH
Confidence 9999986542 47899999998764333344456788899999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHhcccc
Q 047623 281 AGLAFEQAAWRLVEQDSM 298 (340)
Q Consensus 281 ~~~~~~~la~~i~~~~~~ 298 (340)
++++|.+|+++|+++...
T Consensus 235 ~~~~~~~la~~l~~~~~~ 252 (260)
T 3q9l_A 235 AGKAYADTVERLLGEERP 252 (260)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 999999999999998643
No 2
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=100.00 E-value=1.3e-37 Score=278.49 Aligned_cols=258 Identities=33% Similarity=0.485 Sum_probs=197.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
|+++|+|+|+|||+||||+|+|||..|+++|++|++||+|++.++++.+|+.+... .++.+++.+...+++.+....
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~-~~l~~~l~~~~~~~~~i~~~~-- 77 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLP-VTLQNVLAGEARIDEAIYVGP-- 77 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCC-CCHHHHHTTSSCGGGGCEECG--
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCC-CCHHHHHcCCCcHHHhheeCC--
Confidence 57999999999999999999999999999999999999999779999999987652 688899988777777665543
Q ss_pred CceeEeecCCCCCCCCCCcc-hhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHH
Q 047623 129 SNFELLCISKPRSKLPLGFG-GKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDAD 207 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~ 207 (340)
++++++|+...... .... ...+..+++.+.+ +||+||||+||+.......++..+|.+++|+.++..++..+.
T Consensus 78 ~~l~~lp~~~~~~~--~~~~~~~~l~~~l~~l~~----~yD~viiD~~~~~~~~~~~~~~~ad~vi~v~~~~~~~~~~~~ 151 (263)
T 1hyq_A 78 GGVKVVPAGVSLEG--LRKANPEKLEDVLTQIME----STDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGL 151 (263)
T ss_dssp GGCEEEECCSCHHH--HHHHCHHHHHHHHHHHHH----TCSEEEEECCSSSSHHHHHHHHHSSEEEEEECSSHHHHHHHH
T ss_pred CCeEEEcCCCCcCh--hhccChHHHHHHHHHHHh----hCCEEEEeCCCCCChHHHHHHHHCCEEEEEeCCChhHHHHHH
Confidence 78999984432110 0111 3455566666665 799999999999998888899999999999999999999999
Q ss_pred HHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHH
Q 047623 208 RVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQ 287 (340)
Q Consensus 208 ~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~ 287 (340)
++++.++..+...+++|+|++++.... ....++.+.++.++++.||+++.+.++...|+|+.++.|+++++++|.+
T Consensus 152 ~~~~~l~~~~~~~~~vv~N~~~~~~~~----~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 227 (263)
T 1hyq_A 152 KTKIVAERLGTKVLGVVVNRITTLGIE----MAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARAIVE 227 (263)
T ss_dssp HHHHHHHHHTCEEEEEEEEEECTTTHH----HHHHHHHHHTTSCEEEEEECCHHHHHHHHHTSCHHHHCTTSHHHHHHHH
T ss_pred HHHHHHHhcCCCeeEEEEccCCccccc----chHHHHHHHhCCCeEEECCCCHHHHHHHHcCCceEEcCCCCHHHHHHHH
Confidence 999999887788899999999876421 3466788889999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccchhhhccCccccchhhhhccc
Q 047623 288 AAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLG 319 (340)
Q Consensus 288 la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (340)
|+++|.++.....+......++++||++++++
T Consensus 228 la~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (263)
T 1hyq_A 228 LANYIAGGAKKKVPAEVKEKKKEGALAKMLRI 259 (263)
T ss_dssp HHHHHC--------------------------
T ss_pred HHHHHHhhcccCCCccCcchhhHHHHHHHHHH
Confidence 99999887321111111225777888888764
No 3
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=100.00 E-value=7.9e-36 Score=262.59 Aligned_cols=235 Identities=33% Similarity=0.506 Sum_probs=198.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
|+++|+|+|+|||+||||+|+|||..|+++|++|++||+|++.++++.+|+.+... .++.+++.+...+++.+.+.. .
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~-~~l~~~l~~~~~~~~~i~~~~-~ 78 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPD-VTLHDVLAGEANVEDAIYMTQ-F 78 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCS-SCHHHHHTTSSCGGGGCEECS-S
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCC-CCHHHHhcCCCCHHHHhhcCC-C
Confidence 57999999999999999999999999999999999999999889999999987652 688899888777766655433 4
Q ss_pred CceeEeecCCCCCCCCCCcc-hhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHH
Q 047623 129 SNFELLCISKPRSKLPLGFG-GKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDAD 207 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~ 207 (340)
++++++|+...... .... ...+..+++.+++ +||+||||+||+.......++..+|.+++|+.++..++..+.
T Consensus 79 ~~l~~lp~~~~~~~--~~~~~~~~l~~~l~~l~~----~yD~viiD~~~~~~~~~~~~~~~ad~vi~v~~~~~~~~~~~~ 152 (237)
T 1g3q_A 79 DNVYVLPGAVDWEH--VLKADPRKLPEVIKSLKD----KFDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTM 152 (237)
T ss_dssp TTEEEECCCCSHHH--HHHCCGGGHHHHHHTTGG----GCSEEEEECCSSSSHHHHHHHTTCSEEEEEECSCHHHHHHHH
T ss_pred CCEEEEeCCCccch--hhhcCHHHHHHHHHHHHh----cCCEEEEECCCCcCHHHHHHHHHCCeEEEEecCCcccHHHHH
Confidence 78999984322110 0111 3455555555544 799999999999998888999999999999999999999999
Q ss_pred HHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHH
Q 047623 208 RVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQ 287 (340)
Q Consensus 208 ~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~ 287 (340)
++++.++..+....++|+|++++.... ...+++.+.++.++++.||+++.+.++...|+|+.++.|+++++++|.+
T Consensus 153 ~~~~~l~~~~~~~~~vv~N~~~~~~~~----~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 228 (237)
T 1g3q_A 153 KVGIVLKKAGLAILGFVLNRYGRSDRD----IPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKAFVK 228 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEEETSCTTC----CCHHHHHHHHCSCEEEEEECCHHHHHHHHHTSCHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHhCCCceEEEEEecCCcccch----hHHHHHHHHhCccceeeCCCChHHHHHHHcCCCeEEeCCCCHHHHHHHH
Confidence 999999988888899999999876422 3467788889999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 047623 288 AAWRLVEQ 295 (340)
Q Consensus 288 la~~i~~~ 295 (340)
|+++|.++
T Consensus 229 la~~l~~~ 236 (237)
T 1g3q_A 229 LAEEIEKL 236 (237)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999865
No 4
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=100.00 E-value=4.3e-36 Score=265.48 Aligned_cols=236 Identities=23% Similarity=0.320 Sum_probs=196.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceec--
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVR-- 124 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-- 124 (340)
+++++|+|+|+|||+||||+|+|||..|+++ |++|++||+|++.++++.+|+... +..++.+++.+....++.+..
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~ 80 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNT-HSQDLADISNASDRLDKSLLDTM 80 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSC-CSCCHHHHHHTGGGCCHHHHHHH
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCC-CCCCHHHHHhhHhhhhHHHHHHH
Confidence 5689999999999999999999999999998 999999999999999999985332 347888998876655432211
Q ss_pred -ccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhH
Q 047623 125 -DKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSL 203 (340)
Q Consensus 125 -~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~ 203 (340)
....++++++|++........ +..+.+..+++.+++ +||+||||+||+.+.....++..||.+++|+.++..++
T Consensus 81 ~~~~~~~l~~l~~~~~~~~~~~-~~~~~l~~~l~~l~~----~yD~viiD~p~~~~~~~~~~l~~ad~viiv~~~~~~~~ 155 (245)
T 3ea0_A 81 VQHISPSLDLIPSPATFEKIVN-IEPERVSDLIHIAAS----FYDYIIVDFGASIDHVGVWVLEHLDELCIVTTPSLQSL 155 (245)
T ss_dssp SEEEETTEEEECCCSSHHHHHH-CCHHHHHHHHHHHHH----HCSEEEEEEESSCCTTHHHHGGGCSEEEEEECSSHHHH
T ss_pred hEecCCCeEEEcCCCChHhhhc-CCHHHHHHHHHHHHh----hCCEEEEeCCCCCchHHHHHHHHCCEEEEEecCcHHHH
Confidence 123489999998765433221 445667777877776 69999999999998888899999999999999999999
Q ss_pred HHHHHHHHHHHhcC--CCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCCh-HHHHHHhcCCceEeeCCCCH
Q 047623 204 RDADRVTGLLECDG--IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDS-EVIRSTNRGYPLVLNKPPTL 280 (340)
Q Consensus 204 ~~~~~~~~~l~~~~--~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~-~~~~a~~~g~~v~~~~~~s~ 280 (340)
..+.++++.++..+ ...+++|+|+++++.. ...+++++.+|.++++.||+++ .+.++...|+|+.++.|+++
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~-----~~~~~~~~~~~~~v~~~ip~~~~~~~~a~~~g~~v~~~~~~s~ 230 (245)
T 3ea0_A 156 RRAGQLLKLCKEFEKPISRIEIILNRADTNSR-----ITSDEIEKVIGRPISKRIPQDEDAMQESLLSGQSVLKVAPKSQ 230 (245)
T ss_dssp HHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT-----SCHHHHHHHHTSCEEEEECCCHHHHHHHHHHTSCHHHHCTTSH
T ss_pred HHHHHHHHHHHHhCCCccceEEEEecCCCCCC-----CCHHHHHHHhCCCeEEECCCChHHHHHHHHcCCCccccCCCCH
Confidence 99999999998776 5679999999987642 2346888899999999999997 68999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 047623 281 AGLAFEQAAWRLVE 294 (340)
Q Consensus 281 ~~~~~~~la~~i~~ 294 (340)
++++|.+|+++|++
T Consensus 231 ~~~~~~~la~~l~g 244 (245)
T 3ea0_A 231 LSKTIVDWALHLNG 244 (245)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998875
No 5
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=100.00 E-value=7.8e-35 Score=266.37 Aligned_cols=265 Identities=20% Similarity=0.239 Sum_probs=197.8
Q ss_pred HHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC
Q 047623 35 SVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG 114 (340)
Q Consensus 35 ~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~ 114 (340)
+.++..+......+.+++|+|+ +|||+||||+|+|||..|+++|++|++||+|++ +++..+++... ..++.+++.+
T Consensus 26 ~~l~~~l~~~~~~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~-~~~~~~l~~~~--~~~l~d~l~~ 101 (307)
T 3end_A 26 GSVQVHLDEADKITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK-HDSTFTLTGSL--VPTVIDVLKD 101 (307)
T ss_dssp --------------CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS-CCTTHHHHTSC--CCCHHHHHHH
T ss_pred chhhhhhccccccCCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC-CCHHHHhCccC--CCCHHHHHhh
Confidence 3444444444466788999999 899999999999999999999999999999998 67777776543 4788888865
Q ss_pred ------CCccccceecccccCceeEeecCCCCCCCCCC-cchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH-HHHHHH
Q 047623 115 ------DCRLDQALVRDKRWSNFELLCISKPRSKLPLG-FGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA-GFITAI 186 (340)
Q Consensus 115 ------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~-~~~~~l 186 (340)
...+++.+.. ..++++++|++......... ........+++.+ .+.++||||||||||+... ....++
T Consensus 102 ~~~~~~~~~~~~~i~~--~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~yD~ViiD~p~~~~~~~~~~~l 177 (307)
T 3end_A 102 VDFHPEELRPEDFVFE--GFNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQH--HLLDDTDVVIFDVLGDVVCGGFAAPL 177 (307)
T ss_dssp TTSCGGGCCHHHHCEE--CGGGCEEEECCCCCSSSSCTTHHHHHHHHHHHHT--TTTSSCSEEEEEECCSSCCGGGGGGG
T ss_pred ccccccCCCHHHhhcc--CCCCceEEECCCcccccccchhhhHHHHHHHHhh--hccccCCEEEEeCCCccchHHHHHHH
Confidence 3344555544 34899999888765433221 1222233334332 1456899999999998763 456778
Q ss_pred hcCCeEEEEeCCChhhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHH
Q 047623 187 TPANEAVLVTTPDITSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEV 262 (340)
Q Consensus 187 ~~ad~viiv~~~~~~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~ 262 (340)
..||.+++|+.++..++..+.++++.++.. +.+.+++|+|+++.+. ..+++.+.+|.++++.||+++.+
T Consensus 178 ~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~~-------~~~~~~~~~g~~v~~~Ip~~~~v 250 (307)
T 3end_A 178 QHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATD-------EVDRFCKETNFRRLAHMPDLDAI 250 (307)
T ss_dssp GTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCCH-------HHHHHHHHHTCCEEEEECCCHHH
T ss_pred HHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcHH-------HHHHHHHHcCCCceeeCCccHHH
Confidence 899999999999999999999999999863 4456789999998642 36678888999999999999999
Q ss_pred HHHHhcCCceEeeCCC---CHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhc
Q 047623 263 IRSTNRGYPLVLNKPP---TLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFG 317 (340)
Q Consensus 263 ~~a~~~g~~v~~~~~~---s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (340)
.++...|+|+.++.|+ ++++++|.+|+++|+++.... .+...++++|..||+
T Consensus 251 ~~a~~~g~~v~~~~p~~~~s~~~~~~~~la~~l~~~~~~~---~~~~~~~~~~~~~~~ 305 (307)
T 3end_A 251 RRSRLKKKTLFEMDEDQDVLAARAEYIRLAESLWRGLDPI---DPHSLPDRDIFELLG 305 (307)
T ss_dssp HHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCHHHHHHHTT
T ss_pred HHHHHcCCCeEeeCCccccHHHHHHHHHHHHHHHhcCCCC---CCCCCCHHHHHHHhC
Confidence 9999999999999998 899999999999999997553 234455556666654
No 6
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=100.00 E-value=4.3e-35 Score=261.39 Aligned_cols=238 Identities=22% Similarity=0.316 Sum_probs=187.1
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
++++++|+|+|+|||+||||+|+|||..|+++|+||++||+|++ +++..+|+.++ ..++.+++.+. .+++.+.+
T Consensus 3 ~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~~~~~l~~~~--~~~l~~~l~~~-~~~~~i~~-- 76 (257)
T 1wcv_1 3 RAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ-GNATSGLGVRA--ERGVYHLLQGE-PLEGLVHP-- 76 (257)
T ss_dssp --CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT-CHHHHHTTCCC--SCCHHHHHTTC-CGGGTCEE--
T ss_pred CCCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC-cCHHHHhCCCC--CCCHHHHHcCC-CHHHHccc--
Confidence 46779999999999999999999999999999999999999998 78888898876 36888988876 66665554
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhcc-CCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHH
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQE-GSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRD 205 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~ 205 (340)
.++++++|++.........+.... +.+.+.+. .+||||||||||+.+.....++..||.+++|+.++..++..
T Consensus 77 -~~~l~vlp~~~~~~~~~~~l~~~~-----~~l~~~l~~~~yD~iiiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~ 150 (257)
T 1wcv_1 77 -VDGFHLLPATPDLVGATVELAGAP-----TALREALRDEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEG 150 (257)
T ss_dssp -ETTEEEECCCTTHHHHHHHHTTCT-----THHHHHCCCTTCSEEEEECCSSCCHHHHHHHHHCSEEEEEEESSTHHHHH
T ss_pred -cCCEEEEeCChhHHHHHHHHhhHH-----HHHHHHhcccCCCEEEEeCCCCCCHHHHHHHHHCCeEEEEecCchHHHHH
Confidence 489999988755321100000000 12222221 47999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHhc------CCCceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecCChHHHHHHhcCCceEeeCCC
Q 047623 206 ADRVTGLLECD------GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSEVIRSTNRGYPLVLNKPP 278 (340)
Q Consensus 206 ~~~~~~~l~~~------~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~~~~a~~~g~~v~~~~~~ 278 (340)
+.++++.++.. +.+..++|+|+++.+..... ...+.+++.++.+++ +.||++..+.++...|+|+.++.|+
T Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~--~~~~~l~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~ 228 (257)
T 1wcv_1 151 VAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ--QVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPT 228 (257)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH--HHHHHHHHHHGGGBCSCCCBCCHHHHHHHHHTCCHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH--HHHHHHHHHccccccCccCCCcHHHHHHHHcCCCHHHhCCC
Confidence 98888887642 34456899999987542211 224567777888876 7899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcccc
Q 047623 279 TLAGLAFEQAAWRLVEQDSM 298 (340)
Q Consensus 279 s~~~~~~~~la~~i~~~~~~ 298 (340)
++++++|.+|+++|+++.+.
T Consensus 229 ~~~~~~~~~la~~l~~~~~~ 248 (257)
T 1wcv_1 229 SPGAHAYRRLAEEVMARVQE 248 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHC-
T ss_pred ChHHHHHHHHHHHHHHhhcc
Confidence 99999999999999987643
No 7
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=100.00 E-value=1.1e-33 Score=256.48 Aligned_cols=257 Identities=19% Similarity=0.269 Sum_probs=194.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCC-----ccccceec
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC-----RLDQALVR 124 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~ 124 (340)
|++|+| ++|||+||||+|+|||..|+++|++|++||+|+|.+....+++... ..++.+++.+.. .+++.+..
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~~i~~ 78 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKA--QNTIMEMAAEAGTVEDLELEDVLKA 78 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSS--CCBHHHHHHTTSSGGGCCHHHHCEE
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCC--CCcHHHHHhcccccccCCHHHhhcc
Confidence 689999 5799999999999999999999999999999999777777776544 367888887642 33444332
Q ss_pred ccccCceeEeecCCCCCCCCCCcchhhHH---HHHHHHHHhccCCCCEEEEcCCCCCCH--HH-HHHHhcCCeEEEEeCC
Q 047623 125 DKRWSNFELLCISKPRSKLPLGFGGKALT---WVVEALKSRQEGSPDFILIDCPAGIDA--GF-ITAITPANEAVLVTTP 198 (340)
Q Consensus 125 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~---~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~-~~~l~~ad~viiv~~~ 198 (340)
..++++++|++....... ....... .+++.+.. +.++|||||||||+.... .. ......||.+++|+.+
T Consensus 79 --~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~l~~~l~~-l~~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~ 153 (289)
T 2afh_E 79 --GYGGVKCVESGGPEPGVG--CAGRGVITAINFLEEEGA-YEDDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG 153 (289)
T ss_dssp --CGGGCEEEECCCCCTTTC--CHHHHHHHHHHHHHHTTC-SSTTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS
T ss_pred --CCCCeEEEeCCCcccccc--ccchhhhHHHHHHHHHHh-hccCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecC
Confidence 348899999876543221 1111111 23333321 355799999999986532 11 1223579999999999
Q ss_pred ChhhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEe
Q 047623 199 DITSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVL 274 (340)
Q Consensus 199 ~~~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~ 274 (340)
+..++..+.++++.++.. +.+..++|+|+++... .....+++.+.+|.++++.||++..+.++...|+|+.+
T Consensus 154 ~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~----~~~~~~~l~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~ 229 (289)
T 2afh_E 154 EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----EDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIE 229 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HHHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchh----HHHHHHHHHHHcCccccccCCCchhHHHHHHcCCCcee
Confidence 999999999888888652 4556899999986532 22335677788999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623 275 NKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL 318 (340)
Q Consensus 275 ~~~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (340)
+.|+++++++|.+|+++|+++.....+.+.+...+++|+.+|+.
T Consensus 230 ~~~~s~~~~~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (289)
T 2afh_E 230 YDPKAKQADEYRALARKVVDNKLLVIPNPITMDELEELLMEFGI 273 (289)
T ss_dssp HCTTSHHHHHHHHHHHHHHHCCCCBCCCCCCHHHHHHHHHHTTS
T ss_pred eCCCCHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhCc
Confidence 99999999999999999999877654555566778888888876
No 8
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=3.6e-33 Score=254.86 Aligned_cols=268 Identities=21% Similarity=0.239 Sum_probs=183.5
Q ss_pred hHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHh
Q 047623 32 SIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEV 111 (340)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~ 111 (340)
.-+-+++.+..+...-...|+|+|+ +||||||||+|+|||.+||+.|+||++||+|++.++...+++.... ...+.
T Consensus 30 ~~~~~~~~~~~~~~~i~~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~---~~~~~ 105 (314)
T 3fwy_A 30 DGEGSVQVHLDEADKITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVP---TVIDV 105 (314)
T ss_dssp -----------------CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCC---CHHHH
T ss_pred CCCcccccccCcccCCCCceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCC---cchhh
Confidence 3344555556666677888999998 6999999999999999999999999999999995555444433322 22222
Q ss_pred hc------CCCccccceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHH-hccCCCCEEEEcCCCCCCHHHH-
Q 047623 112 LN------GDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKS-RQEGSPDFILIDCPAGIDAGFI- 183 (340)
Q Consensus 112 l~------~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~D~VIiD~~~~~~~~~~- 183 (340)
.. .....++.+.. ...++.+++++....... +........+..+.+ .+.+.||+|++|++++......
T Consensus 106 ~~~~~~~~~~~~~~d~i~~--~~~~i~~v~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~ 181 (314)
T 3fwy_A 106 LKDVDFHPEELRPEDFVFE--GFNGVMCVEAGGPPAGTG--CGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA 181 (314)
T ss_dssp HHHTTSCGGGCCHHHHCEE--CGGGCEEEECCCCCTTCS--CTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG
T ss_pred HhhhccccccccHhHheee--cCCCeEEEeCCCCcccch--hhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH
Confidence 21 11222233322 336788888776543322 222333333444433 2456799999999998755443
Q ss_pred HHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCC
Q 047623 184 TAITPANEAVLVTTPDITSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPED 259 (340)
Q Consensus 184 ~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d 259 (340)
+++..||.+|||++++..++.++.++++.++.. +.+..++|+|+..... ..+++.+.++.++++.||.+
T Consensus 182 ~al~aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~~-------~v~~~a~~~~~~~lg~IP~d 254 (314)
T 3fwy_A 182 APLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATD-------EVDRFCKETNFRRLAHMPDL 254 (314)
T ss_dssp GGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCCH-------HHHHHHHHHTCCEEEEECCC
T ss_pred hHHhhCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCchh-------HHHHHHHHhCCeEEEEecCc
Confidence 678899999999999999999999999888753 2345678999865542 25678889999999999999
Q ss_pred hHHHHHHhcCCceEeeCCCCHHHHH---HHHHHHHHHhccccchhhhccCccccchhhhhc
Q 047623 260 SEVIRSTNRGYPLVLNKPPTLAGLA---FEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFG 317 (340)
Q Consensus 260 ~~~~~a~~~g~~v~~~~~~s~~~~~---~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (340)
..+.++...|+|+++++|+|+.+++ |++||++|+++.... .+...+.+.+|+.|+
T Consensus 255 ~~Vr~a~~~G~pvv~~~P~S~~a~aa~~Y~~LA~eil~~~~~~---~p~pl~d~el~~l~g 312 (314)
T 3fwy_A 255 DAIRRSRLKKKTLFEMDEDQDVLAARAEYIRLAESLWRGLDPI---DPHSLPDRDIFELLG 312 (314)
T ss_dssp HHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCHHHHHHHTT
T ss_pred hHHHHHHHcCCceEEECCCChhhHHHHHHHHHHHHHHhCCCCC---CCCCCCHHHHHHhhC
Confidence 9999999999999999999976555 999999999987543 224455677777665
No 9
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=100.00 E-value=1.6e-33 Score=252.62 Aligned_cols=255 Identities=18% Similarity=0.266 Sum_probs=192.2
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC---Cccccceeccc
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD---CRLDQALVRDK 126 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~ 126 (340)
|++|+| ++|||+||||+|+|||..|+++|++|++||+|++.+....+++... ..++.+++.+. ..+++.+. .
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~i~--~ 75 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLA--QKSVLDTLREEGEDVELDSILK--E 75 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCC--CCCHHHHHHHHGGGCCHHHHCE--E
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCC--cccHHHHHhccCcCCCHHHhhc--c
Confidence 589999 5899999999999999999999999999999999777777776654 36788887653 34444443 2
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhH---HHHHHHHHHhccCCCCEEEEcCCCCCCH--HHHH-HHhcCCeEEEEeCCCh
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKAL---TWVVEALKSRQEGSPDFILIDCPAGIDA--GFIT-AITPANEAVLVTTPDI 200 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~~~-~l~~ad~viiv~~~~~ 200 (340)
..++++++|++....... ...... ..+++.+.. +.++|||||||||+.... .... ....||.+++|+.++.
T Consensus 76 ~~~~l~vl~~~~~~~~~~--~~~~~~~~~~~~~~~l~~-l~~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~ 152 (269)
T 1cp2_A 76 GYGGIRCVESGGPEPGVG--CAGRGIITSINMLEQLGA-YTDDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEM 152 (269)
T ss_dssp CGGGCEEEECCCCCTTSS--CHHHHHHHHHHHHHHTTC-CCTTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSH
T ss_pred CCCCeeEEeCCCchhhcc--ccCcchhhHHHHHHHHHh-hccCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCch
Confidence 348999999876543321 111111 123333322 356799999999986532 1111 2247999999999999
Q ss_pred hhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeC
Q 047623 201 TSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNK 276 (340)
Q Consensus 201 ~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~ 276 (340)
.++..+.++++.++.. +.+.+++|+|+++... .....+++.+.+|.++++.||++..+.++...|+|+.++.
T Consensus 153 ~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~----~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a~~~g~~v~~~~ 228 (269)
T 1cp2_A 153 MALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EYELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYD 228 (269)
T ss_dssp HHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CHHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTSCHHHHC
T ss_pred hhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcch----hHHHHHHHHHHcCCcccccCCCCcHHHHHHHcCCceEEEC
Confidence 9999999988888753 3456799999997542 2234667788899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhccc
Q 047623 277 PPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLG 319 (340)
Q Consensus 277 ~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (340)
|+++++++|.+++++|.++.... .+.+.+.+.++.||+++
T Consensus 229 ~~s~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~ 268 (269)
T 1cp2_A 229 PTCEQAEEYRELARKVDANELFV---IPKPMTQERLEEILMQY 268 (269)
T ss_dssp TTSHHHHHHHHHHHHHHHCCCCB---CCCCCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhccccC---CCCCCCHHHHHHHHHhc
Confidence 99999999999999999987643 24566667777777653
No 10
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=100.00 E-value=7.9e-33 Score=248.00 Aligned_cols=234 Identities=17% Similarity=0.219 Sum_probs=168.4
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc------CCCcccHHHhhcCCCccc
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE------NRVNYTVVEVLNGDCRLD 119 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~------~~~~~~l~~~l~~~~~~~ 119 (340)
..+++++|+|+|+|||+||||+|+|||..|+ +|++|++||+|++ +++..+++.. .....++.+++.+...++
T Consensus 23 ~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 100 (267)
T 3k9g_A 23 DNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ-ASITSYFYEKIEKLGINFTKFNIYEILKENVDID 100 (267)
T ss_dssp ---CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT-CHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGG
T ss_pred CCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC-CCHHHHhhccccccccCcccccHHHHhcCCCCHH
Confidence 4577899999999999999999999999999 9999999999999 4554444221 123578999999888888
Q ss_pred cceecccccCceeEeecCCCCCCCCCCc---chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEe
Q 047623 120 QALVRDKRWSNFELLCISKPRSKLPLGF---GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVT 196 (340)
Q Consensus 120 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~ 196 (340)
+.+.+.. ++++++|++.......... ....+..+++.+ ++.||+||||+||+.+.....++..||.+++|+
T Consensus 101 ~~i~~~~--~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l----~~~yD~viiD~pp~~~~~~~~~l~~aD~vivv~ 174 (267)
T 3k9g_A 101 STIINVD--NNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTL----YYKYDYIVIDTNPSLDVTLKNALLCSDYVIIPM 174 (267)
T ss_dssp GGCEEEE--TTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTT----CTTCSEEEEEECSSCSHHHHHHHTTCSEEEEEE
T ss_pred HhhccCC--CCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHh----hcCCCEEEEECcCCccHHHHHHHHHCCeEEEEe
Confidence 8777654 8999999887654433222 233344444433 458999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCC-ceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEee
Q 047623 197 TPDITSLRDADRVTGLLECDGIR-DIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLN 275 (340)
Q Consensus 197 ~~~~~s~~~~~~~~~~l~~~~~~-~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~ 275 (340)
.++..++..+.++++.++..+.+ .+++|+|++.+.. .... ..+.+.+ +.++++.||+++.+.++...|.++..
T Consensus 175 ~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-~~~~--~~~~l~~--~~~~~~~Ip~~~~~~~a~~~g~~~~~- 248 (267)
T 3k9g_A 175 TAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-THKT--LFEILKT--KDRFLGTISEREDLNRRIAENNNFDL- 248 (267)
T ss_dssp ESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-SCCH--HHHHHTT--STTEEEEEEC-----------------
T ss_pred CCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-hHHH--HHHHHhc--CcccceecCcHHHHHHHHHhcCCcch-
Confidence 99999999999999999887543 5789999995432 1111 1222222 78899999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHHHhc
Q 047623 276 KPPTLAGLAFEQAAWRLVEQ 295 (340)
Q Consensus 276 ~~~s~~~~~~~~la~~i~~~ 295 (340)
.+++.++|.+++++|+++
T Consensus 249 --~~~~~~~~~~i~~~l~~~ 266 (267)
T 3k9g_A 249 --NKDYIKEYENILEIFLKK 266 (267)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHhh
Confidence 478999999999999875
No 11
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=100.00 E-value=5.8e-32 Score=232.62 Aligned_cols=200 Identities=16% Similarity=0.169 Sum_probs=165.3
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
|++|+|+|+|||+||||+|+|||..|+++|++|++||+|++ +++..+++... .
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~-~~~~~~~~~~~--------------------------~ 53 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ-MSLTNWSKAGK--------------------------A 53 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CHHHHHHTTSC--------------------------C
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC-CCHHHHHhcCC--------------------------C
Confidence 68999999999999999999999999999999999999998 66666554321 2
Q ss_pred ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623 130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRV 209 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~ 209 (340)
++++++.+. ..+..+++.+.+ +||+||||+||+.+.....++..||.+++|+.++..+ ..+.++
T Consensus 54 ~~~~~~~~~-----------~~l~~~l~~l~~----~yD~viiD~~~~~~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~ 117 (206)
T 4dzz_A 54 AFDVFTAAS-----------EKDVYGIRKDLA----DYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLD-FSAAGS 117 (206)
T ss_dssp SSEEEECCS-----------HHHHHTHHHHTT----TSSEEEEECCSSSSHHHHHHHHHCSEEEEEECSCTTT-HHHHHH
T ss_pred CCcEEecCc-----------HHHHHHHHHhcC----CCCEEEEECCCCCCHHHHHHHHHCCEEEEEecCCHHH-HHHHHH
Confidence 355555432 344455555544 7999999999999988899999999999999999999 999999
Q ss_pred HHHHHhcCC----CceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecCChHHHHHHhcCCceEeeCCCCHHHHH
Q 047623 210 TGLLECDGI----RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSEVIRSTNRGYPLVLNKPPTLAGLA 284 (340)
Q Consensus 210 ~~~l~~~~~----~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~ 284 (340)
++.++..+. ..+++|+|+++++.... ....+..+.+|.+++ +.||++..+.++...|.|+.+ .|+++++++
T Consensus 118 ~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~---~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v~~-~~~s~~~~~ 193 (206)
T 4dzz_A 118 VVTVLEAQAYSRKVEARFLITRKIEMATML---NVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFE-SSDGAAKGE 193 (206)
T ss_dssp HHHHHTTSCGGGCCEEEEEECSBCTTEEEE---HHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCGGG-SSCHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEEEeccCCCchHH---HHHHHHHHHcCCceeeccccccHHHHHHHHcCCCccc-CCchHHHHH
Confidence 999986542 24599999998764322 234555666899988 899999999999999999999 999999999
Q ss_pred HHHHHHHHHhcc
Q 047623 285 FEQAAWRLVEQD 296 (340)
Q Consensus 285 ~~~la~~i~~~~ 296 (340)
|.+|+++|+++.
T Consensus 194 ~~~la~~i~~~l 205 (206)
T 4dzz_A 194 IEILTKEIVRIF 205 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 12
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=100.00 E-value=3.2e-32 Score=241.27 Aligned_cols=230 Identities=21% Similarity=0.243 Sum_probs=176.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCc------ccHHHhhcCC----------
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVN------YTVVEVLNGD---------- 115 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~------~~l~~~l~~~---------- 115 (340)
.|+| |+|||+||||+|+|||..||++|+||++||+|++ ++++.+||...... .++.+++.+.
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILN 79 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSS
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccC
Confidence 3788 7899999999999999999999999999999998 99999999875421 2244444432
Q ss_pred Cccccceec-ccccCceeE-eecCCCCCCCCCCcch--hhHHHHHHHH-HHhccCCCCEEEEcCCCCCCHHHHHHHhcCC
Q 047623 116 CRLDQALVR-DKRWSNFEL-LCISKPRSKLPLGFGG--KALTWVVEAL-KSRQEGSPDFILIDCPAGIDAGFITAITPAN 190 (340)
Q Consensus 116 ~~~~~~~~~-~~~~~~l~~-l~~~~~~~~~~~~~~~--~~~~~l~~~l-~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad 190 (340)
..++..... .....++++ ++.+............ ..+..+++.+ ++ +||+|||||||+.+.....++..||
T Consensus 80 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~----~yD~viiD~pp~~~~~~~~~l~~aD 155 (254)
T 3kjh_A 80 PKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLD----KKEAVVMDMGAGIEHLTRGTAKAVD 155 (254)
T ss_dssp CCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHT----CCSEEEEEECTTCTTCCHHHHTTCS
T ss_pred CchhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccC----CCCEEEEeCCCcccHHHHHHHHHCC
Confidence 111111000 011245666 6555433222222222 2355666666 44 8999999999999888889999999
Q ss_pred eEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhC-CceeEEecCChHHHHHHhcC
Q 047623 191 EAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLG-LALLGVIPEDSEVIRSTNRG 269 (340)
Q Consensus 191 ~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g-~~v~~~Ip~d~~~~~a~~~g 269 (340)
.+++|+.++..++..+.++.+.+...+...+++|+|+++++. ..+++.+.++ .++.+.||++..+.++...|
T Consensus 156 ~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~~-------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g 228 (254)
T 3kjh_A 156 MMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIK-------EEKLIKKHLPEDKILGIIPYNELFIELSLKG 228 (254)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCHH-------HHHHHHHHSCGGGEEEEEECCHHHHSCSSSS
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCChh-------HHHHHHHHhcCCcccccccCcHHHHHHHhCC
Confidence 999999999999999999999888888888999999998542 2556778887 77889999999999999999
Q ss_pred CceEeeCCCCHHHHHHHHHHHHHHhcc
Q 047623 270 YPLVLNKPPTLAGLAFEQAAWRLVEQD 296 (340)
Q Consensus 270 ~~v~~~~~~s~~~~~~~~la~~i~~~~ 296 (340)
+|+.++.| +++++|.+|+++|.++.
T Consensus 229 ~~~~~~~~--~~~~~~~~la~~l~~~~ 253 (254)
T 3kjh_A 229 EEIWQSTN--PAFVNLHDIYQKLRLEV 253 (254)
T ss_dssp CCTTSTTS--TTHHHHHHHHHHHHHHH
T ss_pred CccccCCc--HHHHHHHHHHHHHHhhc
Confidence 99988875 68999999999998875
No 13
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.98 E-value=6.1e-32 Score=244.00 Aligned_cols=221 Identities=16% Similarity=0.164 Sum_probs=184.1
Q ss_pred CCCCccccccCCC-----C--------------CCCCCCCCCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHH
Q 047623 5 IPSPTIQFKPLFP-----S--------------KTIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKT 65 (340)
Q Consensus 5 ~~~p~~g~~p~~~-----~--------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKT 65 (340)
+..|++|.||..+ . .++....|.+...+..+.++.++........+++|+|+|+|||+|||
T Consensus 28 ~g~pvlg~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKT 107 (286)
T 3la6_A 28 HGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMT 107 (286)
T ss_dssp TTCCEEEEEECCHHHHHTTC----------CCCSCHHHHCTTCHHHHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHH
T ss_pred CCCCeEEEecCchhhhhhhhccccccccccccCceEEEcCCCCHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHH
Confidence 5789999999753 1 11223467777778778887777665567778999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecCCCCCCCCC
Q 047623 66 TTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPL 145 (340)
Q Consensus 66 t~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 145 (340)
|+|+|||..||+.|++|++||+|++.++++.+|+.++. .++.+++.+...+++.+.... .++++++|++........
T Consensus 108 tva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~--~gl~~~l~~~~~~~~~i~~~~-~~~l~vl~~g~~~~~~~e 184 (286)
T 3la6_A 108 FVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNV--NGLSEILIGQGDITTAAKPTS-IAKFDLIPRGQVPPNPSE 184 (286)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCT--TCHHHHHHTSSCTTTTCEECS-STTEEEECCCSCCSCHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCC--CCHHHHccCCCCHHHheeccC-CCCEEEEeCCCCCCCHHH
Confidence 99999999999999999999999999999999998765 789999999888887776643 489999999887655444
Q ss_pred CcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH-HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEE
Q 047623 146 GFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG-FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMV 224 (340)
Q Consensus 146 ~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~-~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vv 224 (340)
.+....+..+++.+++ +||+||||+||..... ...+...||.+++|+.++..+...+.+.++.++..+.+.+++|
T Consensus 185 ll~~~~l~~ll~~l~~----~yD~VIIDtpp~~~~~da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvV 260 (286)
T 3la6_A 185 LLMSERFAELVNWASK----NYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVI 260 (286)
T ss_dssp HHTSHHHHHHHHHHHH----HCSEEEEECCCTTTCTHHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HhchHHHHHHHHHHHh----CCCEEEEcCCCCcchHHHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 4556778888888887 6999999999987544 3445567999999999999999999999999999999999999
Q ss_pred EecccCCc
Q 047623 225 VNRVRTDM 232 (340)
Q Consensus 225 iN~~~~~~ 232 (340)
+|+++++.
T Consensus 261 lN~v~~~~ 268 (286)
T 3la6_A 261 LNSIFRRA 268 (286)
T ss_dssp EEEECCCC
T ss_pred EcCccccc
Confidence 99998754
No 14
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.97 E-value=1e-31 Score=241.02 Aligned_cols=222 Identities=18% Similarity=0.218 Sum_probs=177.8
Q ss_pred CCCCCccccccCCCCC--------CCCCCCCCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 4 LIPSPTIQFKPLFPSK--------TIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 4 ~~~~p~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
.++.|+||.||..+.. ......|.+...+..+.++.+.......+.+++|+|+|+|||+||||+|+|||..|
T Consensus 28 ~~~~p~lg~iP~~~~~~~~~~~~~~~~~~~~~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~l 107 (271)
T 3bfv_A 28 ELGLPVLGSIQKFNMTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAY 107 (271)
T ss_dssp HHCCCEEEEEECCCTTTTTSCSSSCHHHHCTTSHHHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred HhCCCeEEEecccccccccccccceeeecCCCCHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 3578999999986431 11123566666677777776665555567789999999999999999999999999
Q ss_pred HHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecCCCCCCCCCCcchhhHHHH
Q 047623 76 ARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWV 155 (340)
Q Consensus 76 a~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l 155 (340)
|+.|+||++||+|++.++++.+|+.++. .++.+++.+...+++.+.... .++++++|++.........+....+..+
T Consensus 108 A~~G~rVLLID~D~~~~~l~~~~~~~~~--~gl~~~L~~~~~l~~~i~~~~-~~~l~vl~~g~~~~~~~ell~~~~l~~l 184 (271)
T 3bfv_A 108 AQAGYKTLIVDGDMRKPTQHYIFNLPNN--EGLSSLLLNWSTYQDSIISTE-IEDLDVLTSGPIPPNPSELITSRAFANL 184 (271)
T ss_dssp HHTTCCEEEEECCSSSCCHHHHTTCCCS--SSHHHHHTTSSCHHHHEEECS-STTEEEECCCSCCSCHHHHHTSHHHHHH
T ss_pred HhCCCeEEEEeCCCCCccHHHHcCCCCC--CCHHHHhCCCCCHHHcEEeCC-CCCEEEEECCCCCCCHHHHhChHHHHHH
Confidence 9999999999999999999999998764 789999998888777766543 4899999988765443333445667788
Q ss_pred HHHHHHhccCCCCEEEEcCCCCCCHH-HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 156 VEALKSRQEGSPDFILIDCPAGIDAG-FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 156 ~~~l~~~~~~~~D~VIiD~~~~~~~~-~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
++.+++ +||+||||+||..... ...+...+|.+++|+.++..++..+.+.++.++..+.+.+++|+|+++...
T Consensus 185 l~~l~~----~yD~VIIDtpp~~~~~d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 185 YDTLLM----NYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHHHHH----HCSEEEEECCCTTTCSHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred HHHHHh----CCCEEEEeCCCCchHHHHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 888877 6999999999976543 334456799999999999999999999999999888888999999998753
No 15
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.97 E-value=1.7e-29 Score=225.75 Aligned_cols=219 Identities=22% Similarity=0.267 Sum_probs=162.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
+++++|+|+|+|||+||||+|+|||..|+++|++|++||+|++.+++..+++..... ++.....+.... ..
T Consensus 16 ~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~------~~~~~~~~~~~~---~~ 86 (262)
T 2ph1_A 16 KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNAR------IAVSAEGLEPVL---TQ 86 (262)
T ss_dssp TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCC------CEEETTEEECEE---CT
T ss_pred cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCcc------ccccccCccccc---cC
Confidence 567999999999999999999999999999999999999999977898999887542 111111111111 13
Q ss_pred cCceeEeecCCCCCCCCCC--cchhhHHHHHHHHHHhcc-CCCCEEEEcCCCCCCHHHHH--HHhcCCeEEEEeCCChhh
Q 047623 128 WSNFELLCISKPRSKLPLG--FGGKALTWVVEALKSRQE-GSPDFILIDCPAGIDAGFIT--AITPANEAVLVTTPDITS 202 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~-~~~D~VIiD~~~~~~~~~~~--~l~~ad~viiv~~~~~~s 202 (340)
.++++++|++......... .........++.+.+.+. ++||||||||||+.+..... .+..+|.+++|+.++..+
T Consensus 87 ~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s 166 (262)
T 2ph1_A 87 KYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELT 166 (262)
T ss_dssp TTCCEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCC
T ss_pred CCCeEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccch
Confidence 4789999887654332211 111222233333333344 68999999999998754433 334799999999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecccCCcc----ccc--ccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEee
Q 047623 203 LRDADRVTGLLECDGIRDIKMVVNRVRTDMI----KGE--DMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLN 275 (340)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~----~~~--~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~ 275 (340)
+..+.++++.++..+.+.+++|+|+++.... ... .....+++.+.+|.++++.||++..+.++...|+|+...
