BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047624
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 156/329 (47%), Gaps = 23/329 (6%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLS 60
L+ L+L NN + G+IP +S+C L SL L+ N L G +P LGSLSKLR L + N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 61 GEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSS 120
GEIP + +LE L N G+IP L + +I N+L+GEIP I L +
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 121 LSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISN-----ASNLM---- 171
L+ N G +P +LG +L L++ N F G IPA++ A+N +
Sbjct: 516 LAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 172 RLTIPQNGFSGKVPSLENLHKLQWVVIA-VNHLGNGEKDDL-------EFVNSLVNAYGL 223
+ I +G + NL + Q + +N L ++ + N +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 224 ELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSXXXXXXXXXXXXXGDNQFT 283
L+++ N G +P+ +G++ + IL +G+N + G+IP N+
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 284 GRIPGRNLTSLAILVFVE---NMLEGSIP 309
GRIP + +++L +L ++ N L G IP
Sbjct: 694 GRIP-QAMSALTMLTEIDLSNNNLSGPIP 721
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 170/342 (49%), Gaps = 36/342 (10%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKL-GSLSKLRTLAVHHNNL 59
L++L + +N + G IP +L+ L LA N+ G++P L G+ L L + N+
Sbjct: 249 LKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 60 SGEIPSSFGNLSSLERLSAAANQFVGQIP-ETLGELKRMRFIGFGANKLSGEIPSSIYNL 118
G +P FG+ S LE L+ ++N F G++P +TL +++ ++ + N+ SGE+P S+ NL
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 119 S-SLSNFDFPVNQLQGGLPTDLGFTLPN-LERLNVGDNQFTGPIPASISNASNLMRLTIP 176
S SL D N G + +L N L+ L + +N FTG IP ++SN S L+ L +
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 177 QNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGG 235
N SG +PS L +L KL+ + + +N L +L +V +L E L ++ N+ G
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL------ETLILDFNDLTG 480
Query: 236 MLPEAVGNLSTRIRILRVGNNQLFGNIPSXXXXXXXXXXXXXGDNQFTGRIPGRNLTSLA 295
+P + N T + + + NN+L G IP ++ GR L +LA
Sbjct: 481 EIPSGLSN-CTNLNWISLSNNRLTGEIP-----------------KWIGR-----LENLA 517
Query: 296 ILVFVENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVI 337
IL N G+IP+ LG C+ GTIP +
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 171/384 (44%), Gaps = 48/384 (12%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLS 60
L+ L + N G + ++S CVNLE L ++ N +P LG S L+ L + N LS
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 61 GEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LS 119
G+ + + L+ L+ ++NQFVG IP LK ++++ NK +GEIP +
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 120 SLSNFDFPVNQLQGG------------------------LPTDLGFTLPNLERLNVGDNQ 155
+L+ D N G LP D + L+ L++ N+
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 156 FTGPIPASISN-ASNLMRLTIPQNGFSGKVPSLENLHK-----LQWVVIAVNHLGNGEKD 209
F+G +P S++N +++L+ L + N FSG P L NL + LQ + + N
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTG---- 408
Query: 210 DLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSXXXXX 269
+ +L N L L ++ N G +P ++G+LS ++R L++ N L G IP
Sbjct: 409 --KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYV 465
Query: 270 XXXXXXXXGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQXXXXXXXXXXX 327
N TG IP N T+L + N L G IP +G+ +
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 328 XXGTIPTEVIGLSSLSIYLDLSQN 351
G IP E+ SL I+LDL+ N
Sbjct: 526 FSGNIPAELGDCRSL-IWLDLNTN 548
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 173/376 (46%), Gaps = 42/376 (11%)
Query: 9 NTYGGQIP-DNISHCVNLESLFLAHNELVGKVPGKLGSLS-KLRTLAVHHNNLSGEI-PS 65
N + G++P D + L+ L L+ NE G++P L +LS L TL + NN SG I P+
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 66 SFGN-LSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNF 124
N ++L+ L N F G+IP TL + + N LSG IPSS+ +LS L +
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 125 DFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKV 184
+N L+G +P +L + + LE L + N TG IP+ +SN +NL +++ N +G++
Sbjct: 448 KLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 185 PS----LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEA 240