T Consensus 167 ~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~~~~~ 245 (262)
T 2ph1_A 167 AVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKLADSGRIEEYE 245 (262)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEEECCBCHHHHHHHHTTCGGGCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEEEeeCchHHHHhccCCceeecc
Confidence 9999999999988888889999999874210 000 112467888999999999999999999999999998643
No 16
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.97 E-value=2.2e-30 Score=235.72 Aligned_cols=237 Identities=18% Similarity=0.157 Sum_probs=177.0
Q ss_pred CCEEEEEEc--CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhcc----CCcCCCcccHHHhhcCCCccccce
Q 047623 49 TPRVVVITS--GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLL----GLENRVNYTVVEVLNGDCRLDQAL 122 (340)
Q Consensus 49 ~~~iI~v~s--~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~----~~~~~~~~~l~~~l~~~~~~~~~~ 122 (340)
+.++|+|++ +|||+||||+|+|||..|+++|++|++||+|++ +++..++ +.+. +..++.+++.+.. ..+.+
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q-~~~~~~l~~~~~~~~-~~~~l~~~l~~~~-~~~~~ 109 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ-ATLTKDLAKTFKVEL-PRVNFYEGLKNGN-LASSI 109 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT-CHHHHHHTTTSCCCC-CSSCHHHHHHHTC-CGGGC
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC-CCHHHHHHHhccCCC-CcccHHHHHhcCC-hhhhh
Confidence 356888888 899999999999999999999999999999999 5554333 3332 2367878776553 33334
Q ss_pred ecccccCceeEeecCCCCCCCCCCc-------chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEE
Q 047623 123 VRDKRWSNFELLCISKPRSKLPLGF-------GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLV 195 (340)
Q Consensus 123 ~~~~~~~~l~~l~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv 195 (340)
.+. .++++++|++.......... ....+..+++. ++++||||||||||+.+....+++..||.+++|
T Consensus 110 ~~~--~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~----l~~~yD~IiiD~pp~~~~~~~~~l~~aD~viiv 183 (298)
T 2oze_A 110 VHL--TDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAP----LKSDYDLIIIDTVPTPSVYTNNAIVASDYVMIP 183 (298)
T ss_dssp EES--SSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGG----GGGGCSEEEEEECSSCSHHHHHHHHHCSEEEEE
T ss_pred ccc--CCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHH----HhcCCCEEEEECCCCccHHHHHHHHHCCeEEEE
Confidence 333 38999999876543211000 01123333333 345799999999999999888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHh------cCCCceEEEEecccCCcccccccccHHHHHHHhCC--cee-EEecCChHHHHHH
Q 047623 196 TTPDITSLRDADRVTGLLEC------DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGL--ALL-GVIPEDSEVIRST 266 (340)
Q Consensus 196 ~~~~~~s~~~~~~~~~~l~~------~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~--~v~-~~Ip~d~~~~~a~ 266 (340)
+.++..++..+.++++.+.. .+.+.+++|+|+++.+... .....+++.+.++. +++ ..||++..+.++.
T Consensus 184 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~Ip~~~~~~~a~ 261 (298)
T 2oze_A 184 LQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSAT--IKSNLEELYKQHKEDNLVFQNIIKRSNKVSTWS 261 (298)
T ss_dssp ECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHH--HHHHHHHHHHHTTTTCCBCSSCEECCHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHH--HHHHHHHHHHHhccccccccccccccHHHHHHH
Confidence 99999999999998888875 2556789999999876421 12235677778875 555 6899999999999
Q ss_pred hcCCceEeeCCCCHHHHHHHHHHHHHHhccc
Q 047623 267 NRGYPLVLNKPPTLAGLAFEQAAWRLVEQDS 297 (340)
Q Consensus 267 ~~g~~v~~~~~~s~~~~~~~~la~~i~~~~~ 297 (340)
..|+|+.+ ...++++++|.+|+++|+++..
T Consensus 262 ~~G~~v~~-~~~~~~~~~~~~la~ei~~~~~ 291 (298)
T 2oze_A 262 KNGITEHK-GYDKKVLSMYKNVFFEMLERII 291 (298)
T ss_dssp HHCCCSSS-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCChhh-hcChHHHHHHHHHHHHHHHHHH
Confidence 99999886 2234689999999999988753
No 17
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.97 E-value=2.3e-30 Score=241.64 Aligned_cols=247 Identities=17% Similarity=0.148 Sum_probs=157.2
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcC-------CCc----------ccHHHhh
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLEN-------RVN----------YTVVEVL 112 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~-------~~~----------~~l~~~l 112 (340)
||+|+|+|+||||||||+|+|||..||++|+||++||+|++.+....+++... ... .++.+++
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l 80 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIF 80 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHH
Confidence 68999999999999999999999999999999999999999554455544321 111 4566665
Q ss_pred c----CCCcccc--ceecccccCceeEeecCCCCCCCCCCcch----------------hhHHHHHHHHHHhccCCCCEE
Q 047623 113 N----GDCRLDQ--ALVRDKRWSNFELLCISKPRSKLPLGFGG----------------KALTWVVEALKSRQEGSPDFI 170 (340)
Q Consensus 113 ~----~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~----------------~~~~~l~~~l~~~~~~~~D~V 170 (340)
. +...+.+ .+.. ...++++++|++.........+.. ..+..+++.+.+ ...||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~--~~~yD~V 157 (361)
T 3pg5_A 81 VPLREGESQIAAEITPMR-SERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMER--DDRYDVI 157 (361)
T ss_dssp HHHHTTCSSCCCCCCCBC-CTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHH--TTCCSEE
T ss_pred HHHhcCCCChhhcceeec-cCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhh--ccCCCEE
Confidence 4 5555544 1222 234799999988765443221111 224455555543 2269999
Q ss_pred EEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhc--------------------C-------------
Q 047623 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECD--------------------G------------- 217 (340)
Q Consensus 171 IiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~--------------------~------------- 217 (340)
||||||+++....+++..||.+|+|+.++..++.++.++++.++.. .
T Consensus 158 IID~pP~l~~~~~~aL~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 237 (361)
T 3pg5_A 158 FFDVGPSLGPFNRTVLLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGGF 237 (361)
T ss_dssp EEECCSCCSHHHHHHHTTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTSS
T ss_pred EEECCCCcCHHHHHHHHHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccccccccccc
Confidence 9999999999999999999999999999999999999888888643 1
Q ss_pred ----CCceEEEEecccCCcccc----c--ccccHHHHHHHh-----------CCceeEEecCChH-HHHHHhcCCceEee
Q 047623 218 ----IRDIKMVVNRVRTDMIKG----E--DMMSVLDIQEML-----------GLALLGVIPEDSE-VIRSTNRGYPLVLN 275 (340)
Q Consensus 218 ----~~~~~vviN~~~~~~~~~----~--~~~~~~~i~~~~-----------g~~v~~~Ip~d~~-~~~a~~~g~~v~~~ 275 (340)
.+.+|+|+|+++.+.... . ...-.+++.... ....++.||.... +..+...|+|++..
T Consensus 238 ~~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~~~~Pi~~l 317 (361)
T 3pg5_A 238 DGEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQDVHAPIMEL 317 (361)
T ss_dssp SSSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC-------------------
T ss_pred cccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHHHCCCeEEC
Confidence 556999999999865322 1 111123344334 3445789998777 56999999999999
Q ss_pred CC-----------CCHHHHHHHHHHHHHHhccccc
Q 047623 276 KP-----------PTLAGLAFEQAAWRLVEQDSMK 299 (340)
Q Consensus 276 ~~-----------~s~~~~~~~~la~~i~~~~~~~ 299 (340)
.+ ...+.+.|.+||.+|+++.+.+
T Consensus 318 ~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~ 352 (361)
T 3pg5_A 318 SSSDRVRGAQINQRNAYAEKINSVAANVYKALFPN 352 (361)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHCCC
T ss_pred chhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 76 3468999999999999988654
No 18
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.97 E-value=4.1e-31 Score=239.24 Aligned_cols=229 Identities=17% Similarity=0.106 Sum_probs=166.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
|+++|+|+|+|||+||||+|+|||..|+++|++|++||+|+..+++..+++.... +.+... . ...
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~----~~~~~~------~-----~~~ 67 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRA----WLDNKK------I-----ELP 67 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHH----HHHHHT------C-----CCC
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChh----HhHhcc------c-----cCC
Confidence 6789999999999999999999999999999999999999933888888865431 111110 0 011
Q ss_pred Cce-eEeecCC-CCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623 129 SNF-ELLCISK-PRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA 206 (340)
Q Consensus 129 ~~l-~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~ 206 (340)
.++ +++|+.. .............+..+++.+.+ +||||||||||+.+.....++..||.+|+|+.++..++..+
T Consensus 68 ~~l~~vl~~~~~~~~~~~~~~~~~~l~~~l~~l~~----~yD~viiD~p~~~~~~~~~~l~~aD~viiv~~~~~~~~~~~ 143 (286)
T 2xj4_A 68 EPLALNLSDNDVALAERPEEEQVAGFEAAFARAMA----ECDFILIDTPGGDSAITRMAHGRADLVVTPMNDSFVDFDML 143 (286)
T ss_dssp CCEEECSSSCHHHHTTSCHHHHHHHHHHHHHHHHH----HCSEEEEECCSSCCHHHHHHHHTCSEEEEEEESSHHHHTTT
T ss_pred CchheEeeCCCCCCcChhhhhhHHHHHHHHHHHHh----cCCEEEEcCCCCccHHHHHHHHHCCEEEEEEcCCccHHHHH
Confidence 456 6776522 11111111223345556666655 69999999999999989999999999999999999998887
Q ss_pred HHHHHH-------------H---Hh------cCC-CceEEEEecccCCc-ccccc-cccHHHHHHHhCCceeEEecCChH
Q 047623 207 DRVTGL-------------L---EC------DGI-RDIKMVVNRVRTDM-IKGED-MMSVLDIQEMLGLALLGVIPEDSE 261 (340)
Q Consensus 207 ~~~~~~-------------l---~~------~~~-~~~~vviN~~~~~~-~~~~~-~~~~~~i~~~~g~~v~~~Ip~d~~ 261 (340)
.++++. + +. ... .++++|+|++++.. ..... ...++++.+.+|..+.+.||++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~Ip~~~~ 223 (286)
T 2xj4_A 144 GTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLATTEARNRKRLEDRLNALAKRVGFRIGPGLRDRVI 223 (286)
T ss_dssp EEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEEEEECCTTCCGGGHHHHHHHHHHHHHHHCCEEEECCCCCHH
T ss_pred HHHHHHhhhccccchhhhhhhcchhhhhhccCCccccEEEEEeeecCCCcchhHHHHHHHHHHHHHcCCccCCCCCchHH
Confidence 554444 4 31 212 35789999998764 21111 111222223378877789999999
Q ss_pred HHHHHhcCCceEeeCC----------CCHHHHHHHHHHHHHHhcc
Q 047623 262 VIRSTNRGYPLVLNKP----------PTLAGLAFEQAAWRLVEQD 296 (340)
Q Consensus 262 ~~~a~~~g~~v~~~~~----------~s~~~~~~~~la~~i~~~~ 296 (340)
+.++...|+|+.++.| +++++++|.+|+++|...+
T Consensus 224 ~~~a~~~g~~v~~~~~~~~~~~~~~~~s~~~~~~~~la~~l~~~~ 268 (286)
T 2xj4_A 224 YRELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMHSLGLSA 268 (286)
T ss_dssp HHHHGGGTCCGGGCBTTBCCSCCCSTTHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHcCCCHHHhCccccccccccccchHHHHHHHHHHHhCccc
Confidence 9999999999999988 7899999999999997654
No 19
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.97 E-value=7.7e-30 Score=220.40 Aligned_cols=196 Identities=20% Similarity=0.198 Sum_probs=158.4
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN 130 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 130 (340)
++|+|+|+|||+||||+|+|||..|+++| +|++||+|++ +++..+++. ++ + +.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q-~~~~~~~~~-~~--------------l----------~~ 53 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN-RSATGWGKR-GS--------------L----------PF 53 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT-CHHHHHHHH-SC--------------C----------SS
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC-CCHHHHhcC-CC--------------C----------Cc
Confidence 48999999999999999999999999999 9999999999 666655543 10 0 10
Q ss_pred eeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCC-CCHHHHHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623 131 FELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAG-IDAGFITAITPANEAVLVTTPDITSLRDADRV 209 (340)
Q Consensus 131 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~-~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~ 209 (340)
++++.. .++.+.+ .|||||||+||+ .+.....++..||.+++|+.++..++..+.++
T Consensus 54 -~vi~~~-----------------~l~~l~~----~yD~viiD~p~~~~~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~ 111 (209)
T 3cwq_A 54 -KVVDER-----------------QAAKYAP----KYQNIVIDTQARPEDEDLEALADGCDLLVIPSTPDALALDALMLT 111 (209)
T ss_dssp -EEEEGG-----------------GHHHHGG----GCSEEEEEEECCCSSSHHHHHHHTSSEEEEEECSSHHHHHHHHHH
T ss_pred -ceeCHH-----------------HHHHhhh----cCCEEEEeCCCCcCcHHHHHHHHHCCEEEEEecCCchhHHHHHHH
Confidence 333321 3344444 799999999999 88888899999999999999999999999999
Q ss_pred HHHHHhcCCCceEEEEecccCCc-ccccccccHHHHHHHhCCcee-EEecCChHHHHHHhcCCceEee-CCCC-HHHHHH
Q 047623 210 TGLLECDGIRDIKMVVNRVRTDM-IKGEDMMSVLDIQEMLGLALL-GVIPEDSEVIRSTNRGYPLVLN-KPPT-LAGLAF 285 (340)
Q Consensus 210 ~~~l~~~~~~~~~vviN~~~~~~-~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~~~~a~~~g~~v~~~-~~~s-~~~~~~ 285 (340)
++.++.....++++|+|+++++. .... ...+..+.+|.+++ +.||++..+.++...|+|+.++ .|++ +++++|
T Consensus 112 ~~~l~~~~~~~~~vv~N~~~~~~~~~~~---~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v~~~~~p~~~~~~~~~ 188 (209)
T 3cwq_A 112 IETLQKLGNNRFRILLTIIPPYPSKDGD---EARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVVSEVSDSKAGIAWSDY 188 (209)
T ss_dssp HHHHHHTCSSSEEEEECSBCCTTSCHHH---HHHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCTTTSSSTTHHHHHHHH
T ss_pred HHHHHhccCCCEEEEEEecCCccchHHH---HHHHHHHHcCCchhhccCCCcHHHHHHHHcCCCHHHhCCccchhHHHHH
Confidence 99998743335899999998764 2211 23333444888888 7999999999999999999999 8999 999999
Q ss_pred HHHHHHHHhcccc
Q 047623 286 EQAAWRLVEQDSM 298 (340)
Q Consensus 286 ~~la~~i~~~~~~ 298 (340)
.+++++|+++...
T Consensus 189 ~~l~~el~~~~~~ 201 (209)
T 3cwq_A 189 KATGKEIVEEILT 201 (209)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987543
No 20
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.97 E-value=3.4e-30 Score=234.33 Aligned_cols=220 Identities=15% Similarity=0.146 Sum_probs=175.1
Q ss_pred CCCccccccCCCCC---------C---------------CCCCCCCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCC
Q 047623 6 PSPTIQFKPLFPSK---------T---------------IKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGG 61 (340)
Q Consensus 6 ~~p~~g~~p~~~~~---------~---------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGG 61 (340)
+.|+||.||..+.. . .....|.+...+..+.++.++........+++|+|+|+|||
T Consensus 36 g~pvlg~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG 115 (299)
T 3cio_A 36 GISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPD 115 (299)
T ss_dssp TCCEEEEEECCSHHHHC-----------CCCCCCCCSCCHHHHSTTCHHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSS
T ss_pred CCCEEEEecCccchhhhhhhhccccccccccccccccceeeecCCCCHHHHHHHHHHHHHHHhccCCCCeEEEEECCCCC
Confidence 78999999976420 0 01124555556666666666554445567799999999999
Q ss_pred CcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecCCCCC
Q 047623 62 VGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRS 141 (340)
Q Consensus 62 vGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 141 (340)
+||||+|+|||..||+.|+||++||+|++.++++.+|+..+. .++.+++.+...+++.+.... .++++++|++....
T Consensus 116 ~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~--~gl~~~L~~~~~l~~~i~~~~-~~~l~vl~~g~~~~ 192 (299)
T 3cio_A 116 SGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNE--HGLSEYLAGKDELNKVIQHFG-KGGFDVITRGQVPP 192 (299)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCS--SSHHHHHTTSSCHHHHCEEET-TTTEEEECCCSCCS
T ss_pred CChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCC--CCHHHHCcCCCCHHHhhhccC-CCCEEEEECCCCCC
Confidence 999999999999999999999999999988999999998764 689999998888877766543 48999999877654
Q ss_pred CCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH-HHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCc
Q 047623 142 KLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF-ITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRD 220 (340)
Q Consensus 142 ~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~-~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~ 220 (340)
.....+....+..+++.+++ +||+||||+||...... ..+...+|.+++|+.++..+...+.+.++.++..+.+.
T Consensus 193 ~~~ell~~~~l~~ll~~l~~----~yD~VIIDtpp~~~~~d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (299)
T 3cio_A 193 NPSELLMRDRMRQLLEWAND----HYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNI 268 (299)
T ss_dssp CHHHHHTSHHHHHHHHHHHH----HCSEEEEECCCTTTCTHHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCC
T ss_pred CHHHHhCHHHHHHHHHHHHh----CCCEEEEcCCCCchhHHHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCe
Confidence 43333445667788888877 69999999999875333 33446799999999999999999999999999988888
Q ss_pred eEEEEecccCCc
Q 047623 221 IKMVVNRVRTDM 232 (340)
Q Consensus 221 ~~vviN~~~~~~ 232 (340)
.++|+|+++...
T Consensus 269 ~GvVlN~~~~~~ 280 (299)
T 3cio_A 269 KGAILNGVIKRA 280 (299)
T ss_dssp CCEEEEECCCCC
T ss_pred EEEEEeCCccCC
Confidence 999999998764
No 21
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.96 E-value=5.9e-29 Score=235.36 Aligned_cols=244 Identities=18% Similarity=0.199 Sum_probs=170.3
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCCCCCchhccCCcCC---CcccHHHhhcCCC
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVGLRNLDLLLGLENR---VNYTVVEVLNGDC 116 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~~~~l~~~~~~~~~---~~~~l~~~l~~~~ 116 (340)
..+++++|+|+|+|||+||||+|+|||..||+ +|+||++||+|++ ++++.+|+.... ...++.+.+.+..
T Consensus 104 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q-~~l~~~l~~~~~~~~~~~~~~~~l~~~~ 182 (398)
T 3ez2_A 104 RYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ-SSATMFLSHKHSIGIVNATSAQAMLQNV 182 (398)
T ss_dssp TCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT-CHHHHHHSCHHHHSSCCSCHHHHHHHCC
T ss_pred CCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC-CChhHHhCCccccccccccHHHHHHhhc
Confidence 45678999999999999999999999999994 6999999999998 789999987642 2244555443221
Q ss_pred ----ccccceecccccCceeEeecCCCCCCC-------------CCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC
Q 047623 117 ----RLDQALVRDKRWSNFELLCISKPRSKL-------------PLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID 179 (340)
Q Consensus 117 ----~~~~~~~~~~~~~~l~~l~~~~~~~~~-------------~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~ 179 (340)
.+.+.+.. ...++++++|++...... ........+..+++.+ +++||||||||||+.+
T Consensus 183 ~~~~~~~~~i~~-~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l----~~~yD~ViiD~pp~~~ 257 (398)
T 3ez2_A 183 SREELLEEFIVP-SVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKL----KSDYDFILVDSGPHLD 257 (398)
T ss_dssp CHHHHHHHTCEE-CSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHH----TTTCSEEEEEECSCCS
T ss_pred cccccHHHHhhc-ccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHh----hccCCEEEEeCCCCcc
Confidence 22333332 345899999988653110 0000111122333443 4589999999999999
Q ss_pred HHHHHHHhcCCeEEEEeCCChhhHHHHH-------HHHHHHHhcC--CCceEEEEecccCCcccccccccHHHHHHHhCC
Q 047623 180 AGFITAITPANEAVLVTTPDITSLRDAD-------RVTGLLECDG--IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGL 250 (340)
Q Consensus 180 ~~~~~~l~~ad~viiv~~~~~~s~~~~~-------~~~~~l~~~~--~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~ 250 (340)
..+.+++..||.+++|+.|+..++..+. ++++.++..+ .+..++|.|+...... .......+.+++.+|.
T Consensus 258 ~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~-~~~~~~~~~l~~~~g~ 336 (398)
T 3ez2_A 258 AFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNK-ADHKYCHSLAKEVFGG 336 (398)
T ss_dssp HHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSC-HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCc-hhHHHHHHHHHHHhcc
Confidence 9999999999999999999888655443 3444444443 2334444443332211 1122235677888998
Q ss_pred cee-EEecCChHHHHHHhcCCceEeeCCCC---------HHHHHHHHHHHHHHhcc
Q 047623 251 ALL-GVIPEDSEVIRSTNRGYPLVLNKPPT---------LAGLAFEQAAWRLVEQD 296 (340)
Q Consensus 251 ~v~-~~Ip~d~~~~~a~~~g~~v~~~~~~s---------~~~~~~~~la~~i~~~~ 296 (340)
+++ +.||+++.+.++...|+|+.++.|++ .+...+.+++++|.++.
T Consensus 337 ~vl~~~IP~~~~i~~a~~~G~~v~~~~p~s~~~~~~~~~~a~~~~~~l~~~i~~~l 392 (398)
T 3ez2_A 337 DMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRI 392 (398)
T ss_dssp GBCSCCEECCHHHHHHHHTTCCTTTSCTTTCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeccchHHHHHHHhcCCCceeeccccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 89999999999999999999988763 46677888888887664
No 22
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.96 E-value=2.6e-29 Score=238.16 Aligned_cols=247 Identities=16% Similarity=0.192 Sum_probs=138.2
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHH------HCCCcEEEEecCCCCCCchhccCCcCCC---cccHHHhhcCC-
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLA------RLGFSVVAIDADVGLRNLDLLLGLENRV---NYTVVEVLNGD- 115 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la------~~g~~VlliD~D~~~~~l~~~~~~~~~~---~~~l~~~l~~~- 115 (340)
..+++++|+|+|+|||+||||+|+|||..|| ++|++|++||+|++ ++++.+|+..... ..++.+.+.+.
T Consensus 107 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~ 185 (403)
T 3ez9_A 107 IHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ-ASSTMFLDHTHSIGSILETAAQAMLNNL 185 (403)
T ss_dssp HSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS-SGGGSCC----------CCHHHHHHHTC
T ss_pred CCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC-CChhhhhCCCcccCcccccHHHHHHhcc
Confidence 4567899999999999999999999999999 67999999999998 6899999876531 12333433322
Q ss_pred ---CccccceecccccCceeEeecCCCCCCCCCC---------cchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHH
Q 047623 116 ---CRLDQALVRDKRWSNFELLCISKPRSKLPLG---------FGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFI 183 (340)
Q Consensus 116 ---~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---------~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~ 183 (340)
..+.+.+.. ...++++++|++......... ........+++.+.+.++++||||||||||+++..+.
T Consensus 186 ~~~~~~~~~i~~-~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~yD~VIID~pP~~~~~~~ 264 (403)
T 3ez9_A 186 DAETLRKEVIRP-TIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVADDYDFIFIDTGPHLDPFLL 264 (403)
T ss_dssp CHHHHHHTTSEE-CSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSGGGCSEEEEEECSSCSHHHH
T ss_pred cccccHHHHHhh-cccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHhhcCCEEEEECCCCccHHHH
Confidence 123333333 345899999988653110000 0001111233333333455899999999999999999
Q ss_pred HHHhcCCeEEEEeCCChhhHHHHH-------HHHHHHHhcCC--Cc--eEEEEecccCCcccccccccHHHHHHHhCCce
Q 047623 184 TAITPANEAVLVTTPDITSLRDAD-------RVTGLLECDGI--RD--IKMVVNRVRTDMIKGEDMMSVLDIQEMLGLAL 252 (340)
Q Consensus 184 ~~l~~ad~viiv~~~~~~s~~~~~-------~~~~~l~~~~~--~~--~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v 252 (340)
+++..||.+|+|+.|+..++..+. ++++.++..+. .. +..++|++.... ......+.+.+.+|.++
T Consensus 265 ~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~---~~~~~~~~~~~~~g~~v 341 (403)
T 3ez9_A 265 NGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKR---DHETSHSLAREVYASNI 341 (403)
T ss_dssp HHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CH---HHHHHHHHHHHHHTTSE
T ss_pred HHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCch---hHHHHHHHHHHHhhHhh
Confidence 999999999999999888665443 34444554433 23 334667765332 12223467778899998
Q ss_pred e-EEecCChHHHHHHhcCCceEeeCCCC---------HHHHHHHHHHHHHHhccc
Q 047623 253 L-GVIPEDSEVIRSTNRGYPLVLNKPPT---------LAGLAFEQAAWRLVEQDS 297 (340)
Q Consensus 253 ~-~~Ip~d~~~~~a~~~g~~v~~~~~~s---------~~~~~~~~la~~i~~~~~ 297 (340)
+ +.||+++.+.++...|+|+.++.|++ .+.+.+.+++++|.++.+
T Consensus 342 l~~~IP~~~~v~~a~~~G~~v~~~~p~s~~~~~~~~~~~~~~~~~la~~i~~~i~ 396 (403)
T 3ez9_A 342 LDSSLPRLDGFERCGESFDTVISANPQSYPGSAEALKKARTEAERFTKAVFDRIE 396 (403)
T ss_dssp ECCC-----------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred hceeCCchHHHHHHHhcCCCceecCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 89999999999999999999988753 467788888888887653
No 23
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.93 E-value=3e-26 Score=214.86 Aligned_cols=207 Identities=15% Similarity=0.182 Sum_probs=149.7
Q ss_pred CCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCC--------
Q 047623 45 LAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC-------- 116 (340)
Q Consensus 45 ~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~-------- 116 (340)
...+.+++|+|+|+|||+||||+|+|||..||++|++|++||+| ..++++.+||..+. .++.+++.+..
T Consensus 138 ~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~l~~~lg~~~~--~~l~d~l~~~~~~~~~~~~ 214 (373)
T 3fkq_A 138 GENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGTTDVFFQAEGN--ATMSDVIYSLKSRKANLLL 214 (373)
T ss_dssp CCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCCHHHHCCCSCS--CCHHHHHHHHHSCCSCHHH
T ss_pred ccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCCHHHHcCCCCC--CCHHHHHhhhhcccccccc
Confidence 34577899999999999999999999999999999999999999 55999999998775 67888776532
Q ss_pred ccccceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEe
Q 047623 117 RLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVT 196 (340)
Q Consensus 117 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~ 196 (340)
.+++.+.... ++++++|++........ +....+..+++.+.+. ..||+||||+|++.+.....++..||.+++|+
T Consensus 215 ~l~~~i~~~~--~~l~~l~~~~~~~~~~~-~~~~~~~~ll~~l~~~--~~yD~VIID~p~~~~~~~~~~l~~aD~vivv~ 289 (373)
T 3fkq_A 215 KLESCIKQSQ--EGVSYFSSTKVALDILE-ISYADIDTLIGNIQGM--DNYDEIIVDLPFSLEIEKLKLLSKAWRIIVVN 289 (373)
T ss_dssp HHHHTCEECT--TSCEECCCCSSGGGGGG-CCHHHHHHHHHHHHHT--SCCSEEEEECCCCCCHHHHHHHTTCSEEEEEE
T ss_pred cHHHHhhcCC--CCEEEecCCCChHhHHh-CCHHHHHHHHHHHHhc--CCCCEEEEeCCCCCCHHHHHHHHHCCEEEEEe
Confidence 2344443322 88999988775544332 4667788888888742 37999999999999998999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcC-CCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHH
Q 047623 197 TPDITSLRDADRVTGLLECDG-IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEV 262 (340)
Q Consensus 197 ~~~~~s~~~~~~~~~~l~~~~-~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~ 262 (340)
.++..++..+..+.+.++... ...+++|.|+.......... ..++.+..++++++.||+|+..
T Consensus 290 ~~~~~s~~~l~~~~~~l~~l~~~~~~~vv~N~~~v~~~~~~~---~~~fl~~~~l~~lG~IP~D~~~ 353 (373)
T 3fkq_A 290 DGSQLSNYKFMRAYESVVLLEQNDDINIIRNMNMIYNKFSNK---NSEMLSNISIKTIGGAPRYEHA 353 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSTTCCCGGGEEEEECSCCTT---TCCCCCSCSCEEEEECCCCTTC
T ss_pred cCCchHHHHHHHHHHHHHHhcccCCcEEEehhHHHHHHHHHH---HHHHhhcCCccceeecCCCCCc
Confidence 999988555544444443221 12345554443211100000 1112223588999999999874
No 24
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.88 E-value=1.9e-23 Score=193.95 Aligned_cols=239 Identities=18% Similarity=0.159 Sum_probs=136.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCcEEEEecCCCCCCchhccCCcCCCc----ccHHHhhcCCCccccce
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLA--RLGFSVVAIDADVGLRNLDLLLGLENRVN----YTVVEVLNGDCRLDQAL 122 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~l~~~~~~~~~~~----~~l~~~l~~~~~~~~~~ 122 (340)
..++|+|+|+||||||||+|+|||..|| +.|+||++||+|++ ++++.+||.+.... .++.++.....+....+
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~~l 94 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAAL 94 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHHHH
Confidence 4578999999999999999999999999 88999999999997 99999999864211 11122222111111111
Q ss_pred ecc----cc----------cCceeEeecCCCCCCC-CCCcch---hhHHHHHHHHHHhc---cCCCCEEEEcCCC-CC--
Q 047623 123 VRD----KR----------WSNFELLCISKPRSKL-PLGFGG---KALTWVVEALKSRQ---EGSPDFILIDCPA-GI-- 178 (340)
Q Consensus 123 ~~~----~~----------~~~l~~l~~~~~~~~~-~~~~~~---~~~~~l~~~l~~~~---~~~~D~VIiD~~~-~~-- 178 (340)
... .. ..+++.++.+...... ....+. ..+..+++.+.+.. +.+||+||||||| +.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpPtG~tL 174 (354)
T 2woj_A 95 KDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTL 174 (354)
T ss_dssp HHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCCHHHHH
T ss_pred HHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCCchHHH
Confidence 110 00 0135555422110000 001111 23444555444310 0169999999999 32
Q ss_pred -----CHH--------------H-----------------------------HHHHh--cCCeEEEEeCCChhhHHHHHH
Q 047623 179 -----DAG--------------F-----------------------------ITAIT--PANEAVLVTTPDITSLRDADR 208 (340)
Q Consensus 179 -----~~~--------------~-----------------------------~~~l~--~ad~viiv~~~~~~s~~~~~~ 208 (340)
... . ...+. .+|.+++|+.|+..++..+.+
T Consensus 175 rlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea~r 254 (354)
T 2woj_A 175 RFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETER 254 (354)
T ss_dssp HHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHHHH
Confidence 000 0 01121 688999999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeccc-CCcc---cccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHH
Q 047623 209 VTGLLECDGIRDIKMVVNRVR-TDMI---KGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLA 284 (340)
Q Consensus 209 ~~~~l~~~~~~~~~vviN~~~-~~~~---~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~ 284 (340)
+++.++..+.+..++|+|++. +... ...........++.+ +..++.++.+..+ .+.|+...++ ....+
T Consensus 255 ~~~~L~~~g~~~~gvVvN~v~~~~~~~~~~~~~~~~~~~~q~~~-l~~l~~~~~~~~v-----~~~P~~~~~~--~g~~~ 326 (354)
T 2woj_A 255 LIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKY-LDQIDELYEDFHV-----VKMPLCAGEI--RGLNN 326 (354)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCCC------CHHHHHHHHHHHHH-HHHHHHHTTTSEE-----EEEECCSSCC--CHHHH
T ss_pred HHHHHHHcCCCCCEEEEecCCCcccccccccHHHHHHHHHHHHH-HHHHHHhcCCCCE-----EEeecCCCCC--ccHHH
Confidence 999999999999999999998 5432 111111111111100 0011222222111 1334433333 45789
Q ss_pred HHHHHHHHHhcc
Q 047623 285 FEQAAWRLVEQD 296 (340)
Q Consensus 285 ~~~la~~i~~~~ 296 (340)
+.++++.+.+..
T Consensus 327 l~~la~~l~~~~ 338 (354)
T 2woj_A 327 LTKFSQFLNKEY 338 (354)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC
Confidence 999999998764
No 25
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.87 E-value=4.3e-23 Score=191.43 Aligned_cols=232 Identities=20% Similarity=0.219 Sum_probs=140.2
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCccc-H---HHhhcCCCccccc
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYT-V---VEVLNGDCRLDQA 121 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~-l---~~~l~~~~~~~~~ 121 (340)
..+.+++|+|+|+|||+||||+|+|||..+|++|+||++||+|++ ++++.+|+.+...... + .++.....+....
T Consensus 21 ~~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~-~~l~~~l~~~~~~~~~~v~g~~~l~~~~id~~~~ 99 (349)
T 3ug7_A 21 EKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA-HSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKA 99 (349)
T ss_dssp HSSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT-CHHHHHHCSCCCSSCEECTTCSSEEEEECCHHHH
T ss_pred cccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC-CCHHHHhCCCCCcCccccccccceeeeccCHHHH
Confidence 456779999999999999999999999999999999999999997 8999999876431110 0 0111000010000
Q ss_pred eeccc---ccCceeEeecCCCCCCC----CCCcch---hhHHHHHHHHHHhccCCCCEEEEcCCCCCCH------HH-H-
Q 047623 122 LVRDK---RWSNFELLCISKPRSKL----PLGFGG---KALTWVVEALKSRQEGSPDFILIDCPAGIDA------GF-I- 183 (340)
Q Consensus 122 ~~~~~---~~~~l~~l~~~~~~~~~----~~~~~~---~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~~-~- 183 (340)
+.... ......+++.+...... ...... ..+..+.+.+. +.+||+|||||||.... .. .
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~---~~~yD~VIiDtpPt~~tlrlL~~p~~~~ 176 (349)
T 3ug7_A 100 MEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMD---SNEFDVVIFDTAPTGHTLRFLGMPEVMD 176 (349)
T ss_dssp HHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHH---CCSCSEEEECSCCCTTGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHH---hCCCCEEEECCCCChHHHHHHhhHHHHH
Confidence 00000 00000011111000000 000000 11222232222 35799999999995421 00 0
Q ss_pred -----------------------------------------------------HHHhc--CCeEEEEeCCChhhHHHHHH
Q 047623 184 -----------------------------------------------------TAITP--ANEAVLVTTPDITSLRDADR 208 (340)
Q Consensus 184 -----------------------------------------------------~~l~~--ad~viiv~~~~~~s~~~~~~ 208 (340)
+.+.. .+.+++|+.|+..++..+.+
T Consensus 177 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~e~~r 256 (349)
T 3ug7_A 177 KYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESER 256 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHHHHHH
Confidence 01111 47799999999999999999
Q ss_pred HHHHHHhcCCCceEEEEecccCCccccc--------ccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCH
Q 047623 209 VTGLLECDGIRDIKMVVNRVRTDMIKGE--------DMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTL 280 (340)
Q Consensus 209 ~~~~l~~~~~~~~~vviN~~~~~~~~~~--------~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~ 280 (340)
.++.++..+++..++|+|++........ .....+++.+.++...++.||.++. .+ .
T Consensus 257 ~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~--------------e~--~ 320 (349)
T 3ug7_A 257 AMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRT--------------EA--K 320 (349)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCSS--------------CS--C
T ss_pred HHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCC--------------CC--C
Confidence 9999999999999999999987531000 1123567778888888889988653 11 1
Q ss_pred HHHHHHHHHHHHHhccc
Q 047623 281 AGLAFEQAAWRLVEQDS 297 (340)
Q Consensus 281 ~~~~~~~la~~i~~~~~ 297 (340)
...++.++++.+++...
T Consensus 321 g~~~L~~~~~~l~~~~~ 337 (349)
T 3ug7_A 321 GIETLKQIAKILYGEEE 337 (349)
T ss_dssp SHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHcCCCC
Confidence 34567777777776643
No 26
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.86 E-value=1.5e-21 Score=179.48 Aligned_cols=229 Identities=19% Similarity=0.175 Sum_probs=137.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCc-ccHHHhhcC-CCccccceecc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVN-YTVVEVLNG-DCRLDQALVRD 125 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~-~~l~~~l~~-~~~~~~~~~~~ 125 (340)
+.+++|+|+|+|||+||||+|+|||..+|++|+||++||+|++ ++++.+|+.+.... ..+.+.+.. ..+....+...
T Consensus 11 ~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~-~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~ 89 (324)
T 3zq6_A 11 KGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA-HSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEY 89 (324)
T ss_dssp TTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS-CCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC-cCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHH
Confidence 3458999999999999999999999999999999999999996 99999998763211 111111110 00111110000
Q ss_pred c--ccCc-eeEeecCCCCCCC-----CCCcchh---hHHHHHHHHHHhccCCCCEEEEcCCCCCCH------HH------
Q 047623 126 K--RWSN-FELLCISKPRSKL-----PLGFGGK---ALTWVVEALKSRQEGSPDFILIDCPAGIDA------GF------ 182 (340)
Q Consensus 126 ~--~~~~-l~~l~~~~~~~~~-----~~~~~~~---~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~~------ 182 (340)
. .... ..+++.+...... ....... .+..+.+.+. ..+||+|||||||.... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~---~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~ 166 (324)
T 3zq6_A 90 QAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMT---TDEYDIVIFDTAPTGHTLRLLSFPEIMDSWV 166 (324)
T ss_dssp HHHC---------------------CTTSTTHHHHHHHHHHHHHHH---HCCCSEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHhHHHHHHHH
Confidence 0 0000 0122211110000 0001111 1223333333 34799999999993211 00
Q ss_pred -----------------------------------------------HHHHhc--CCeEEEEeCCChhhHHHHHHHHHHH
Q 047623 183 -----------------------------------------------ITAITP--ANEAVLVTTPDITSLRDADRVTGLL 213 (340)
Q Consensus 183 -----------------------------------------------~~~l~~--ad~viiv~~~~~~s~~~~~~~~~~l 213 (340)
.+.+.. .+.+++|+.|+..++..+.+..+.+
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l 246 (324)
T 3zq6_A 167 GKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKAL 246 (324)
T ss_dssp HHHHHHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHH
Confidence 012222 3589999999999999999999999
Q ss_pred HhcCCCceEEEEecccCCccccc--------ccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHH
Q 047623 214 ECDGIRDIKMVVNRVRTDMIKGE--------DMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF 285 (340)
Q Consensus 214 ~~~~~~~~~vviN~~~~~~~~~~--------~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~ 285 (340)
+..+++..++|+|++........ ....++++.+.++...++.||..+.- +. ...++
T Consensus 247 ~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~~~e--------------~~--g~~~L 310 (324)
T 3zq6_A 247 EKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLLKKE--------------AK--GIETL 310 (324)
T ss_dssp HHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSC--------------SC--SHHHH
T ss_pred HHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCC--------------CC--CHHHH
Confidence 99999999999999987521000 11235566777777777788865431 11 34566
Q ss_pred HHHHHHHHhcc
Q 047623 286 EQAAWRLVEQD 296 (340)
Q Consensus 286 ~~la~~i~~~~ 296 (340)
.++++.+.+..
T Consensus 311 ~~~~~~l~~~~ 321 (324)
T 3zq6_A 311 EKIAEQLYGEP 321 (324)
T ss_dssp HHHHHHHHCSC
T ss_pred HHHHHHHhCCC
Confidence 77777776654
No 27
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.84 E-value=3.8e-20 Score=160.89 Aligned_cols=197 Identities=16% Similarity=0.137 Sum_probs=119.8
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
+|+|+|+|+|||+||||+|+|||..|+++|+||+++| ++..... . ..........+.+......... ... .
T Consensus 1 ~k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d--p~~~~~~-~--~~~~~~~~d~~~~~~~~~~~~~---~~~-~ 71 (224)
T 1byi_A 1 SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK--PVASGSE-K--TPEGLRNSDALALQRNSSLQLD---YAT-V 71 (224)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESCB-C--CTTSCBCHHHHHHHHTCSSCCC---HHH-H
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc--ceecCCc-c--CCCCcChHHHHHHHHHhCCCCC---hhh-c
Confidence 3789999999999999999999999999999999975 4421111 0 0000000111111111111000 000 0
Q ss_pred ceeEe--ecCCCCCC--CCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH------HHHHHhc-CCeEEEEeCC
Q 047623 130 NFELL--CISKPRSK--LPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG------FITAITP-ANEAVLVTTP 198 (340)
Q Consensus 130 ~l~~l--~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~------~~~~l~~-ad~viiv~~~ 198 (340)
+...+ +..+.... .........+...++.+.+ +||||||||||++... ....... .+.+++|+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~----~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~ 147 (224)
T 1byi_A 72 NPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQ----QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGV 147 (224)
T ss_dssp CSEEESSCSCHHHHHHHHTCCCCHHHHHHHHHHHHT----TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEEC
T ss_pred ccEEeCCCCCHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecC
Confidence 11111 11100000 0001223344445555544 7999999999977531 1222222 3358899989
Q ss_pred ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChH
Q 047623 199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSE 261 (340)
Q Consensus 199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~ 261 (340)
+..++..+...++.++..+.+..++|+|+++++... .....+.+.+.++.++++.||+++.
T Consensus 148 ~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~--~~~~~~~l~~~~~~~vl~~Ip~~~~ 208 (224)
T 1byi_A 148 KLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKR--HAEYMTTLTRMIPAPLLGEIPWLAE 208 (224)
T ss_dssp STTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTT--HHHHHHHHHHHSSSCEEEEECCCTT
T ss_pred CCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhh--HHHHHHHHHHHcCCCEEEECCCCcC
Confidence 999999999999999877888899999999875322 1223567778899999999999874
No 28
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.81 E-value=6.1e-20 Score=168.94 Aligned_cols=179 Identities=20% Similarity=0.193 Sum_probs=111.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCC--C--cccHHHhhcCCCcccccee
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR--V--NYTVVEVLNGDCRLDQALV 123 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~--~--~~~l~~~l~~~~~~~~~~~ 123 (340)
+..++|.|+|+|||+||||+|+|||..+|++|+||++||+|++ ++++.+|+.+.. + ..++.++.....+.+..+.
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~~l~~~~~~~~~~~~ 94 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQ 94 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCSSEEEEECCHHHHHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCCCeeEEecCHHHHHH
Confidence 3457889999999999999999999999999999999999999 999999987521 1 1122222222111111111
Q ss_pred ccc-cc-Cc-ee-EeecCCCCCCCCCCcchh---hHHHHHHHHHHhccCCCCEEEEcCCCC-CC------HH--------
Q 047623 124 RDK-RW-SN-FE-LLCISKPRSKLPLGFGGK---ALTWVVEALKSRQEGSPDFILIDCPAG-ID------AG-------- 181 (340)
Q Consensus 124 ~~~-~~-~~-l~-~l~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~D~VIiD~~~~-~~------~~-------- 181 (340)
... .. .+ ++ +++...... ........ .+.++.+.+.. .+||||||||||. .. ..
T Consensus 95 ~~~~~~~~~~l~~~l~~~l~~l-~~~~pg~~e~~~~~~~~~~l~~---~~yD~ViiDtpPtg~~l~lL~~p~~~~~~l~~ 170 (329)
T 2woo_A 95 EMTEQADQQNPNNPLSGMMQDL-AFTIPGIDEALAFAEILKQIKS---MEFDCVIFDTAPTGHTLRFLNFPTVLEKALGK 170 (329)
T ss_dssp HHHHTC--------CCHHHHHH-HTTSTTHHHHHHHHHHHHHHHH---TCCSEEEEECCSSSCTTTGGGHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHh---CCCCEEEECCCCchHHHHHHHHHHHHHHHHHH
Confidence 100 00 00 11 111000000 00001111 23334444432 4899999999993 22 00
Q ss_pred ----------HHHH-------------------------------Hh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCC
Q 047623 182 ----------FITA-------------------------------IT--PANEAVLVTTPDITSLRDADRVTGLLECDGI 218 (340)
Q Consensus 182 ----------~~~~-------------------------------l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~ 218 (340)
.... +. ..+.+++|+.|+..++..+.+.++.++..+.
T Consensus 171 l~~~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~~~gi 250 (329)
T 2woo_A 171 LGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEI 250 (329)
T ss_dssp HHTSCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHHHCCC
Confidence 0011 10 1247999999999999999999999999999
Q ss_pred CceEEEEeccc-CC
Q 047623 219 RDIKMVVNRVR-TD 231 (340)
Q Consensus 219 ~~~~vviN~~~-~~ 231 (340)
+..++|+|++. +.
T Consensus 251 ~v~gvVvN~~~~p~ 264 (329)
T 2woo_A 251 DTHNIVVNQLLLDP 264 (329)
T ss_dssp EEEEEEEEEECCCS
T ss_pred CCCEEEEeCCcCcc
Confidence 99999999998 44
No 29
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.80 E-value=2.2e-18 Score=158.31 Aligned_cols=170 Identities=21% Similarity=0.234 Sum_probs=103.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCccc-------HHHhhcC-CCccccc
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYT-------VVEVLNG-DCRLDQA 121 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~-------l~~~l~~-~~~~~~~ 121 (340)
+++|.|+|+|||+||||+|+|||..+|+.|++|++||+|++ ++++.+|+.+...... +.....+ ...+.+.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~-~~l~~~l~~~~~~~~~~v~~~~~L~~~~id~~~~~~~~ 93 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA-HNLSDAFSQKFGKEARLVEGFDNLYAMEIDPNGSMQDL 93 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS-CHHHHHHTSCCCSSCEECTTCSSEEEEECCC-------
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC-CChhHHhccccCCCceeecCCCCceeeecCHHHHHHHH
Confidence 35666888999999999999999999999999999999998 8899888865321111 1000000 0000010
Q ss_pred eecccc-----cCceeEeecCCCCCCC-CCCcchhh---HHHHHHHHHHhccCCCCEEEEcCCCCCCH------H-----
Q 047623 122 LVRDKR-----WSNFELLCISKPRSKL-PLGFGGKA---LTWVVEALKSRQEGSPDFILIDCPAGIDA------G----- 181 (340)
Q Consensus 122 ~~~~~~-----~~~l~~l~~~~~~~~~-~~~~~~~~---~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~----- 181 (340)
...... ..++.++ ... ....+.++ +..+.+.+. +.+||+|||||||.... .
T Consensus 94 ~~~~~~~~~~~~~~l~~~------~~~~~~~Pg~~e~~~~~~~~~~~~---~~~yD~VIiDtpPtg~tLrlL~lp~~l~~ 164 (334)
T 3iqw_A 94 LAGQTGDGDAGMGGVGVM------QDLAYAIPGIDEAMSFAEVLKQVN---SLSYETIVFDTAPTGHTLRFLQFPTVLEK 164 (334)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHHH---TSSCSEEEEECCCHHHHHHHHTHHHHC--
T ss_pred HHHhhcccccccccchhh------HHhhcCCCCHHHHHHHHHHHHHHH---hCCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 000000 0011110 000 00011122 222333332 35899999999992100 0
Q ss_pred ------------------------------------------------HHHHHhc--CCeEEEEeCCChhhHHHHHHHHH
Q 047623 182 ------------------------------------------------FITAITP--ANEAVLVTTPDITSLRDADRVTG 211 (340)
Q Consensus 182 ------------------------------------------------~~~~l~~--ad~viiv~~~~~~s~~~~~~~~~ 211 (340)
..+.+.. .+.+++|+.|+..++..+.+..+
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~ 244 (334)
T 3iqw_A 165 ALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQ 244 (334)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHHHH
Confidence 0111222 35799999999999999999999
Q ss_pred HHHhcCCCceEEEEeccc
Q 047623 212 LLECDGIRDIKMVVNRVR 229 (340)
Q Consensus 212 ~l~~~~~~~~~vviN~~~ 229 (340)
.++..+++..++|+|++.
T Consensus 245 ~L~~~gi~v~gvVvN~~~ 262 (334)
T 3iqw_A 245 ELANYGIDTHCIVVNQLL 262 (334)
T ss_dssp HHHHTTCCEEEEEEEEEC
T ss_pred HHHHCCCCccEEEECCCc
Confidence 999999999999999987
No 30
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.79 E-value=8.1e-19 Score=161.99 Aligned_cols=180 Identities=18% Similarity=0.142 Sum_probs=98.4
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCcEEEEecCCCCCCchhccCCcCCCcc-------cHHHhhcCC-Ccccc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLA--RLGFSVVAIDADVGLRNLDLLLGLENRVNY-------TVVEVLNGD-CRLDQ 120 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~l~~~~~~~~~~~~-------~l~~~l~~~-~~~~~ 120 (340)
+.|.|+++|||+||||+|+|||..+| +.|++|++||+|++ ++++.+|+.+..... ++.....+. ..+.+
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~-~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~~~~ 96 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA-HNLSDAFCQKFGKDARKVEGLPNLSCMEIDPEAAMSD 96 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CHHHHHHTSCCCSSCEEETTEEEEEEEECCC------
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CChHHHhccccCCCceeccCCCCceEEeeCHHHHHHH
Confidence 35556667999999999999999999 88999999999987 899999986522111 110000000 00000
Q ss_pred ceeccc-----ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh---------ccCCCCEEEEcCCCCCCHH-----
Q 047623 121 ALVRDK-----RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSR---------QEGSPDFILIDCPAGIDAG----- 181 (340)
Q Consensus 121 ~~~~~~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------~~~~~D~VIiD~~~~~~~~----- 181 (340)
...... ...++..+...... ..+.......+..+++.+.+. ...+||+|||||||.....
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~l 175 (348)
T 3io3_A 97 LQQQASQYNNDPNDPLKSMMSDMTG-SIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQL 175 (348)
T ss_dssp ------------------------------------------------------------CCEEEEECSSHHHHHHHTC-
T ss_pred HHHHHHhhcccccccHhHHhHHhhc-CCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCchHHHHHHhh
Confidence 000000 00001111000000 000000001223333333321 1126999999999921100
Q ss_pred ----------------------------------------------HHHHHh--cCCeEEEEeCCChhhHHHHHHHHHHH
Q 047623 182 ----------------------------------------------FITAIT--PANEAVLVTTPDITSLRDADRVTGLL 213 (340)
Q Consensus 182 ----------------------------------------------~~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l 213 (340)
....+. ..+.+++|+.|+..++..+.+.++.+
T Consensus 176 P~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~~L 255 (348)
T 3io3_A 176 PSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYETERMIQEL 255 (348)
T ss_dssp --------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHHHHHHHHHH
Confidence 011121 13579999999999999999999999
Q ss_pred HhcCCCceEEEEecccCCc
Q 047623 214 ECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 214 ~~~~~~~~~vviN~~~~~~ 232 (340)
+..+++..++|+|++....
T Consensus 256 ~~~gi~v~gvVvN~~~~~~ 274 (348)
T 3io3_A 256 MSYNMDVNSIVVNQLLFAE 274 (348)
T ss_dssp HHTTCCCCEEEEEEECCCC
T ss_pred HHCCCCccEEEEcCCcccc
Confidence 9999999999999998753
No 31
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.74 E-value=1.9e-18 Score=171.11 Aligned_cols=207 Identities=21% Similarity=0.265 Sum_probs=118.0
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHH--HhhcCCCccccceecc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVV--EVLNGDCRLDQALVRD 125 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~ 125 (340)
.+.++|.|+++|||+||||+|+|||..++++|++|+++|+|++ ++++.+|+.... +.... +...........+...
T Consensus 324 ~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~-~~l~~~l~~~~~-~l~~~~~~~~~~~~~~~~~v~~~ 401 (589)
T 1ihu_A 324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA-AHLSMTLNGSLN-NLQVSRIDPHEETERYRQHVLET 401 (589)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC------------C-CEEEEECCHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc-ccHhHHhcccCC-CceeeecchHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999999 888888876321 11100 0000000000011000
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhc-cCCCCEEEEcCCCCCCHH----------------------H
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQ-EGSPDFILIDCPAGIDAG----------------------F 182 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~D~VIiD~~~~~~~~----------------------~ 182 (340)
. ..++... ..................+++.+.+.+ ..+||+|||||||+.... .
T Consensus 402 ~-~~~l~~~--~~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~ 478 (589)
T 1ihu_A 402 K-GKELDEA--GKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHF 478 (589)
T ss_dssp H-HTTCCHH--HHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC-----------------
T ss_pred h-hccCChh--hHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHH
Confidence 0 0111100 000000000000011122444444433 246999999999973211 0
Q ss_pred ---HHHHh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCccccc---------ccccHHHHHHHh
Q 047623 183 ---ITAIT--PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGE---------DMMSVLDIQEML 248 (340)
Q Consensus 183 ---~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~---------~~~~~~~i~~~~ 248 (340)
...+. .+|.+++|+.++..++..+.++++.++..+.+..++|+|++.+...... ....++++.+.+
T Consensus 479 ~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 558 (589)
T 1ihu_A 479 TTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQH 558 (589)
T ss_dssp -CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc
Confidence 11222 5689999999999999999999999999999999999999987531111 112344566667
Q ss_pred CCceeEEecCCh
Q 047623 249 GLALLGVIPEDS 260 (340)
Q Consensus 249 g~~v~~~Ip~d~ 260 (340)
+.++ +.||+.+
T Consensus 559 ~~~v-~~iP~~~ 569 (589)
T 1ihu_A 559 ASRV-ALVPVLA 569 (589)
T ss_dssp CSSE-EEEECCS
T ss_pred CCcE-EEccCCC
Confidence 7666 6777644
No 32
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.72 E-value=1.8e-17 Score=164.14 Aligned_cols=177 Identities=19% Similarity=0.146 Sum_probs=107.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCccc----HHHhhcCCCccccceecc-
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYT----VVEVLNGDCRLDQALVRD- 125 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~- 125 (340)
+.|.|+++|||+||||+|+|||..+|++|+||++||+|++ ++++..|+.+...... +.++.....+........
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~-~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~~~~ 86 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQYR 86 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHHHH
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC-cCHHHHhCCcccCCCceeccchhhhhccCCHHHHHHHHH
Confidence 3455778999999999999999999999999999999997 9999999886432110 011111110110000000
Q ss_pred --cccCceeEeecCCC------CCC--CCCCcchhhHHHHHH--HHHHhccCCCCEEEEcCCCCCCHH------------
Q 047623 126 --KRWSNFELLCISKP------RSK--LPLGFGGKALTWVVE--ALKSRQEGSPDFILIDCPAGIDAG------------ 181 (340)
Q Consensus 126 --~~~~~l~~l~~~~~------~~~--~~~~~~~~~~~~l~~--~l~~~~~~~~D~VIiD~~~~~~~~------------ 181 (340)
-..+...++|.... ... .......+.+..+++ .+. .+||+|||||||.....
T Consensus 87 ~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~----~~yD~VIiDt~P~~~~lrll~lP~~~~~~ 162 (589)
T 1ihu_A 87 ARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLL----TRFDHIIFDTAPTGHTIRLLQLPGAWSSF 162 (589)
T ss_dssp HHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHH----HHCSEEEESSCCCHHHHHHHHCGGGGTCC
T ss_pred HHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhc----ccCCEEEECCCCchhHHHHHHhHHHHHHH
Confidence 00011111111000 000 000001112233333 222 36999999999853210
Q ss_pred --------------------------HHHHHhc--CCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 182 --------------------------FITAITP--ANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 182 --------------------------~~~~l~~--ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
....+.. .+.+++|+.++..++..+.+.++.++..+.+..++|+|++.+..
T Consensus 163 l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~~ 241 (589)
T 1ihu_A 163 IDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKT 241 (589)
T ss_dssp C------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCGG
T ss_pred HHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCcc
Confidence 0111111 23699999999999999999999999999999999999998764
No 33
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.67 E-value=1.2e-16 Score=148.51 Aligned_cols=49 Identities=27% Similarity=0.283 Sum_probs=44.6
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE 101 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~ 101 (340)
..|.++++|||+||||+|+|||..+|+.|++|++||+ ++ ++++.+|+.+
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~-~~l~~~~~~~ 50 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AE-PVLPLLLEQT 50 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SC-SHHHHHHTSC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CC-CChHHhhCCC
Confidence 3566778999999999999999999999999999999 87 9999999876
No 34
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.61 E-value=1.7e-15 Score=131.90 Aligned_cols=197 Identities=11% Similarity=0.062 Sum_probs=118.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
..|+.|.|+|+..|+|||+++++|+..|+++|++|..+. |....... ..+ +..-.|.+......... .. .
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K--Pv~~g~~~---~~~--~~~~~D~~~~~~~~~~~-~~--~ 71 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK--PVASGQSQ---FSE--LCEDVESILNAYKHKFT-AA--E 71 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESBCS---SSS--SBHHHHHHHHHTTTSSC-HH--H
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec--ceeecCcc---CCC--CCChHHHHHHhcCCCCC-hh--h
Confidence 356899999999999999999999999999999999965 21000000 000 00001221100010000 00 0
Q ss_pred cCceeEeecCCCCCCCC-CCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH------HHHHHHh-cCCeEEEEeCCC
Q 047623 128 WSNFELLCISKPRSKLP-LGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA------GFITAIT-PANEAVLVTTPD 199 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~~~~~l~-~ad~viiv~~~~ 199 (340)
-+...+.......... ..-..-....+.+.+.+.+.++||+||||+++++.. ....... ...-+|+|+.++
T Consensus 72 -~~~~~~~~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~ 150 (228)
T 3of5_A 72 -INLISFNQAVAPHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIK 150 (228)
T ss_dssp -HCSEEESSSSCHHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECS
T ss_pred -EEEEEECCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCC
Confidence 1112221110000000 000011234455554442345899999999986532 1222222 244589999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEec
Q 047623 200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIP 257 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip 257 (340)
..++..+...++.++..+.+..++|+|+++++... .....+.+++.+|.+++++||
T Consensus 151 ~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~--~~~~~~~l~~~~g~pvLG~iP 206 (228)
T 3of5_A 151 VGCINHTLLTINELNRHNIKLAGWIANCNDSNIKY--IDEQINTIEELSGYKCSAKIS 206 (228)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSC--HHHHHHHHHHHHSCCCSEEEE
T ss_pred cchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchh--hHHHHHHHHHhhCCCEEEECC
Confidence 99999999999999888999999999999876321 123467788889999999999
No 35
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.60 E-value=1.9e-14 Score=136.50 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=105.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
..+++|+|+ ++||+||||++.+||.+++++ |++|+++|+|++.+.....+. ...
T Consensus 98 ~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~------------------------~~~ 152 (433)
T 2xxa_A 98 QPPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE------------------------TLA 152 (433)
T ss_dssp SSSEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH------------------------HHH
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH------------------------hhc
Confidence 457899998 589999999999999999999 999999999998554322110 001
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCCC--HHHHHH------HhcCCeEEEEeC
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGID--AGFITA------ITPANEAVLVTT 197 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~~~------l~~ad~viiv~~ 197 (340)
...++++++++.. .++..+ ...++.+.. .+||+|||||||... ...... +..+|.+++|+.
T Consensus 153 ~~~~l~v~~~~~~-------~dp~~i~~~~l~~~~~---~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvd 222 (433)
T 2xxa_A 153 EQVGVDFFPSDVG-------QKPVDIVNAALKEAKL---KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVD 222 (433)
T ss_dssp HHHTCEECCCCSS-------SCHHHHHHHHHHHHHH---TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEE
T ss_pred ccCCeeEEeCCCC-------CCHHHHHHHHHHHHHh---CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEee
Confidence 1256777765542 122222 334444442 379999999998653 233322 336788888887
Q ss_pred CChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 198 PDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 198 ~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
+... ..+....+.+.. ..+..++|+|+++..... .....+.+.++.++.
T Consensus 223 a~~g--~~~~~~~~~f~~-~l~i~gvVlnK~D~~~~~----g~~l~i~~~~~~Pi~ 271 (433)
T 2xxa_A 223 AMTG--QDAANTAKAFNE-ALPLTGVVLTKVDGDARG----GAALSIRHITGKPIK 271 (433)
T ss_dssp TTBC--TTHHHHHHHHHH-HSCCCCEEEECTTSSSCC----THHHHHHHHHCCCEE
T ss_pred cchh--HHHHHHHHHHhc-cCCCeEEEEecCCCCccH----HHHHHHHHHHCCCeE
Confidence 6532 223333333432 345678999999886532 234467777887744
No 36
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.54 E-value=4.1e-13 Score=122.53 Aligned_cols=170 Identities=18% Similarity=0.233 Sum_probs=106.0
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
.+.+++|+|+|. +|+||||++.+||..++..|.+|+++|+|.+.+..... +..+.. . .
T Consensus 102 ~~~~~vI~ivG~-~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~q----------l~~~~~--~---------~ 159 (320)
T 1zu4_A 102 ENRLNIFMLVGV-NGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQ----------LEEWIK--T---------R 159 (320)
T ss_dssp TTSCEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHH----------HHHHHT--T---------T
T ss_pred CCCCeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHH----------HHHHHh--c---------c
Confidence 466899999987 99999999999999999999999999999873322110 011100 0 0
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH--HHHH-------H-----hcCCeE
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG--FITA-------I-----TPANEA 192 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~--~~~~-------l-----~~ad~v 192 (340)
...++.++|..... ..+. ..+.+.+...+.++||+|||||||..... ..+. + ..+|.+
T Consensus 160 ~~~~l~vip~~~~~------~~p~--~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~v 231 (320)
T 1zu4_A 160 LNNKVDLVKANKLN------ADPA--SVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEV 231 (320)
T ss_dssp SCTTEEEECCSSTT------CCHH--HHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEE
T ss_pred ccCCceEEeCCCCC------CCHH--HHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceE
Confidence 12677777544321 1111 11233333323448999999999976431 2111 1 137888
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 193 VLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 193 iiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
++|+.... ..+.+.+.. .+.. .....++|+|+++..... -....+...++.|+.
T Consensus 232 llVl~a~~-~~~~l~~~~-~~~~-~~~i~GvVltk~d~~~~~----g~~~~~~~~~~~Pi~ 285 (320)
T 1zu4_A 232 LLVIDATT-GQNGVIQAE-EFSK-VADVSGIILTKMDSTSKG----GIGLAIKELLNIPIK 285 (320)
T ss_dssp EEEEEGGG-THHHHHHHH-HHTT-TSCCCEEEEECGGGCSCT----THHHHHHHHHCCCEE
T ss_pred EEEEECCC-cHHHHHHHH-HHhh-cCCCcEEEEeCCCCCCch----hHHHHHHHHHCcCEE
Confidence 88887763 233333332 2222 356789999999876532 235577778898875
No 37
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.53 E-value=4.1e-13 Score=118.09 Aligned_cols=194 Identities=13% Similarity=0.129 Sum_probs=117.9
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
.+.++.|.|+++..|+|||++++.|+.+|+++|++|..+.-=.+ +... ... + ...+.........
T Consensus 23 ~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~-g~~~-----~~~---D-~~~~~~~~g~~~~----- 87 (251)
T 3fgn_A 23 QSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQT-GTAR-----GDD---D-LAEVGRLAGVTQL----- 87 (251)
T ss_dssp CSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEEC-CGGG-----TCC---H-HHHHHHHHCCCEE-----
T ss_pred ccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeec-CCCC-----CCH---H-HHHHHHHcCCCCC-----
Confidence 46679999999999999999999999999999999999762111 1000 000 0 0111100000000
Q ss_pred ccCceeEeecCCC--CCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH-------HHHHHH-hcCCeEEEEe
Q 047623 127 RWSNFELLCISKP--RSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA-------GFITAI-TPANEAVLVT 196 (340)
Q Consensus 127 ~~~~l~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~-------~~~~~l-~~ad~viiv~ 196 (340)
.+...+..... ...............+.+.+.+ +..+||+||||+++++.. ...... ....-||+|+
T Consensus 88 --~~~~~~~~p~sP~~aa~~~~~~~~~~~~i~~~~~~-l~~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~ 164 (251)
T 3fgn_A 88 --AGLARYPQPMAPAAAAEHAGMALPARDQIVRLIAD-LDRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVV 164 (251)
T ss_dssp --EEEEECSSSSCHHHHHHHTTCCCCCHHHHHHHHHT-TCCTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEE
T ss_pred --CCCeeECCCCChHHHHHHcCCCCCCHHHHHHHHHH-HHhcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEE
Confidence 11111110000 0000000001123445555544 456899999999987631 222333 2356799999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChH
Q 047623 197 TPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSE 261 (340)
Q Consensus 197 ~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~ 261 (340)
..+..++..+...++.++..+.+..++|+|++..+.... .....+.+++. .+++++||++..
T Consensus 165 ~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~-~~~~~~~le~~--vpvLG~iP~~~~ 226 (251)
T 3fgn_A 165 TADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLV-AASNRSALARI--AMVRAALPAGAA 226 (251)
T ss_dssp CSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCCHH-HHHHHHHHHHH--SCEEEEEETTGG
T ss_pred cCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCchhhh-hhhHHHHHHHh--CCEEEEeeCCCC
Confidence 999999999999999998889999999999996432111 11234455554 999999999864
No 38
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.52 E-value=2.7e-13 Score=122.48 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=104.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
+++|+++ +++|+||||++.+||..++..|.+|+++|+|++.+.....+. .+ . ...
T Consensus 98 ~~vi~i~-G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~----------~~------------~--~~~ 152 (297)
T 1j8m_F 98 PYVIMLV-GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQ----------QL------------G--QQI 152 (297)
T ss_dssp SEEEEEE-CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHH----------HH------------H--HHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHH----------HH------------h--ccC
Confidence 7788887 689999999999999999999999999999998544332210 00 0 013
Q ss_pred ceeEeecCCCCCCCCCCcchhh-HHHHHHHHHHhccCCCCEEEEcCCCCCC--H---HHH-----HHHhcCCeEEEEeCC
Q 047623 130 NFELLCISKPRSKLPLGFGGKA-LTWVVEALKSRQEGSPDFILIDCPAGID--A---GFI-----TAITPANEAVLVTTP 198 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~---~~~-----~~l~~ad~viiv~~~ 198 (340)
++.++++... .++.. ....++.++. .+||+|||||||... . ... .....+|.+++|+.+
T Consensus 153 ~v~v~~~~~~-------~~p~~~~~~~l~~~~~---~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda 222 (297)
T 1j8m_F 153 GVPVYGEPGE-------KDVVGIAKRGVEKFLS---EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDA 222 (297)
T ss_dssp TCCEECCTTC-------CCHHHHHHHHHHHHHH---TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred CeEEEecCCC-------CCHHHHHHHHHHHHHh---CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence 4555553211 11222 2334444431 479999999999765 2 221 234578999999887
Q ss_pred ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE
Q 047623 199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG 254 (340)
Q Consensus 199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~ 254 (340)
... ..+....+.+.. ..+..++|+|+++..... .....+...++.++..
T Consensus 223 ~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~~~----g~~~~~~~~~~~pi~~ 271 (297)
T 1j8m_F 223 SIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTAKG----GGALSAVAATGATIKF 271 (297)
T ss_dssp GGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCTTH----HHHHHHHHTTTCCEEE
T ss_pred Cch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCcch----HHHHHHHHHHCcCEEE
Confidence 532 233333444443 456689999999876421 2244567778877753
No 39
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.48 E-value=1.4e-13 Score=120.51 Aligned_cols=214 Identities=10% Similarity=0.046 Sum_probs=119.0
Q ss_pred CCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhh---cCCC
Q 047623 40 NRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVL---NGDC 116 (340)
Q Consensus 40 ~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l---~~~~ 116 (340)
+...+..++|++.|.|+|+.+|+|||++++.|+..|+++|++|..+. |........-+ .. .+...++ ....
T Consensus 11 ~~~~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK--Pv~~g~~~~~~-~~---~D~~~~~~~~~~~~ 84 (242)
T 3qxc_A 11 SSGRENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK--PIETGVNDAIN-HS---SDAHLFLQDNRLLD 84 (242)
T ss_dssp --------CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC--CEECSCCTTTC-CC---SHHHHHHHHHHTTC
T ss_pred cchhhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe--eeecCCcccCC-CC---chHHHHHHHHHHHh
Confidence 34445667889999999999999999999999999999999999985 21011100000 01 1111110 1100
Q ss_pred -ccccceecccccCceeEe--ecCCCCCCCCCCcc-hhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH------HHHHH
Q 047623 117 -RLDQALVRDKRWSNFELL--CISKPRSKLPLGFG-GKALTWVVEALKSRQEGSPDFILIDCPAGIDAG------FITAI 186 (340)
Q Consensus 117 -~~~~~~~~~~~~~~l~~l--~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~------~~~~l 186 (340)
.... . . -+...+ |..+.......... ......+.+.+.+ +..+||+||||+++++... ...+.
T Consensus 85 ~g~~~---~--~-~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~-l~~~~D~vlIEGagGl~~pl~~~~~~adlA 157 (242)
T 3qxc_A 85 RSLTL---K--D-ISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHN-FTKTYDLVIVEGAGGLCVPITLEENMLDFA 157 (242)
T ss_dssp TTCCH---H--H-HCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHH-GGGTCSEEEEECCSCTTCBSSSSCBHHHHH
T ss_pred CCCCh---H--H-eeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHH-HHhcCCEEEEECCCCccccccccchHHHHH
Confidence 0100 0 0 011111 11100000000000 1123344444443 3448999999999876421 12222
Q ss_pred h-cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHH---hCCceeEEecCChHH
Q 047623 187 T-PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEM---LGLALLGVIPEDSEV 262 (340)
Q Consensus 187 ~-~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~---~g~~v~~~Ip~d~~~ 262 (340)
. ...-||+|+..+..++..+...++.++..+.+ .++|+|++.++....+ .....+++. ...+++.+++.-+.+
T Consensus 158 ~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~~~~~--~~~p~le~~~~~~~~~~~~~~~~~~~l 234 (242)
T 3qxc_A 158 LKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNTAFHS--ISLPYIELFNTRSNNPIVIFQQSLKVL 234 (242)
T ss_dssp HHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCCHHHH--HTHHHHHHHHHHCSSCCEEGGGCHHHH
T ss_pred HHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCccchhh--hhHHHHHHhcCcccCCceeccccHHHH
Confidence 2 24559999999999999999999999988999 9999999987642111 112233333 245666677766666
Q ss_pred HHHHhcC
Q 047623 263 IRSTNRG 269 (340)
Q Consensus 263 ~~a~~~g 269 (340)
.+.+..|
T Consensus 235 ~~~~~~~ 241 (242)
T 3qxc_A 235 MSFALKG 241 (242)
T ss_dssp HHHHHSC
T ss_pred HHHHhcC
Confidence 6665544
No 40
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.46 E-value=1.3e-12 Score=117.94 Aligned_cols=163 Identities=18% Similarity=0.222 Sum_probs=103.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
.+++|+++ +++|+||||++.+||..++..|.+|+++|+|++.+.....+. .+ . ..
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~----------~~------------~--~~ 151 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLR----------LL------------G--EK 151 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHH----------HH------------H--HH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHH----------Hh------------c--cc
Confidence 67899999 689999999999999999999999999999998433322111 00 0 11
Q ss_pred CceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHHH------hcCCeEEEEeCCC
Q 047623 129 SNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGI--DAGFITAI------TPANEAVLVTTPD 199 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~l------~~ad~viiv~~~~ 199 (340)
.++++++++... .+..+ ...++.+. ..+||+||||+||.. +......+ ..+|.+++|+...
T Consensus 152 ~~l~~~~~~~~~-------~p~~l~~~~l~~~~---~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~ 221 (295)
T 1ls1_A 152 VGVPVLEVMDGE-------SPESIRRRVEEKAR---LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAM 221 (295)
T ss_dssp HTCCEEECCTTC-------CHHHHHHHHHHHHH---HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred CCeEEEEcCCCC-------CHHHHHHHHHHHHH---hCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCC
Confidence 456666654321 12222 33444443 127999999999864 33222222 2588888888765
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
. . ..+.+..+.+.. ..+..++|+|+++.+... -....+...+|.|+.
T Consensus 222 ~-~-~~~~~~~~~~~~-~~~i~givlnk~d~~~~~----g~~~~~~~~~~~pi~ 268 (295)
T 1ls1_A 222 T-G-QEALSVARAFDE-KVGVTGLVLTKLDGDARG----GAALSARHVTGKPIY 268 (295)
T ss_dssp G-T-HHHHHHHHHHHH-HTCCCEEEEECGGGCSSC----HHHHHHHHHHCCCEE
T ss_pred C-c-HHHHHHHHHHhh-cCCCCEEEEECCCCCccH----HHHHHHHHHHCcCEE
Confidence 3 2 222223333332 355688999999876522 234567778888876
No 41
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.45 E-value=2.5e-13 Score=120.39 Aligned_cols=46 Identities=30% Similarity=0.517 Sum_probs=40.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL 94 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l 94 (340)
.+...+.+.++|||+||||++.+||..++ .|++|++||+|++...+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~ 56 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKEL 56 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCC
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcccc
Confidence 44568888889999999999999999999 99999999999995544
No 42
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.42 E-value=1.9e-12 Score=121.94 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=103.2
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
.+++|+++ +++|+||||++.+||.+++..|.+|+++|+|++.+.....+.. + . ..
T Consensus 97 ~~~vi~i~-G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~----------~------------~--~~ 151 (425)
T 2ffh_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL----------L------------G--EK 151 (425)
T ss_dssp SSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH----------H------------H--HH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH----------h------------c--cc
Confidence 56889988 6799999999999999999999999999999984443322210 0 0 01
Q ss_pred CceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCCC--HHHHH------HHhcCCeEEEEeCCC
Q 047623 129 SNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGID--AGFIT------AITPANEAVLVTTPD 199 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~~------~l~~ad~viiv~~~~ 199 (340)
.++++++.+.. .++..+ ...++.++ ..+||+|||||||... ..... ....+|.+++|+++.
T Consensus 152 ~gv~v~~~~~~-------~~p~~i~~~~l~~~~---~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~ 221 (425)
T 2ffh_A 152 VGVPVLEVMDG-------ESPESIRRRVEEKAR---LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAM 221 (425)
T ss_dssp HTCCEEECCTT-------CCHHHHHHHHHHHHH---HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred CCccEEecCCC-------CCHHHHHHHHHHHHH---HCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEecc
Confidence 45666665432 112222 33444443 2479999999999653 22221 123588899988765
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
. . ..+....+.+.. .....++|+|+++.+... -....+.+.+|.++.
T Consensus 222 t-g-q~av~~a~~f~~-~l~i~GVIlTKlD~~~~~----g~alsi~~~~g~PI~ 268 (425)
T 2ffh_A 222 T-G-QEALSVARAFDE-KVGVTGLVLTKLDGDARG----GAALSARHVTGKPIY 268 (425)
T ss_dssp G-T-THHHHHHHHHHH-HTCCCEEEEESGGGCSSC----HHHHHHHHHHCCCEE
T ss_pred c-h-HHHHHHHHHHHh-cCCceEEEEeCcCCcccH----HHHHHHHHHHCCCEE
Confidence 3 2 233333333332 355689999999876422 234456778888855
No 43
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.42 E-value=6.8e-12 Score=118.45 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=98.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
.+++|.++|. +|+||||++.+||.+++++|++|+++|+|+..+.....+.. +. ..
T Consensus 99 ~p~vIlivG~-~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~-----------~~-------------~~ 153 (443)
T 3dm5_A 99 KPTILLMVGI-QGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQ-----------LL-------------DR 153 (443)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHH-----------HH-------------GG
T ss_pred CCeEEEEECc-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHH-----------HH-------------Hh
Confidence 4688888876 99999999999999999999999999999984432211100 00 00
Q ss_pred CceeEeecCCCCCCCCCCcchh-hHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHHHH------HHhcCCeEEEEeCCC
Q 047623 129 SNFELLCISKPRSKLPLGFGGK-ALTWVVEALKSRQEGSPDFILIDCPAGID--AGFIT------AITPANEAVLVTTPD 199 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~~------~l~~ad~viiv~~~~ 199 (340)
.++.++..... .++. -....++.+.. ..||+|||||++... ..... ....+|.+++|+.+.
T Consensus 154 ~gvpv~~~~~~-------~dp~~i~~~al~~a~~---~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~ 223 (443)
T 3dm5_A 154 YHIEVFGNPQE-------KDAIKLAKEGVDYFKS---KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGT 223 (443)
T ss_dssp GTCEEECCTTC-------CCHHHHHHHHHHHHHH---TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred cCCcEEecCCC-------CCHHHHHHHHHHHHHh---CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCC
Confidence 22323221111 1111 12233444433 369999999999542 22211 123578899998875
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
.. ..+....+.+.+ .....++|+|+++..... -....+...++.|+.
T Consensus 224 ~g--q~a~~~a~~f~~-~~~i~gVIlTKlD~~~~g----G~~ls~~~~~g~PI~ 270 (443)
T 3dm5_A 224 IG--QQAYNQALAFKE-ATPIGSIIVTKLDGSAKG----GGALSAVAATGAPIK 270 (443)
T ss_dssp GG--GGHHHHHHHHHH-SCTTEEEEEECCSSCSSH----HHHHHHHHTTCCCEE
T ss_pred Cc--hhHHHHHHHHHh-hCCCeEEEEECCCCcccc----cHHHHHHHHHCCCEE
Confidence 42 122233344433 346789999999886522 224456667888875
No 44
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.37 E-value=2.3e-11 Score=115.20 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=99.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
..+++|+|+| .+|+||||++.+||..++++|++|+++|+|++.+.....+. .+ ..
T Consensus 97 ~~~~vI~ivG-~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~----------~~--------------~~ 151 (432)
T 2v3c_C 97 KKQNVILLVG-IQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLK----------QL--------------AE 151 (432)
T ss_dssp SSCCCEEEEC-CSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSH----------HH--------------HH
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHH----------Hh--------------hh
Confidence 3457888987 59999999999999999999999999999998655432110 00 00
Q ss_pred cCceeEeecC-CCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH--HHHHHH------hcCCeEEEEeCC
Q 047623 128 WSNFELLCIS-KPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA--GFITAI------TPANEAVLVTTP 198 (340)
Q Consensus 128 ~~~l~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~~~~l------~~ad~viiv~~~ 198 (340)
..++.+++.. ...... .-....++.+ ..||+||||||+.... .....+ ..+|.+++|+.+
T Consensus 152 ~~gv~v~~~~~~~~dp~------~i~~~~l~~~-----~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda 220 (432)
T 2v3c_C 152 KIHVPIYGDETRTKSPV------DIVKEGMEKF-----KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDG 220 (432)
T ss_dssp HSSCCEECCSSSCCSSS------TTHHHHHHTT-----SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEG
T ss_pred ccCcceEecCCCCCCHH------HHHHHHHHHh-----hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeec
Confidence 1455555443 111000 1112223222 4799999999997642 122211 258888888876
Q ss_pred ChhhHHHHHHHHHHHHhcCC-CceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 199 DITSLRDADRVTGLLECDGI-RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 199 ~~~s~~~~~~~~~~l~~~~~-~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
.... .+....+.+.. .. +..++|+|+++..... .....+.+.++.++.
T Consensus 221 ~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~D~~~~~----g~~l~~~~~~~~pi~ 269 (432)
T 2v3c_C 221 TIGQ--QAGIQAKAFKE-AVGEIGSIIVTKLDGSAKG----GGALSAVAETKAPIK 269 (432)
T ss_dssp GGGG--GHHHHHHHHHT-TSCSCEEEEEECSSSCSTT----HHHHHHHHHSSCCEE
T ss_pred cccH--HHHHHHHHHhh-cccCCeEEEEeCCCCccch----HHHHHHHHHHCCCEE
Confidence 4332 22233333332 34 5589999999876421 123457778888875
No 45
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.32 E-value=2.6e-11 Score=116.61 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=96.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
...++|+|+| .+|+||||++.+||.+++++|++|+++|+|++.+....++... . .
T Consensus 99 ~~~~vI~ivG-~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~-----------~-------------~ 153 (504)
T 2j37_W 99 GKQNVIMFVG-LQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQN-----------A-------------T 153 (504)
T ss_dssp S--EEEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHH-----------H-------------H
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHH-----------h-------------h
Confidence 4567888885 5899999999999999999999999999999844433222100 0 0
Q ss_pred cCceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCCC--H-HHHHH-----HhcCCeEEEEeCC
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGID--A-GFITA-----ITPANEAVLVTTP 198 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~~--~-~~~~~-----l~~ad~viiv~~~ 198 (340)
..++.+++.... .++..+ ...++.+. ..+||+||||||+... . ..... ...+|.+++|+++
T Consensus 154 ~~~i~v~~~~~~-------~dp~~i~~~al~~~~---~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa 223 (504)
T 2j37_W 154 KARIPFYGSYTE-------MDPVIIASEGVEKFK---NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDA 223 (504)
T ss_dssp HHTCCEEECCCC-------SCHHHHHHHHHHHHH---HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEET
T ss_pred ccCceEEccCCC-------CCHHHHHHHHHHHHH---HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEec
Confidence 023333332111 111111 22333332 2479999999999763 2 22111 2268999999887
Q ss_pred ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
.... . .....+.+.+. .+..++|+|+++..... .....+.+.+|.|+.
T Consensus 224 ~~g~-~-~~~~a~~~~~~-~~i~gvVlNK~D~~~~~----g~~l~~~~~~g~PI~ 271 (504)
T 2j37_W 224 SIGQ-A-CEAQAKAFKDK-VDVASVIVTKLDGHAKG----GGALSAVAATKSPII 271 (504)
T ss_dssp TCCT-T-HHHHHHHHHHH-HCCCCEEEECTTSCCCC----THHHHHHHHHCCCEE
T ss_pred cccc-c-HHHHHHHHHhh-cCceEEEEeCCccccch----HHHHHHHHHhCCCeE
Confidence 5431 1 22233333332 33358999999876421 123346677888874
No 46
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.24 E-value=6.5e-10 Score=100.56 Aligned_cols=167 Identities=17% Similarity=0.172 Sum_probs=100.0
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
.+++++|+++|. +|+||||++.+||..++..|.+|+++|+|.+.+..... +..+..
T Consensus 101 ~~~~~vi~ivG~-~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eq----------L~~~~~------------- 156 (306)
T 1vma_A 101 PEPPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQ----------LKIWGE------------- 156 (306)
T ss_dssp SSSCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHH----------HHHHHH-------------
T ss_pred CCCCeEEEEEcC-CCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHH----------HHHHHH-------------
Confidence 456789999987 99999999999999999999999999999873221100 001100
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH--HHH-------HH-----hcCCeE
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG--FIT-------AI-----TPANEA 192 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~--~~~-------~l-----~~ad~v 192 (340)
..++.+++.... ..... .+.+.+...+..+||+||+|+|+..... ... .+ ...|.+
T Consensus 157 -~~gl~~~~~~s~-------~~~~~--v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~v 226 (306)
T 1vma_A 157 -RVGATVISHSEG-------ADPAA--VAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHET 226 (306)
T ss_dssp -HHTCEEECCSTT-------CCHHH--HHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEE
T ss_pred -HcCCcEEecCCc-------cCHHH--HHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEE
Confidence 023334432211 11111 1122232223347999999999864211 111 11 137888
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE
Q 047623 193 VLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG 254 (340)
Q Consensus 193 iiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~ 254 (340)
++|+... ...+.+... +.+.+ .....++|+|+++.... .-....+...++.|+..
T Consensus 227 llVlda~-t~~~~l~~a-~~~~~-~~~i~gvVlTk~D~~~~----gG~~l~~~~~~~~Pi~~ 281 (306)
T 1vma_A 227 LLVIDAT-TGQNGLVQA-KIFKE-AVNVTGIILTKLDGTAK----GGITLAIARELGIPIKF 281 (306)
T ss_dssp EEEEEGG-GHHHHHHHH-HHHHH-HSCCCEEEEECGGGCSC----TTHHHHHHHHHCCCEEE
T ss_pred EEEEECC-CCHHHHHHH-HHHHh-cCCCCEEEEeCCCCccc----hHHHHHHHHHHCCCEEE
Confidence 8888765 233333333 33332 25668899999987652 22356788889988773
No 47
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.21 E-value=2.6e-10 Score=107.58 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=95.6
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
..+++|+++ +.+|+||||++.+||.++++.|++|+++|+|...+.....+. .+..
T Consensus 95 ~~~~vI~lv-G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~-----------~~~~------------- 149 (433)
T 3kl4_A 95 KLPFIIMLV-GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLL-----------QLGN------------- 149 (433)
T ss_dssp SSSEEEEEC-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHH-----------HHHH-------------
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHH-----------HHHH-------------
Confidence 346777777 568999999999999999999999999999986332211110 0000
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC----HHHH----H--HHhcCCeEEEEeC
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID----AGFI----T--AITPANEAVLVTT 197 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~----~~~~----~--~l~~ad~viiv~~ 197 (340)
..++.+...... . .......+.+......+||+||||+++... .... . .....|.+++|++
T Consensus 150 ~~gv~~~~~~~~-------~--dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlD 220 (433)
T 3kl4_A 150 QIGVQVYGEPNN-------Q--NPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVID 220 (433)
T ss_dssp TTTCCEECCTTC-------S--CHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred hcCCceeecccc-------C--CHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEe
Confidence 011222211110 1 111122233444333579999999999533 2111 1 1224688888887
Q ss_pred CChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 198 PDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 198 ~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
.... ..+....+.+.+ .....++|+|+++..... -....+...++.|+.
T Consensus 221 a~~g--q~a~~~a~~f~~-~~~~~gVIlTKlD~~a~~----G~als~~~~~g~Pi~ 269 (433)
T 3kl4_A 221 ASIG--QKAYDLASRFHQ-ASPIGSVIITKMDGTAKG----GGALSAVVATGATIK 269 (433)
T ss_dssp GGGG--GGGHHHHHHHHH-HCSSEEEEEECGGGCSCH----HHHHHHHHHHTCEEE
T ss_pred Cccc--hHHHHHHHHHhc-ccCCcEEEEecccccccc----hHHHHHHHHHCCCEE
Confidence 7542 122233344432 235578999999986522 234456667888864
No 48
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.16 E-value=4.7e-10 Score=101.17 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=92.0
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
..+++|+++|. +|+||||++.+||..++. +|++|+++|+|++.......+. . ....