P LENL L+ ++ N +L SL+ L++NTN F G +P A
Sbjct: 507 PKWIGRLENLAILK---LSNNSFSGNIPAELGDCRSLI------WLDLNTNLFNGTIPAA 557
Query: 241 VGNLSTRI--------RILRVGNNQL------FGNIPSXXXXXXXXXXXXXGDN--QFTG 284
+ S +I R + + N+ + GN+ N T
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 285 RIPGRNLT-------SLAILVFVENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVI 337
R+ G + + S+ L NML G IP +G G+IP EV
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677
Query: 338 GLSSLSIYLDLSQNQL 353
L L+I LDLS N+L
Sbjct: 678 DLRGLNI-LDLSSNKL 692
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 163/400 (40%), Gaps = 87/400 (21%)
Query: 29 FLAHNELVGKVPG-------------------------KLGSLSKLRTLAVHHNNLSGEI 63
FL+++ + G V G LGS S L+ L V N L
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 64 PSSFG-NLSSLERLSAAANQFVGQ------IPETLGELKRMRFIGFGANKLSGEIPSS-- 114
S G L+SLE L +AN G + + GELK + G NK+SG++ S
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG---NKISGDVDVSRC 199
Query: 115 -------------------IYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQ 155
+ + S+L + D N+L G + T L+ LN+ NQ
Sbjct: 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQ 258
Query: 156 FTGPIPASISNASNLMRLTIPQNGFSGKVPSLEN--LHKLQWVVIAVNHL---------- 203
F GPIP +L L++ +N F+G++P + L + ++ NH
Sbjct: 259 FVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 204 ----------GNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRV 253
N +L +++L+ GL++L+++ N F G LPE++ NLS + L +
Sbjct: 317 CSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 254 GNNQLFGNI-PSXXXX-XXXXXXXXXGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIP 309
+N G I P+ +N FTG+IP N + L L N L G+IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 310 SSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSL-SIYLDL 348
SSLG G IP E++ + +L ++ LD
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 52 LAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEI 111
L + +N LSG IP G++ L L+ N G IP+ +G+L+ + + +NKL G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 112 PSSIYNLSSLSNFDFPVNQLQGGLPTDLGF-TLPNLERLN 150
P ++ L+ L+ D N L G +P F T P + LN
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLS 60
+ L + N G IP I L L L HN++ G +P ++G L L L + N L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 61 GEIPSSFGNLSSLERLSAAANQFVGQIPE 89
G IP + L+ L + + N G IPE
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 156/329 (47%), Gaps = 23/329 (6%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLS 60
L+ L+L NN + G+IP +S+C L SL L+ N L G +P LGSLSKLR L + N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 61 GEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSS 120
GEIP + +LE L N G+IP L + +I N+L+GEIP I L +
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 121 LSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISN-----ASNLM---- 171
L+ N G +P +LG +L L++ N F G IPA++ A+N +
Sbjct: 513 LAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 172 RLTIPQNGFSGKVPSLENLHKLQWVVIA-VNHLGNGEKDDL-------EFVNSLVNAYGL 223
+ I +G + NL + Q + +N L ++ + N +
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 631
Query: 224 ELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSXXXXXXXXXXXXXGDNQFT 283
L+++ N G +P+ +G++ + IL +G+N + G+IP N+
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 284 GRIPGRNLTSLAILVFVE---NMLEGSIP 309
GRIP + +++L +L ++ N L G IP
Sbjct: 691 GRIP-QAMSALTMLTEIDLSNNNLSGPIP 718
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 170/342 (49%), Gaps = 36/342 (10%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKL-GSLSKLRTLAVHHNNL 59
L++L + +N + G IP +L+ L LA N+ G++P L G+ L L + N+
Sbjct: 246 LKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 60 SGEIPSSFGNLSSLERLSAAANQFVGQIP-ETLGELKRMRFIGFGANKLSGEIPSSIYNL 118
G +P FG+ S LE L+ ++N F G++P +TL +++ ++ + N+ SGE+P S+ NL
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 119 S-SLSNFDFPVNQLQGGLPTDLGFTLPN-LERLNVGDNQFTGPIPASISNASNLMRLTIP 176
S SL D N G + +L N L+ L + +N FTG IP ++SN S L+ L +
Sbjct: 364 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 423