T Consensus 103 ~~g~vi~lvG~-~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~----------~-~~~~----------- 159 (296)
T 2px0_A 103 IHSKYIVLFGS-TGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLK----------T-YAEL----------- 159 (296)
T ss_dssp CCSSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHH----------H-HHTT-----------
T ss_pred CCCcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHH----------H-HHHh-----------
Confidence 45679999976 899999999999999996 7999999999997433221110 0 0000
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH--H-HHH---HHh--cCCeEEEEeCC
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA--G-FIT---AIT--PANEAVLVTTP 198 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~-~~~---~l~--~ad~viiv~~~ 198 (340)
.++.+... .....+...+..+ .+||+||+||++.... . ... .+. ..+.+++++..
T Consensus 160 --~gl~~~~~----------~~~~~l~~al~~~-----~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~a 222 (296)
T 2px0_A 160 --LQAPLEVC----------YTKEEFQQAKELF-----SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSA 222 (296)
T ss_dssp --TTCCCCBC----------SSHHHHHHHHHHG-----GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEET
T ss_pred --cCCCeEec----------CCHHHHHHHHHHh-----cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 11111100 1122233333332 3699999999986532 1 111 222 25566666633
Q ss_pred ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
.. ....+.++.+.+. .....++|+|+++..... -....+...+|.++.
T Consensus 223 t~-~~~~~~~~~~~~~--~l~~~giVltk~D~~~~~----g~~~~~~~~~~~pi~ 270 (296)
T 2px0_A 223 TA-KYEDMKHIVKRFS--SVPVNQYIFTKIDETTSL----GSVFNILAESKIGVG 270 (296)
T ss_dssp TB-CHHHHHHHTTTTS--SSCCCEEEEECTTTCSCC----HHHHHHHHTCSCCCS
T ss_pred CC-CHHHHHHHHHHHh--cCCCCEEEEeCCCcccch----hHHHHHHHHHCcCEE
Confidence 22 2333334333333 245678999999876422 234566777887765
No 49
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.08 E-value=6.1e-10 Score=103.17 Aligned_cols=155 Identities=20% Similarity=0.176 Sum_probs=85.0
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
.++..+|+++ +++|+||||++.+|+..++..|++|+++|.|++.+.... .++........ ..
T Consensus 76 ~~~~~~I~i~-G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g-------------~~l~d~~~~~~----~~ 137 (355)
T 3p32_A 76 SGNAHRVGIT-GVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGG-------------SILGDKTRMAR----LA 137 (355)
T ss_dssp CCCSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----------------------------CHH----HH
T ss_pred cCCceEEEEE-CCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccc-------------hhccchhhHHh----hc
Confidence 3456778776 579999999999999999999999999999998442111 01111111110 01
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA 206 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~ 206 (340)
..+++++.+.+..... ..........+..+. ...||++|||||+ +.......+..+|.+++|+.++.....
T Consensus 138 ~~~~~~i~~~~~~~~~---~~~~~~t~d~i~~~~---~~~~~~iiiDTpG-i~~~~~~~~~~aD~vl~V~d~~~~~~~-- 208 (355)
T 3p32_A 138 VHPNAYIRPSPTSGTL---GGVTRATRETVVLLE---AAGFDVILIETVG-VGQSEVAVANMVDTFVLLTLARTGDQL-- 208 (355)
T ss_dssp TCTTEEEECCC--CCH---HHHHHHHHHHHHHHH---HTTCCEEEEEECS-CSSHHHHHHTTCSEEEEEEESSTTCTT--
T ss_pred cCCCeeEEECCCCccc---cchhHHHHHHHHHHh---hCCCCEEEEeCCC-CCcHHHHHHHhCCEEEEEECCCCCccH--
Confidence 1245555543322100 000111222233332 2479999999987 444455567889999999987543211
Q ss_pred HHHHHHHHhcCCCceEEEEecccCC
Q 047623 207 DRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 207 ~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
..+...+. .....+|+|+++..
T Consensus 209 ~~l~~~~~---~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 209 QGIKKGVL---ELADIVVVNKADGE 230 (355)
T ss_dssp TTCCTTSG---GGCSEEEEECCCGG
T ss_pred HHHHHhHh---hcCCEEEEECCCCc
Confidence 00000000 12567999999864
No 50
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.91 E-value=7.6e-09 Score=88.69 Aligned_cols=46 Identities=24% Similarity=0.246 Sum_probs=41.2
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD 95 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~ 95 (340)
.++...|.++||||||||++.++|..++++|++|+++|+|+| ++..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q-~~~~ 49 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH-GRAE 49 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT-TCHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC-CChh
Confidence 456778889999999999999999999999999999999998 5543
No 51
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=98.61 E-value=5.6e-07 Score=82.03 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=112.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
.++.|.++|+-..+||||++..|...+.++|.++..+-...+ ..+. .. .....+...
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqt----g~~~--~~-----------~gi~~Dav~------ 207 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQT----GVML--EG-----------DGVALDAVR------ 207 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHH----HHHH--HS-----------CSCCGGGSB------
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccch----hhhh--hc-----------CCcchhHHH------
Confidence 378999999999999999999999999999999988532211 1110 00 000001100
Q ss_pred CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH----HHHHHh--cCCeEEEEeCCChhh
Q 047623 129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG----FITAIT--PANEAVLVTTPDITS 202 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~----~~~~l~--~ad~viiv~~~~~~s 202 (340)
++ +-......+...+ .++||+++|...+++..+ +...+. ..|.+|++..+...+
T Consensus 208 --~d--------------f~aG~ve~~~~~~----~~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~ 267 (349)
T 2obn_A 208 --VD--------------FAAGAVEQMVMRY----GKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTH 267 (349)
T ss_dssp --HH--------------HHHHHHHHHHHHH----TTTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCB
T ss_pred --HH--------------HHhhhHHHHHHHh----ccCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCce
Confidence 00 0111233344433 347999999999976422 233443 457899999987777
Q ss_pred H-----------HHHHHHHHHHHh-----cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCC
Q 047623 203 L-----------RDADRVTGLLEC-----DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPED 259 (340)
Q Consensus 203 ~-----------~~~~~~~~~l~~-----~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d 259 (340)
+ +.+..+++.+.. .+.+..++++|.+..+... ...+++.+++.+|+|++..+.+.
T Consensus 268 i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~--~~~~~~~ie~~~glPv~d~~r~g 338 (349)
T 2obn_A 268 NGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYA--AKEAIAHTIAETGLPCTDVVRFG 338 (349)
T ss_dssp CSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHH--HHHHHHHHHHHHCSCEECHHHHC
T ss_pred ECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHH--HHHHHHHHHHHHCCCEEEEecCC
Confidence 7 888888888865 6778999999998876533 33468899999999999877543
No 52
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.60 E-value=5.5e-08 Score=99.41 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=62.2
Q ss_pred CCCEEEEcCCCCCCH------HHHHHHhcCC-eEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCccccccc
Q 047623 166 SPDFILIDCPAGIDA------GFITAITPAN-EAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDM 238 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~------~~~~~l~~ad-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~ 238 (340)
++|++||.+.+++.. ....+....+ -||+|++....++..+....+.+...+.+..++|+|+.....
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~------ 274 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVN------ 274 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGGCCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSCT------
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCchhH------
Confidence 699999999885421 2223333322 288889999999999999999998888999999999875432
Q ss_pred ccHHHHHHH----hCCceeEEecCChH
Q 047623 239 MSVLDIQEM----LGLALLGVIPEDSE 261 (340)
Q Consensus 239 ~~~~~i~~~----~g~~v~~~Ip~d~~ 261 (340)
.+.+.+. .++++++.+|+.+.
T Consensus 275 --~~~l~~~l~~~~~v~vLg~lP~~~~ 299 (831)
T 4a0g_A 275 --EVPLTSYLRNKVPVLVLPPVPKDPS 299 (831)
T ss_dssp --HHHHHHHTTTSSCEEEECCCCCCTT
T ss_pred --HHHHHHHHHhCCCceeeCCCCCCCH
Confidence 3333333 45566888998754
No 53
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.57 E-value=6.2e-07 Score=82.37 Aligned_cols=154 Identities=16% Similarity=0.097 Sum_probs=83.2
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceecc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVRD 125 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 125 (340)
.+.+.+|+++| ++|+||||+..+|+..++..|.+|.++|.|++..... .+++... ..+..
T Consensus 53 ~~~~~~i~i~G-~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~--------------~~~~~---- 113 (341)
T 2p67_A 53 CGNTLRLGVTG-TPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKT--------------RMNDL---- 113 (341)
T ss_dssp CSCSEEEEEEE-CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----------------------------CTT----
T ss_pred cCCCEEEEEEc-CCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccc--------------hHHhh----
Confidence 35678888885 9999999999999999999999999999999844322 1111100 00000
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHH
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRD 205 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~ 205 (340)
...++..+.+..... ........+.+.+......+|+++|+|||+.... ...+...+|.+++|+.++....
T Consensus 114 ~~~~~~~i~~~~~~~------~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~-~~~~~~~aD~vl~Vvd~~~~~~-- 184 (341)
T 2p67_A 114 ARAEAAFIRPVPSSG------HLGGASQRARELMLLCEAAGYDVVIVETVGVGQS-ETEVARMVDCFISLQIAGGGDD-- 184 (341)
T ss_dssp TTCTTEEEEEECC-----------CHHHHHHHHHHHHHHTTCSEEEEEEECCTTH-HHHHHTTCSEEEEEECC-------
T ss_pred ccCCCceeecCcccc------ccchhHHHHHHHHHHhhccCCCEEEEeCCCccch-HHHHHHhCCEEEEEEeCCccHH--
Confidence 001222222211110 1111223333433322234799999999986543 3345688999999998854321
Q ss_pred HHHHHHHHHhcCCCceEEEEecccCC
Q 047623 206 ADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 206 ~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
...+.... .+ ....+|+|+++..
T Consensus 185 ~~~l~~~~--~~-~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 185 LQGIKKGL--ME-VADLIVINKDDGD 207 (341)
T ss_dssp -CCCCHHH--HH-HCSEEEECCCCTT
T ss_pred HHHHHHhh--hc-ccCEEEEECCCCC
Confidence 10000000 01 1356899999864
No 54
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.24 E-value=2.1e-05 Score=71.58 Aligned_cols=165 Identities=19% Similarity=0.168 Sum_probs=93.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
+.+.++++.|. .|+||||+...||..+...|.+|++.+.|.........+ ..+ ..
T Consensus 127 ~~g~vi~lvG~-nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql----------~~~-~~------------- 181 (328)
T 3e70_C 127 EKPYVIMFVGF-NGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQL----------EEH-AK------------- 181 (328)
T ss_dssp CSSEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHH----------HHH-HH-------------
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHH----------HHH-HH-------------
Confidence 56789999966 889999999999999999999999999997633211100 000 00
Q ss_pred cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHHHH------HHhcCCeEEEEeCCC
Q 047623 128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGFIT------AITPANEAVLVTTPD 199 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~~------~l~~ad~viiv~~~~ 199 (340)
.-++.+++..... .........+.... ..++|++++|+++... ..... .....|..+++.++.
T Consensus 182 ~~gv~~v~q~~~~------~p~~~v~e~l~~~~---~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~ 252 (328)
T 3e70_C 182 RIGVKVIKHSYGA------DPAAVAYDAIQHAK---ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDAL 252 (328)
T ss_dssp HTTCEEECCCTTC------CHHHHHHHHHHHHH---HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred HcCceEEeccccC------CHHHHHHHHHHHHH---hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecH
Confidence 0122222111110 00111111121111 2269999999998542 11111 123578888887753
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623 200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253 (340)
Q Consensus 200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~ 253 (340)
.. ..+....+.+.+ .....++|+|+.+.... .-....+...++.|+.
T Consensus 253 t~--~~~~~~~~~~~~-~~~it~iilTKlD~~a~----~G~~l~~~~~~~~pi~ 299 (328)
T 3e70_C 253 AG--NAIVEQARQFNE-AVKIDGIILTKLDADAR----GGAALSISYVIDAPIL 299 (328)
T ss_dssp GT--THHHHHHHHHHH-HSCCCEEEEECGGGCSC----CHHHHHHHHHHTCCEE
T ss_pred HH--HHHHHHHHHHHH-hcCCCEEEEeCcCCccc----hhHHHHHHHHHCCCEE
Confidence 33 233333343432 23456899999987542 2234467777888876
No 55
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.22 E-value=1.8e-05 Score=75.53 Aligned_cols=168 Identities=14% Similarity=0.205 Sum_probs=91.9
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD 125 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 125 (340)
....+.+|+++|. .|+||||+...||..+...|.+|++.+.|......... +..+ .. +
T Consensus 289 ~i~~GeVI~LVGp-NGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQ----------L~~~-~~---------r- 346 (503)
T 2yhs_A 289 EGKAPFVILMVGV-NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ----------LQVW-GQ---------R- 346 (503)
T ss_dssp CSCTTEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHH----------HHHH-HH---------H-
T ss_pred eccCCeEEEEECC-CcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHH----------HHHH-HH---------h-
Confidence 3456789999955 79999999999999999888899999888652110000 0000 00 0
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH-H--HH------HHHh-----cCCe
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA-G--FI------TAIT-----PANE 191 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~-~--~~------~~l~-----~ad~ 191 (340)
.++.+++..... .. ...+.+.+......+||+||||+++.... . .. .++. ..+.
T Consensus 347 ---~~I~vV~Q~~~~------~p---~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~e 414 (503)
T 2yhs_A 347 ---NNIPVIAQHTGA------DS---ASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHE 414 (503)
T ss_dssp ---HTCCEECCSTTC------CH---HHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSE
T ss_pred ---cCceEEecccCc------CH---HHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCe
Confidence 112222211100 01 11122222222234799999999996521 1 11 1111 2457
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE
Q 047623 192 AVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG 254 (340)
Q Consensus 192 viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~ 254 (340)
++++..+... ...+ ...+.+.. .....++|+|+.+... ..-....+...++.++..
T Consensus 415 vLLvLDattG-q~al-~~ak~f~~-~~~itgvIlTKLD~ta----kgG~~lsi~~~~~~PI~f 470 (503)
T 2yhs_A 415 VMLTIDASTG-QNAV-SQAKLFHE-AVGLTGITLTKLDGTA----KGGVIFSVADQFGIPIRY 470 (503)
T ss_dssp EEEEEEGGGT-HHHH-HHHHHHHH-HTCCSEEEEECGGGCS----CCTHHHHHHHHHCCCEEE
T ss_pred eEEEecCccc-HHHH-HHHHHHHh-hcCCCEEEEEcCCCcc----cccHHHHHHHHHCCCEEE
Confidence 7878775432 2222 22333332 2345679999988654 222355677788888763
No 56
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=98.09 E-value=4e-06 Score=78.49 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=49.8
Q ss_pred CCCCEEEEEEcCCC---CCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCC
Q 047623 47 GETPRVVVITSGKG---GVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR 103 (340)
Q Consensus 47 ~~~~~iI~v~s~kG---GvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~ 103 (340)
++..|+|.|+|... |.||||+++|||..|++.|++|+++ .+.|++..+||++..
T Consensus 54 ~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~~~FGikgg 110 (557)
T 3pzx_A 54 KPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGPSFGIKGG 110 (557)
T ss_dssp SCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSHHHHHTCCC
T ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCccccCCCCCC
Confidence 45679999999999 9999999999999999999999998 888999999998754
No 57
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.95 E-value=0.00013 Score=65.75 Aligned_cols=41 Identities=39% Similarity=0.464 Sum_probs=36.7
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.+|+++| .+|+||||++..||..+...+.+|++.+.|..
T Consensus 101 ~g~vi~lvG-~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVG-VNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEEC-STTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 567999995 58999999999999999988889999999975
No 58
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.70 E-value=0.0002 Score=71.94 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=59.3
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
.|++.|||||+..+ ......+..+|.+|+|+++.......+....+.+...+.+ +.+++|+++..... .....++
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~~~~~--~~~~~~~ 157 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDRMGAN--FLKVVNQ 157 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCccccc--HHHHHHH
Confidence 59999999999754 4556778899999999998766555556666666655554 55889999875421 2223556
Q ss_pred HHHHhCCce
Q 047623 244 IQEMLGLAL 252 (340)
Q Consensus 244 i~~~~g~~v 252 (340)
+.+.++...
T Consensus 158 l~~~l~~~~ 166 (704)
T 2rdo_7 158 IKTRLGANP 166 (704)
T ss_pred HHHHhCCCc
Confidence 777777653
No 59
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.69 E-value=0.00048 Score=63.20 Aligned_cols=153 Identities=17% Similarity=0.120 Sum_probs=75.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVRDK 126 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 126 (340)
+...+|+++ +..|+||||+.-.|+..+...+.+|.++..|++..... .++| ....+... .
T Consensus 72 ~~~~~v~lv-G~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~--------------d~~rm~~~----~ 132 (349)
T 2www_A 72 PLAFRVGLS-GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLG--------------DKTRMTEL----S 132 (349)
T ss_dssp CSCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC------------------------------CCS----T
T ss_pred cCceEEEEE-cCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhc--------------hHHHHHHh----c
Confidence 346777777 88999999999999999988899999999998743321 1111 11111100 0
Q ss_pred ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623 127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA 206 (340)
Q Consensus 127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~ 206 (340)
..+...+-+.+....- . .. .......+..+. ...||++|+|+++-. .........+|.++.++.+....- .
T Consensus 133 ~~~~~~v~~~~~~~~l-g-g~-tr~~~~~~~~~~---~~~~~~iliDT~Gi~-~~~~~l~~~~d~vl~V~d~~~~~~--~ 203 (349)
T 2www_A 133 RDMNAYIRPSPTRGTL-G-GV-TRTTNEAILLCE---GAGYDIILIETVGVG-QSEFAVADMVDMFVLLLPPAGGDE--L 203 (349)
T ss_dssp TCTTEEEECC------------CTTHHHHHHHHH---HTTCSEEEEECCCC---CHHHHHTTCSEEEEEECCC-------
T ss_pred CCCCEEEEecCCcccc-c-cc-hHHHHHHHHhhc---cCCCCEEEEECCCcc-hhhhhHHhhCCEEEEEEcCCcchh--H
Confidence 0022221111100000 0 00 111111122221 237999999999843 223445678999999998764321 1
Q ss_pred HHHHHHHHhcCCCceEEEEecccCC
Q 047623 207 DRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 207 ~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
..+...+ ... ...+|+|+++..
T Consensus 204 ~~i~~~i--l~~-~~ivVlNK~Dl~ 225 (349)
T 2www_A 204 QGIKRGI--IEM-ADLVAVTKSDGD 225 (349)
T ss_dssp ---------CCS-CSEEEECCCSGG
T ss_pred HHhHHHH--Hhc-CCEEEEeeecCC
Confidence 1111111 112 346888998753
No 60
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.60 E-value=0.00021 Score=69.32 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=60.8
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
.+.+.|+|||+.. .......+..+|.+++|+............+.+.+...+.+ +.+++|+.+...... .....+
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~--~~~~~~ 157 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP--MELLDE 157 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH--HHHHHH
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH--HHHHHH
Confidence 5889999999964 45567788899999999998765455566666666655555 789999998754211 123567
Q ss_pred HHHHhCCcee
Q 047623 244 IQEMLGLALL 253 (340)
Q Consensus 244 i~~~~g~~v~ 253 (340)
+++.++.+..
T Consensus 158 i~~~l~~~~~ 167 (529)
T 2h5e_A 158 VENELKIGCA 167 (529)
T ss_dssp HHHHHCCEEE
T ss_pred HHHHhCCCcc
Confidence 7788876543
No 61
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.56 E-value=0.0041 Score=57.05 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=37.6
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.+.+|++.| ..|+||||++..||..+...+.+|++.+.|..
T Consensus 154 ~~~g~vi~lvG-~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 154 FRKPAVIMIVG-VNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp SSSSEEEEEEC-CTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cCCCeEEEEEc-CCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 45678999996 58999999999999999988889999988865
No 62
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.43 E-value=0.0056 Score=54.83 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=37.5
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.+.++++.| ..|+||||+...||..+...+.+|.+.+.|..
T Consensus 97 ~~~g~vi~lvG-~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 97 FRKPAVIMIVG-VNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp SSSCEEEEEEC-CTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cCCCcEEEEEc-CCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 45678999996 58999999999999999988889999988865
No 63
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.40 E-value=0.00024 Score=58.10 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=36.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
++++|.|+| ..|+||||++..|+..|.++|++|.++..|+.
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 467899987 55999999999999999999999999999986
No 64
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.38 E-value=0.0012 Score=60.67 Aligned_cols=41 Identities=37% Similarity=0.355 Sum_probs=35.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++.+. +++|+||||+|.++|..+++.|.+|++||++..
T Consensus 62 ~G~ii~I~-G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 62 MGRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp TTSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34566666 799999999999999999999999999999754
No 65
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.22 E-value=0.0007 Score=57.20 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=31.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++.+. +..|+||||++.++|. ..|.+|+++|.+.+
T Consensus 19 ~G~~~~i~-G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~ 56 (220)
T 2cvh_A 19 PGVLTQVY-GPYASGKTTLALQTGL---LSGKKVAYVDTEGG 56 (220)
T ss_dssp TTSEEEEE-CSTTSSHHHHHHHHHH---HHCSEEEEEESSCC
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHH---HcCCcEEEEECCCC
Confidence 34555555 8899999999999998 56889999999864
No 66
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.20 E-value=0.0077 Score=55.16 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=36.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.++.|.|. .|+||||++.++|..++..|.+|++||....
T Consensus 59 ~~G~i~~I~Gp-pGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 59 PRGRIVEIFGQ-ESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp ETTEEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred cCCcEEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 44577777755 8999999999999999999999999998865
No 67
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.18 E-value=0.0019 Score=58.02 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=51.7
Q ss_pred CCCEEEEcCCCCCC------------HHHHHHHhcCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 166 SPDFILIDCPAGID------------AGFITAITPANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 166 ~~D~VIiD~~~~~~------------~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
.+.++|+|||+... ......+..+|.++++++.+.. +.......++.+...+. .+.+|+|+++...
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~-pvilV~NK~Dl~~ 136 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK-PVIVVINKIDKIG 136 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCC-CEEEEEECGGGSS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCC-CEEEEEECccCCC
Confidence 47899999999642 2335567789999999988743 33333333666665443 5779999998641
Q ss_pred ccccccccHHHHHHHhC
Q 047623 233 IKGEDMMSVLDIQEMLG 249 (340)
Q Consensus 233 ~~~~~~~~~~~i~~~~g 249 (340)
...........+.+.++
T Consensus 137 ~~~~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 137 PAKNVLPLIDEIHKKHP 153 (308)
T ss_dssp SGGGGHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 11222223445666664
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.17 E-value=0.0059 Score=50.25 Aligned_cols=63 Identities=17% Similarity=0.082 Sum_probs=47.3
Q ss_pred CCEEEEcCCCC--CCHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhcCCCceEEEEeccc
Q 047623 167 PDFILIDCPAG--IDAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECDGIRDIKMVVNRVR 229 (340)
Q Consensus 167 ~D~VIiD~~~~--~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~vviN~~~ 229 (340)
+.+.|+|+|+. ........+..+|.++++.+.+. .+...+...+..+.......+.+|+|+.+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 78999999984 24455667788999999998754 45666666666666533367889999998
No 69
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.16 E-value=0.0029 Score=58.27 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=35.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++.|. +..|+||||+|.++|..+++.|.+|++||++..
T Consensus 73 ~G~li~I~-G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIY-GPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCcEEEEE-cCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 34566665 678899999999999999999999999999965
No 70
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.13 E-value=0.0058 Score=55.62 Aligned_cols=127 Identities=20% Similarity=0.157 Sum_probs=71.7
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc-hhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL-DLLLGLENRVNYTVVEVLNGDCRLDQALVRD 125 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 125 (340)
.+.+.+++++ +..|+||||+...|+..+...+.+|.++..|++.... ....+... .+... .
T Consensus 52 ~~~g~~v~i~-G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~--------------~i~~v-~-- 113 (337)
T 2qm8_A 52 TGRAIRVGIT-GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT--------------RMARL-A-- 113 (337)
T ss_dssp CCCSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG--------------GSTTG-G--
T ss_pred cCCCeEEEEE-CCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh--------------hheee-c--
Confidence 3566788888 7788999999999999998888899999988752211 01111110 00000 0
Q ss_pred cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCC
Q 047623 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPD 199 (340)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~ 199 (340)
..+++..-+.+.. ..+ ........+.+.......+|++||||++-... ...+...+|.++++..+.
T Consensus 114 -q~~~~~~~~~~~~-----~~l-~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~-~~~v~~~~d~vl~v~d~~ 179 (337)
T 2qm8_A 114 -IDRNAFIRPSPSS-----GTL-GGVAAKTRETMLLCEAAGFDVILVETVGVGQS-ETAVADLTDFFLVLMLPG 179 (337)
T ss_dssp -GCTTEEEECCCCC-----SSH-HHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC-HHHHHTTSSEEEEEECSC
T ss_pred -cCcccccccCccc-----ccc-cchHHHHHHHHHHHhcCCCCEEEEECCCCCcc-hhhHHhhCCEEEEEEcCC
Confidence 0123322211111 001 11222233333222234799999999995432 234457899999888764
No 71
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.13 E-value=0.003 Score=59.02 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=51.0
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|||+... ..+...+..+|.++++++.+........+.+..+...+.+.+.+++|+.+..
T Consensus 74 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 48899999998653 2344566789999999998766566677777777777777788999999864
No 72
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.85 E-value=0.009 Score=59.78 Aligned_cols=83 Identities=16% Similarity=0.107 Sum_probs=57.2
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
.+.+.|+|||+.. .......+..+|.+++|++.............+.+...+. .+.+|+|+++.... ......++
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~-p~ilviNK~Dl~~~--~~~~~~~~ 150 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGV-PRIVFVNKMDKLGA--NFEYSVST 150 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTC-CEEEEEECTTSTTC--CHHHHHHH
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCC-CEEEEEECCCcccc--chHHHHHH
Confidence 4889999999964 5666778889999999999865444444555556665554 46688999987542 11223556
Q ss_pred HHHHhCCc
Q 047623 244 IQEMLGLA 251 (340)
Q Consensus 244 i~~~~g~~ 251 (340)
+.+.++..
T Consensus 151 l~~~l~~~ 158 (693)
T 2xex_A 151 LHDRLQAN 158 (693)
T ss_dssp HHHHHCCC
T ss_pred HHHHhCCC
Confidence 77777754
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.85 E-value=0.015 Score=47.51 Aligned_cols=66 Identities=11% Similarity=-0.025 Sum_probs=41.1
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+++.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+... ....+.+|+|+.+..
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 68 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp EEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 3789999999954 333345567799888888764 45666666666665542 234678999999854
No 74
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.79 E-value=0.0021 Score=53.02 Aligned_cols=41 Identities=37% Similarity=0.460 Sum_probs=34.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.++.+|.+. +..|+||||++..||..+...|.++.++|.|.
T Consensus 11 ~~~~~i~l~-G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 11 EKGIVVWLT-GLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp SCCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 445667666 77899999999999999999999999998763
No 75
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.79 E-value=0.018 Score=46.61 Aligned_cols=65 Identities=9% Similarity=-0.037 Sum_probs=45.0
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..++..+...++.+... ....+.+|+|+.+-.
T Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 688999999854 334455677899999998775 45566666655555432 134678999999853
No 76
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.75 E-value=0.0068 Score=55.92 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=50.5
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEe-cccC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVN-RVRT 230 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN-~~~~ 230 (340)
++.+.|+|||+... ......+..+|.++++++ +......+.+.+..+...+.+.+.+++| +.+.
T Consensus 59 ~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 47799999999654 334556788999999999 7666777777777777778777688899 9987
No 77
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.74 E-value=0.018 Score=45.88 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=44.5
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc----CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD----GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..+...+....+.+... ....+.+|+|+.+-.
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 51 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp EEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred EEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 678999999955 334455677899999998875 44555566665555542 224578999999853
No 78
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.72 E-value=0.011 Score=59.00 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=57.4
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
.+.+.|+|||+..+ ......+..+|.+++|+++..............+...+.+ +.+++|+++.... .......+
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~--~~~~~~~~ 152 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGA--DLWLVIRT 152 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTC--CHHHHHHH
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCcccC--CHHHHHHH
Confidence 48899999999754 4556678899999999998765444555556666665554 5688999987532 11223556
Q ss_pred HHHHhCCc
Q 047623 244 IQEMLGLA 251 (340)
Q Consensus 244 i~~~~g~~ 251 (340)
+.+.++..
T Consensus 153 l~~~l~~~ 160 (691)
T 1dar_A 153 MQERLGAR 160 (691)
T ss_dssp HHHTTCCC
T ss_pred HHHHhCCC
Confidence 77777754
No 79
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.72 E-value=0.008 Score=47.82 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=45.7
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+... ....+.+|+|+.+-.
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 3788999999843 334456678899999998875 44566666666655442 234678999999853
No 80
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.70 E-value=0.019 Score=57.64 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=65.6
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
+|-+=|||||+..+ .....+|..+|.+++|++....-..++..+.+.+.+.+++ ..+++|+.++... +.....++
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp-~i~~iNKiDr~~a--~~~~~~~e 160 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVP-RIVYVNKMDRQGA--NFLRVVEQ 160 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCC-EEEEEECSSSTTC--CHHHHHHH
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEccccccCc--cHHHHHHH
Confidence 46778999999764 4557789999999999999877777888899998888886 4688999998542 22234667
Q ss_pred HHHHhCCcee
Q 047623 244 IQEMLGLALL 253 (340)
Q Consensus 244 i~~~~g~~v~ 253 (340)
+.+.++....
T Consensus 161 i~~~l~~~~~ 170 (709)
T 4fn5_A 161 IKKRLGHTPV 170 (709)
T ss_dssp HHHHHCSCEE
T ss_pred hhhhccccee
Confidence 7888875543
No 81
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.69 E-value=0.0095 Score=54.48 Aligned_cols=41 Identities=29% Similarity=0.268 Sum_probs=35.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++.+. +..|+||||++.++|..+++.|.+|+++|++..
T Consensus 60 ~G~iv~I~-G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 60 RGRVIEIY-GPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp TTSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 45567776 678999999999999999999999999999854
No 82
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.68 E-value=0.036 Score=43.77 Aligned_cols=65 Identities=9% Similarity=-0.037 Sum_probs=44.4
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+... ....+.+|+|+.+..
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 688999999854 334455677899999988775 45566666665555442 234678999999853
No 83
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.61 E-value=0.0023 Score=55.93 Aligned_cols=39 Identities=28% Similarity=0.519 Sum_probs=32.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+.+|.+. +-.|+||||+|..|+..|...|..++++|.|.
T Consensus 4 ~~lIvl~-G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 4 IMLIILT-GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 4677776 55999999999999999998999998887763
No 84
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=96.56 E-value=0.0089 Score=54.44 Aligned_cols=136 Identities=18% Similarity=0.261 Sum_probs=82.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW 128 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 128 (340)
.++.|.++|+-.++|||+++..|...+.++|.++..+-...+ ..+.+... +. ..+..
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqt----g~li~~~~--gv----------~~D~~------- 224 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQT----GILIGADA--GY----------VIDAV------- 224 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHH----HHHTTCSE--EC----------CGGGS-------
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCce----eeeeccCC--CC----------CCCce-------
Confidence 478999999999999999999999999999999988643322 11110000 00 00000
Q ss_pred CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH-----HHHHH--hcCCeEEEEeCCC--
Q 047623 129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG-----FITAI--TPANEAVLVTTPD-- 199 (340)
Q Consensus 129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~-----~~~~l--~~ad~viiv~~~~-- 199 (340)
....-......++..+. ++++|++|+...+++... ....+ ...|.+|+...+.
T Consensus 225 ---------------~~~~~ag~~e~~i~~~~---~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~ 286 (350)
T 2g0t_A 225 ---------------PADFVSGVVEKAVLKLE---KTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRD 286 (350)
T ss_dssp ---------------BGGGHHHHHHHHHHHHH---HTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCS
T ss_pred ---------------ecchhhHHHHhhHHHhh---hcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCc
Confidence 00011112233333332 347999999999976322 22233 3578888866553
Q ss_pred ---------h-hhHHHHHHHHHHHHhcCCCceEEE-Eec
Q 047623 200 ---------I-TSLRDADRVTGLLECDGIRDIKMV-VNR 227 (340)
Q Consensus 200 ---------~-~s~~~~~~~~~~l~~~~~~~~~vv-iN~ 227 (340)
. .+++...++++.+. +.+.++++ +|.
T Consensus 287 ~~~~~~~~~~~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 287 HFESFPEIPKKPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp SCTTCTTSSCCCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred cccCCCcccCCcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 2 56666666666665 56778888 887
No 85
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.52 E-value=0.0044 Score=50.79 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=36.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.|+++++|+| ..|+||||+...|...+...|++|..+..++.
T Consensus 4 ~~~~~i~i~G-~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 4 TMIPLLAFAA-WSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp -CCCEEEEEC-CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CcceEEEEEe-CCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4567888886 77999999999999999999999999999876
No 86
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.51 E-value=0.073 Score=43.76 Aligned_cols=65 Identities=9% Similarity=-0.039 Sum_probs=45.3
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..++..+...++.+.... ...+.+|+|+.+-.
T Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 678999999854 334455677899988888764 456666666666665421 34678999999864
No 87
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.50 E-value=0.0058 Score=56.95 Aligned_cols=66 Identities=20% Similarity=0.344 Sum_probs=49.2
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|||+... ..+...+..+|.+++++..+........+.+..+...+.+.+.+++|+.+..
T Consensus 65 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 65 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp SCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 58899999998643 2234445679999999998775556666666777777777778999999864
No 88
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.48 E-value=0.013 Score=52.55 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=31.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC--CCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARL--GFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~ 90 (340)
++.+ .+..|+||||++.+++..+++. |.+|++||....
T Consensus 30 iteI-~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 30 LLIL-AGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEE-EESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 4444 4679999999999999998876 889999998765
No 89
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.44 E-value=0.011 Score=50.46 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=31.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+.++.+ .+.-|+||||.+..++..++.+|.+|+++..-
T Consensus 12 G~i~li-tG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFI-TGPMFAGKTAELIRRLHRLEYADVKYLVFKPK 49 (223)
T ss_dssp CEEEEE-ECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cEEEEE-ECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 445544 47789999999999999999999999999543
No 90
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.38 E-value=0.028 Score=46.49 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=45.7
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..++..+...++.+... ....+.+|.|+.+-.
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 4788999999843 233345667899998888765 55677777777766543 123578999999853
No 91
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.24 E-value=0.027 Score=45.46 Aligned_cols=65 Identities=22% Similarity=0.093 Sum_probs=42.8
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-C--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-G--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-~--~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+... ......+..+|.++++...+ ..+...+....+.+... . ...+.+|.|+.+-.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 6788999998542 22334556799988888764 45666666666555432 1 23577999999853
No 92
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.17 E-value=0.032 Score=48.50 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=55.6
Q ss_pred CCEEEEcCCCCCC--H----------HHHHHH--hcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 167 PDFILIDCPAGID--A----------GFITAI--TPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~----------~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
.++.|+|+|+... . .....+ ..+|.++++++.+. ......+...+.+.+ ..+.+|+|+.+...
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~-~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELG-KPVVVALNMMDIAE 124 (256)
T ss_dssp EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSC-SCEEEEEECHHHHH
T ss_pred eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcC-CCEEEEEEChhcCC
Confidence 5788999998432 1 223344 67999999998755 444445555565544 35779999988532
Q ss_pred ccccccccHHHHHHHhCCceeEEec
Q 047623 233 IKGEDMMSVLDIQEMLGLALLGVIP 257 (340)
Q Consensus 233 ~~~~~~~~~~~i~~~~g~~v~~~Ip 257 (340)
.. ........+.+.+|.+++.+-.
T Consensus 125 ~~-~~~~~~~~l~~~lg~~vi~~SA 148 (256)
T 3iby_A 125 HR-GISIDTEKLESLLGCSVIPIQA 148 (256)
T ss_dssp HT-TCEECHHHHHHHHCSCEEECBG
T ss_pred cC-CcHHHHHHHHHHcCCCEEEEEC
Confidence 11 1223466788889988775443
No 93
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.06 E-value=0.02 Score=51.18 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=42.6
Q ss_pred CCCEEEEcCCCCCC----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECD-GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~ 231 (340)
.+.++++|||+... ......+..+|.++++++.+..--.....+.+.+... ....+.+|+|+++..
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 46789999999543 1234456789999999987532112224445566554 124577999999864
No 94
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.03 E-value=0.0093 Score=49.80 Aligned_cols=42 Identities=29% Similarity=0.302 Sum_probs=35.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.+|+++ +..|+||||++..|+..+...|.+|.+++.|..
T Consensus 20 ~~~~~i~i~-G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 20 AGRLVLGID-GLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SSSEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 455778877 668899999999999999888889999988865
No 95
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.96 E-value=0.02 Score=45.14 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=39.8
Q ss_pred CCEEEEcCCCCCC---------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 167 PDFILIDCPAGID---------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 167 ~D~VIiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
..+.|+|+|+... ......+..+|.++++.+....--.....+.+.+...+ ..+.+|.|+.+...
T Consensus 49 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 49 GRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKG-KPVILVATKVDDPK 122 (161)
T ss_dssp EEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHT-CCEEEEEECCCSGG
T ss_pred ceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcC-CCEEEEEECccccc
Confidence 4678899988543 12234457799999988876421112233444554433 34789999998643
No 96
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.92 E-value=0.0076 Score=49.46 Aligned_cols=38 Identities=32% Similarity=0.399 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
|++|.+. +-.|+||||++..|+..+...|+++..++.|
T Consensus 1 M~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 1 MKIGIVT-GIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 3567666 5678999999999999999889999888654
No 97
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.91 E-value=0.015 Score=53.06 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=32.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~ 90 (340)
.+.++.++ +..|+|||+++.++|...+. .|.+|++||++..
T Consensus 121 ~G~i~~I~-G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 121 SMAITEAF-GEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SSEEEEEE-CCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 34555555 78899999999999987654 5789999999864
No 98
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.85 E-value=0.0074 Score=52.34 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=32.8
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-----CCCcEEEEecCCC
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLAR-----LGFSVVAIDADVG 90 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-----~g~~VlliD~D~~ 90 (340)
....+.+|+++ +..|+||||+|..|+..+.. .+++|.++|+|.-
T Consensus 18 ~~~~~~iI~I~-G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 18 NGGEPFLIGVS-GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp ---CCEEEEEE-CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred cCCCcEEEEEE-CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 34556778877 77889999999999887653 2668999999854
No 99
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.84 E-value=0.023 Score=55.17 Aligned_cols=85 Identities=13% Similarity=0.175 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
+|.+=|||||+.. ......+|..+|.+++|+++...-..++..+.+.+...+++. .+++|+.++... .-.....+
T Consensus 99 ~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~-i~fINK~Dr~~a--d~~~~~~~ 175 (548)
T 3vqt_A 99 DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPV-MTFVNKMDREAL--HPLDVMAD 175 (548)
T ss_dssp TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCE-EEEEECTTSCCC--CHHHHHHH
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCce-EEEEecccchhc--chhHhhhh
Confidence 5888999999955 667788999999999999998888888889999999888864 589999998542 22234678
Q ss_pred HHHHhCCcee
Q 047623 244 IQEMLGLALL 253 (340)
Q Consensus 244 i~~~~g~~v~ 253 (340)
+.+.++..+.
T Consensus 176 i~~~l~~~~~ 185 (548)
T 3vqt_A 176 IEQHLQIECA 185 (548)
T ss_dssp HHHHHTSEEE
T ss_pred hhhhcCCceE
Confidence 8888886654
No 100
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.83 E-value=0.011 Score=53.54 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=32.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~ 90 (340)
+.++.+. +..|+|||+++.++|...+.. |.+|++||++..
T Consensus 107 G~i~~i~-G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 107 RTMTEFF-GEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEE-CCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4555555 778999999999999987654 789999999864
No 101
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.79 E-value=0.1 Score=42.57 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=44.5
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC----CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG----IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~----~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..++..+....+.+.... ...+.+|+|+.+-.
T Consensus 55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 3678999999844 334455667899999988875 445566555555554321 23578999999864
No 102
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.75 E-value=0.0087 Score=48.85 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=32.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
|+++++|+| ..|+||||++..|+..+...|+++..|..|..
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 467899997 77999999999999999999988888887754
No 103
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.74 E-value=0.014 Score=48.53 Aligned_cols=40 Identities=28% Similarity=0.290 Sum_probs=32.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..+.++.++ ++| .||||.|..+|...+.+|++|+++-+..
T Consensus 27 ~~g~i~v~t-G~G-kGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFT-GNG-KGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEE-SSS-SCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCceEEEEC-CCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 344555554 565 9999999999999999999999997775
No 104
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.74 E-value=0.075 Score=45.34 Aligned_cols=64 Identities=13% Similarity=0.262 Sum_probs=35.1
Q ss_pred CCEEEEcCCCCCCH---------HHHHHH----hcCCeEEEEeCCCh---hhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623 167 PDFILIDCPAGIDA---------GFITAI----TPANEAVLVTTPDI---TSLRDADRVTGLLECDGIRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~~~---------~~~~~l----~~ad~viiv~~~~~---~s~~~~~~~~~~l~~~~~~~~~vviN~~~~ 230 (340)
..+.|+|+|+..+. .....+ ..+|.+++|+..+. .....+..+.+.+.......+.+|+|+.+.
T Consensus 78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 56789999884421 112222 23588888887532 223333333333332222367899999875
No 105
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.71 E-value=0.012 Score=52.85 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=33.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+..+..|+||||++.++|..++..|.+|+++.+...
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 45555899999999999999999998999999999855
No 106
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.71 E-value=0.013 Score=50.12 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=35.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++.+. +..|+||||++.++|..+++.|.+|++++.+..
T Consensus 22 ~G~~~~i~-G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLS-GGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 34566666 668999999999999999999999999999865
No 107
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.69 E-value=0.19 Score=49.91 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=55.8
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
.+.+.|+|+|+... ......+..+|.+++++++.........++++.+...+.+ +.+++|+.+.. . ......++
T Consensus 73 ~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~--~~~~~~~~ 148 (665)
T 2dy1_A 73 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP-RMVVVTKLDKG-G--DYYALLED 148 (665)
T ss_dssp TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECGGGC-C--CHHHHHHH
T ss_pred CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCC-EEEEecCCchh-h--hHHHHHHH
Confidence 47789999998654 4456678889999999987655445566677777666654 45789999865 2 22233556
Q ss_pred HHHHhC
Q 047623 244 IQEMLG 249 (340)
Q Consensus 244 i~~~~g 249 (340)
+.+.++
T Consensus 149 l~~~l~ 154 (665)
T 2dy1_A 149 LRSTLG 154 (665)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 777777
No 108
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.65 E-value=0.0074 Score=53.71 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=32.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL 91 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 91 (340)
..+|+++ +..|+||||+|..|+..+...|.++.+||+|.-.
T Consensus 5 ~~iIgIt-G~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVT-GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEE-SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4578888 5778999999999999988778899999999754
No 109
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.64 E-value=0.017 Score=47.06 Aligned_cols=40 Identities=30% Similarity=0.362 Sum_probs=33.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+.+|+++ +-.|+||||++..|+..+...|.++..+|.|.
T Consensus 4 ~g~~i~l~-G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 45677777 67889999999999999988899998888664
No 110
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.63 E-value=0.014 Score=49.16 Aligned_cols=40 Identities=25% Similarity=0.151 Sum_probs=33.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+.|+++ +.+|+||||+..+|+..+... +++.+++.|+.
T Consensus 29 ~~~~i~i~-G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 29 GTVAVNIM-GAIGSGKTLLIERTIERIGNE-VKIGAMLGDVV 68 (221)
T ss_dssp TCEEEEEE-ECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCC
T ss_pred CceEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEecCCC
Confidence 45677777 588999999999999988655 79999999875
No 111
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.60 E-value=0.062 Score=52.66 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=44.9
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
.|.+.|+|||+..+. .....+..+|.+++|++...............+...+.+ +.+++|+.+...
T Consensus 72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~ 139 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPS 139 (600)
T ss_dssp EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccc
Confidence 378889999997643 345667899999999988654333333333334444554 779999998643
No 112
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.50 E-value=0.021 Score=47.47 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=34.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+.+.+|++. +-.|+||||++..||..+...|..+..+|.|.
T Consensus 23 ~~g~~i~l~-G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVT-GLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 456788877 77789999999999999987788777888764
No 113
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.45 E-value=0.017 Score=52.52 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=33.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+..+..|+||||++.++|..++..|.+|+++.+...
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS 85 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 44445889999999999999999999999999999865
No 114
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.41 E-value=0.022 Score=54.01 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=39.3
Q ss_pred CCCEEEEcCCCCCC----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
...+.|+|||+... .....++..+|.++++++....-...-..+.+.++..+ ..+.+|+|+++..
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~-~pvilV~NK~D~~ 144 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTK-KPVVLAVNKLDNT 144 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCC-SCEEEEEECC---
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcC-CCEEEEEECccch
Confidence 36778999988321 12334567799999998875432333345666665533 4577899999753
No 115
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.40 E-value=0.16 Score=41.17 Aligned_cols=61 Identities=10% Similarity=-0.105 Sum_probs=43.5
Q ss_pred CCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccC
Q 047623 167 PDFILIDCPAGIDAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~ 230 (340)
+.+.|+|+++..... .+..+|.++++...+ ..++..+...++.+.... ...+.+|.|+.+-
T Consensus 67 ~~l~i~Dt~G~~~~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (184)
T 3ihw_A 67 YLLLIRDEGGPPELQ---FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131 (184)
T ss_dssp EEEEEEECSSSCCHH---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred EEEEEEECCCChhhh---eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 667889998865433 567799988887764 556777777777776542 2356788999875
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.40 E-value=0.019 Score=48.53 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=34.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++++. +..|+||||++..++..++..|.+|++++.+..
T Consensus 22 ~G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 22 QGFFIALT-GEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp TTCEEEEE-CSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 34577776 778999999999999988887889999998764
No 117
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.38 E-value=0.015 Score=54.93 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=34.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL 91 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 91 (340)
+.+.++..|+||||++.++|..++..|.+|+++.+....
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 455558899999999999999999989999999999763
No 118
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=95.27 E-value=0.022 Score=55.00 Aligned_cols=42 Identities=31% Similarity=0.399 Sum_probs=39.2
Q ss_pred CCCEEEEEE-cCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVIT-SGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.|+|.|.|+ |.-+++||+.+|+.|+..|.++|++|..+.+||
T Consensus 10 ~~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~p 52 (550)
T 1vco_A 10 RPRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDP 52 (550)
T ss_dssp CCCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred cceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeeccc
Confidence 367899999 999999999999999999999999999999985
No 119
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.12 E-value=0.03 Score=49.95 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=36.8
Q ss_pred CCEEEEcCCCCC-CHH----------HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 167 PDFILIDCPAGI-DAG----------FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 167 ~D~VIiD~~~~~-~~~----------~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
+.++++|||+.. ... ....+..+|.++++++....+ .....+.+.+...+ ....+++|+.+...
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~-~~~~~i~~~l~~~~-~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT-PDDEMVLNKLREGK-APVILAVNKVDNVQ 130 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCC-HHHHHHHHHHHSSS-SCEEEEEESTTTCC
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCC-HHHHHHHHHHHhcC-CCEEEEEECcccCc
Confidence 567888988754 111 112345678888877764322 12234455555433 34668889998753
No 120
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.05 E-value=0.12 Score=51.54 Aligned_cols=64 Identities=11% Similarity=0.182 Sum_probs=42.2
Q ss_pred CCEEEEcCCCCC-----CHHHHHHHhcCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI-----DAGFITAITPANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~-----~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
++++|+|||+.. ...+...+..||.+++|+..+.. +......+.+.+...+. .+.+|+|+++..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~-~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGL-TVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCC-CEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCC-CEEEEEECcccc
Confidence 689999999832 23345667889999999987543 33333333344444343 488999999853
No 121
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.05 E-value=0.027 Score=47.49 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=32.6
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
....|+++ +.+|+||||+..+++..+... .++..|+.|+.
T Consensus 37 ~~~~i~iv-G~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFM-GAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEE-ESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 44677777 559999999999999887654 78999998875
No 122
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.00 E-value=0.024 Score=47.53 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDAD 88 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D 88 (340)
.++++|.+. +-.|+||||++..|+..+. ..|.++..+|.|
T Consensus 23 ~~~~~i~~~-G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 23 QRGLTIWLT-GLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp SSCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 445677777 6689999999999999998 779889988855
No 123
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=94.95 E-value=0.031 Score=53.90 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=37.6
Q ss_pred CEEEEEE-cCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVIT-SGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+|.|.|+ |.-+++|||++++.|+..|+++|++|..+.+||
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~p 43 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDP 43 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccc
Confidence 4788999 999999999999999999999999999999985
No 124
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.93 E-value=0.19 Score=39.25 Aligned_cols=66 Identities=11% Similarity=-0.007 Sum_probs=46.9
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+++.++|+|+.. .......+..+|.++++...+ ..+...+...++.+... ....+.+|+|+.+..
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 3788999999954 455566778899998888775 45566666666665542 134678999999854
No 125
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.23 Score=40.33 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=40.3
Q ss_pred CCCEEEEcCCCCCC--HHHHHHH----hcCCeEEEEeCCC--hhhHHHHHHHHHHHHh-c-----CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAI----TPANEAVLVTTPD--ITSLRDADRVTGLLEC-D-----GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l----~~ad~viiv~~~~--~~s~~~~~~~~~~l~~-~-----~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+... ......+ ..+|.++++.+.. ..++......+..+.. . ....+.+|+|+.+-.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 47788899988431 2222333 3489999988875 4556555544433321 1 234578999999864
No 126
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.77 E-value=0.035 Score=47.37 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=31.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG 90 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~ 90 (340)
+.+..+..|+|||++|.++|...+ +.|.+|++++++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 445558899999999999998755 55889999998865
No 127
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.65 E-value=0.12 Score=48.58 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=38.4
Q ss_pred CCEEEEcCCCCCC-----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623 167 PDFILIDCPAGID-----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~~-----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~ 230 (340)
..+.|+|||+... .....++..||.+++|++....--..-..+.+.++..+ ..+.+|+|+++.
T Consensus 49 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~-~p~ilv~NK~D~ 122 (439)
T 1mky_A 49 KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKST-VDTILVANKAEN 122 (439)
T ss_dssp EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHT-CCEEEEEESCCS
T ss_pred eEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcC-CCEEEEEeCCCC
Confidence 4568899998432 12344677899999999864321111123444455433 346799999875
No 128
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.57 E-value=0.029 Score=45.62 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEec
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDA 87 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~ 87 (340)
++.+.++ +..|+||||++..++..+. ..|.++..+++
T Consensus 38 g~~~~l~-G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFV-GSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEEC-CSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 5667666 7789999999999999998 77888777543
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.54 E-value=0.052 Score=51.06 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=36.1
Q ss_pred CCEEEEcCCCCCC----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.++.|+|||+... .....++..||.++++++....-...-..+.+.++..+ ..+.+|+|+++..
T Consensus 51 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~-~pvilv~NK~D~~ 124 (436)
T 2hjg_A 51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTK-KPVVLAVNKLDNT 124 (436)
T ss_dssp SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCC-SCEEEEEECCCC-
T ss_pred ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcC-CCEEEEEECccCc
Confidence 5678899988531 12234567899999998765321122234555555433 4678999999864
No 130
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.51 E-value=0.025 Score=46.20 Aligned_cols=37 Identities=32% Similarity=0.412 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
++|++. +-.|+||||++..||..+...|.+.-.+|.|
T Consensus 4 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVT-GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 456665 7789999999999999998777555556543
No 131
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.49 E-value=0.04 Score=45.62 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+.+.++ +..|+|||+++..++..+.+.|.++..+++.
T Consensus 55 ~~~~l~-G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLH-GSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 456565 7789999999999999999889999888654
No 132
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.48 E-value=0.082 Score=44.10 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=40.9
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhc----CCeEEEEeCCC--hhhHHHHHHHHHHHHhc------CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITP----ANEAVLVTTPD--ITSLRDADRVTGLLECD------GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~----ad~viiv~~~~--~~s~~~~~~~~~~l~~~------~~~~~~vviN~~~~~ 231 (340)
.+++.|+|+|+.. .......+.. +|.++++.+.. ..++......+..+... ....+.+|.|+.+-.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 4788999999854 2333444444 88888888775 24444444444333221 234578999999864
No 133
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.48 E-value=0.3 Score=39.42 Aligned_cols=64 Identities=8% Similarity=0.059 Sum_probs=37.7
Q ss_pred CCEEEEcCCCCC------------CHHHHHHHhc---CCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI------------DAGFITAITP---ANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~------------~~~~~~~l~~---ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
..++++|+|+-. .......+.. +|.++++++...........+.+.+...+ ..+.+|+|+.+..
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLN-IPFTIVLTKMDKV 146 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTT-CCEEEEEECGGGS
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcC-CCEEEEEEChhcC
Confidence 567899998821 0111223333 38888888765433333345556665544 3577899999854
No 134
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.46 E-value=0.057 Score=44.10 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
+|+++ +-.|+||||++..|+..+...|..++-.|
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFE-GIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45666 67889999999999999988898886554
No 135
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.43 E-value=0.11 Score=57.42 Aligned_cols=40 Identities=38% Similarity=0.369 Sum_probs=34.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.++.+. +..|+||||+|.++|..+++.|.+|+++|+...
T Consensus 383 G~lilI~-G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s 422 (2050)
T 3cmu_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 422 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence 3455554 889999999999999999999999999999876
No 136
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.43 E-value=0.054 Score=47.92 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=34.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 90 (340)
+.+.++++. +..|+||||++.++|..++.. |.+|++++.+..
T Consensus 33 ~~G~~~~i~-G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~ 75 (296)
T 1cr0_A 33 RGGEVIMVT-SGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES 75 (296)
T ss_dssp CTTCEEEEE-ESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC
T ss_pred CCCeEEEEE-eCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC
Confidence 344566666 778899999999999999876 889999988753
No 137
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.41 E-value=0.045 Score=51.64 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=32.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG 90 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~ 90 (340)
+.+..+..|+|||+++.++|...+. .|.+|+++++...
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP 240 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 4444588999999999999999997 4899999999854
No 138
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.40 E-value=0.04 Score=53.46 Aligned_cols=41 Identities=29% Similarity=0.302 Sum_probs=34.7
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+.+.+|.++ +..|+||||+|..|+..+...|.++.++|.|.
T Consensus 370 ~~~~~I~l~-G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 370 KQGFCVWLT-GLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp GCCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ccceEEEcc-CCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 445677776 67789999999999999999999999999773
No 139
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.33 E-value=0.055 Score=51.17 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=33.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~ 90 (340)
+.++.+ .+..|+||||++.++|..++. .|.+|+++++...
T Consensus 203 G~liiI-~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 203 SDLIIV-AARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp TCEEEE-ECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 344444 488999999999999999986 6899999999865
No 140
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=94.31 E-value=0.14 Score=49.46 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=61.4
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
.+.+.|+|||+.. ...+...+..+|.+++|++...........+.+.+...+. .+.+|+|+.+.... ......++
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~i-PiivviNK~Dl~~~--~~~~~l~e 157 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHT-PIMTFINKMDRDTR--PSIELLDE 157 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTC-CEEEEEECTTSCCS--CHHHHHHH
T ss_pred CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCC-CEEEEEeCCCCccc--cHHHHHHH
Confidence 4889999999954 4666778889999999999876555556666777766655 46789999987431 12233667
Q ss_pred HHHHhCCcee
Q 047623 244 IQEMLGLALL 253 (340)
Q Consensus 244 i~~~~g~~v~ 253 (340)
+++.++....
T Consensus 158 i~~~l~~~~~ 167 (528)
T 3tr5_A 158 IESILRIHCA 167 (528)
T ss_dssp HHHHHCCEEE
T ss_pred HHHhhCCCce
Confidence 7888886544
No 141
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.28 E-value=0.21 Score=54.41 Aligned_cols=41 Identities=37% Similarity=0.355 Sum_probs=35.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++.|. +..|+||||+|.++|...++.|.+|++||++..
T Consensus 382 ~G~lilI~-G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s 422 (1706)
T 3cmw_A 382 MGRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 422 (1706)
T ss_dssp TTSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CCcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 34455555 889999999999999999999999999999976
No 142
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.26 E-value=0.063 Score=44.70 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=29.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
+++|++. +-.|+||||++..|+..+...|.+|..++
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 9 GALIVLE-GVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 4577777 56789999999999999998899885543
No 143
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.26 E-value=0.07 Score=45.03 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=32.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+.+.++ +..|+|||+++..++..+...|.++..++++.
T Consensus 52 ~~~~ll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 52 VQAIYLW-GPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 4566666 67799999999999999999999999998754
No 144
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.25 E-value=0.18 Score=40.26 Aligned_cols=66 Identities=15% Similarity=0.071 Sum_probs=47.4
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..++..+...++.+.... ...+.+|.|+.+..
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 3688999999854 333455677899999998874 456677777777776543 23577899998863
No 145
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.20 E-value=0.23 Score=39.55 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=46.3
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-----CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-----GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++.+.+ ..++..+...++.+... +...+.+|.|+.+-.
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred EEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 788999999854 344566778899999999875 44666666666666542 344478899999864
No 146
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.17 E-value=0.031 Score=53.60 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=33.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG 90 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 90 (340)
+.+..+..|+|||+++.++|..++.. |.+|+++++...
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 44555889999999999999999987 999999999875
No 147
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.15 E-value=0.072 Score=43.66 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
.|++. +-.|+||||++..|+..+...|.+|...+.
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 45666 677899999999999999999999976543
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.08 E-value=0.092 Score=43.80 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=34.8
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.+.+|++. +..|+||||++..|+..+...|.++..|..|..
T Consensus 19 ~~~g~~v~I~-G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 19 QPGRQLVALS-GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CCSCEEEEEE-CCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCCeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 3556788888 677899999999999999876777888887753
No 149
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.00 E-value=1.6 Score=34.91 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=38.2
Q ss_pred CCEEEEcCCCCCCH--------HHHHHHh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623 167 PDFILIDCPAGIDA--------GFITAIT--PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~~~--------~~~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~ 230 (340)
+.+.|+|+|+.... .....+. .+|.++.+++.. +.......++.+...+. .+.+|.|+.+.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~-piilv~nK~Dl 124 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDAT--ALERNLYLTLQLMEMGA-NLLLALNKMDL 124 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGG--GHHHHHHHHHHHHTTTC-CEEEEEECHHH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecch--hHHHHHHHHHHHHhcCC-CEEEEEEhhhc
Confidence 56788899885421 2233333 489888887654 45555556666655433 46788999874
No 150
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.96 E-value=0.12 Score=42.76 Aligned_cols=38 Identities=16% Similarity=0.006 Sum_probs=32.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
..++++.++ +.-|+||||.+..+|..+..+|++|+++-
T Consensus 6 ~~g~i~v~~-G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIV-GPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 345666666 55688999999999999999999999996
No 151
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=93.93 E-value=0.096 Score=54.92 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=47.6
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|||+.... .+...+..+|.+|+|+..+......+.+.+..+...+.+.+.+++|+.+..
T Consensus 358 ~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 358 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 478999999995432 223345679999999988765444555566666666777788999999864
No 152
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.88 E-value=0.096 Score=43.49 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
++++|+++ +-.|+||||++..|+..+...+.++.++.
T Consensus 9 ~~~~I~l~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFE-GLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34677777 56689999999999999998888885544
No 153
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.85 E-value=0.042 Score=45.57 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=26.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+++++|++. +-.|+||||++..|+..+ | ..++|.|.
T Consensus 16 ~~~~~I~l~-G~~GsGKSTla~~L~~~l---g--~~~i~~d~ 51 (202)
T 3t61_A 16 RFPGSIVVM-GVSGSGKSSVGEAIAEAC---G--YPFIEGDA 51 (202)
T ss_dssp CCSSCEEEE-CSTTSCHHHHHHHHHHHH---T--CCEEEGGG
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CEEEeCCc
Confidence 445677766 778899999999998876 3 34566664
No 154
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.83 E-value=0.14 Score=41.61 Aligned_cols=66 Identities=9% Similarity=-0.017 Sum_probs=47.4
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+.... ...+.+|+|+.+-.
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 3678999999843 333455677899999998874 556777777777776542 34678999999864
No 155
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.83 E-value=0.071 Score=42.18 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=32.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.+..+.++ +..|+||||++..++..+...|.++..++..
T Consensus 35 ~g~~~~l~-G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVW-GEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEE-SSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 34567776 6789999999999999998888888888764
No 156
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=93.81 E-value=0.071 Score=45.74 Aligned_cols=43 Identities=28% Similarity=0.487 Sum_probs=38.6
Q ss_pred CCCEEEEEEcCC-CCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGK-GGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~k-GGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+||-|.|+|+- .|.||-.+|++++..|..+|++|..+.+||.
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPY 64 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY 64 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECB
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCc
Confidence 446888888776 8999999999999999999999999999984
No 157
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.76 E-value=0.044 Score=44.30 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=24.0
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
++| +.++-.|+||||++..||..+ +.....+|.|
T Consensus 4 ~~i-~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMI-ILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp CEE-EEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred eEE-EEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 444 445778999999999988765 3455555565
No 158
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.74 E-value=0.36 Score=38.25 Aligned_cols=66 Identities=11% Similarity=-0.036 Sum_probs=47.2
Q ss_pred CCCEEEEcCCCC--CCHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAG--IDAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~--~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+. ........+..+|.++++...+ ..+...+...++.+.... ...+.+|.|+.+-.
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 367899999984 3455667788899999998875 455666666666665432 24578999998864
No 159
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.71 E-value=0.15 Score=41.54 Aligned_cols=66 Identities=14% Similarity=0.045 Sum_probs=47.7
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+.... ...+.+|.|+.+-.
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 3788999999853 334456678899999998874 456677777777776543 34677899999863
No 160
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.69 E-value=0.039 Score=44.93 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=24.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+++.|.++ +-.|+||||++..||..+ |.. ++|.|
T Consensus 4 ~~~~i~l~-G~~GsGKst~a~~La~~l---~~~--~i~~d 37 (185)
T 3trf_A 4 NLTNIYLI-GLMGAGKTSVGSQLAKLT---KRI--LYDSD 37 (185)
T ss_dssp -CCEEEEE-CSTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence 35667766 558999999999998876 333 45555
No 161
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.67 E-value=0.49 Score=40.54 Aligned_cols=65 Identities=8% Similarity=-0.023 Sum_probs=37.1
Q ss_pred CCCEEEEcCCCCCC----------HHHHHHH----hcCCeEEEEeCCChhhHHHHHHHHHHHHhc---C--CCceEEEEe
Q 047623 166 SPDFILIDCPAGID----------AGFITAI----TPANEAVLVTTPDITSLRDADRVTGLLECD---G--IRDIKMVVN 226 (340)
Q Consensus 166 ~~D~VIiD~~~~~~----------~~~~~~l----~~ad~viiv~~~~~~s~~~~~~~~~~l~~~---~--~~~~~vviN 226 (340)
...++|+|||+..+ ......+ ..+|.+++|+..+.... ....+++.+... + ...+.++.|
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEc
Confidence 36789999998432 1122222 67999999988764322 223334444331 1 134667788
Q ss_pred cccCC
Q 047623 227 RVRTD 231 (340)
Q Consensus 227 ~~~~~ 231 (340)
+.+-.
T Consensus 148 K~Dl~ 152 (247)
T 3lxw_A 148 KEDLA 152 (247)
T ss_dssp GGGGT
T ss_pred hHhcC
Confidence 87753
No 162
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.66 E-value=0.079 Score=52.08 Aligned_cols=40 Identities=30% Similarity=0.362 Sum_probs=33.9
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
++.+|.++ +-.|+||||+|..|+..|.++|.++..+|.|.
T Consensus 51 ~g~lIvLt-GlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 45666666 67899999999999999999999999888664
No 163
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=93.64 E-value=0.1 Score=49.05 Aligned_cols=65 Identities=18% Similarity=0.360 Sum_probs=48.6
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhH-------HHHHHHHHHHHhcCCCceEEEEecccC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSL-------RDADRVTGLLECDGIRDIKMVVNRVRT 230 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~vviN~~~~ 230 (340)
++.++|+|||+... ..+...+..||.+++++..+.... ....+.+..+...+.+.+.+++|+.+.
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 57899999999643 233445678999999999876543 356666666777777778899999986
No 164
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.60 E-value=0.09 Score=45.41 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=16.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHH
Q 047623 50 PRVVVITSGKGGVGKTTTTANVG 72 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA 72 (340)
...|+++ +..|+||||+.-.|.
T Consensus 22 ~~~I~lv-G~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 22 ELRIILV-GKTGTGKSAAGNSIL 43 (260)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHh
Confidence 4556666 589999999987764
No 165
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=93.52 E-value=0.11 Score=48.57 Aligned_cols=52 Identities=31% Similarity=0.476 Sum_probs=42.7
Q ss_pred CCCCEEEEEEcC---CCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc
Q 047623 47 GETPRVVVITSG---KGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE 101 (340)
Q Consensus 47 ~~~~~iI~v~s~---kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~ 101 (340)
++.+|.|.|++- .-|.||||++..|+..|.+.|+++.+. .+.|++.-.||++
T Consensus 40 ~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~---lRePSlGP~FGiK 94 (543)
T 3do6_A 40 HEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT---LREPSLGPTLGLK 94 (543)
T ss_dssp SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCHHHHHHSC
T ss_pred CCCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE---EecCCCCCcCCcc
Confidence 356888888765 459999999999999999999999765 4448888888876
No 166
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.50 E-value=0.29 Score=39.68 Aligned_cols=112 Identities=12% Similarity=0.049 Sum_probs=67.1
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCCcccccccccH
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTDMIKGEDMMSV 241 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~~~~~~~~~~~ 241 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..++..+...++.+.... ...+.+|.|+.+-...........
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 144 (196)
T 3tkl_A 65 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTA 144 (196)
T ss_dssp EEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHH
T ss_pred EEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHH
Confidence 678999999853 444566778899999998865 456666667777666542 235778899998543211121223
Q ss_pred HHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCC--CHHHHHHHHHHHHHHhcccc
Q 047623 242 LDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPP--TLAGLAFEQAAWRLVEQDSM 298 (340)
Q Consensus 242 ~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~--s~~~~~~~~la~~i~~~~~~ 298 (340)
..+.+.++.+ ++....+ ......+..|++.+..+...
T Consensus 145 ~~~~~~~~~~--------------------~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 145 KEFADSLGIP--------------------FLETSAKNATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHTTCC--------------------EEEECTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCc--------------------EEEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 3444444433 3333222 23556667777777766543
No 167
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.47 E-value=0.085 Score=51.45 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEecCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLG-FSVVAIDADV 89 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g-~~VlliD~D~ 89 (340)
.+.+.+|.++ +-.|+||||+|..|+..|..+| .++.++|.|.
T Consensus 393 gq~~~~I~l~-GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 393 ATQGFTIFLT-GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp TTCCEEEEEE-CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cccceEEEee-cCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 4556677777 6677999999999999999888 8999998764
No 168
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.44 E-value=0.28 Score=38.47 Aligned_cols=66 Identities=15% Similarity=0.027 Sum_probs=46.0
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..++..+...++.+..... ..+.+|.|+.+-.
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 3778999999854 334456678899999998875 4566777777766665432 2455677999853
No 169
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.41 E-value=0.14 Score=41.61 Aligned_cols=66 Identities=9% Similarity=-0.001 Sum_probs=47.9
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..++..+..+++.+.... ...+.+|.|+.+-.
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 4778999998832 334456678899999998875 566777777777776643 24577889999853
No 170
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.38 E-value=0.075 Score=43.29 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=26.4
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
..|+++|+++ +-.|+||||++..|+..+ | ...+|.|
T Consensus 3 ~~~~~~I~l~-G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 3 KSKPNVVFVL-GGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCCCEEEEEE-ESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CCcCcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 3466777777 667899999999998765 3 3456665
No 171
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.38 E-value=1.4 Score=36.87 Aligned_cols=65 Identities=9% Similarity=0.137 Sum_probs=39.4
Q ss_pred CCEEEEcCCCCCC----------HH-HHHHHhcCCeEEEEeCCChh-h--HHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID----------AG-FITAITPANEAVLVTTPDIT-S--LRDADRVTGLLECD-GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~----------~~-~~~~l~~ad~viiv~~~~~~-s--~~~~~~~~~~l~~~-~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+... .. .......+|.++++.+.+.. + ......+++.+... ....+.+|+|+.+-.
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 155 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKC 155 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGC
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccC
Confidence 6788999998631 11 12234567888888876532 2 23334555555543 234578999999853
No 172
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=93.36 E-value=0.043 Score=54.33 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
+|.+-|||||+..+ .....++..+|.+++|++....-..++..+.+.+...+++. .+++|+.++... +......+
T Consensus 66 ~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~-i~~INKmDr~~a--~~~~~~~~ 142 (638)
T 3j25_A 66 NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT-IFFINKIDQNGI--DLSTVYQD 142 (638)
T ss_dssp SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSC-EECCEECCSSSC--CSHHHHHH
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCe-EEEEeccccccC--CHHHHHHH
Confidence 57788999999765 45577899999999999997776777888899998888876 477999987542 22234667
Q ss_pred HHHHhCCce
Q 047623 244 IQEMLGLAL 252 (340)
Q Consensus 244 i~~~~g~~v 252 (340)
+.+.++..+
T Consensus 143 i~~~l~~~~ 151 (638)
T 3j25_A 143 IKEKLSAEI 151 (638)
T ss_dssp HHHTTCCCC
T ss_pred HHHHhCCCc
Confidence 778777543
No 173
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.31 E-value=0.21 Score=40.07 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHH-------CCCcEEEEec
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLAR-------LGFSVVAIDA 87 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-------~g~~VlliD~ 87 (340)
+.+.++ +..|+|||+++..++..+.. .+.++..+++
T Consensus 44 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 44 NNPVLI-GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CceEEE-CCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 445555 78899999999999999876 3455555544
No 174
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.30 E-value=0.12 Score=46.43 Aligned_cols=42 Identities=31% Similarity=0.304 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHH--CCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLAR--LGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~--~g~~VlliD~D~~ 90 (340)
+.+.+|++. +..|+||||++..|+..+.. .+.+|.++..|..
T Consensus 90 ~~p~iigI~-GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPYIIGIA-GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCEEEEEE-CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 445677777 77789999999999998875 3568999999864
No 175
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=93.22 E-value=0.075 Score=50.86 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=42.8
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
+.+.|+|||+... ......+..+|.+++++..+......+.+.+..+...+.+ +.+++|+.+..
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~ 116 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKP 116 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSS
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEecccc
Confidence 5668899999542 2223345679999999977654344444555555555665 78999999864
No 176
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.17 E-value=0.23 Score=40.04 Aligned_cols=66 Identities=14% Similarity=0.014 Sum_probs=46.7
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+.... ...+.+|+|+.+-.
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3788999999854 233445567899999998874 556666677777665432 34678999999864
No 177
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.16 E-value=0.11 Score=44.18 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=34.4
Q ss_pred CCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623 44 ELAGETPRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG 90 (340)
Q Consensus 44 ~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~ 90 (340)
++....++.|+|. +-.|+||||++..|+..|.. .|++|.++--.|.
T Consensus 15 ~~~~~~~~~i~~~-G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 15 QTQGPGSMFITFE-GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp ----CCCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred cccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 3445567777777 66789999999999999999 8999887545554
No 178
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.15 E-value=0.64 Score=36.15 Aligned_cols=65 Identities=14% Similarity=0.044 Sum_probs=43.9
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++.... ..+...+....+.+... ....+.+|+|+.+-.
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 568999999854 333455667899988888764 44666666655555432 234678999999853
No 179
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.14 E-value=0.089 Score=43.19 Aligned_cols=37 Identities=24% Similarity=0.108 Sum_probs=30.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+++.++ +--|+||||++..++..+..+|.+|+++-..
T Consensus 4 ~i~vi~-G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVIT-GPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 455555 5667899999999999999999999997544
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.06 E-value=0.13 Score=44.83 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=37.8
Q ss_pred CCCEEEEcCCCCCC-----HHHHHHHh------cCCeEEEEeCCChhhHHHH-HHHHHHHHhc-CC---CceEEEEeccc
Q 047623 166 SPDFILIDCPAGID-----AGFITAIT------PANEAVLVTTPDITSLRDA-DRVTGLLECD-GI---RDIKMVVNRVR 229 (340)
Q Consensus 166 ~~D~VIiD~~~~~~-----~~~~~~l~------~ad~viiv~~~~~~s~~~~-~~~~~~l~~~-~~---~~~~vviN~~~ 229 (340)
.+.+.|+|||+... ......+. .+|.++++...+..++... ..+++.+... +. ..+.+|+|+++
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~D 165 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 165 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcc
Confidence 46789999998532 22222222 5899999955443222221 2444444432 22 36889999997
Q ss_pred CC
Q 047623 230 TD 231 (340)
Q Consensus 230 ~~ 231 (340)
-.
T Consensus 166 l~ 167 (270)
T 1h65_A 166 FS 167 (270)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 181
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.03 E-value=0.38 Score=53.33 Aligned_cols=41 Identities=37% Similarity=0.355 Sum_probs=35.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.++++.++ +-.|+|||++|.++|...+++|.+|+++|++-.
T Consensus 1426 ~g~~vll~-GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 44566666 778999999999999999999999999999854
No 182
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.02 E-value=0.084 Score=46.81 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC--CcEEEE-ecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLG--FSVVAI-DADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g--~~Vlli-D~D~~ 90 (340)
+.+.+|+|. +..|+||||++..|+..+...| .++..+ ..|..
T Consensus 29 ~~~~ii~I~-G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFFS-GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEEE-CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 456778877 7778999999999999998654 444444 88853
No 183
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.01 E-value=0.11 Score=46.28 Aligned_cols=42 Identities=29% Similarity=0.256 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLA--RLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~ 90 (340)
+.+.+|+++ +..|+||||++..|+..+. -.+-+|.++++|-.
T Consensus 78 ~~g~iigI~-G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIA-GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEE-ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 556788888 5678899999999998886 33457999998864
No 184
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=92.99 E-value=0.23 Score=46.56 Aligned_cols=66 Identities=17% Similarity=0.299 Sum_probs=49.3
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|||+... ......+..+|.+++++..+........+.+..+...+.+.+.+++|+++..
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 46789999999653 3344557889999999998765555566666666666776788999999864
No 185
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.95 E-value=0.59 Score=44.05 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=42.7
Q ss_pred CCEEEEcCCCC---------CCHH----HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAG---------IDAG----FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~---------~~~~----~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
..+.|+|||+- .... ....+..||.++++++...........+.+.+...+ ..+.+|+|+++-.
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~-~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAG-KAVVIVVNKWDAV 319 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTT-CEEEEEEECGGGS
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcC-CCEEEEEEChhcC
Confidence 46788898882 1211 123567799999998876654455566666666644 4577999999864
No 186
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.92 E-value=0.11 Score=43.31 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.+|+++| ..|+||||++..|+..+.. ++.+++.|..
T Consensus 4 ~~~~~i~i~G-~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAG-GTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEE-STTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CCcEEEEEEC-CCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 4567889885 5689999999999887643 6889998864
No 187
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.74 E-value=0.074 Score=42.61 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=25.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
|+++|.++ +-.|+||||++..||..+ |.. ++|.|
T Consensus 1 m~~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~d 34 (173)
T 1e6c_A 1 MTEPIFMV-GARGCGMTTVGRELARAL---GYE--FVDTD 34 (173)
T ss_dssp CCCCEEEE-SCTTSSHHHHHHHHHHHH---TCE--EEEHH
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEccc
Confidence 45677777 568999999999998866 433 56766
No 188
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.72 E-value=0.12 Score=45.35 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=29.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHC----------CCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARL----------GFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~----------g~~VlliD~D~ 89 (340)
.+.++.+. +..|+||||++.+++..++.. +.+|++++...
T Consensus 29 ~G~i~~i~-G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 29 AGTVGALV-SPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TTSEEEEE-ESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 44566666 788999999999999977642 34677776654
No 189
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.67 E-value=0.13 Score=45.95 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=31.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D 88 (340)
.+.+.++ +..|+|||++|..+|..+. +.|.+|..+.+.
T Consensus 152 ~~~lll~-G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLY-GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 3455565 6789999999999999999 999999988764
No 190
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.59 E-value=0.63 Score=37.50 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=44.3
Q ss_pred CCCEEEEcCCCC--CCHHHHHHHhcCCeEEEEeCCChh----hHHHHHHHHHHHHhc----CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAG--IDAGFITAITPANEAVLVTTPDIT----SLRDADRVTGLLECD----GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~--~~~~~~~~l~~ad~viiv~~~~~~----s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+. ........+..+|.++++.+.... +......+.+++... ....+.+|.|+.+-.
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp EEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred ceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 377899999994 355566677889999999998733 233333333444332 224677999999864
No 191
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.50 E-value=0.65 Score=50.72 Aligned_cols=42 Identities=33% Similarity=0.286 Sum_probs=37.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+++|-+.|+ -|+||||+|.+.++...++|-.+++||+.-.
T Consensus 1429 prg~~iei~g~-~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~ 1470 (1706)
T 3cmw_A 1429 PMGRIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1470 (1706)
T ss_dssp ETTSEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CCCCEEEEEcC-CCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 45688999977 8899999999999998899999999999854
No 192
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.49 E-value=0.15 Score=42.10 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=26.5
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
++|++. +-.|+||||++..||..+...| +|...+
T Consensus 5 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 5 VLIAFE-GIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 566666 6789999999999999988777 665443
No 193
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.47 E-value=0.43 Score=39.36 Aligned_cols=65 Identities=14% Similarity=-0.097 Sum_probs=44.2
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHH-HHHHHHHhc-CCCceEEEEecccC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDAD-RVTGLLECD-GIRDIKMVVNRVRT 230 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~-~~~~~l~~~-~~~~~~vviN~~~~ 230 (340)
.+.+.|+|+|+.. .......+..+|.++++.+.+ ..++..+. .+++.+... ....+.+|.|+.+-
T Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 125 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125 (212)
T ss_dssp EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHh
Confidence 3778999999853 333344567899999998874 55666665 566666553 23457799999874
No 194
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.46 E-value=0.099 Score=44.34 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~ 90 (340)
+.+.++.+. +..|+||||++..+|...+. .+.+|+++|....
T Consensus 22 ~~G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~ 69 (243)
T 1n0w_A 22 ETGSITEMF-GEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 69 (243)
T ss_dssp ETTSEEEEE-CCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred cCCeEEEEE-CCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence 345577777 68899999999999986443 3678999998763
No 195
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=92.40 E-value=0.22 Score=46.25 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=50.7
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhh-HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITS-LRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
+.+.|+|||+... ..+...+..+|.+++++..+... ...+.+.+..+...+...+.+++|+.+..
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 6789999999643 33455667899999999987654 77777777777777777788999999864
No 196
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.39 E-value=0.11 Score=42.94 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=26.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
++.|++. +-.|+||||++..||..+ .|.++..++.
T Consensus 4 ~~~I~l~-G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFE-GLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 4567777 667899999999998876 4677766553
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.39 E-value=0.19 Score=40.29 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=26.6
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..+.+|+++ +-.|+||||++..|+..+ | ..++|.|.
T Consensus 6 ~~g~~i~l~-G~~GsGKSTl~~~l~~~~---g--~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLM-GVSGSGKSAVASEVAHQL---H--AAFLDGDF 41 (175)
T ss_dssp TTSEEEEEE-CSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred CCCcEEEEE-cCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence 345677777 777899999999998776 4 34667764
No 198
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.38 E-value=0.45 Score=37.29 Aligned_cols=65 Identities=12% Similarity=0.030 Sum_probs=46.0
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+..... ..+.+|.|+.+..
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 678999999853 333455678899999988765 4566777777777765433 3566788998864
No 199
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.35 E-value=0.37 Score=39.41 Aligned_cols=65 Identities=9% Similarity=-0.017 Sum_probs=46.1
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+... ......+..+|.++++...+ ..++..+...++.+.... ...+.+|.|+.+-.
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 6789999998542 23344567899999998875 456677777777776532 34677999999864
No 200
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=92.35 E-value=0.23 Score=46.97 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=48.1
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHH-------HHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLR-------DADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.++|+|||+.... .+...+..+|.++++++.+..... ...+.+..+...+.+.+.+++|+++..
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 478999999996543 233445779999999998865443 555566666666776788999999864
No 201
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.20 E-value=0.1 Score=43.28 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=29.0
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+++.+|+++ +..|+||||++..|+..+. .+.++|.|..
T Consensus 17 ~~~~~~~i~i~-G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 17 RGSKTFIIGIS-GVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CSCCCEEEEEE-ESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred cCCCCeEEEEE-CCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 34556788888 5568999999988776432 5788888853
No 202
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.17 E-value=0.75 Score=37.35 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=47.1
Q ss_pred CCCEEEEcCCCCCC-HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID-AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~-~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+... ......+..+|.++++...+ ..++..+...++.+... ....+.+|.|+.+..
T Consensus 75 ~~~~~l~Dt~G~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 75 VVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp EEEEEEEECCCCCCCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred EEEEEEEECCCCCcccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 37788999999664 45566678899999998875 45666666666666542 223578999999864
No 203
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.17 E-value=0.15 Score=46.21 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=27.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.++|+|. +-.|+||||+|..||..+. +.+|++|..
T Consensus 7 ~~lI~I~-GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIV-GPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CceEEEE-CCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 3566666 6688999999999998653 788999854
No 204
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.15 E-value=0.73 Score=37.23 Aligned_cols=66 Identities=15% Similarity=-0.057 Sum_probs=46.6
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+.... ...+.+|+|+.+-.
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 3678999999843 445566778899999988875 445666666666665532 24578999998853
No 205
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.13 E-value=0.47 Score=38.44 Aligned_cols=65 Identities=11% Similarity=-0.044 Sum_probs=46.2
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+.... ...+.+|.|+.+-.
T Consensus 70 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 678999999842 333456678899999998874 456666677776666532 24577899999863
No 206
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.10 E-value=0.4 Score=39.32 Aligned_cols=66 Identities=8% Similarity=-0.049 Sum_probs=46.6
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..++..+...++.+.... ...+.+|+|+.+-.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 3688999999853 233345567899999998875 456777777777776532 24577899999864
No 207
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.09 E-value=0.45 Score=37.83 Aligned_cols=65 Identities=9% Similarity=-0.003 Sum_probs=43.1
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+... ......+..+|.++++...+ ..+...+...++.+.... ...+.+|.|+.+-.
T Consensus 60 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp EEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 6789999998542 23344567899999998875 445666666666665432 24677999999864
No 208
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.05 E-value=0.05 Score=45.34 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
+|+|. +-.|+||||++..|+..+...|.+|.++..
T Consensus 2 ~I~i~-G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIE-GVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEE-EEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 45565 566899999999999999888888887753
No 209
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=92.04 E-value=0.026 Score=55.40 Aligned_cols=66 Identities=26% Similarity=0.308 Sum_probs=36.4
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhh-------HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITS-------LRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|||+... ..+...+..+|.+|+|+..+... ...+.+.+..+...+.+.+.+|+|+++..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 47889999999542 12233456789988888775421 34455566666677777788999999853
No 210
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.03 E-value=0.27 Score=38.64 Aligned_cols=64 Identities=9% Similarity=-0.010 Sum_probs=45.4
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~ 230 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+.... ...+.+|+|+.+-
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 120 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence 678999999842 333456677899999998875 446666666666665532 3467899999886
No 211
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.01 E-value=0.57 Score=38.41 Aligned_cols=65 Identities=11% Similarity=-0.060 Sum_probs=46.5
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++.+.+ ..++..+...++.+.... ...+.+|.|+.+-.
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 78 VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 788999999864 233455677899999999875 456667777777666532 24567889998864
No 212
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.01 E-value=1.6 Score=39.61 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=40.9
Q ss_pred CCEEEEcCCCCCCH-------H---HHHHH-hcCCeEEEEeCCChh---hHHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGIDA-------G---FITAI-TPANEAVLVTTPDIT---SLRDADRVTGLLECD-GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~~-------~---~~~~l-~~ad~viiv~~~~~~---s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~ 231 (340)
.++.++|||+.... . ....+ ..+|.++++++.+.. +......+++.+... +...+.+|.|+.+-.
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 56788899885321 1 11122 358999999986543 456656666666542 245677999999864
No 213
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.00 E-value=0.16 Score=41.90 Aligned_cols=36 Identities=39% Similarity=0.494 Sum_probs=26.6
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+.+.+|+++ +-.|+||||++..|+..+ | ...+|.|.