Query: 177 QNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGG 235
N SG +PS L +L KL+ + + +N L +L +V +L E L ++ N+ G
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL------ETLILDFNDLTG 477
Query: 236 MLPEAVGNLSTRIRILRVGNNQLFGNIPSXXXXXXXXXXXXXGDNQFTGRIPGRNLTSLA 295
+P + N T + + + NN+L G IP ++ GR L +LA
Sbjct: 478 EIPSGLSN-CTNLNWISLSNNRLTGEIP-----------------KWIGR-----LENLA 514
Query: 296 ILVFVENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVI 337
IL N G+IP+ LG C+ GTIP +
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 171/384 (44%), Gaps = 48/384 (12%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLS 60
L+ L + N G + ++S CVNLE L ++ N +P LG S L+ L + N LS
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 61 GEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LS 119
G+ + + L+ L+ ++NQFVG IP LK ++++ NK +GEIP +
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 120 SLSNFDFPVNQLQGG------------------------LPTDLGFTLPNLERLNVGDNQ 155
+L+ D N G LP D + L+ L++ N+
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 156 FTGPIPASISN-ASNLMRLTIPQNGFSGKVPSLENLHK-----LQWVVIAVNHLGNGEKD 209
F+G +P S++N +++L+ L + N FSG P L NL + LQ + + N
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTG---- 405
Query: 210 DLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSXXXXX 269
+ +L N L L ++ N G +P ++G+LS ++R L++ N L G IP
Sbjct: 406 --KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYV 462
Query: 270 XXXXXXXXGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQXXXXXXXXXXX 327
N TG IP N T+L + N L G IP +G+ +
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 328 XXGTIPTEVIGLSSLSIYLDLSQN 351
G IP E+ SL I+LDL+ N
Sbjct: 523 FSGNIPAELGDCRSL-IWLDLNTN 545
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 173/376 (46%), Gaps = 42/376 (11%)
Query: 9 NTYGGQIP-DNISHCVNLESLFLAHNELVGKVPGKLGSLS-KLRTLAVHHNNLSGEI-PS 65
N + G++P D + L+ L L+ NE G++P L +LS L TL + NN SG I P+
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 66 SFGN-LSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNF 124
N ++L+ L N F G+IP TL + + N LSG IPSS+ +LS L +
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 125 DFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKV 184
+N L+G +P +L + + LE L + N TG IP+ +SN +NL +++ N +G++
Sbjct: 445 KLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 185 PS----LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEA 240
P LENL L+ ++ N +L SL+ L++NTN F G +P A
Sbjct: 504 PKWIGRLENLAILK---LSNNSFSGNIPAELGDCRSLI------WLDLNTNLFNGTIPAA 554
Query: 241 VGNLSTRI--------RILRVGNNQL------FGNIPSXXXXXXXXXXXXXGDN--QFTG 284
+ S +I R + + N+ + GN+ N T
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 285 RIPGRNLT-------SLAILVFVENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVI 337
R+ G + + S+ L NML G IP +G G+IP EV
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 674
Query: 338 GLSSLSIYLDLSQNQL 353
L L+I LDLS N+L
Sbjct: 675 DLRGLNI-LDLSSNKL 689
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 163/400 (40%), Gaps = 87/400 (21%)
Query: 29 FLAHNELVGKVPG-------------------------KLGSLSKLRTLAVHHNNLSGEI 63
FL+++ + G V G LGS S L+ L V N L
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 64 PSSFG-NLSSLERLSAAANQFVGQ------IPETLGELKRMRFIGFGANKLSGEIPSS-- 114
S G L+SLE L +AN G + + GELK + G NK+SG++ S
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG---NKISGDVDVSRC 196
Query: 115 -------------------IYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQ 155
+ + S+L + D N+L G + T L+ LN+ NQ
Sbjct: 197 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQ 255
Query: 156 FTGPIPASISNASNLMRLTIPQNGFSGKVPSLEN--LHKLQWVVIAVNHL---------- 203
F GPIP +L L++ +N F+G++P + L + ++ NH
Sbjct: 256 FVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 204 ----------GNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRV 253
N +L +++L+ GL++L+++ N F G LPE++ NLS + L +
Sbjct: 314 CSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 254 GNNQLFGNI-PSXXXX-XXXXXXXXXGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIP 309
+N G I P+ +N FTG+IP N + L L N L G+IP