T Consensus 27 ~~g~~i~l~-G~~GsGKSTl~~~L~~~~---g--~~~i~~d~ 62 (200)
T 4eun_A 27 EPTRHVVVM-GVSGSGKTTIAHGVADET---G--LEFAEADA 62 (200)
T ss_dssp -CCCEEEEE-CCTTSCHHHHHHHHHHHH---C--CEEEEGGG
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHhh---C--CeEEcccc
Confidence 445677777 777899999999999877 4 34567664
No 214
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.99 E-value=0.1 Score=43.09 Aligned_cols=34 Identities=32% Similarity=0.348 Sum_probs=25.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.+++|++. +-.|+||||++..||..+ |.. .+|.|
T Consensus 24 ~~~~i~l~-G~~GsGKsTl~~~La~~l---~~~--~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLT-GYMGAGKTTLGKAFARKL---NVP--FIDLD 57 (199)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHc---CCC--EEcch
Confidence 45677776 678899999999999877 433 35555
No 215
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.99 E-value=0.13 Score=44.56 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=37.0
Q ss_pred CCCEEEEcCCCCCC-----HHHHHHHh------cCCeEEEEeCCChhhHHHH-HHHHHHHHhc-C---CCceEEEEeccc
Q 047623 166 SPDFILIDCPAGID-----AGFITAIT------PANEAVLVTTPDITSLRDA-DRVTGLLECD-G---IRDIKMVVNRVR 229 (340)
Q Consensus 166 ~~D~VIiD~~~~~~-----~~~~~~l~------~ad~viiv~~~~~~s~~~~-~~~~~~l~~~-~---~~~~~vviN~~~ 229 (340)
...+.|+|||+..+ ......+. .+|.+++|...+...+... ..+++.+... + ...+.+|+|+.+
T Consensus 83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~D 162 (262)
T 3def_A 83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQ 162 (262)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTT
T ss_pred CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcc
Confidence 35789999999532 22222232 6799999865543222222 2344444332 1 236789999987
Q ss_pred C
Q 047623 230 T 230 (340)
Q Consensus 230 ~ 230 (340)
-
T Consensus 163 l 163 (262)
T 3def_A 163 F 163 (262)
T ss_dssp C
T ss_pred c
Confidence 5
No 216
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.97 E-value=0.46 Score=37.62 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=45.3
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc--CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD--GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+... ....+.+|+|+.+-.
T Consensus 63 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp EEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 678999999853 333455678899999998874 45666666666666543 224577999998853
No 217
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.97 E-value=0.17 Score=48.72 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=32.8
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+.+.++.+-.|+||||+|..||..|...+.++.+++.|.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 344455588999999999999999998899999998874
No 218
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.94 E-value=0.21 Score=42.01 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=30.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
++.|+|. +-.|+||||.+..|+..|...|++|.+..
T Consensus 6 g~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLE-GPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 4566665 77789999999999999999999997654
No 219
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.93 E-value=0.23 Score=45.06 Aligned_cols=42 Identities=31% Similarity=0.353 Sum_probs=32.9
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC---CCcEEEEecCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARL---GFSVVAIDADV 89 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~---g~~VlliD~D~ 89 (340)
...+..+.++ +..|+||||++..++..+... +..++.+++..
T Consensus 42 ~~~~~~vli~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 42 EEKPNNIFIY-GLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp TCCCCCEEEE-ECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCCCeEEEE-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 3445566666 778999999999999988765 77888888754
No 220
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=91.87 E-value=0.25 Score=47.13 Aligned_cols=41 Identities=37% Similarity=0.587 Sum_probs=37.9
Q ss_pred CEEEEEEcCC-CCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGK-GGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~k-GGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+|-|.|+|+- .|.||-.+|++|+..|..+|++|..+.+||.
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpy 44 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPY 44 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcc
Confidence 6888888866 8999999999999999999999999999984
No 221
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.86 E-value=0.43 Score=39.25 Aligned_cols=64 Identities=11% Similarity=0.000 Sum_probs=45.5
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~ 230 (340)
+.+.|+|+|+.. .......+..+|.++++.... ..++..+...++.+.... ...+.+|+|+.+-
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 137 (213)
T 3cph_A 69 VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137 (213)
T ss_dssp EEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 678999999843 233456678899999998875 445666666666665432 2467899999986
No 222
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.85 E-value=0.19 Score=41.97 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=28.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
|++-|+|= +--|+||||.+..|+.+|. +|.+|.+.-
T Consensus 1 M~kFI~~E-G~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 1 MSAFITFE-GPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp -CEEEEEE-CCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 56777776 5558999999999999996 588887753
No 223
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.82 E-value=0.17 Score=48.52 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-C-CCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLAR-L-GFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~-g~~VlliD~D~ 89 (340)
+.+.+|.++ +-.|+||||++..||..|.. . |..+-++|.|.
T Consensus 393 ~~~~~I~l~-GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLG-NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEEC-TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEec-ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 344566665 66799999999999999997 5 57788999886
No 224
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=91.82 E-value=0.26 Score=46.25 Aligned_cols=66 Identities=23% Similarity=0.313 Sum_probs=49.2
Q ss_pred CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHH-------HHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLR-------DADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|||+.... .+...+..+|.++++++.+..+++ .+.+....+...+.+.+.+++|+.+..
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 588999999997653 234456789999999999876555 445555555666777788999999864
No 225
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.81 E-value=0.3 Score=39.15 Aligned_cols=65 Identities=11% Similarity=-0.023 Sum_probs=40.1
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+... ......+..+|.++++.+.+ ..++..+...++.+.... ...+.+|.|+.+-.
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp EEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred EEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 7789999998532 22234456799999998875 456677777777766532 24677999999864
No 226
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.78 E-value=0.16 Score=41.91 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=27.1
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
....+++|++. +-.|+||||++..|+..+ |. ..+|+|
T Consensus 11 ~~~~~~~I~l~-G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 11 SPDQVSVIFVL-GGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp CTTTCEEEEEE-CSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCCCcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 34556777777 677899999999988753 44 556766
No 227
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.77 E-value=0.61 Score=36.46 Aligned_cols=65 Identities=17% Similarity=-0.023 Sum_probs=46.1
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+.... ...+.+|.|+.+..
T Consensus 52 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 52 VKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 678999999853 344556678899999998775 456677766666665432 23567889998854
No 228
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.73 E-value=0.17 Score=47.77 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCh---hhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCC-cEEEEe
Q 047623 17 PSKTIKPLKPFSSK---SSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGF-SVVAID 86 (340)
Q Consensus 17 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~-~VlliD 86 (340)
+..+..+++|.+.. ..++..+......... +. . ..+..+..|+|||+++..++..|.+.|. +|+++-
T Consensus 11 ~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-~~-~-~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-KK-H-HVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp ----------CCSSCCCHHHHHHHHHHHHHHHS-SS-C-EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cCCCccccCCCccccCCHHHHHHHHHHHHHHhc-CC-C-EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 55556666666533 2344444332111101 11 2 4444578999999999999999999887 677763
No 229
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.71 E-value=0.67 Score=37.43 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=44.0
Q ss_pred CCEEEEcCCCCCC-HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-----CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID-AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-----GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~-~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+++... ......+..+|.++++...+ ..++..+...++.+... ....+.+|.|+.+-.
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 69 VHLRVMDTADLDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp EEEEEEECCC---CCCTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred EEEEEEECCCCCcchhHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 6788999998431 11245677899988888775 55777777666666543 234578999998863
No 230
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.71 E-value=0.33 Score=38.22 Aligned_cols=66 Identities=15% Similarity=0.021 Sum_probs=42.4
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc--CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD--GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+... ......+..+|.++++...+ ..+...+...++.+... ....+.+|.|+.+-.
T Consensus 54 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp EEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred EEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 36789999998542 22233456789999988874 45666666666666542 224577999998864
No 231
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.68 E-value=0.18 Score=40.38 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLAR 77 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~ 77 (340)
+.+.++ +..|+|||+++..++..+.+
T Consensus 44 ~~vll~-G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILL-GDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEE-SCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEE-CCCCCCHHHHHHHHHHHHHh
Confidence 445454 77899999999999999876
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.65 E-value=0.17 Score=41.20 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=25.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
..+++|.++ +..|+||||++..||..+ .| .-.+|+|
T Consensus 8 ~~~~~I~l~-G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 8 PKGINILIT-GTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp CSSCEEEEE-CSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 344567666 678999999998888752 23 4557776
No 233
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.65 E-value=0.11 Score=41.88 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=24.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
|++|++. +-.|+||||++..||..+ | ..++|.|
T Consensus 4 m~~i~i~-G~~GsGKsTla~~La~~l---~--~~~~d~d 36 (175)
T 1via_A 4 AKNIVFI-GFMGSGKSTLARALAKDL---D--LVFLDSD 36 (175)
T ss_dssp -CCEEEE-CCTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc---C--CCEEccc
Confidence 4566666 778999999999998765 3 3456765
No 234
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.63 E-value=0.17 Score=40.69 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=23.2
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+++|.+. +-.|+||||+|..|+.. ......+|.|
T Consensus 2 ~~~I~i~-G~~GsGKST~a~~L~~~----~~~~~~i~~d 35 (181)
T 1ly1_A 2 KKIILTI-GCPGSGKSTWAREFIAK----NPGFYNINRD 35 (181)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHH----STTEEEECHH
T ss_pred CeEEEEe-cCCCCCHHHHHHHHHhh----cCCcEEecHH
Confidence 3455554 78899999999988872 2245566654
No 235
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.61 E-value=0.73 Score=37.13 Aligned_cols=65 Identities=11% Similarity=-0.044 Sum_probs=45.0
Q ss_pred CCEEEEcCCCCCC---HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID---AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~---~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+... ......+..+|.++++.+.+ ..++..+...++.+... ....+.+|.|+.+..
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 69 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp EEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred EEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 6789999998532 23455677899999998864 45666666666655543 224578999999864
No 236
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.59 E-value=0.15 Score=41.60 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=20.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
++++|.+. +-.|+||||++..|+..+
T Consensus 4 ~~~~I~l~-G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVT-GHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHc
Confidence 34566665 677899999999999876
No 237
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.58 E-value=0.17 Score=43.73 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=24.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
++|++. +-.|+||||+|..||..+ |. .+++.|.
T Consensus 2 ~li~I~-G~~GSGKSTla~~La~~~---~~--~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIY-GPTCSGKTDMAIQIAQET---GW--PVVALDR 34 (253)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHH---CC--CEEECCS
T ss_pred eEEEEE-CCCCcCHHHHHHHHHhcC---CC--eEEeccH
Confidence 566665 678899999999998765 33 3567764
No 238
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.54 E-value=1.2 Score=35.08 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=42.3
Q ss_pred CCEEEEcCCCCCC----HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID----AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~----~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~ 231 (340)
+.+.++|+|+... ......+..+|.++++...+ ..++..+......+.... ...+.+|.|+.+-.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 6788999998543 22334456689888887764 567777777777666531 24578999999864
No 239
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.50 E-value=0.15 Score=40.68 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
++|.+. +-.|+||||++..||..+ |.. .+|.|.
T Consensus 2 ~~i~l~-G~~GsGKsT~~~~L~~~l---~~~--~i~~d~ 34 (173)
T 3kb2_A 2 TLIILE-GPDCCFKSTVAAKLSKEL---KYP--IIKGSS 34 (173)
T ss_dssp CEEEEE-CSSSSSHHHHHHHHHHHH---CCC--EEECCC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCe--eecCcc
Confidence 455555 778999999999888765 433 466664
No 240
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.48 E-value=0.096 Score=43.33 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
++|+++ +..|+||||++..||. + | +-++|+|.
T Consensus 2 ~~i~i~-G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 2 KRIGLT-GNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred eEEEEE-CCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 567777 5678999999988887 4 5 44566663
No 241
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.41 E-value=0.95 Score=35.21 Aligned_cols=66 Identities=11% Similarity=-0.007 Sum_probs=45.8
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.++|+|+.. .......+..+|.++++...+ ..++..+...++.+... ....+.+|.|+.+-.
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp EEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 3678999999853 445556677899999988764 45666666666555432 234578999999864
No 242
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.40 E-value=0.12 Score=42.02 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=24.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+++|+++ +-.|+||||+|..||..+ |.. ++|.|.
T Consensus 2 ~~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~D~ 35 (184)
T 2iyv_A 2 APKAVLV-GLPGSGKSTIGRRLAKAL---GVG--LLDTDV 35 (184)
T ss_dssp CCSEEEE-CSTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEeCch
Confidence 3456666 778999999999998865 444 567763
No 243
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.39 E-value=0.44 Score=40.05 Aligned_cols=39 Identities=13% Similarity=0.011 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
..+++..++ +.=|+||||.+..+|..+..+|++|+++-.
T Consensus 26 ~~G~l~vit-G~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 26 QNGWIEVIC-GSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp CSCEEEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 445666665 566889999999999999999999999864
No 244
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=91.28 E-value=0.31 Score=46.37 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=47.8
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhH-------HHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSL-------RDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+... ..+...+..+|.+++++..+.... ....+.+..+...+.+.+.+++|+++..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 58899999999643 334556778999999998876422 3555666666666777788999999854
No 245
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.26 E-value=0.11 Score=42.81 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=24.8
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
++|+++ +..|+||||++..||..+ | .-++|.|.
T Consensus 3 ~~i~i~-G~~GsGKst~~~~la~~l---g--~~~~d~d~ 35 (208)
T 3ake_A 3 GIVTID-GPSASGKSSVARRVAAAL---G--VPYLSSGL 35 (208)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--Cceeccch
Confidence 477777 677899999999998866 3 44567763
No 246
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.26 E-value=0.43 Score=37.90 Aligned_cols=65 Identities=11% Similarity=-0.042 Sum_probs=45.0
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC-CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG-IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...+..+.... ...+.+|.|+.+..
T Consensus 58 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp EEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred EEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 678999999842 333345567899999988764 556666666666665432 34567899999854
No 247
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.25 E-value=0.28 Score=44.54 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~ 90 (340)
..+..+.++ +..|+||||++..++..+.+. +..+..+++...
T Consensus 42 ~~~~~vll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 42 EKPSNALLY-GLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCCCCEEEC-BCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCcEEEE-CCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 444555555 788999999999999998765 677777877554
No 248
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.20 E-value=0.19 Score=41.38 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=25.5
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
..++.+|++. +-.|+||||+|..||..+ |.. ++|.|
T Consensus 17 ~~~~~~I~l~-G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 17 RGSHMRVLLL-GPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CCSCCEEEEE-CCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCCCeEEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 3444566666 778999999999998876 444 45654
No 249
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.20 E-value=0.25 Score=42.00 Aligned_cols=42 Identities=29% Similarity=0.256 Sum_probs=32.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~ 90 (340)
+.+.++++. +..|+||||++..++.... ..+..+.+++.+..
T Consensus 28 ~~G~~~~l~-GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 28 PEGTTVLLT-GGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp ETTCEEEEE-CCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCCcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 456788887 6788999999999997655 66778888887643
No 250
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.19 E-value=0.35 Score=40.08 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=44.2
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++.+.+ ..++..+...++.+... ....+.+|+|+.+..
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 4778999999843 233445677899999998874 44555555555544432 224577999999864
No 251
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.01 E-value=0.16 Score=43.81 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=28.0
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..++.+|.+. +-.|+||||++..|+..+ +..+.++|.|.
T Consensus 29 ~~~~~~i~l~-G~~GsGKSTla~~L~~~l---~~~~~~~~~D~ 67 (253)
T 2p5t_B 29 SKQPIAILLG-GQSGAGKTTIHRIKQKEF---QGNIVIIDGDS 67 (253)
T ss_dssp CSSCEEEEEE-SCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred ccCCeEEEEE-CCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence 3445555555 778999999999998765 33567778875
No 252
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.93 E-value=0.2 Score=41.38 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=26.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
...+|+++ +.-|+||||++..|+..+ |. -+||+|.
T Consensus 11 ~~~iIglt-G~~GSGKSTva~~L~~~l---g~--~vid~D~ 45 (192)
T 2grj_A 11 HHMVIGVT-GKIGTGKSTVCEILKNKY---GA--HVVNVDR 45 (192)
T ss_dssp CEEEEEEE-CSTTSSHHHHHHHHHHHH---CC--EEEEHHH
T ss_pred cceEEEEE-CCCCCCHHHHHHHHHHhc---CC--EEEECcH
Confidence 34678887 667899999998888754 54 5588874
No 253
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.93 E-value=0.18 Score=42.02 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHH-----HCC-CcEEEEecC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLA-----RLG-FSVVAIDAD 88 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la-----~~g-~~VlliD~D 88 (340)
++.++.|+ +..|+|||+.|..++..++ +.| .++.+..+|
T Consensus 4 ~~mi~l~t-G~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 4 MAEICLIT-GTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred ceeEEEEE-eCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 44566666 7788999999988876665 557 555555444
No 254
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.87 E-value=0.2 Score=45.70 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=32.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC--------CCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL--------GFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~--------g~~VlliD~D~ 89 (340)
..++.+.++ +.+|+|||+++..++..+.+. +..++.+++..
T Consensus 43 ~~~~~vll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 43 EVKFSNLFL-GLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCCCEEEEE-ECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCcEEEE-CCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 344566665 788999999999999998765 78888888754
No 255
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.87 E-value=0.84 Score=37.18 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=45.5
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~ 230 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+.... ...+.+|.|+.+-
T Consensus 77 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl 145 (199)
T 2p5s_A 77 TVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADI 145 (199)
T ss_dssp EEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGG
T ss_pred EEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 678999999854 334455677899999998875 556666666666666532 2457899999875
No 256
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=90.86 E-value=0.19 Score=43.18 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 43 PELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 43 ~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.....|+|++.|+|+.||.|+ .+|..|+++|.+|.++|-+..
T Consensus 15 ~~~~~~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 15 VPRGSHMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp -------CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred cccccccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 3445678899999999999887 588889999999999998765
No 257
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.86 E-value=1.2 Score=35.42 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=43.9
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHh---cCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLEC---DGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~---~~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..++..+...++.+.. .....+.+|.|+.+-.
T Consensus 66 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 66 AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp EEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 556779999853 344566678899999998775 4456666666555543 1223577999999854
No 258
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.78 E-value=0.14 Score=40.99 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=24.6
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
|+++|+++ +..|+||||++..||..+ |. .++|.|
T Consensus 3 ~~~~i~l~-G~~GsGKSTl~~~La~~l---~~--~~id~d 36 (173)
T 1kag_A 3 EKRNIFLV-GPMGAGKSTIGRQLAQQL---NM--EFYDSD 36 (173)
T ss_dssp CCCCEEEE-CCTTSCHHHHHHHHHHHT---TC--EEEEHH
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEecc
Confidence 34567777 667899999998888764 32 456765
No 259
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.70 E-value=0.25 Score=40.89 Aligned_cols=34 Identities=41% Similarity=0.467 Sum_probs=25.2
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
|+.+|+++ +..|+||||++..||. .|.. ++|.|.
T Consensus 1 m~~~i~l~-G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 1 MTYIVGLT-GGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 35678887 6778999999988876 4655 467764
No 260
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.69 E-value=0.17 Score=44.60 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=25.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
...+.++++-.|+||||++..|+..+. .....||.|
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D 67 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDND 67 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEech
Confidence 345666668899999999999987542 245667775
No 261
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.68 E-value=1.4 Score=39.30 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
..+-|.++ +..|+|||++|..+|..+ .+.....+++.
T Consensus 44 ~~~~iLL~-GppGtGKT~la~ala~~~--~~~~~~~i~~~ 80 (322)
T 1xwi_A 44 PWRGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISSS 80 (322)
T ss_dssp CCSEEEEE-SSSSSCHHHHHHHHHHHT--TSCEEEEEECC
T ss_pred CCceEEEE-CCCCccHHHHHHHHHHHc--CCCcEEEEEhH
Confidence 34566666 778999999999998875 25566666654
No 262
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.53 E-value=0.26 Score=42.17 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=28.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCc-EEEE
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFS-VVAI 85 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~-Vlli 85 (340)
++.|+|. +-.|+||||.+..|+..|...|.+ |.+.
T Consensus 27 ~~~i~~e-G~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIE-GLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEE-ESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4566666 566799999999999999999998 5554
No 263
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.36 E-value=0.34 Score=41.10 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=29.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI 85 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 85 (340)
.+++.|+|. +-.|+||||++..|+..+.. |.+|+..
T Consensus 24 ~~g~~i~i~-G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 24 AMSAFITFE-GPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCCEEEEEE-CCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCCeEEEEE-cCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 356777777 66789999999999999988 8888654
No 264
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.33 E-value=0.7 Score=37.47 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=46.8
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++.+.+ ..+...+...++.+.... ...+.+|.|+.+-.
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 3788999999854 233455677899999998875 456666666666666543 24578999999853
No 265
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.32 E-value=0.48 Score=38.67 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=43.5
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-----CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-----GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+... ......+..+|.++++...+ ..++..+...++.+... ....+.+|.|+.+-.
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 36789999998632 22223456799999998874 45667777777777653 234678999998854
No 266
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.32 E-value=1.5 Score=34.12 Aligned_cols=66 Identities=14% Similarity=-0.017 Sum_probs=38.0
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.++|+++... ......+..+|.++++...+ ..++..+......+... ....+.+|.|+.+-.
T Consensus 48 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 48 EASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred EEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 36788999998542 23344567799888887664 55677777776666543 124577999999854
No 267
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.28 E-value=0.35 Score=41.38 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-----CCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-----GFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-----g~~VlliD~D~ 89 (340)
+.+.+|+++ +.-|+||||++..|+..+..- ..++.+++.|.
T Consensus 23 ~~g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 23 MRPFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp CCSEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 556789998 677889999999998877321 24677888774
No 268
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=90.27 E-value=0.23 Score=40.68 Aligned_cols=65 Identities=9% Similarity=-0.010 Sum_probs=42.8
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..++..+...++.+..... ..+.+|.|+.+-.
T Consensus 82 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred EEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 678999999843 223344567899999998865 5567777777777765432 4567888998854
No 269
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.26 E-value=0.32 Score=43.37 Aligned_cols=38 Identities=29% Similarity=0.387 Sum_probs=31.8
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.+.+.++ +..|+||||++..++..+...|.++..++++
T Consensus 37 ~~~lll~-G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 37 YNPIFIY-GSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CSSEEEE-CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3456666 6679999999999999999889999998865
No 270
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.24 E-value=0.22 Score=39.70 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=25.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.|++|+++ +-.|+||||++..||..| |.+ ++|+|.
T Consensus 6 ~~~~i~l~-G~~GsGKSTva~~La~~l---g~~--~id~D~ 40 (168)
T 1zuh_A 6 HMQHLVLI-GFMGSGKSSLAQELGLAL---KLE--VLDTDM 40 (168)
T ss_dssp --CEEEEE-SCTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred ccceEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 45788887 667899999999888765 444 467663
No 271
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.22 E-value=0.41 Score=39.64 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=26.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 58 GKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
+--|+||||.+..|+.+|.++|.+|.+...
T Consensus 7 G~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 666899999999999999999999988753
No 272
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.22 E-value=0.16 Score=45.46 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=31.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHH------------HCC----CcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLA------------RLG----FSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la------------~~g----~~VlliD~D~~ 90 (340)
.+.++.+. +..|+|||+++.++|...+ +.| .+|++||++..
T Consensus 97 ~g~i~~i~-G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 97 SQSVTEFA-GVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp TTEEEEEE-ESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 34555555 7789999999999998643 235 79999999864
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.18 E-value=0.24 Score=40.28 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=25.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+.+.+|++. +..|+||||++..||.. .+.....+|.|
T Consensus 7 ~~g~~i~l~-G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 7 LGGNILLLS-GHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp CTTEEEEEE-ECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 445677777 67789999999888764 34445566655
No 274
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.10 E-value=0.62 Score=38.13 Aligned_cols=65 Identities=11% Similarity=-0.082 Sum_probs=44.6
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..+...+...++.+.... ...+.+|.|+.+-.
T Consensus 74 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 74 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp EEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred eEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 678999999832 222345677899999998865 456666666666665432 24578999999853
No 275
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.08 E-value=0.89 Score=36.55 Aligned_cols=66 Identities=14% Similarity=0.016 Sum_probs=47.0
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++.... ..+...+...++.+.... ...+.+|+|+.+-.
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 3788999999853 344566778899999998875 455666666666665532 24567899999863
No 276
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.01 E-value=0.56 Score=38.63 Aligned_cols=65 Identities=14% Similarity=-0.020 Sum_probs=44.5
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+... ......+..+|.++++.+.+ ..++..+...++.+.... ...+.+|.|+.+-.
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 75 VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp EEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 6789999998542 22334557799999998864 556666666666665532 23567889998853
No 277
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.00 E-value=0.4 Score=42.28 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=32.8
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
...+.++ +..|+|||++|..+|..+...+.++..+|+...
T Consensus 47 ~~~~ll~-G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 47 IGSFLFL-GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp SEEEEEE-SCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred ceEEEEE-CCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 3466666 667899999999999999887778999988754
No 278
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.95 E-value=0.81 Score=36.77 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=47.2
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++.+.+. .++..+...+..+... ....+.+|.|+.+-.
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 3778999999853 4445667788999999988754 4677777766666543 335678999999864
No 279
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.75 E-value=1.3 Score=34.58 Aligned_cols=66 Identities=14% Similarity=0.015 Sum_probs=42.6
Q ss_pred CCCEEEEcCCCCCCH---HHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDA---GFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~---~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~ 231 (340)
.+.+.++|+++.... .....+..+|.++++...+ ..++..+...+..+.... ...+.+|.|+.+-.
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 377889999985432 2333466799988888775 456666666666665432 24677999999854
No 280
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.73 E-value=0.32 Score=42.70 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=25.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+.+.+|+++ +..|+||||+|..|+. .|.. +||+|.
T Consensus 73 ~~~~iI~I~-G~~GSGKSTva~~La~----lg~~--~id~D~ 107 (281)
T 2f6r_A 73 SGLYVLGLT-GISGSGKSSVAQRLKN----LGAY--IIDSDH 107 (281)
T ss_dssp TTCEEEEEE-ECTTSCHHHHHHHHHH----HTCE--EEEHHH
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHH----CCCc--EEehhH
Confidence 445778887 6678999999999983 3654 477763
No 281
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.63 E-value=2 Score=33.82 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=44.3
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHH-Hhc--CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLL-ECD--GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l-~~~--~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+. .++..+...++.+ ... ....+.+|+|+.+-.
T Consensus 57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 678899999843 3345566778999998887754 4566666655555 222 224678999999854
No 282
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.61 E-value=0.82 Score=38.10 Aligned_cols=65 Identities=12% Similarity=0.003 Sum_probs=44.4
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.+++|...+ ..+...+...++.+.... ...+.+|.|+.+-.
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred EEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 678999999853 223345567899999998874 456677777777766542 23577889999753
No 283
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=89.59 E-value=0.58 Score=40.45 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=36.7
Q ss_pred CCCEEEEEEc-CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITS-GKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s-~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+|-|.|+| --.|.||-.+|++|+..|..+|++|-++.+||.
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPY 64 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY 64 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccc
Confidence 3456666665 567999999999999999999999999999985
No 284
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.56 E-value=0.53 Score=42.01 Aligned_cols=43 Identities=28% Similarity=0.254 Sum_probs=33.7
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-C-CcEEEEecCCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARL-G-FSVVAIDADVG 90 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g-~~VlliD~D~~ 90 (340)
.+.+.+|++. +..|+||||++..|+..+... | .++.++..|..
T Consensus 87 ~~~g~ivgI~-G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVA-GSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEE-CCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEE-CCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 3566788887 677899999999999988754 4 57888877753
No 285
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.55 E-value=0.38 Score=46.86 Aligned_cols=53 Identities=32% Similarity=0.300 Sum_probs=38.9
Q ss_pred CCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623 26 PFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID 86 (340)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 86 (340)
++....+.+..+..... .+.+.| .+..|+||||++..++..+.+.|.+|+++-
T Consensus 187 ~~~L~~~Q~~Av~~~~~-------~~~~~I-~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG-------HRLVVL-TGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp TTTCCHHHHHHHHHHTT-------CSEEEE-ECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCHHHHHHHHHHHh-------CCEEEE-EcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 44455666666665431 234444 488899999999999999999999999863
No 286
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.51 E-value=0.31 Score=39.93 Aligned_cols=35 Identities=34% Similarity=0.539 Sum_probs=25.6
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..+.+|+++ +..|+||||++..||.. |.. ++|.|.
T Consensus 6 ~~~~~I~i~-G~~GsGKST~~~~La~~----g~~--~id~d~ 40 (203)
T 1uf9_A 6 KHPIIIGIT-GNIGSGKSTVAALLRSW----GYP--VLDLDA 40 (203)
T ss_dssp CCCEEEEEE-ECTTSCHHHHHHHHHHT----TCC--EEEHHH
T ss_pred cCceEEEEE-CCCCCCHHHHHHHHHHC----CCE--EEcccH
Confidence 445678777 56789999999888774 544 577773
No 287
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.48 E-value=0.69 Score=36.98 Aligned_cols=65 Identities=12% Similarity=-0.085 Sum_probs=44.2
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc--CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD--GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+... ......+..+|.++++...+ ..+...+...++.+... ....+.+|.|+.+-.
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 6789999998542 22344556799999998865 45666666666666543 224678999999863
No 288
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.36 E-value=0.28 Score=39.81 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=23.4
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
++|++. +-.|+||||+|..||..+ |. ..+|.|
T Consensus 4 ~~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 4 LVVFVL-GGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 456665 778999999999988765 43 346665
No 289
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.34 E-value=0.36 Score=41.05 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=26.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHC----CCcEEEEe
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARL----GFSVVAID 86 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~----g~~VlliD 86 (340)
++.|+|. +-.|+||||.+..|+..|... |.+|.+..
T Consensus 25 g~~I~~e-G~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 25 GKFITFE-GIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCEEEEE-CCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 4556665 777899999999999999988 99987653
No 290
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.32 E-value=5.2 Score=36.24 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEe
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAID 86 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD 86 (340)
.+++|+ +..|+||||+...++..+... |.+++.++
T Consensus 124 g~i~I~-GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 124 GLVLVT-GPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp EEEEEE-CSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 467777 677899999999999888764 66666554
No 291
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.31 E-value=2 Score=34.07 Aligned_cols=65 Identities=11% Similarity=-0.021 Sum_probs=44.9
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..+...+....+.+... ....+.+|.|+.+..
T Consensus 52 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 52 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 667889999943 445566678899988888765 45566666666666542 224678999999864
No 292
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.23 E-value=0.27 Score=40.03 Aligned_cols=33 Identities=18% Similarity=0.461 Sum_probs=24.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+++|++. +-.|+||||++..||..+ |.. .+|.|
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~La~~l---~~~--~i~~d 41 (196)
T 2c95_A 9 TNIIFVV-GGPGSGKGTQCEKIVQKY---GYT--HLSTG 41 (196)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---CCe--EEcHH
Confidence 4567776 667899999999998866 433 56665
No 293
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.19 E-value=0.22 Score=39.54 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEE
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVV 83 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vl 83 (340)
+|++. +-.|+||||+|..| .+.|..++
T Consensus 3 ~I~l~-G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 3 VILIT-GMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp EEEEE-CCTTSCHHHHHHHH----HHTTCEEE
T ss_pred EEEEE-CCCCCCHHHHHHHH----HHCCCcEE
Confidence 45555 78899999999888 55677653
No 294
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.06 E-value=0.41 Score=40.25 Aligned_cols=35 Identities=37% Similarity=0.515 Sum_probs=28.3
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCC-cEEEE
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGF-SVVAI 85 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~-~Vlli 85 (340)
++.|+|- +-.|+||||.+..|+.+|...|+ .|.+.
T Consensus 3 g~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 3 SKYIVIE-GLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 4567766 56688999999999999999998 66543
No 295
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.83 E-value=0.7 Score=39.32 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=32.9
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
...++++..++ +.=|.||||.+..++..+..+|++|+++..-
T Consensus 15 ~~~~g~l~v~~-G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 15 SKTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp ---CCEEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred CCCceEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 34567776666 5557899999999999999999999999844
No 296
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=88.83 E-value=0.36 Score=45.71 Aligned_cols=66 Identities=21% Similarity=0.347 Sum_probs=43.3
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhH-------HHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSL-------RDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|||+... ..+...+..+|.+|+++..+...+ ....+.+..+...+.+.+.+++|+++..
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 46789999999643 233445577999999998876533 2455555666666777788999999863
No 297
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.77 E-value=0.35 Score=40.43 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=23.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+..|++. +-.|+||||++..||..+ |. ..+|.|
T Consensus 4 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 4 SIRMVLI-GPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 3456666 667999999999998876 33 346654
No 298
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.60 E-value=0.36 Score=38.98 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=23.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+.+|++. +-.|+||||++..||..+ |. ..+|.|
T Consensus 4 g~~I~l~-G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFL-GPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 3456666 778999999999998765 43 345654
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.59 E-value=0.24 Score=40.54 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=24.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+++|++. +..|+||||+|..||..+ | ...+|.|
T Consensus 12 ~~~I~l~-G~~GsGKsT~a~~L~~~l---~--~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFII-GGPGSGKGTQCEKLVEKY---G--FTHLSTG 44 (199)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 4567776 678899999999998876 3 3456665
No 300
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=88.58 E-value=0.33 Score=41.87 Aligned_cols=36 Identities=36% Similarity=0.516 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
|.|++.|+|+.+|.|+. +|..|++.|.+|++.|.+.
T Consensus 1 MnK~vlVTGas~GIG~a-----ia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQ-----ICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEecCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 45899999999999984 7889999999999999774
No 301
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.54 E-value=0.37 Score=40.29 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~ 89 (340)
+.+.++++. +..|+||||++..++..+.. .+.+++.++...
T Consensus 23 ~~G~~~~l~-G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 23 ETQAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp ESSEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 445777777 67789999999999987654 245688888764
No 302
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.54 E-value=0.21 Score=38.94 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=27.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
|.++ +..|+|||++|..++....+.+.+.. +++...
T Consensus 27 vll~-G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~ 62 (145)
T 3n70_A 27 VWLY-GAPGTGRMTGARYLHQFGRNAQGEFV-YRELTP 62 (145)
T ss_dssp EEEE-SSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCT
T ss_pred EEEE-CCCCCCHHHHHHHHHHhCCccCCCEE-EECCCC
Confidence 4455 77899999999999887766677777 777643
No 303
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=88.35 E-value=0.31 Score=45.26 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=44.8
Q ss_pred CCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhh-HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITS-LRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.... .....+..+|.+++++..+... ...+.+.+..+...+...+.+++|+++..
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 67899999995422 2233446689999999887432 44455555556656667788999999864
No 304
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.23 E-value=0.38 Score=43.19 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=27.0
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
|.++|.++ +-.|+||||+|..||..+ ...+||+|..
T Consensus 4 m~~~i~i~-GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLM-GPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 44566665 678999999999998754 3677888853
No 305
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.14 E-value=0.42 Score=39.95 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
.+|+++ +..|+||||++..|+..+
T Consensus 6 ~~i~i~-G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITID-GPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 578887 677899999999888754
No 306
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.13 E-value=0.44 Score=43.86 Aligned_cols=45 Identities=27% Similarity=0.242 Sum_probs=33.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhcc
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLL 98 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~ 98 (340)
++|+ +..|+||||++..++..+...|.++.++|-+.....+...+
T Consensus 38 ~~i~-G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 82 (392)
T 4ag6_A 38 WTIL-AKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKEMCRKL 82 (392)
T ss_dssp EEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSHHHHHHT
T ss_pred eEEE-cCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHHHHHHHc
Confidence 4455 67789999999999998888899999998765433333333
No 307
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.07 E-value=0.66 Score=40.78 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=28.7
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCC----cEEEEec
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGF----SVVAIDA 87 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~----~VlliD~ 87 (340)
+....+.++ +..|+|||++|..+|..+...+. ++..+++
T Consensus 65 ~~~~~vll~-G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 65 TPTLHMSFT-GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CCCCEEEEE-ECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred CCCceEEEE-CCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 334456666 67899999999999999987654 5555553
No 308
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=88.04 E-value=1.2 Score=38.63 Aligned_cols=89 Identities=15% Similarity=0.091 Sum_probs=55.7
Q ss_pred CCCEEEEcCCCCCCHH------------HHHH--HhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDAG------------FITA--ITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~~------------~~~~--l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+..... .... ...+|.++++++... ......+...+.+.+. .+.+|+|+.+..
T Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~-p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGI-PCIVALNMLDIA 125 (274)
T ss_dssp SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTC-CEEEEEECHHHH
T ss_pred CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCC-CEEEEEECccch
Confidence 3678999999943211 1222 257999999998754 4444555555655544 477999998853
Q ss_pred cccccccccHHHHHHHhCCceeEEecC
Q 047623 232 MIKGEDMMSVLDIQEMLGLALLGVIPE 258 (340)
Q Consensus 232 ~~~~~~~~~~~~i~~~~g~~v~~~Ip~ 258 (340)
... ........+.+.+|.+++.+-..
T Consensus 126 ~~~-~~~~~~~~l~~~lg~~~i~~SA~ 151 (274)
T 3i8s_A 126 EKQ-NIRIEIDALSARLGCPVIPLVST 151 (274)
T ss_dssp HHT-TEEECHHHHHHHHTSCEEECCCG
T ss_pred hhh-hHHHHHHHHHHhcCCCEEEEEcC
Confidence 211 11234677888899887754443
No 309
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=88.02 E-value=0.98 Score=33.06 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=27.6
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLG-FSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g-~~VlliD~D~ 89 (340)
.+++.|+|+|. |++|.. ++..|.+.| ++|.++|-++
T Consensus 3 ~~~~~v~I~G~-G~iG~~-----~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 3 AMRWNICVVGA-GKIGQM-----IAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TTCEEEEEECC-SHHHHH-----HHHHHHHCSSEEEEEEESCH
T ss_pred CCcCeEEEECC-CHHHHH-----HHHHHHhCCCceEEEEeCCH
Confidence 34578889988 888764 667778888 8999988764
No 310
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=87.86 E-value=0.19 Score=45.20 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=27.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
+.++ +..+..|+|||++|.++|.. .|.+|+++++
T Consensus 123 gsvi-LI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMV-IVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEE-EEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEE-EEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 3445 45699999999999999886 5778999988
No 311
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.81 E-value=2.8 Score=33.77 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=51.3
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCCcccccccc
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTDMIKGEDMM 239 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~~~~~~~~~ 239 (340)
.+.+.|+|+|+.. .......+..+|.++++.+.+ ..++..+...+..+... ....+.+|.|+.+-... .
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~-----~ 146 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA-----M 146 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-----C
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC-----C
Confidence 4788999999853 344556778899999998875 44677776666655432 23467899999986431 1
Q ss_pred cHHHHHHHhCC
Q 047623 240 SVLDIQEMLGL 250 (340)
Q Consensus 240 ~~~~i~~~~g~ 250 (340)
...++.+.++.
T Consensus 147 ~~~~i~~~~~~ 157 (192)
T 2b6h_A 147 PVSELTDKLGL 157 (192)
T ss_dssp CHHHHHHHTTG
T ss_pred CHHHHHHHhCc
Confidence 24455555553
No 312
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.80 E-value=0.24 Score=39.95 Aligned_cols=30 Identities=37% Similarity=0.373 Sum_probs=17.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEE
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVV 83 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vl 83 (340)
+++|.+. +-.|+||||+|..||..+ |..++
T Consensus 5 ~~~I~l~-G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 5 SPIIWIN-GPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CCEEEEE-CCC----CHHHHHHHHHS---TTCEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---CCCEE
Confidence 3466665 778999999999887654 55544
No 313
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.74 E-value=0.41 Score=43.48 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=32.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~ 90 (340)
+.+.++.+. +..|+||||++..++..++.. |-+|++||....
T Consensus 129 ~~G~i~~I~-G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 129 ETQAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp ESSEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 456778877 577899999999999887432 358899998653
No 314
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=87.74 E-value=0.38 Score=46.51 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=20.7
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHH
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGL 73 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~ 73 (340)
+..++|+|+ +-||+||||+|..++.
T Consensus 150 ~~~~vv~I~-G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 150 LDSFFLFLH-GRAGSGKSVIASQALS 174 (549)
T ss_dssp SSSEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CCceEEEEE-cCCCCCHHHHHHHHHH
Confidence 345788888 7799999999998885
No 315
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=87.73 E-value=0.54 Score=43.62 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=43.9
Q ss_pred CCEEEEcCCCCCCHHHHHH---HhcCCeEEEEeCCChhh-HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGIDAGFITA---ITPANEAVLVTTPDITS-LRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~~~~~~~---l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+... ..... +..+|.+++++..+... ...+.+.+..+...+...+.+++|+.+..
T Consensus 81 ~~i~iiDtPGh~~-f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 81 RRVSFVDSPGHET-LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp EEEEEEECSSHHH-HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred cEEEEEECCCHHH-HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 6789999999532 22222 34579999999886432 44445555556666666788999999864
No 316
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=87.66 E-value=1 Score=36.20 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=46.1
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-----CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-----GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++.+.+ ..++..+...+..+... ....+.+|.|+.+-.
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 3788999999844 333345667899999998875 44577766666555443 234678999999864
No 317
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.59 E-value=1.9 Score=33.96 Aligned_cols=66 Identities=11% Similarity=0.044 Sum_probs=40.6
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc------CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD------GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~------~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+... ......+..+|.++++...+ ..+...+...++.+... ....+.+|.|+.+-.
T Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp CEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 46789999998532 22334456799999998764 45666666666555432 224678999999863
No 318
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.50 E-value=0.52 Score=42.80 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 90 (340)
.+.++ +..|+||||++..++..+... +..++.+++...
T Consensus 46 ~~li~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 46 RATLL-GRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 66666 778999999999999988777 688888887654
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.27 E-value=0.45 Score=38.29 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=19.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
++.|.++ +-.|+||||++..||..+
T Consensus 11 ~~~i~i~-G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLT-GTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEE-CSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEE-eCCCCCHHHHHHHHHHHh
Confidence 3456655 778999999999998776
No 320
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.23 E-value=0.51 Score=42.58 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.++|.++ +-.|+||||++..||..+ ..-+||+|..
T Consensus 39 ~~~lIvI~-GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLM-GATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 34566666 667899999999998743 4678999964
No 321
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=87.21 E-value=0.99 Score=42.07 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=38.1
Q ss_pred hhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623 31 SSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI 85 (340)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 85 (340)
..+++.++.--.+. ...++|+|+|+ .||||++.-|+..|...|++|.++
T Consensus 23 ~~~~~~l~~lg~p~---~~~~vI~VtGT---nGKtTT~~~l~~iL~~~G~~vg~~ 71 (428)
T 1jbw_A 23 RRILTLLHALGNPQ---QQGRYIHVTGT---NGKGSAANAIAHVLEASGLTVGLY 71 (428)
T ss_dssp HHHHHHHHHTTCGG---GSSCEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCch---hcCcEEEEECC---CChHHHHHHHHHHHHHCCCCEEEE
Confidence 45666666544332 34579999975 589999999999999999999987
No 322
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.19 E-value=0.53 Score=39.81 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=23.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+..|.+. +..|+||||+|..||..+ | ...+|.|
T Consensus 16 ~~~I~l~-G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 16 GVRAVLL-GPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 3456666 667999999999999876 3 3455654
No 323
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.09 E-value=0.55 Score=41.99 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
++|+| ++-.|+||||+|..||..+ ..-+|.+|.
T Consensus 4 ~~i~i-~GptgsGKt~la~~La~~~-----~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAI-VGPTAVGKTKTSVMLAKRL-----NGEVISGDS 36 (322)
T ss_dssp EEEEE-ECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred cEEEE-ECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence 45554 5777899999999998754 456777774
No 324
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=87.07 E-value=4.2 Score=32.92 Aligned_cols=65 Identities=11% Similarity=-0.003 Sum_probs=44.1
Q ss_pred CCEEEEcCCCCCC--H-HHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623 167 PDFILIDCPAGID--A-GFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~-~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~ 231 (340)
+.+.|+|+++... . .....+..+|.++++...+ ..++..+...+..+.... ...+.+|.|+.+-.
T Consensus 72 ~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp EEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred EEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 6778999988643 2 3334567799999888774 556666766666665421 24577899999854
No 325
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.07 E-value=0.86 Score=40.61 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=25.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+.++|+| ++-.|+||||+|..||..+ ..-+|.+|.
T Consensus 8 ~~~~~i~i-~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFL-MGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp CCCEEEEE-ECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred CCCcEEEE-ECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 34455555 5777899999999998764 355777775
No 326
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.05 E-value=0.29 Score=40.31 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=24.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+.++ +..|+|||+++..++..+...+..+.++..+
T Consensus 41 ~ll~-G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 41 LLFS-GPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 5555 7789999999999999887655443333333
No 327
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.05 E-value=3.3 Score=31.94 Aligned_cols=66 Identities=8% Similarity=0.030 Sum_probs=45.7
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+... ......+..+|.++++.+.+ ..++......+..+... ....+.+|.|+.+-.
T Consensus 43 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114 (164)
T ss_dssp SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence 47889999998643 33344567899999998874 45677666666555432 234678999999864
No 328
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=87.02 E-value=0.73 Score=38.10 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=44.0
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc--CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD--GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..+.......++.+... ....+.+|.|+.+-.
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 678999999843 233345667899999998875 44555665565655543 124677999999854
No 329
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=86.85 E-value=0.81 Score=44.74 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=50.1
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~ 243 (340)
.|.+.|+|||+..+ ......+..+|.+++|++...............+...+. .+.+++|+.+..... .....++
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~i-piIvViNKiDl~~a~--~~~v~~e 146 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL-EVVPVLNKIDLPAAD--PERVAEE 146 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTC-EEEEEEECTTSTTCC--HHHHHHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CEEEeeeccCccccc--HHHHHHH
Confidence 37889999999753 334567788999999998754322222333333334455 477999999875311 1112345
Q ss_pred HHHHhCC
Q 047623 244 IQEMLGL 250 (340)
Q Consensus 244 i~~~~g~ 250 (340)
+.+.++.
T Consensus 147 i~~~lg~ 153 (599)
T 3cb4_D 147 IEDIVGI 153 (599)
T ss_dssp HHHHTCC
T ss_pred HHHHhCC
Confidence 5566554
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.81 E-value=0.5 Score=38.60 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLA 76 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la 76 (340)
.|++. +-.|+||||++..||..+.
T Consensus 2 ~I~i~-G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIF-GTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHHC
T ss_pred EEEEE-CCCccCHHHHHHHHHHhcC
Confidence 45555 6689999999999998764
No 331
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.79 E-value=0.51 Score=41.59 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=27.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
.++.+.++ +..|+|||++|..+|..+ |.++..+++
T Consensus 35 ~p~~lLl~-GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 35 VPLILGIW-GGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCSEEEEE-ECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 34556666 778999999999999887 778877775
No 332
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.67 E-value=0.4 Score=40.18 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=20.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLA 76 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la 76 (340)
++.|.+. +-.|+||||++..||..+.
T Consensus 5 ~~~I~l~-G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMIS-GAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEE-ESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 3456666 5678999999999998763
No 333
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=86.66 E-value=4.3 Score=31.84 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=43.1
Q ss_pred CCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-----CCCceEEEEecccC
Q 047623 167 PDFILIDCPAGIDAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-----GIRDIKMVVNRVRT 230 (340)
Q Consensus 167 ~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~~vviN~~~~ 230 (340)
+.+.|+|+++... ...+..+|.++++.+.+ ..++..+...++.+... ....+.+|.|+.+-
T Consensus 54 ~~l~i~Dt~G~~~---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (178)
T 2iwr_A 54 HLVLIREEAGAPD---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120 (178)
T ss_dssp EEEEEEECSSSCC---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred EEEEEEECCCCch---hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 6678999998665 34567799999998874 55677777755555432 12357788999875
No 334
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.66 E-value=0.44 Score=42.70 Aligned_cols=42 Identities=21% Similarity=0.128 Sum_probs=30.4
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-------CCcEEEEecCC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARL-------GFSVVAIDADV 89 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-------g~~VlliD~D~ 89 (340)
...+..+.++ +..|+|||+++..++..+.+. +..++.|++-.
T Consensus 42 ~~~~~~lli~-GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 42 SSQNKLFYIT-NADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp TTCCCEEEEE-CCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred CCCCCeEEEE-CCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 4555666555 899999999999999999763 23455565544
No 335
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=86.66 E-value=1.2 Score=35.91 Aligned_cols=66 Identities=8% Similarity=-0.069 Sum_probs=45.8
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++.+.+ ..++..+...+..+... ....+.+|.|+.+-.
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 4788999999853 223345567899999998875 45677776665555432 234678999999864
No 336
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.59 E-value=0.35 Score=40.46 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
..|.+. +-.|+||||++..||..+ |.. .+|.|
T Consensus 6 ~~I~l~-G~~GsGKsT~a~~La~~l---~~~--~i~~d 37 (217)
T 3be4_A 6 HNLILI-GAPGSGKGTQCEFIKKEY---GLA--HLSTG 37 (217)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---Cce--EEehh
Confidence 456666 567999999999999877 443 45554
No 337
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=86.59 E-value=0.42 Score=45.44 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=46.3
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+... ..+...+..+|.++++++.+........+.+..+...+.+. .+++|+.+..
T Consensus 72 ~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~ 138 (482)
T 1wb1_A 72 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNA 138 (482)
T ss_dssp TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSS
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcc
Confidence 47899999999532 22344567799999999886543445555566666667766 8999999864
No 338
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=86.58 E-value=0.77 Score=45.03 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=48.0
Q ss_pred CCCEEEEcCCCCCCHHH--HHHHhcCCeEEEEeCCChhhH-------HHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGIDAGF--ITAITPANEAVLVTTPDITSL-------RDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~~~~--~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.++|+|||+...... ...+..+|.+|+++..+.... ....+.+..+...+.+.+.+|+|+++..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 57899999999754322 234567999999999876432 3555666666666777788999999864
No 339
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.55 E-value=1.1 Score=36.94 Aligned_cols=48 Identities=17% Similarity=0.087 Sum_probs=32.9
Q ss_pred CCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 41 RKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 41 ~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+-|.....++++..++ +.-|+||||-....+.....+|++|+++....
T Consensus 11 ~~~~~~~~~g~l~fiy-G~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~ 58 (195)
T 1w4r_A 11 LVPRGSKTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 58 (195)
T ss_dssp --------CCEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred ccccCCCCceEEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEcccc
Confidence 3344456677877776 55579999999999988888999999997543
No 340
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=86.54 E-value=2.8 Score=34.97 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=46.6
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~ 231 (340)
.+.+-|.|+++.. .......+..+|.++++... +..++..+...++.+..... ..+.+|.|+.+-.
T Consensus 61 ~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 61 TIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp EEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred EEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 3677899999854 34455667789988888776 46678888777777764322 3567888998754
No 341
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=86.51 E-value=0.51 Score=40.30 Aligned_cols=36 Identities=36% Similarity=0.516 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
|+|++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 1 m~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 36 (247)
T 3dii_A 1 MNRGVIVTGGGHGIGKQ-----ICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 46899999999999974 7888899999999998654
No 342
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.43 E-value=0.7 Score=38.93 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=22.8
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
.+..++|.+. +-.|+||+|.|..||..+
T Consensus 26 ~~k~kiI~ll-GpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVL-GGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence 3566888888 678999999999998765
No 343
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.34 E-value=0.87 Score=37.85 Aligned_cols=32 Identities=41% Similarity=0.537 Sum_probs=23.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+.+|+++ +..|+||||++..|+. .|. -++|.|
T Consensus 4 ~~~I~i~-G~~GSGKST~~~~L~~----lg~--~~id~D 35 (218)
T 1vht_A 4 RYIVALT-GGIGSGKSTVANAFAD----LGI--NVIDAD 35 (218)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHH----TTC--EEEEHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEcc
Confidence 3567776 6788999999988875 454 457776
No 344
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=86.33 E-value=0.74 Score=36.81 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=46.1
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++.+.+. .++..+...+..+... ....+.+|.|+.+-.
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 64 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 3788999999853 3334456678999999988754 4677776666555432 334678999999864
No 345
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.22 E-value=0.49 Score=43.85 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~ 90 (340)
.+.++.|. +..|+||||++.+++..... .+.+|++||....
T Consensus 177 ~Gei~~I~-G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 177 TGSITELF-GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp TTSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CCcEEEEE-cCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 34566666 77899999999999876553 3578999998753
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.20 E-value=0.58 Score=37.01 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.|+++ +-.|+||||++..|+..+ |.. ++|.|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~l---~~~--~i~~d 32 (168)
T 2pt5_A 2 RIYLI-GFMCSGKSTVGSLLSRSL---NIP--FYDVD 32 (168)
T ss_dssp EEEEE-SCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEECc
Confidence 45555 678999999999998866 444 45666
No 347
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=86.14 E-value=2.1 Score=36.97 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=53.4
Q ss_pred CCCEEEEcCCCCCC--H------HHHHHH--hcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccc
Q 047623 166 SPDFILIDCPAGID--A------GFITAI--TPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKG 235 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~------~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~ 235 (340)
++.+.|+|+|+... . .....+ ..+|.++++++.... .........+...+...+.+++|+.+-.....
T Consensus 49 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~ 126 (271)
T 3k53_A 49 EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKG 126 (271)
T ss_dssp TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHT
T ss_pred CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccc
Confidence 35689999998432 1 222233 469999999876543 33344444444455356779999998422111
Q ss_pred cccccHHHHHHHhCCceeEE
Q 047623 236 EDMMSVLDIQEMLGLALLGV 255 (340)
Q Consensus 236 ~~~~~~~~i~~~~g~~v~~~ 255 (340)
.......+.+.+|.+++.+
T Consensus 127 -~~~~~~~l~~~lg~~~~~~ 145 (271)
T 3k53_A 127 -AKIDIKKMRKELGVPVIPT 145 (271)
T ss_dssp -CCCCHHHHHHHHSSCEEEC
T ss_pred -cHHHHHHHHHHcCCcEEEE
Confidence 1123678888999887743
No 348
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=86.01 E-value=1.1 Score=41.54 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI 85 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 85 (340)
...++|+|+|+ -||||++.-++..|.+.|++|.++
T Consensus 47 ~~~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~~g~~ 81 (422)
T 1w78_A 47 PAPFVFTVAGT---NGKGTTCRTLESILMAAGYKVGVY 81 (422)
T ss_dssp CSSEEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEeCC---cChHHHHHHHHHHHHHCCCCEEEE
Confidence 45689999975 589999999999999999999876
No 349
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=86.01 E-value=0.93 Score=43.94 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=29.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHH---HH-CCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSL---AR-LGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l---a~-~g~~VlliD~D~~ 90 (340)
...++|+|+ +-||+||||+|..++... .. ....|..++++..
T Consensus 145 ~~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 145 GEPGWVTIH-GMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp TSCEEEEEE-CCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCceEEEE-cCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 345677776 789999999999988643 22 2235777777643
No 350
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.00 E-value=0.41 Score=39.10 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=25.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
|.|+ +..|+|||++|..||.. |.++++++....
T Consensus 2 ilV~-Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVT-GGARSGKSRHAEALIGD----APQVLYIATSQI 34 (180)
T ss_dssp EEEE-ECTTSSHHHHHHHHHCS----CSSEEEEECCCC
T ss_pred EEEE-CCCCCcHHHHHHHHHhc----CCCeEEEecCCC
Confidence 4556 56789999999998854 778999988653
No 351
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=85.82 E-value=0.4 Score=40.33 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=23.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
++.|++. +-.|+||||++..||..+ |. ..+|.|
T Consensus 7 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIM-GAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 3566666 668899999999988754 43 345554
No 352
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.65 E-value=0.68 Score=43.42 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=30.8
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARL--GFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D 88 (340)
...+.++ +..|+||||++..+|..+... +.+++.+++.
T Consensus 130 ~~~lll~-Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIY-GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEE-CSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4455565 778999999999999998765 8889888765
No 353
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=85.59 E-value=1.8 Score=40.39 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=31.9
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI 85 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 85 (340)
....++|.|+|+ .||||++.-|+..|.+.|++|.++
T Consensus 49 ~~~~~vI~VtGT---NGKgSt~~~l~~iL~~~G~~vg~~ 84 (437)
T 3nrs_A 49 KPAPKIFTVAGT---NGKGTTCCTLEAILLAAGLRVGVY 84 (437)
T ss_dssp CSSSEEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cccCCEEEEECC---cChHHHHHHHHHHHHHCCCcEEEE
Confidence 456789999975 689999999999999999999886
No 354
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=85.48 E-value=0.57 Score=37.99 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=18.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHH
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGL 73 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~ 73 (340)
+.++++. +..|+||||++..|+.
T Consensus 2 g~ii~l~-G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIIT-GPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCcHHHHHHHHhc
Confidence 3556665 7789999999999975
No 355
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=85.47 E-value=0.63 Score=38.13 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=20.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
.+.+|+++ +..|+||||++..|+..+
T Consensus 5 ~g~~i~l~-G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLS-GPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEE-CSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHhh
Confidence 45677777 667899999998887765
No 356
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.46 E-value=0.8 Score=43.97 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..+.++++. +..|+||||++..++..++..|.+++.+....
T Consensus 279 ~~G~i~~i~-G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 279 FKDSIILAT-GATGTGKTLLVSRFVENACANKERAILFAYEE 319 (525)
T ss_dssp ESSCEEEEE-ECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCCcEEEEE-eCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 445677777 67889999999999999888888898887754
No 357
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.38 E-value=7.4 Score=36.28 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=25.8
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.+-|.++ +..|+|||++|..+|..+ .+..+..+++.
T Consensus 167 ~~~vLL~-GppGtGKT~lA~aia~~~--~~~~~~~v~~~ 202 (444)
T 2zan_A 167 WRGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISSS 202 (444)
T ss_dssp CSEEEEE-CSTTSSHHHHHHHHHHHC--CSSEEEEECCC
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHc--CCCCEEEEeHH
Confidence 3566666 778999999999998875 25566555543
No 358
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.25 E-value=0.55 Score=40.45 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
-+.++ +..|+|||++|..++..+.+.+.++..+++...
T Consensus 31 ~vll~-G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 31 PVLII-GERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp CEEEE-CCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CEEEE-CCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 34455 788999999999999887777778888887643
No 359
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.07 E-value=0.57 Score=45.35 Aligned_cols=41 Identities=29% Similarity=0.451 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~ 89 (340)
..+.+|.++ +..|+||||++..||..+... |.++.++|.|.
T Consensus 367 ~~G~iI~Li-G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 367 RQGFTVFFT-GLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp GSCEEEEEE-ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ccceEEEEE-CCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 345677777 567899999999999999865 45677777763
No 360
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.01 E-value=0.78 Score=42.03 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=27.9
Q ss_pred cCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623 57 SGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG 90 (340)
Q Consensus 57 s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~ 90 (340)
.+.+|+|||+++..++..+... +..++.+++...
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 5889999999999999988763 677888887543
No 361
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=85.00 E-value=1.7 Score=35.06 Aligned_cols=67 Identities=10% Similarity=0.050 Sum_probs=45.7
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc----------CCCceEEEEecccCCc
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD----------GIRDIKMVVNRVRTDM 232 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~----------~~~~~~vviN~~~~~~ 232 (340)
.+.+.|+|+|+.. .......+..+|.++++.+.+ ..++..+...+..+... ....+.+|.|+.+-..
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 4788999999854 223344567899999999876 44577776665555432 1345779999998643
No 362
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=84.89 E-value=1 Score=44.51 Aligned_cols=35 Identities=31% Similarity=0.482 Sum_probs=29.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
+++.-+-.|+|||++.+++...+.+.|.+||+.-.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 55666779999999999999999999999998643
No 363
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=84.87 E-value=0.9 Score=38.75 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=20.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
.+.+|.++ +-.|+||||+|..|+..+
T Consensus 28 ~~~~I~l~-G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFL-GAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 34566665 778899999999998765
No 364
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=84.77 E-value=3.3 Score=35.81 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
-.+|++.|+|+.||.|+ .+|..|+++|.+|.++|-+..
T Consensus 13 l~gk~~lVTGas~gIG~-----a~a~~la~~G~~V~~~~r~~~ 50 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGR-----SHAVRLAAEGADIIACDICAP 50 (280)
T ss_dssp TTTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCSC
T ss_pred cCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEecccc
Confidence 34589999999999887 478889999999999987643
No 365
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.74 E-value=1.6 Score=37.83 Aligned_cols=40 Identities=23% Similarity=0.423 Sum_probs=29.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDAD 88 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D 88 (340)
+.+.+++++ +..|+||||+...|+..+... .-++.+.+-+
T Consensus 23 ~~g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 23 RKMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp CSSEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 455788888 566899999999999888753 4467665543
No 366
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=84.55 E-value=1.1 Score=42.44 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.+.++-+-.|+||||++..||..+...+.++..++.|
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 3344447789999999999999998878788777654
No 367
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=84.42 E-value=0.62 Score=39.16 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=28.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
||++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 1 Mk~vlVTGas~gIG~~-----~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITGASSGLGAE-----LAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp --CEEEESTTSHHHHH-----HHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEecCCchHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 4789999999998874 7778889999999998764
No 368
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=84.38 E-value=0.69 Score=40.62 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
++|.+. +-.|+||||+|..|+..+ . ....+|.|
T Consensus 3 ~~I~l~-G~~GsGKST~a~~L~~~~--~--~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTI-GCPGSGKSTWAREFIAKN--P--GFYNINRD 35 (301)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHS--T--TEEEECHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhC--C--CcEEeccc
Confidence 455554 778999999999888732 2 34566665
No 369
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=84.31 E-value=0.75 Score=39.85 Aligned_cols=40 Identities=33% Similarity=0.466 Sum_probs=33.2
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.....|++.|+|+.||.|+ .+|..|+++|.+|.++|.+..
T Consensus 10 ~~~~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~ 49 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGL-----AVVDALVRYGAKVVSVSLDEK 49 (269)
T ss_dssp CTTTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCC-
T ss_pred cCCCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCch
Confidence 3456789999999999997 478889999999999987764
No 370
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=84.04 E-value=0.92 Score=38.89 Aligned_cols=37 Identities=32% Similarity=0.627 Sum_probs=32.9
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|++.|+|+.+|.|+. +|..|++.|.+|.+.|.|..
T Consensus 10 ~GK~alVTGas~GIG~a-----ia~~la~~Ga~Vv~~~~~~~ 46 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGAA-----IAMQFAELGAEVVALGLDAD 46 (242)
T ss_dssp TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSTT
T ss_pred CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCCHH
Confidence 47999999999999985 78899999999999998754
No 371
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=84.02 E-value=1 Score=40.91 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=50.5
Q ss_pred CCCEEEEcCCCCCC---------------HHHHHHHhcCCeEEEEeCCChh--hHHHHHHHHHHHHhcCCCceEEEEecc
Q 047623 166 SPDFILIDCPAGID---------------AGFITAITPANEAVLVTTPDIT--SLRDADRVTGLLECDGIRDIKMVVNRV 228 (340)
Q Consensus 166 ~~D~VIiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~~--s~~~~~~~~~~l~~~~~~~~~vviN~~ 228 (340)
..++.|+|+|+... ......+..+|.+++++.+... .......+++.+...+ ..+.+|+|++
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~-~~~i~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSG-DRTFGVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTC-TTEEEEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccC-CCEEEEEeCC
Confidence 46899999998432 2334566789988887765321 2233344444444333 3577899999
Q ss_pred cCCcccccccccHHHHHHHhCCceeEEecCCh
Q 047623 229 RTDMIKGEDMMSVLDIQEMLGLALLGVIPEDS 260 (340)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~ 260 (340)
+.-..........+.....++.++..+...+.
T Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~ 245 (360)
T 3t34_A 214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQ 245 (360)
T ss_dssp GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCH
T ss_pred ccCCCcccHHHHHcCccccccCCeEEEEECCh
Confidence 85432111110011111224556666666553
No 372
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=84.01 E-value=0.56 Score=38.73 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=19.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
+++|.+. +-.|+||||++..|+..+
T Consensus 12 ~~~i~l~-G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVC-GPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEE-CCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 3566666 667899999999998865
No 373
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.91 E-value=1.7 Score=37.01 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=27.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..+-+.++ +..|+|||++|..+|..+ +.++..+++..
T Consensus 38 ~~~~vll~-G~~GtGKT~la~~la~~~---~~~~~~~~~~~ 74 (262)
T 2qz4_A 38 VPKGALLL-GPPGCGKTLLAKAVATEA---QVPFLAMAGAE 74 (262)
T ss_dssp CCCEEEEE-SCTTSSHHHHHHHHHHHH---TCCEEEEETTT
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEechHH
Confidence 34456666 677999999999998865 56777777653
No 374
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=83.79 E-value=2.6 Score=34.02 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=43.9
Q ss_pred CCCEEEEcCCCCCC--HHH---HHHHhcCCeEEEEeCCChh---hHHHHHHHHHHHHh-cCCCceEEEEecccC
Q 047623 166 SPDFILIDCPAGID--AGF---ITAITPANEAVLVTTPDIT---SLRDADRVTGLLEC-DGIRDIKMVVNRVRT 230 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~---~~~l~~ad~viiv~~~~~~---s~~~~~~~~~~l~~-~~~~~~~vviN~~~~ 230 (340)
.+.+.|+|+++... ... ...+..+|.++++.+.... ++..+...++.+.. .....+.+|.|+.+-
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl 141 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG 141 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred eeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc
Confidence 48899999999543 233 5677889999999988764 44444444444422 223467788999984
No 375
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=83.75 E-value=0.88 Score=39.35 Aligned_cols=37 Identities=22% Similarity=0.466 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
-++|++.|+|+.||.|+ .+|..|+++|.+|.++|-+.
T Consensus 14 ~~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 50 (266)
T 3p19_A 14 SMKKLVVITGASSGIGE-----AIARRFSEEGHPLLLLARRV 50 (266)
T ss_dssp -CCCEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 34689999999999998 47888999999999998653
No 376
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=83.75 E-value=0.83 Score=38.66 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=30.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+|++.|+|+.||.|+ .+|..|+++|.+|.++|-+.
T Consensus 3 ~k~vlVTGas~GIG~-----a~a~~l~~~G~~V~~~~r~~ 37 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGR-----ALTIGLVERGHQVSMMGRRY 37 (235)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 478999999999998 47888899999999998764
No 377
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=83.68 E-value=0.96 Score=37.60 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=21.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
.++++|+|+ +|.|+||+|+|--+...+
T Consensus 9 ~~~~II~it-Gk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFS-GKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEE-CCCCCChHHHHHHHHHHc
Confidence 456788887 889999999997776544
No 378
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.68 E-value=3.9 Score=37.78 Aligned_cols=142 Identities=13% Similarity=0.162 Sum_probs=72.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS 129 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (340)
++-|.++ +-.|+|||++|..+|..+ |.+.+.+++.. -.+.+.|... ..+-+++.........+.. ++
T Consensus 182 prGvLL~-GPPGTGKTllAkAiA~e~---~~~f~~v~~s~---l~sk~vGese---~~vr~lF~~Ar~~aP~IIF---iD 248 (405)
T 4b4t_J 182 PKGVILY-GPPGTGKTLLARAVAHHT---DCKFIRVSGAE---LVQKYIGEGS---RMVRELFVMAREHAPSIIF---MD 248 (405)
T ss_dssp CCCEEEE-SCSSSSHHHHHHHHHHHH---TCEEEEEEGGG---GSCSSTTHHH---HHHHHHHHHHHHTCSEEEE---EE
T ss_pred CCceEEe-CCCCCCHHHHHHHHHHhh---CCCceEEEhHH---hhccccchHH---HHHHHHHHHHHHhCCceEe---ee
Confidence 3456666 778999999998887753 56776666542 1223333211 2222333211111111111 13
Q ss_pred ceeEeecCCCCCCCCCCcchhh----HHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHh--cCCeEEEEeCCChhhH
Q 047623 130 NFELLCISKPRSKLPLGFGGKA----LTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAIT--PANEAVLVTTPDITSL 203 (340)
Q Consensus 130 ~l~~l~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~--~ad~viiv~~~~~~s~ 203 (340)
.+|-+......... ..... +..++..+.. ....-+++||=+.+..+....+.+. .-|..|-+-.|+....
T Consensus 249 EiDai~~~R~~~~~---~~~~~~~~~l~~lL~~lDg-~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R 324 (405)
T 4b4t_J 249 EIDSIGSTRVEGSG---GGDSEVQRTMLELLNQLDG-FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAAR 324 (405)
T ss_dssp SSSCCTTSCSCSSS---GGGGHHHHHHHHHHHHHHT-TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred cchhhccCCCCCCC---CCcHHHHHHHHHHHHhhhc-cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHH
Confidence 34433222211111 11112 2334444432 2344567788777776666666675 6888888888887776
Q ss_pred HHHHH
Q 047623 204 RDADR 208 (340)
Q Consensus 204 ~~~~~ 208 (340)
....+
T Consensus 325 ~~Il~ 329 (405)
T 4b4t_J 325 AEILR 329 (405)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 379
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=83.65 E-value=1.7 Score=35.81 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=40.9
Q ss_pred CCCEEEEcCCCCCC------------HHHHHHHhc---CCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623 166 SPDFILIDCPAGID------------AGFITAITP---ANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230 (340)
Q Consensus 166 ~~D~VIiD~~~~~~------------~~~~~~l~~---ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~ 230 (340)
.+.+.|+|+|+... ......+.. +|.++++++....--.....+++.+...+. .+.+|+|+.+.
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~Dl 156 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGK-PIHSLLTKCDK 156 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCC-CEEEEEECGGG
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCC-CEEEEEecccc
Confidence 47899999998422 122233433 677888888764322334455666665443 57799999986
Q ss_pred C
Q 047623 231 D 231 (340)
Q Consensus 231 ~ 231 (340)
.
T Consensus 157 ~ 157 (223)
T 4dhe_A 157 L 157 (223)
T ss_dssp S
T ss_pred C
Confidence 4
No 380
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=83.50 E-value=5.1 Score=35.49 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=25.3
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
.+-+.++ +..|+|||++|..+|..+ +.++..+++
T Consensus 51 ~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CCEEEEE-CSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 4556666 678999999999888764 567776665
No 381
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=83.48 E-value=0.92 Score=38.36 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+|++.|+|+.||.|+. +|..|+++|.+|.+++-+..
T Consensus 2 ~k~vlVTGas~giG~~-----~a~~l~~~G~~V~~~~r~~~ 37 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRA-----IAEALVARGYRVAIASRNPE 37 (239)
T ss_dssp CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSCH
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCCHH
Confidence 5789999999999984 77888899999999987754
No 382
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.42 E-value=2.6 Score=37.40 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=26.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+++.|+ +..|+|||+++..++..+. .+++.+++..
T Consensus 31 ~~v~i~-G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVL-GLRRTGKSSIIKIGINELN---LPYIYLDLRK 65 (357)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence 355555 7789999999999887653 4578888764
No 383
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=83.40 E-value=0.93 Score=38.61 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=30.3
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
||++.|+|+.||.|+. +|..|+++|.+|.+++-+..
T Consensus 1 mk~vlVTGas~gIG~~-----~a~~l~~~G~~V~~~~r~~~ 36 (257)
T 1fjh_A 1 MSIIVISGCATGIGAA-----TRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCCch
Confidence 4689999999999885 77788889999999987754
No 384
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.37 E-value=1.4 Score=38.51 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+.+.++ +..|+|||++|..+|..+ +.++..+++...
T Consensus 51 ~~vll~-G~~GtGKT~la~~la~~l---~~~~~~i~~~~~ 86 (310)
T 1ofh_A 51 KNILMI-GPTGVGKTEIARRLAKLA---NAPFIKVEATKF 86 (310)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEcchhc
Confidence 445555 778999999999999877 667888887643
No 385
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=83.34 E-value=0.97 Score=38.45 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
+.+|++. +..|+||||++..||..+
T Consensus 27 ~~~i~l~-G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVIL-GPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 4577777 778899999999998776
No 386
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=83.31 E-value=0.82 Score=39.24 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=21.0
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
..+.+|++. +..|+||||++..||..|
T Consensus 25 ~~g~~I~I~-G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVD-GPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEE-CCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 345688888 567899999998888654
No 387
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=83.26 E-value=3.2 Score=32.49 Aligned_cols=65 Identities=8% Similarity=-0.039 Sum_probs=42.3
Q ss_pred CCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc------CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGIDA--GFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD------GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~------~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.... .....+..+|.++++...+ ..+...+...++.+... ....+.+|.|+.+..
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 56 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 67899999985432 2233456799988887764 44555555555555431 223678999999864
No 388
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=83.17 E-value=1.8 Score=40.59 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=37.4
Q ss_pred hhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623 31 SSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI 85 (340)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 85 (340)
..+++.++.--.+. +..++|.|+|+ -||||++.-|+..|.+.|++|.++
T Consensus 36 ~~~~~~l~~lg~p~---~~~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~vg~~ 84 (442)
T 1o5z_A 36 ERISMLLSKLGNPH---LEYKTIHIGGT---NGKGSVANMVSNILVSQGYRVGSY 84 (442)
T ss_dssp HHHHHHHHHTTCGG---GSSEEEEEECS---SSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCch---hcCCEEEEECC---cCHHHHHHHHHHHHHHCCCCEEEE
Confidence 44555555543332 34589999975 689999999999999999999986
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.12 E-value=1.6 Score=39.93 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEec
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDA 87 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~ 87 (340)
+.+.+++|+ +..|+||||+...|+..+... ..++..++-
T Consensus 134 ~~g~~i~iv-G~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 134 RKMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SSSEEEEEE-CSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred cCCCEEEEE-CCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 456778888 566899999999999988864 457777763
No 390
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=83.11 E-value=1.2 Score=43.18 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=43.1
Q ss_pred CEEEEcCCCCCC-------------HHHHHHHhcCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 168 DFILIDCPAGID-------------AGFITAITPANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 168 D~VIiD~~~~~~-------------~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.++|||||+... ......+..+|.+++++++... .......+++.+...+ ..+.+|+|+++.-
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHE-DKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCG-GGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcC-CCEEEEEECCCcc
Confidence 569999998543 2234456789999999988653 3344455666665433 3588999999864
No 391
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=83.06 E-value=3.5 Score=37.25 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=26.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.+-|.++ +..|+|||++|..+|..+ +.++..+++.
T Consensus 84 ~~~iLL~-GppGtGKT~la~ala~~~---~~~~~~v~~~ 118 (355)
T 2qp9_X 84 TSGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSSS 118 (355)
T ss_dssp CCCEEEE-CSTTSCHHHHHHHHHHHH---TCEEEEEEHH
T ss_pred CceEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEeeHH
Confidence 3446666 778999999999998876 5677666553
No 392
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=83.04 E-value=0.79 Score=39.44 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=31.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+|++.|+|+.+|.|+. +|..|++.|.+|.+.|-+.
T Consensus 8 ~GKvalVTGas~GIG~a-----iA~~la~~Ga~Vvi~~r~~ 43 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQA-----IAVGLAAAGAEVVCAARRA 43 (247)
T ss_dssp TTCEEEETTTTSHHHHH-----HHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEeCcCCHHHHH-----HHHHHHHcCCEEEEEeCCc
Confidence 46899999999999985 7889999999999998764
No 393
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=82.97 E-value=1.1 Score=36.49 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=43.4
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc------CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD------GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~------~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++.+.+ ..+...+...++.+... ....+.+|+|+.+-.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 3678999999843 222334567799999998774 45566665555555432 123578999999864
No 394
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=82.88 E-value=1.1 Score=36.66 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.2
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
+.+|+++ +..|+||||++..|+..+
T Consensus 7 g~ii~l~-Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIIS-APSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 4678877 667899999999988764
No 395
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=82.74 E-value=0.84 Score=37.89 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=21.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
|++. +..|+||||++..||..+ |..+ +|.|
T Consensus 3 I~l~-G~~GsGKsT~a~~L~~~~---g~~~--i~~d 32 (214)
T 1e4v_A 3 IILL-GAPVAGKGTQAQFIMEKY---GIPQ--ISTG 32 (214)
T ss_dssp EEEE-ESTTSSHHHHHHHHHHHH---CCCE--EEHH
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh---CCeE--EeHH
Confidence 4555 667999999999999876 5544 5553
No 396
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=82.69 E-value=6 Score=34.26 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=54.2
Q ss_pred CCEEEEcCCCCCC--------HHHHHHHh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCccccc
Q 047623 167 PDFILIDCPAGID--------AGFITAIT--PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGE 236 (340)
Q Consensus 167 ~D~VIiD~~~~~~--------~~~~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~ 236 (340)
+++.|+|+|+... ......+. .+|.++++++... ......+...+.+.+. .+.+++|+.+......
T Consensus 49 ~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~-p~ilv~NK~Dl~~~~~- 124 (272)
T 3b1v_A 49 KDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN--LERNLYLTTQLIETGI-PVTIALNMIDVLDGQG- 124 (272)
T ss_dssp TTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHHTCS-CEEEEEECHHHHHHTT-
T ss_pred CeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc--hHhHHHHHHHHHhcCC-CEEEEEEChhhCCcCC-
Confidence 6789999998542 22333443 5999999987643 3444445455554443 4678999987532111
Q ss_pred ccccHHHHHHHhCCceeEEecC
Q 047623 237 DMMSVLDIQEMLGLALLGVIPE 258 (340)
Q Consensus 237 ~~~~~~~i~~~~g~~v~~~Ip~ 258 (340)
.......+.+.+|.+++.+--.
T Consensus 125 ~~~~~~~l~~~lg~~vi~~SA~ 146 (272)
T 3b1v_A 125 KKINVDKLSYHLGVPVVATSAL 146 (272)
T ss_dssp CCCCHHHHHHHHTSCEEECBTT
T ss_pred cHHHHHHHHHHcCCCEEEEEcc
Confidence 1134677888889887755443
No 397
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=82.63 E-value=1 Score=37.24 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=20.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
+.+++|+++ +-.|+||||++..|+..+
T Consensus 6 ~~g~~i~l~-GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLS-GPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEE-CCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 345677766 777899999998887654
No 398
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=82.41 E-value=2.2 Score=36.68 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=54.6
Q ss_pred CCCEEEEcCCCCCC--H------HHHHHH--hcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccc
Q 047623 166 SPDFILIDCPAGID--A------GFITAI--TPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKG 235 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~------~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~ 235 (340)
.+.+.|+|+|+... . .....+ ..+|.++++++.+.. .....+...+.+.+ ..+.+++|+.+......
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~-~pvilv~NK~Dl~~~~~ 127 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEME-KKVILAMTAIDEAKKTG 127 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTT-CCEEEEEECHHHHHHTT
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcC-CCEEEEEECcCCCCccc
Confidence 47889999999532 1 223333 479999999887643 22333444555444 35779999988532111
Q ss_pred cccccHHHHHHHhCCceeEEec
Q 047623 236 EDMMSVLDIQEMLGLALLGVIP 257 (340)
Q Consensus 236 ~~~~~~~~i~~~~g~~v~~~Ip 257 (340)
.......+.+.+|.+++.+-.
T Consensus 128 -i~~~~~~l~~~lg~~vi~~SA 148 (258)
T 3a1s_A 128 -MKIDRYELQKHLGIPVVFTSS 148 (258)
T ss_dssp -CCBCHHHHHHHHCSCEEECCT
T ss_pred -hHHHHHHHHHHcCCCEEEEEe
Confidence 113467888899988775443
No 399
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=82.39 E-value=1.1 Score=37.69 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=29.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+|++.|+|+.||.|+ .+|..|+++|.+|.+++-+.
T Consensus 2 ~k~vlITGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (235)
T 3l77_A 2 MKVAVITGASRGIGE-----AIARALARDGYALALGARSV 36 (235)
T ss_dssp CCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 578999999999887 47888889999999988664
No 400
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=82.33 E-value=1.3 Score=43.37 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=25.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH----CCCcEEEE
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLAR----LGFSVVAI 85 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~----~g~~Vlli 85 (340)
+.+..+..|+||||++..+...+.+ .|.+|+++
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 4455588999999999999988874 36677765
No 401
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=82.30 E-value=1.4 Score=41.96 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=36.1
Q ss_pred hhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623 31 SSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI 85 (340)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 85 (340)
..++..++.--.+ ....++|.|+|+ -||||++.-|+..|.+.|++|.++
T Consensus 48 ~r~~~ll~~lg~p---~~~~~vI~VtGT---NGKtST~~~l~~iL~~~G~~vG~~ 96 (487)
T 2vos_A 48 TRISALMDLLGSP---QRSYPSIHIAGT---NGKTSVARMVDALVTALHRRTGRT 96 (487)
T ss_dssp HHHHHHHHHTTCG---GGSSCEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCc---hhcCeEEEEeCC---CCcHHHHHHHHHHHHHcCCCeEEE
Confidence 3445555443222 234579999976 489999999999999999999776
No 402
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=82.29 E-value=1.1 Score=37.08 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=17.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH
Q 047623 53 VVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~l 75 (340)
|.++ +-.|+||||+|..||..+
T Consensus 3 I~l~-G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLM-GLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHH
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh
Confidence 4454 788999999999998765
No 403
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=82.27 E-value=2 Score=33.88 Aligned_cols=65 Identities=12% Similarity=-0.037 Sum_probs=42.4
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHH-HHHHHHHhc-CCCceEEEEecccC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDAD-RVTGLLECD-GIRDIKMVVNRVRT 230 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~-~~~~~l~~~-~~~~~~vviN~~~~ 230 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..++..+. .+++.+... ....+.+|.|+.+-
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 3667899999853 333344567799999998874 55666665 466666653 23457799999875
No 404
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=82.23 E-value=1.1 Score=38.39 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=31.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|++.|+|+.||.|+ .+|..|+++|.+|.++|-+..
T Consensus 6 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~ 42 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGA-----EIAKKFAAEGFTVFAGRRNGE 42 (252)
T ss_dssp CSCEEEEECCSSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred CCCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 4589999999999987 478888999999999987643
No 405
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=82.22 E-value=1.1 Score=37.95 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
++|++.|+|+.||.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 ~~k~vlItGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 36 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGL-----AIATRFLARGDRVAALDLSA 36 (250)
T ss_dssp CCCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3578999999999887 47778888999999998653
No 406
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=82.16 E-value=1.2 Score=38.12 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=31.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|++.|+|+.||.|+. +|..|++.|.+|.++|-+..
T Consensus 6 ~~k~~lVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAA-----VTRMLAQEGATVLGLDLKPP 42 (257)
T ss_dssp TTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESSCC
T ss_pred CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCChH
Confidence 35899999999999974 78888999999999987754
No 407
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.13 E-value=3.8 Score=38.15 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=68.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
+..+-|.++ +-.|+|||++|..+|..+ |.+...+++.. -.+.+.|... ..+.+++.........+..
T Consensus 204 ~~prGiLL~-GPPGtGKT~lakAiA~~~---~~~~~~v~~~~---l~~~~~Ge~e---~~ir~lF~~A~~~aP~Iif--- 270 (428)
T 4b4t_K 204 DPPRGVLLY-GPPGTGKTMLVKAVANST---KAAFIRVNGSE---FVHKYLGEGP---RMVRDVFRLARENAPSIIF--- 270 (428)
T ss_dssp CCCCEEEEE-SCTTTTHHHHHHHHHHHH---TCEEEEEEGGG---TCCSSCSHHH---HHHHHHHHHHHHTCSEEEE---
T ss_pred CCCceEEEE-CCCCCCHHHHHHHHHHHh---CCCeEEEecch---hhccccchhH---HHHHHHHHHHHHcCCCeee---
Confidence 344566666 778999999999988765 66777776542 2233333221 1222332211111111111
Q ss_pred cCceeEeecCCCCCCCCCCc-chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHh--cCCeEEEE-eCCChhhH
Q 047623 128 WSNFELLCISKPRSKLPLGF-GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAIT--PANEAVLV-TTPDITSL 203 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~--~ad~viiv-~~~~~~s~ 203 (340)
++.++-+............. ....+..++..+.. ....-+++||=+.+..+....+.+. .-|..|-+ .-|+....
T Consensus 271 iDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg-~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R 349 (428)
T 4b4t_K 271 IDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG-FDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRER 349 (428)
T ss_dssp EECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH-SCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHH
T ss_pred chhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC-CCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHH
Confidence 13333332222111111100 11123344555543 2344567787777766555556665 45655533 45666554
Q ss_pred HHH
Q 047623 204 RDA 206 (340)
Q Consensus 204 ~~~ 206 (340)
...
T Consensus 350 ~~I 352 (428)
T 4b4t_K 350 RLI 352 (428)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 408
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.12 E-value=1.2 Score=37.50 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=27.9
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
..+.+.+|++. +.-|+||||++..|+.. +.+|.+..-+
T Consensus 16 ~~~~g~~i~i~-G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIE-GNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEE-CSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCCCceEEEEE-CCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 34567888888 67788999998888765 5577776543
No 409
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=81.96 E-value=1.1 Score=38.40 Aligned_cols=36 Identities=31% Similarity=0.555 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
|+|++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 1 m~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 36 (256)
T 1geg_A 1 MKKVALVTGAGQGIGKA-----IALRLVKDGFAVAIADYND 36 (256)
T ss_dssp -CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 35789999999999974 7888899999999987653
No 410
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=81.81 E-value=0.95 Score=38.02 Aligned_cols=36 Identities=31% Similarity=0.586 Sum_probs=30.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
++++.|+|+.||.|+ .+|..|+++|.+|.++|-+..
T Consensus 2 ~k~vlVtGasggiG~-----~la~~l~~~G~~V~~~~r~~~ 37 (242)
T 1uay_A 2 ERSALVTGGASGLGR-----AAALALKARGYRVVVLDLRRE 37 (242)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHHTCEEEEEESSCC
T ss_pred CCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEccCcc
Confidence 578999999999887 467788888999999987754
No 411
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=81.80 E-value=1.2 Score=37.44 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=30.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+|++.|+|+.||.|+ .+|..|+++|.+|.++|-+..
T Consensus 3 ~k~vlITGas~gIG~-----~~a~~l~~~G~~V~~~~r~~~ 38 (236)
T 1ooe_A 3 SGKVIVYGGKGALGS-----AILEFFKKNGYTVLNIDLSAN 38 (236)
T ss_dssp CEEEEEETTTSHHHH-----HHHHHHHHTTEEEEEEESSCC
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEecCcc
Confidence 478999999999887 478888999999999987764
No 412
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=81.79 E-value=0.98 Score=36.43 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=19.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
+++++++ +..|+||||++..|+..+
T Consensus 5 g~~i~i~-GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLL-GAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 4566666 778999999999988765
No 413
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=81.76 E-value=3.1 Score=36.68 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=43.6
Q ss_pred CCCEEEEcCCCCCC-------HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHh---c-CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID-------AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLEC---D-GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~-------~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~---~-~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+... ......+..+|.+++|.+.+ ..+...+..+.+.+.. . ....+.+|.|+.+-.
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 47889999998542 23344557899999999875 4455665554444432 2 234678999999864
No 414
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=81.59 E-value=1.2 Score=38.45 Aligned_cols=37 Identities=35% Similarity=0.455 Sum_probs=31.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|++.|+|+.||.|+ .+|..|+++|.+|.++|-+..
T Consensus 10 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 46 (271)
T 3tzq_B 10 ENKVAIITGACGGIGL-----ETSRVLARAGARVVLADLPET 46 (271)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECTTS
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEcCCHH
Confidence 3589999999999987 478888999999999987754
No 415
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=81.55 E-value=1.3 Score=36.64 Aligned_cols=37 Identities=8% Similarity=0.127 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~ 89 (340)
.|+|.|.|+|+.||.|+. ++..|+ +.|++|.+++-++
T Consensus 3 ~mmk~vlVtGasg~iG~~-----~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQX-----LTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp CSCSEEEEESTTSHHHHH-----HHHHHHHHCCCEEEEEESSH
T ss_pred ceEEEEEEEeCCcHHHHH-----HHHHHHhcCCceEEEEecCc
Confidence 467889999999999974 666777 7899999987663
No 416
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=81.42 E-value=2.1 Score=38.58 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=45.6
Q ss_pred CCEEEEcCCCC---------CCHHHHHHHhcCCeEEEEeCCC----hhhHHHHHHHHHHHHhcC----CCceEEEEeccc
Q 047623 167 PDFILIDCPAG---------IDAGFITAITPANEAVLVTTPD----ITSLRDADRVTGLLECDG----IRDIKMVVNRVR 229 (340)
Q Consensus 167 ~D~VIiD~~~~---------~~~~~~~~l~~ad~viiv~~~~----~~s~~~~~~~~~~l~~~~----~~~~~vviN~~~ 229 (340)
..++|+|+|+. +.......+..+|.++++++.+ ..++..+..+.+.+.... ...+.+|+|+++
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 67899999872 2122333445699999999875 356777777777777643 245779999998
Q ss_pred CC
Q 047623 230 TD 231 (340)
Q Consensus 230 ~~ 231 (340)
..
T Consensus 286 l~ 287 (342)
T 1lnz_A 286 MP 287 (342)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 417
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=81.32 E-value=1.2 Score=38.86 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
-.+|++.|+|+.||.|+. +|..|++.|.+|.++|-+.
T Consensus 26 ~~~k~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~r~~ 62 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRA-----TALALAADGVTVGALGRTR 62 (283)
T ss_dssp -CCCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 345899999999999874 7788899999999998664
No 418
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=81.29 E-value=1.4 Score=34.49 Aligned_cols=66 Identities=6% Similarity=-0.038 Sum_probs=44.1
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.++|+|+.. .......+..+|.++++.+.+. .++......+..+... ....+.+|.|+.+-.
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 3678999999853 2233445677999999988753 4566666555554432 234678999999864
No 419
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=81.24 E-value=1.2 Score=37.57 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|++.|+|+.||.|+. +|..|+++|.+|.++|-+..
T Consensus 6 ~~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~ 42 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSR-----CVQAFRARNWWVASIDVVEN 42 (241)
T ss_dssp CCCEEEEETTTSHHHHH-----HHHHHHTTTCEEEEEESSCC
T ss_pred CCCEEEEECCCcHHHHH-----HHHHHHhCCCEEEEEeCChh
Confidence 45789999999998884 77888899999999987764
No 420
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=81.23 E-value=1.5 Score=36.28 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARL 78 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~ 78 (340)
+.+.++ +..|+||||++..++..+...
T Consensus 46 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFS-GTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEE-CSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhcCC
Confidence 455555 788999999999999887643
No 421
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=81.10 E-value=1.1 Score=38.63 Aligned_cols=33 Identities=36% Similarity=0.502 Sum_probs=24.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
+++|+++ +..|+||||++..||..+ |. -++|.|
T Consensus 48 g~~i~l~-G~~GsGKSTl~~~La~~l---g~--~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLV-GMMGSGKTTVGKIMARSL---GY--TFFDCD 80 (250)
T ss_dssp TCCEEEE-CSTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc---CC--cEEeCc
Confidence 4567777 677899999999998876 32 356665
No 422
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=81.02 E-value=1.4 Score=37.39 Aligned_cols=36 Identities=33% Similarity=0.538 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..|++.|+|+.||.|+ .+|..|+++|.+|.++|-+.
T Consensus 8 ~~k~vlITGas~giG~-----~~a~~l~~~G~~V~~~~r~~ 43 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQ-----AYAEALAREGAAVVVADINA 43 (253)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 4589999999999887 58888999999999988654
No 423
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=80.96 E-value=1 Score=38.99 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+|++.|+|+.||.|+. +|..|++.|.+|.++|-+.
T Consensus 4 ~k~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~r~~ 38 (264)
T 3tfo_A 4 DKVILITGASGGIGEG-----IARELGVAGAKILLGARRQ 38 (264)
T ss_dssp TCEEEESSTTSHHHHH-----HHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEeCCccHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence 5799999999999974 7888899999999998664
No 424
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=80.95 E-value=1.1 Score=37.02 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=19.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~l 75 (340)
.+++|++ .+..|+||||+...|+..+
T Consensus 18 ~g~~ivl-~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVL-IGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEE-ECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEE-ECcCCCCHHHHHHHHHhhC
Confidence 3455555 4788899999998887653
No 425
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=80.92 E-value=1.4 Score=38.21 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+|++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 29 ~~k~vlVTGas~GIG~a-----ia~~l~~~G~~Vi~~~r~~ 64 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEA-----TVRRLHADGLGVVIADLAA 64 (281)
T ss_dssp TTEEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHHH-----HHHHHHHCCCEEEEEeCCh
Confidence 35899999999998874 7888889999999998764
No 426
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=80.87 E-value=6.5 Score=31.15 Aligned_cols=66 Identities=6% Similarity=-0.018 Sum_probs=44.7
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.++|+|+... ......+..+|.++++.+.. ..++..+...+..+... ....+.+|.|+.+-.
T Consensus 59 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 36788999998542 33455667899999998865 45666666555544321 234678999999864
No 427
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.87 E-value=2.4 Score=33.51 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=48.8
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCCcccccccc
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTDMIKGEDMM 239 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~~~~~~~~~ 239 (340)
.+.+.|+|+|+.. .......+..+|.++++.+.+ ..++..+...+..+... ....+.+|.|+.+-... .
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~ 135 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA-----L 135 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC-----C
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC-----C
Confidence 3678899999853 333344567789999998864 45677766666655432 23467899999986431 1
Q ss_pred cHHHHHHHhC
Q 047623 240 SVLDIQEMLG 249 (340)
Q Consensus 240 ~~~~i~~~~g 249 (340)
...++.+.++
T Consensus 136 ~~~~i~~~~~ 145 (183)
T 1moz_A 136 SASEVSKELN 145 (183)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHhC
Confidence 2445555555
No 428
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=80.82 E-value=1.6 Score=37.84 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
-.+|++.|+|+.||.|+ .+|..|+++|.+|.++|.+..
T Consensus 8 l~gk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~~~~~ 45 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGR-----SHAVKLAEEGADIILFDICHD 45 (287)
T ss_dssp TTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECCSC
T ss_pred cCCCEEEEeCCCChHHH-----HHHHHHHHCCCeEEEEccccc
Confidence 34689999999999887 488889999999999998754
No 429
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=80.80 E-value=1.2 Score=38.74 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+|++.|+|+.||.|+ .+|..|++.|.+|.++|-+.
T Consensus 28 ~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~ 63 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGL-----AVARRLADEGCHVLCADIDG 63 (277)
T ss_dssp TTCEEEETTTTSTHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3589999999999998 47888899999999998664
No 430
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=80.77 E-value=2.4 Score=36.70 Aligned_cols=42 Identities=2% Similarity=-0.121 Sum_probs=33.6
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
..+.++.+.++-|| ||||++.+++...+++|-+++++-++..
T Consensus 19 ~~gs~~li~g~p~~-~~~~l~~qfl~~g~~~Ge~~~~~~~~e~ 60 (260)
T 3bs4_A 19 KHSLILIHEEDASS-RGKDILFYILSRKLKSDNLVGMFSISYP 60 (260)
T ss_dssp TTCEEEEEECSGGG-CHHHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred CCCcEEEEEeCCCc-cHHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 45567777655555 5559999999999999999999999865
No 431
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=80.69 E-value=1 Score=38.55 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=29.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
||++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 1 Mk~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 35 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMG-----SALRLSEAGHTVACHDESF 35 (254)
T ss_dssp -CEEEESSTTSTTHHH-----HHHHHHHTTCEEEECCGGG
T ss_pred CeEEEEeCCCchHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 4789999999999984 7888889999999987664
No 432
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=80.64 E-value=1.5 Score=38.06 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=31.1
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
-.+|++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 25 l~~k~vlVTGas~GIG~a-----ia~~l~~~G~~V~~~~r~~ 61 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRA-----TAELFAKNGAYVVVADVNE 61 (277)
T ss_dssp TTTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 346899999999999884 7888899999999998653
No 433
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=80.58 E-value=2.7 Score=33.38 Aligned_cols=66 Identities=9% Similarity=0.076 Sum_probs=44.6
Q ss_pred CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+... ......+..+|.++++.+.+ ..++..+...+..+... ....+.+|.|+.+-.
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 47789999998532 12233456799999998875 44677776666555432 234678999999864
No 434
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=80.50 E-value=1.3 Score=37.38 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=29.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
||++.|+|+.||.|+. ++..|+++|++|.++|-+..
T Consensus 1 Mk~vlVtGasg~iG~~-----l~~~L~~~g~~V~~~~r~~~ 36 (255)
T 2dkn_A 1 MSVIAITGSASGIGAA-----LKELLARAGHTVIGIDRGQA 36 (255)
T ss_dssp -CEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSSS
T ss_pred CcEEEEeCCCcHHHHH-----HHHHHHhCCCEEEEEeCChh
Confidence 4679999999988875 67778889999999987654
No 435
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=80.31 E-value=1.3 Score=38.29 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=31.8
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|++.|+|+.||.|+. +|..|+++|.+|.++|.+..
T Consensus 12 ~gk~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~ 48 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRA-----HAVRLAADGADIIAVDLCDQ 48 (278)
T ss_dssp TTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEECCSC
T ss_pred CCCEEEEECCCChHHHH-----HHHHHHHCCCeEEEEecccc
Confidence 45899999999999974 78888999999999998754
No 436
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=80.29 E-value=1.8 Score=35.10 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=20.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCc
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFS 81 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~ 81 (340)
++-+.+. +..|+||||+|..|.. +|++
T Consensus 16 G~gvli~-G~SGaGKStlal~L~~----rG~~ 42 (181)
T 3tqf_A 16 KMGVLIT-GEANIGKSELSLALID----RGHQ 42 (181)
T ss_dssp TEEEEEE-ESSSSSHHHHHHHHHH----TTCE
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHH----cCCe
Confidence 4566676 6778899999987765 6764
No 437
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=80.27 E-value=4.8 Score=32.56 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=49.8
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCCccccccccc
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTDMIKGEDMMS 240 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~~~~~~~~~~ 240 (340)
+++.++|+|+.. .......+..+|.++++.+.. ..++..+...+..+... ....+.+|.|+.+-.. ...
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~~ 143 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-----AIS 143 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-----CCC
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-----cCC
Confidence 678899999843 223344567899999998875 45677776666655432 2345789999998643 123
Q ss_pred HHHHHHHhC
Q 047623 241 VLDIQEMLG 249 (340)
Q Consensus 241 ~~~i~~~~g 249 (340)
.+++.+.++
T Consensus 144 ~~~~~~~~~ 152 (198)
T 1f6b_A 144 EERLREMFG 152 (198)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 445555554
No 438
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=80.26 E-value=1.6 Score=37.41 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=30.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+|++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 7 ~~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 42 (259)
T 4e6p_A 7 EGKSALITGSARGIGRA-----FAEAYVREGATVAIADIDI 42 (259)
T ss_dssp TTCEEEEETCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 35789999999999874 7888899999999998764
No 439
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=80.19 E-value=1.5 Score=37.46 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=31.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
++|++.|+|+.||.|+. +|..|+++|.+|.+++-+..
T Consensus 20 ~~k~vlVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~~~ 56 (253)
T 2nm0_A 20 MSRSVLVTGGNRGIGLA-----IARAFADAGDKVAITYRSGE 56 (253)
T ss_dssp CCCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSSC
T ss_pred CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCChH
Confidence 45899999999999984 77888899999999987654
No 440
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=80.17 E-value=1.3 Score=37.80 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+|++.|+|+.||.|+ .+|..|+++|.+|.++|-+.
T Consensus 5 ~gk~vlVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~ 40 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGK-----AIAARLAADGATVIVSDINA 40 (247)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3589999999999987 47888899999999987653
No 441
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=80.16 E-value=1.4 Score=38.02 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=31.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..|++.|+|+.+|.|+. +|..|++.|.+|.+.|.+.
T Consensus 6 ~gKvalVTGas~GIG~a-----iA~~la~~Ga~Vv~~~~~~ 41 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRA-----IAKKFALNDSIVVAVELLE 41 (254)
T ss_dssp TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEECCH
Confidence 35899999999999985 7788899999999998764
No 442
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=80.15 E-value=1.5 Score=35.90 Aligned_cols=27 Identities=41% Similarity=0.479 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLG 79 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g 79 (340)
+++++ +..|+||||+..-|+..+...|
T Consensus 3 ~i~i~-G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLT-GPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEE-SCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEE-CCCCChHHHHHHHHHhhcccCC
Confidence 56666 6778999999999999988667
No 443
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=80.13 E-value=1.3 Score=37.56 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=32.1
Q ss_pred CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.....|.+.|+|+.||.|+ .+|..|+++|.+|.++|-+.
T Consensus 10 ~~~~~k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 48 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGS-----AIARLLHKLGSKVIISGSNE 48 (249)
T ss_dssp CCCTTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 3456789999999999887 47788889999999988653
No 444
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.12 E-value=1.3 Score=36.73 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=17.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHH
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGL 73 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~ 73 (340)
++.|.|+ +..|+||||+|..|+.
T Consensus 34 g~~ilI~-GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLIT-GDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEE-CCCTTTTHHHHHHHHT
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHH
Confidence 4566666 6788999999877664
No 445
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=80.11 E-value=1.2 Score=39.49 Aligned_cols=40 Identities=33% Similarity=0.346 Sum_probs=33.2
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLR 92 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 92 (340)
-.+|++.|+|+.||.|+. +|..|+++|.+|.++|.+....
T Consensus 44 l~gk~~lVTGas~GIG~a-----ia~~la~~G~~Vv~~~~~~~~~ 83 (317)
T 3oec_A 44 LQGKVAFITGAARGQGRT-----HAVRLAQDGADIVAIDLCRQQP 83 (317)
T ss_dssp TTTCEEEESSCSSHHHHH-----HHHHHHHTTCEEEEEECCCCCT
T ss_pred cCCCEEEEeCCCcHHHHH-----HHHHHHHCCCeEEEEecccccc
Confidence 346899999999999974 7888899999999999876533
No 446
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=80.10 E-value=1.4 Score=37.64 Aligned_cols=36 Identities=22% Similarity=0.601 Sum_probs=30.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..|++.|+|+.||.|+ .+|..|+++|.+|.++|-+.
T Consensus 11 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 46 (252)
T 3f1l_A 11 NDRIILVTGASDGIGR-----EAAMTYARYGATVILLGRNE 46 (252)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4589999999999987 47788889999999998664
No 447
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=80.07 E-value=4.4 Score=32.39 Aligned_cols=65 Identities=8% Similarity=-0.098 Sum_probs=44.7
Q ss_pred CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHH-HHHHHHHhc-CCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDAD-RVTGLLECD-GIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~-~~~~~l~~~-~~~~~~vviN~~~~~ 231 (340)
+.+.|+|+|+.. .......+..+|.++++...+ ..++..+. .+++.+... ....+.+|.|+.+-.
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 678899999853 233344567799999998764 45566665 566666553 234677999998864
No 448
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.97 E-value=2.6 Score=35.83 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
+-+.++ +..|+||||+|..+|..+ +.++..+++
T Consensus 46 ~~vll~-G~~GtGKT~la~~la~~~---~~~~~~i~~ 78 (257)
T 1lv7_A 46 KGVLMV-GPPGTGKTLLAKAIAGEA---KVPFFTISG 78 (257)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHH---TCCEEEECS
T ss_pred CeEEEE-CcCCCCHHHHHHHHHHHc---CCCEEEEeH
Confidence 446666 678999999999998765 456655554
No 449
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=79.95 E-value=1.4 Score=37.40 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=29.9
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+|++.|+|+.||.|+. +|..|+++|.+|.+++-+.
T Consensus 7 ~k~~lVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~~ 41 (247)
T 2jah_A 7 GKVALITGASSGIGEA-----TARALAAEGAAVAIAARRV 41 (247)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence 5799999999999984 7788889999999988653
No 450
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=79.95 E-value=1.5 Score=37.27 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.|++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 7 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 41 (249)
T 2ew8_A 7 DKLAVITGGANGIGRA-----IAERFAVEGADIAIADLVP 41 (249)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEcCCc
Confidence 4789999999999984 7778888999999998765
No 451
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.95 E-value=2.1 Score=36.80 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=25.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 87 (340)
...+.+.++ +..|+|||++|..+|..+ +.+...+++
T Consensus 62 ~~~~~vLl~-G~~GtGKT~la~~ia~~~---~~~~~~i~~ 97 (272)
T 1d2n_A 62 TPLVSVLLE-GPPHSGKTALAAKIAEES---NFPFIKICS 97 (272)
T ss_dssp CSEEEEEEE-CSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred CCCeEEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence 344566666 778999999999998863 556655543
No 452
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=79.93 E-value=20 Score=31.98 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=32.0
Q ss_pred CCCCCCEEEEEEcCC--CCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 45 LAGETPRVVVITSGK--GGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 45 ~~~~~~~iI~v~s~k--GGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
...+||||+.+...- ...|-.+.+.+++..|+++|++|.++..+..
T Consensus 16 ~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 63 (406)
T 2gek_A 16 PRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASP 63 (406)
T ss_dssp -----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCT
T ss_pred cCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCc
Confidence 345677877776432 2246778889999999999999999988765
No 453
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=79.89 E-value=1.2 Score=37.36 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+.+++.|+|+.||.|+ .+|..|+++|++|.+++-+.
T Consensus 3 ~~~k~vlVtGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 39 (234)
T 2ehd_A 3 GMKGAVLITGASRGIGE-----ATARLLHAKGYRVGLMARDE 39 (234)
T ss_dssp -CCCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 35678999999999887 47788888999999987653
No 454
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=79.81 E-value=1.3 Score=37.12 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH
Q 047623 53 VVITSGKGGVGKTTTTANVGLSL 75 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~l 75 (340)
|++. +-.|+||||++..||..+
T Consensus 3 I~l~-G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIF-GPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEE-CCTTSCHHHHHHHHHHHH
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh
Confidence 4444 778999999999999876
No 455
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=79.75 E-value=1.6 Score=37.53 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=31.1
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+|++.|+|+.||.|+. +|..|+++|.+|.++|-+..
T Consensus 8 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~ 43 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRA-----IAERFVDEGSKVIDLSIHDP 43 (264)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEecCcc
Confidence 4789999999999984 77888899999999988765
No 456
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=79.72 E-value=1.5 Score=38.38 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=31.4
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|++.|+|+.||.|+ .+|..|+++|.+|.++|.+..
T Consensus 46 ~gk~vlVTGas~GIG~-----aia~~la~~G~~V~~~~r~~~ 82 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGR-----AVSIAFAKEGANIAIAYLDEE 82 (291)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCch
Confidence 4589999999999887 478888999999999987753
No 457
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=79.67 E-value=1.3 Score=37.94 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
-..+++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 27 l~~k~vlITGas~gIG~~-----la~~l~~~G~~V~~~~r~~ 63 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAA-----IARKLGSLGARVVLTARDV 63 (262)
T ss_dssp TTTCEEEESSTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred cCCCEEEEECCCChHHHH-----HHHHHHHCCCEEEEEECCH
Confidence 345899999999998874 6788889999999988654
No 458
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=79.66 E-value=1.6 Score=37.08 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.|++.|+|+.||.|+. +|..|+++|.+|.++|-+..
T Consensus 7 ~k~vlVTGas~giG~~-----ia~~l~~~G~~V~~~~r~~~ 42 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGYA-----TALAFVEAGAKVTGFDQAFT 42 (250)
T ss_dssp TCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCCC
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCchh
Confidence 4789999999999984 77888999999999987653
No 459
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=79.66 E-value=1.8 Score=36.88 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+|++.|+|+.||.|+. +|..|+++|.+|.++|-+..
T Consensus 6 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~ 41 (256)
T 2d1y_A 6 GKGVLVTGGARGIGRA-----IAQAFAREGALVALCDLRPE 41 (256)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSTT
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCChh
Confidence 4789999999999984 77888899999999987754
No 460
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.65 E-value=1.8 Score=41.42 Aligned_cols=36 Identities=31% Similarity=0.499 Sum_probs=27.8
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+.+.++ +..|+|||++|..+|..+ |.+++.+++..
T Consensus 77 ~~~lLL~-GppGtGKTtla~~la~~l---~~~~i~in~s~ 112 (516)
T 1sxj_A 77 FRAAMLY-GPPGIGKTTAAHLVAQEL---GYDILEQNASD 112 (516)
T ss_dssp CSEEEEE-CSTTSSHHHHHHHHHHHT---TCEEEEECTTS
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEEeCCC
Confidence 3566665 778999999999998876 78888777643
No 461
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=79.59 E-value=1.9 Score=39.18 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..+.++ +..|+|||++|..+|..+ |.+...+|+..
T Consensus 73 ~~ill~-Gp~GtGKT~la~~la~~l---~~~~~~~~~~~ 107 (376)
T 1um8_A 73 SNILLI-GPTGSGKTLMAQTLAKHL---DIPIAISDATS 107 (376)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence 345555 677999999999999876 67787777654
No 462
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=79.56 E-value=1.2 Score=37.66 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=30.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+|++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 13 ~~k~vlITGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 48 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAA-----AARAYAAHGASVVLLGRTE 48 (247)
T ss_dssp TTCEEEESSTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHHH-----HHHHHHHCCCEEEEEecCH
Confidence 45899999999999884 7888889999999998664
No 463
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=79.52 E-value=1.3 Score=38.54 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=31.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|++.|+|+.||.|+. +|..|+++|.+|.++|-+..
T Consensus 32 ~gk~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~r~~~ 68 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAA-----IAEGLAGAGAHVILHGVKPG 68 (275)
T ss_dssp TTCEEEETTCSSHHHHH-----HHHHHHHTTCEEEEEESSTT
T ss_pred CCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEcCCHH
Confidence 35899999999999874 78888999999999988754
No 464
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=79.50 E-value=0.98 Score=42.65 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 90 (340)
+.+.++++. +.-|+||||+..-|+-.+... |++++++|.|+.
T Consensus 136 ~~Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~ 178 (460)
T 2npi_A 136 FEGPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ 178 (460)
T ss_dssp SSCCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCcc
Confidence 456788888 566889999999999887654 525567787764
No 465
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=79.45 E-value=1.7 Score=36.37 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=25.5
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..|-.|+++ +.=|+||||++.-|+. .|..| ||+|.
T Consensus 7 ~~~~~iglT-GgigsGKStv~~~l~~----~g~~v--idaD~ 41 (210)
T 4i1u_A 7 HHMYAIGLT-GGIGSGKTTVADLFAA----RGASL--VDTDL 41 (210)
T ss_dssp CSCCEEEEE-CCTTSCHHHHHHHHHH----TTCEE--EEHHH
T ss_pred cceeEEEEE-CCCCCCHHHHHHHHHH----CCCcE--EECcH
Confidence 345678888 5568899999876654 57665 78885
No 466
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=79.42 E-value=1.1 Score=38.56 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
+|++.|+|+.||.|+ .+|..|+++|.+|.++|-+..
T Consensus 27 ~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 62 (260)
T 3gem_A 27 SAPILITGASQRVGL-----HCALRLLEHGHRVIISYRTEH 62 (260)
T ss_dssp CCCEEESSTTSHHHH-----HHHHHHHHTTCCEEEEESSCC
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCChH
Confidence 478999999999887 478888999999999987754
No 467
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=79.39 E-value=1.9 Score=36.87 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEEcCC--CCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 45 LAGETPRVVVITSGK--GGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 45 ~~~~~~~iI~v~s~k--GGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
......|.+.|+|+. ||.|+ .+|..|+++|.+|.+++.+
T Consensus 9 ~~~~~~k~vlITGa~~~~giG~-----~ia~~l~~~G~~V~~~~r~ 49 (271)
T 3ek2_A 9 MGFLDGKRILLTGLLSNRSIAY-----GIAKACKREGAELAFTYVG 49 (271)
T ss_dssp CCTTTTCEEEECCCCSTTSHHH-----HHHHHHHHTTCEEEEEESS
T ss_pred ccccCCCEEEEeCCCCCCcHHH-----HHHHHHHHcCCCEEEEecc
Confidence 345667899999987 89887 4788889999999999876
No 468
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=79.39 E-value=2.3 Score=43.36 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=46.2
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|||+.. .......+..+|.+++|++...............+...+.+ +.+++|+.+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-eEEEEECCCcc
Confidence 4788999999964 55667788999999999988654333344444444444544 56899999864
No 469
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=79.34 E-value=1.2 Score=36.80 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=20.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
|+++ +-.|+||||+|..||..+ |.. .+|.|
T Consensus 3 I~l~-G~~GsGKsT~a~~L~~~~---~~~--~i~~d 32 (216)
T 3dl0_A 3 LVLM-GLPGAGKGTQGERIVEKY---GIP--HISTG 32 (216)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHS---SCC--EEEHH
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh---CCc--EEeHH
Confidence 4454 778999999999887653 444 35553
No 470
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=79.31 E-value=1.2 Score=37.78 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLA 76 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la 76 (340)
++.|++. +--|+||||++..|+..+.
T Consensus 2 ~~~i~~~-G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIE-GNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHcC
Confidence 4567777 5578999999999998774
No 471
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=79.25 E-value=4.3 Score=36.23 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=50.3
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHh-cC--CCceEEEEecccCCcccccccc
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLEC-DG--IRDIKMVVNRVRTDMIKGEDMM 239 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~-~~--~~~~~vviN~~~~~~~~~~~~~ 239 (340)
.+.+.|+|+|+.. .......+..+|.+|+|...+ ..++..+...+..+.. .. ...+.+|.|+.+-... .
T Consensus 208 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~-----~ 282 (329)
T 3o47_A 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA-----M 282 (329)
T ss_dssp TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-----C
T ss_pred cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc-----c
Confidence 4788999999843 334556678899999998874 4556666554444432 21 2457899999986431 1
Q ss_pred cHHHHHHHhCCc
Q 047623 240 SVLDIQEMLGLA 251 (340)
Q Consensus 240 ~~~~i~~~~g~~ 251 (340)
...++.+.++..
T Consensus 283 ~~~~i~~~~~~~ 294 (329)
T 3o47_A 283 NAAEITDKLGLH 294 (329)
T ss_dssp CHHHHHHHHTCT
T ss_pred CHHHHHHHhchh
Confidence 245566666644
No 472
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=79.15 E-value=1.2 Score=39.64 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=28.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.++++++ +--|+||||+...|.... .|.++++|.-|.
T Consensus 4 i~v~~i~-G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~ 40 (318)
T 1nij_A 4 IAVTLLT-GFLGAGKTTLLRHILNEQ--HGYKIAVIENEF 40 (318)
T ss_dssp EEEEEEE-ESSSSSCHHHHHHHHHSC--CCCCEEEECSSC
T ss_pred ccEEEEE-ecCCCCHHHHHHHHHhhc--CCCcEEEEEecC
Confidence 4566666 567899999998887653 688999997764
No 473
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=79.15 E-value=1.5 Score=38.00 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+|++.|+|+.||.|+ .+|..|+++|.+|.++|-+.
T Consensus 10 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 45 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGK-----GVAAGLVAAGASVMIVGRNP 45 (281)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3589999999999987 47888899999999998664
No 474
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=79.01 E-value=1.8 Score=37.29 Aligned_cols=36 Identities=33% Similarity=0.538 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+|++.|+|+.||.|+ .+|..|+++|.+|.+++-+.
T Consensus 20 ~~k~~lVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 55 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGF-----GIAQGLAEAGCSVVVASRNL 55 (267)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4589999999999987 47788888999999987653
No 475
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=78.99 E-value=1.5 Score=37.75 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=31.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|++.|+|+.||.|+ .+|..|+++|.+|.++|-+..
T Consensus 27 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 63 (260)
T 3un1_A 27 QQKVVVITGASQGIGA-----GLVRAYRDRNYRVVATSRSIK 63 (260)
T ss_dssp TCCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChh
Confidence 4579999999999997 477888899999999987754
No 476
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=78.96 E-value=1.9 Score=37.36 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=30.2
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+.|++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 20 ~~k~vlVTGas~gIG~a-----ia~~La~~G~~V~~~~r~~ 55 (272)
T 2nwq_A 20 MSSTLFITGATSGFGEA-----CARRFAEAGWSLVLTGRRE 55 (272)
T ss_dssp -CCEEEESSTTTSSHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred cCcEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence 33789999999999984 7788889999999998664
No 477
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=78.95 E-value=1.8 Score=36.47 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=26.0
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..+.+|+++ +..|+||||++..||..+ |. ..+|.|.
T Consensus 14 ~~~~~i~i~-G~~gsGKst~~~~l~~~l---g~--~~~d~d~ 49 (236)
T 1q3t_A 14 MKTIQIAID-GPASSGKSTVAKIIAKDF---GF--TYLDTGA 49 (236)
T ss_dssp CCCCEEEEE-CSSCSSHHHHHHHHHHHH---CC--EEEEHHH
T ss_pred cCCcEEEEE-CCCCCCHHHHHHHHHHHc---CC--ceecCCC
Confidence 445678877 667899999998888754 43 4577764
No 478
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=78.94 E-value=1.3 Score=38.49 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
-++|++.|+|+.||.|+ .+|..|+++|.+|.++|-+
T Consensus 23 l~~k~~lVTGas~GIG~-----~ia~~la~~G~~V~~~~r~ 58 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGL-----AIARTLAKAGANIVLNGFG 58 (281)
T ss_dssp CTTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEECCC
T ss_pred cCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 34589999999999887 4788889999999998763
No 479
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=78.94 E-value=2 Score=36.94 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..|++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 10 ~~k~vlVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~~ 45 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTT-----LARRCAEQGADLVLAARTV 45 (264)
T ss_dssp TTCEEEEESCCTTHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCcEEEEECCCcHHHHH-----HHHHHHHCcCEEEEEeCCH
Confidence 35899999999999974 7788889999999987653
No 480
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=78.91 E-value=4.8 Score=32.31 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=51.2
Q ss_pred CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhc---CCCceEEEEecccCCccccccccc
Q 047623 167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECD---GIRDIKMVVNRVRTDMIKGEDMMS 240 (340)
Q Consensus 167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~~~~~~~~~~ 240 (340)
+.+.++|+|+... ......+..+|.++++.+... .++......+..+... ....+.+|.|+.+-.. ...
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~~ 141 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-----AVS 141 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-----CCC
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-----CCC
Confidence 6778999998532 222345577999999988754 4677776666655432 2346789999998643 123
Q ss_pred HHHHHHHhCC
Q 047623 241 VLDIQEMLGL 250 (340)
Q Consensus 241 ~~~i~~~~g~ 250 (340)
.+++.+.++.
T Consensus 142 ~~~~~~~~~~ 151 (190)
T 1m2o_B 142 EAELRSALGL 151 (190)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCC
Confidence 4556666654
No 481
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.89 E-value=3.6 Score=41.31 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+.++ +..|+|||++|..+|..+...+.+...+|+...
T Consensus 523 ~~Ll~-Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 523 SFIFL-GPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp EEEEE-SCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 56666 677999999999999999888889999988543
No 482
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=78.85 E-value=1.6 Score=38.37 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
-.+|++.|+|+.||.|+. +|..|++.|.+|.++|-+..
T Consensus 39 l~~k~vlVTGas~GIG~a-----ia~~la~~G~~V~~~~r~~~ 76 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRG-----IATVFARAGANVAVAARSPR 76 (293)
T ss_dssp CTTCEEEETTTTSHHHHH-----HHHHHHHTTCEEEEEESSGG
T ss_pred CCCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEECCHH
Confidence 346899999999999884 77888999999999987643
No 483
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=78.82 E-value=1.5 Score=38.44 Aligned_cols=37 Identities=32% Similarity=0.481 Sum_probs=31.9
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|++.|+|+.+|.|+ .+|..|++.|.+|.++|.+..
T Consensus 27 ~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~~~~~ 63 (299)
T 3t7c_A 27 EGKVAFITGAARGQGR-----SHAITLAREGADIIAIDVCKQ 63 (299)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCSC
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEecccc
Confidence 3589999999999997 478889999999999998755
No 484
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=78.81 E-value=3.7 Score=32.91 Aligned_cols=66 Identities=12% Similarity=-0.036 Sum_probs=43.7
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHH-HHHHHHHHhcC-CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDA-DRVTGLLECDG-IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~-~~~~~~l~~~~-~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..++..+ ..+++.+.... ...+.+|.|+.+-.
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 3677999999843 233344567799999998764 4555554 45555565432 24677899999853
No 485
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=78.80 E-value=1.6 Score=36.93 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=29.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
++++.|+|+.||.|+ ++|..|+++|.+|.++|-+.
T Consensus 11 ~k~vlITGasggiG~-----~la~~l~~~G~~V~~~~r~~ 45 (254)
T 2wsb_A 11 GACAAVTGAGSGIGL-----EICRAFAASGARLILIDREA 45 (254)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999887 47888888999999997653
No 486
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=78.78 E-value=3.9 Score=33.12 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=44.1
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHH-HHHHHHHHhc-CCCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDA-DRVTGLLECD-GIRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~-~~~~~~l~~~-~~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+|+.. .......+..+|.++++...+ ..++..+ ..+.+.+... ....+.+|.|+.+-.
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence 3678999999853 223334567799999987754 4566666 4566666543 234577999999864
No 487
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=78.74 E-value=1.3 Score=43.15 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=43.1
Q ss_pred CCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623 167 PDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231 (340)
Q Consensus 167 ~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~ 231 (340)
+.+.|+|||+.... .....+..+|.+++|+..+..-.......++.+...+.+ +.+++|+++..
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl~ 135 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRI 135 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEecccccc
Confidence 46899999996432 223345679999999988753333444455556665554 77999999864
No 488
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=78.69 E-value=1.9 Score=37.54 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=30.7
Q ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.-..|++.|+|+.||.|+. +|..|+++|.+|.++|..
T Consensus 26 ~~~~k~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~~~ 62 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLG-----IARALAASGFDIAITGIG 62 (280)
T ss_dssp CCCCCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred ccCCCEEEEecCCCHHHHH-----HHHHHHHCCCeEEEEeCC
Confidence 3456899999999999874 778888999999999853
No 489
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=78.64 E-value=4.3 Score=36.11 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=31.8
Q ss_pred CCCEEEEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 48 ETPRVVVITSG-KGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 48 ~~~~iI~v~s~-kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
...++|+|.|- -||+|||-++..|+..|. ++++.++-=...
T Consensus 34 ~~vPVI~VGNitvGGTGKTP~vi~L~~~L~--~~~~~ilsRGYg 75 (315)
T 4ehx_A 34 LPVPVISVGNLSVGGSGKTSFVMYLADLLK--DKRVCILSRGYK 75 (315)
T ss_dssp CSSCEEEEEESBSSCCSHHHHHHHHHHHTT--TSCEEEEECCCS
T ss_pred CCCCEEEECCEEeCCCChHHHHHHHHHHHh--hcCceEEeeccc
Confidence 44578999874 699999999999999995 456777765554
No 490
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=78.52 E-value=1.7 Score=37.40 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=30.5
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..|++.|+|+.+|.|+. +|..|+++|.+|.++|-+.
T Consensus 7 ~~k~~lVTGas~GIG~a-----ia~~l~~~G~~V~~~~r~~ 42 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLA-----TVELLLEAGAAVAFCARDG 42 (265)
T ss_dssp TTCEEEEETCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 45899999999999874 7788889999999998764
No 491
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=78.50 E-value=2.1 Score=39.93 Aligned_cols=62 Identities=24% Similarity=0.212 Sum_probs=43.6
Q ss_pred CEEEEcCCCCCCH---------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623 168 DFILIDCPAGIDA---------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM 232 (340)
Q Consensus 168 D~VIiD~~~~~~~---------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~ 232 (340)
.+.|+|||+.... .....+..+|.+++|++.+ ......++++.+...+. .+.+|+|+.+...
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~--~~~~~~~~l~~l~~~~~-piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA--PTPYEDDVVNLFKEMEI-PFVVVVNKIDVLG 154 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSS--CCHHHHHHHHHHHHTTC-CEEEECCCCTTTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCC--ChHHHHHHHHHHHhcCC-CEEEEEeCcCCCC
Confidence 6789999985321 1355677899999999873 33445667777776654 4679999998653
No 492
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=78.50 E-value=1.9 Score=36.82 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+|++.|+|+.||.|+ .+|..|+++|.+|.++|-+.
T Consensus 7 ~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~ 42 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGL-----ATVRRLVEGGAEVLLTGRNE 42 (255)
T ss_dssp TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4589999999999997 48888999999999998653
No 493
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=78.47 E-value=1.3 Score=37.75 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
..|++.|+|+.||.|+ .+|..|+++|.+|.++|-+.
T Consensus 6 ~~k~~lVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~ 41 (250)
T 3nyw_A 6 QKGLAIITGASQGIGA-----VIAAGLATDGYRVVLIARSK 41 (250)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHHHTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 4589999999999997 47788888899999998664
No 494
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=78.43 E-value=1.7 Score=37.29 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+|++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 7 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 41 (262)
T 1zem_A 7 GKVCLVTGAGGNIGLA-----TALRLAEEGTAIALLDMNR 41 (262)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 4789999999999984 7788899999999998653
No 495
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=78.41 E-value=1.8 Score=37.42 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=31.7
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG 90 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 90 (340)
.+|++.|+|+.+|.|+. +|..|+++|.+|.++|-+..
T Consensus 5 ~~k~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~r~~~ 41 (274)
T 3e03_A 5 SGKTLFITGASRGIGLA-----IALRAARDGANVAIAAKSAV 41 (274)
T ss_dssp TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCCS
T ss_pred CCcEEEEECCCChHHHH-----HHHHHHHCCCEEEEEeccch
Confidence 35899999999999874 77888999999999988764
No 496
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.40 E-value=6.4 Score=37.02 Aligned_cols=144 Identities=10% Similarity=0.120 Sum_probs=69.4
Q ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623 48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR 127 (340)
Q Consensus 48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 127 (340)
+..+-|.+. +-.|+|||++|..+|..+ |.+...+++.. -.+.+.|... ..+.+++.........+..
T Consensus 241 ~pprGILLy-GPPGTGKTlLAkAiA~e~---~~~fi~vs~s~---L~sk~vGese---k~ir~lF~~Ar~~aP~IIf--- 307 (467)
T 4b4t_H 241 DPPKGILLY-GPPGTGKTLCARAVANRT---DATFIRVIGSE---LVQKYVGEGA---RMVRELFEMARTKKACIIF--- 307 (467)
T ss_dssp CCCSEEEEC-SCTTSSHHHHHHHHHHHH---TCEEEEEEGGG---GCCCSSSHHH---HHHHHHHHHHHHTCSEEEE---
T ss_pred CCCCceEee-CCCCCcHHHHHHHHHhcc---CCCeEEEEhHH---hhcccCCHHH---HHHHHHHHHHHhcCCceEe---
Confidence 445566666 677999999998888754 55666665432 1222332211 1222222211111111111
Q ss_pred cCceeEeecCCCCCCCCCCcchh---hHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHh--cCCeEEEEeCCChhh
Q 047623 128 WSNFELLCISKPRSKLPLGFGGK---ALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAIT--PANEAVLVTTPDITS 202 (340)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~--~ad~viiv~~~~~~s 202 (340)
++.++.+......... ..... .+..++..+.. ......++||=+.+....+..+.+. .-|..|-+-.|+...
T Consensus 308 iDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~~lDg-~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~ 384 (467)
T 4b4t_H 308 FDEIDAVGGARFDDGA--GGDNEVQRTMLELITQLDG-FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384 (467)
T ss_dssp EECCTTTSBCCSSSSC--GGGGHHHHHHHHHHHHHHS-SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHH
T ss_pred ecccccccccccCcCC--CccHHHHHHHHHHHHHhhc-cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHH
Confidence 1222222221111110 01111 12233333332 2334567777777766665566665 678888888888776
Q ss_pred HHHHH
Q 047623 203 LRDAD 207 (340)
Q Consensus 203 ~~~~~ 207 (340)
...+.
T Consensus 385 R~~Il 389 (467)
T 4b4t_H 385 RANIF 389 (467)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=78.39 E-value=3 Score=34.38 Aligned_cols=66 Identities=6% Similarity=-0.028 Sum_probs=45.4
Q ss_pred CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHH-HHHHHHHHHhcC-CCceEEEEecccCC
Q 047623 166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRD-ADRVTGLLECDG-IRDIKMVVNRVRTD 231 (340)
Q Consensus 166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~-~~~~~~~l~~~~-~~~~~vviN~~~~~ 231 (340)
.+.+.|+|+++.. .......+..+|.++++.+.+ ..++.. ...+++.+.... ...+.+|.|+.+-.
T Consensus 74 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 74 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred EEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 3778899999853 233344567899999998875 456666 466667666542 24577889999864
No 498
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=78.34 E-value=1.1 Score=38.32 Aligned_cols=35 Identities=29% Similarity=0.551 Sum_probs=29.5
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
+|++.|+|+.||.|+. +|..|+++|.+|.++|-+.
T Consensus 2 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 36 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRG-----ISEKLAADGFDIAVADLPQ 36 (258)
T ss_dssp CCEEEEETTTSHHHHH-----HHHHHHHHTCEEEEEECGG
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCCc
Confidence 5789999999999984 6778888899999988664
No 499
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=78.33 E-value=1.6 Score=37.87 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89 (340)
Q Consensus 49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 89 (340)
.+|++.|+|+.+|.|+ .+|..|++.|.+|.++|-+.
T Consensus 10 ~~k~~lVTGas~gIG~-----aia~~la~~G~~V~~~~~~~ 45 (286)
T 3uve_A 10 EGKVAFVTGAARGQGR-----SHAVRLAQEGADIIAVDICK 45 (286)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCS
T ss_pred CCCEEEEeCCCchHHH-----HHHHHHHHCCCeEEEEeccc
Confidence 4589999999999887 47888999999999999874
No 500
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.25 E-value=2.5 Score=36.54 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=25.4
Q ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88 (340)
Q Consensus 50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 88 (340)
.+.+.++ +..|+|||++|..+|..+ +.++..+++.
T Consensus 51 ~~~~ll~-G~~GtGKT~la~~la~~~---~~~~~~v~~~ 85 (285)
T 3h4m_A 51 PKGILLY-GPPGTGKTLLAKAVATET---NATFIRVVGS 85 (285)
T ss_dssp CSEEEEE-SSSSSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEehH
Confidence 3456666 778999999998887654 6677776653
Done!