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 310 SSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSL-SIYLDL 348
SSLG G IP E++ + +L ++ LD
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 52 LAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEI 111
L + +N LSG IP G++ L L+ N G IP+ +G+L+ + + +NKL G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 112 PSSIYNLSSLSNFDFPVNQLQGGLPTDLGF-TLPNLERLN 150
P ++ L+ L+ D N L G +P F T P + LN
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLS 60
+ L + N G IP I L L L HN++ G +P ++G L L L + N L
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 61 GEIPSSFGNLSSLERLSAAANQFVGQIPE 89
G IP + L+ L + + N G IPE
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 99/227 (43%), Gaps = 11/227 (4%)
Query: 39 VPGKLGSLSKLRTLAVHH-NNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRM 97
+P L +L L L + NNL G IP + L+ L L G IP+ L ++K +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 98 RFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFT 157
+ F N LSG +P SI +L +L F N++ G +P G + + N+ T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 158 GPIPASISNASNLMRLTIPQNGFSGKVPSLENLHK-LQWVVIAVNHLGNGEKDDLEFVNS 216
G IP + +N NL + + +N G L K Q + +A N L DL V
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF----DLGKVGL 242
Query: 217 LVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIP 263
N GL+L N G LP+ + L + L V N L G IP
Sbjct: 243 SKNLNGLDL---RNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIP 285
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 4/203 (1%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLS 60
L L++ + G IPD +S L +L ++N L G +P + SL L + N +S
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 61 GEIPSSFGNLSSL-ERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLS 119
G IP S+G+ S L ++ + N+ G+IP T L + F+ N L G+ +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221
Query: 120 SLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNG 179
+ N L L +G + NL L++ +N+ G +P ++ L L + N
Sbjct: 222 NTQKIHLAKNSLAFDL-GKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 180 FSGKVPSLENLHKLQWVVIAVNH 202
G++P NL + A N
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNK 302
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 2/119 (1%)
Query: 237 LPEAVGNLSTRIRILRVGNNQLFGNIPSXXXXXXXXXXXXXGDNQFTGRIPG--RNLTSL 294
+P ++ NL + G N L G IP +G IP + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 295 AILVFVENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQL 353
L F N L G++P S+ G IP S L + +S+N+L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 5/185 (2%)
Query: 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ 82
+ E L L L L+KL L + +N L F +L+ L L A NQ
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 83 FVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LSSLSNFDFPVNQLQGGLPTDLGF 141
L ++ + G N+L +PS +++ L+ L NQLQ +P
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFD 152
Query: 142 TLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVN 201
L NL+ L++ NQ + L +T+ N F E L+ QW+ N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD--CSRCETLYLSQWIRENSN 210
Query: 202 HLGNG 206
+ +G
Sbjct: 211 KVKDG 215
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
H L+ L+L N+L G L+KL+ L ++ N L +F L++L+ LS
Sbjct: 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 79 AANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIY 116
+ NQ L +++ I N+ ++Y
Sbjct: 163 STNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLY 200
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 14/213 (6%)
Query: 20 SHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAA 79
C + L H + VP G ++ R L + N + F + LE L
Sbjct: 7 CECSAQDRAVLCHRKRFVAVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELN 64
Query: 80 ANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LSSLSNFDFPVNQLQGGLPTD 138
N P L +R +G +N+L IP ++ LS+L+ D N++ L D
Sbjct: 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILL--D 121
Query: 139 LGFT-LPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQ-NGFSGKVPSLENLHKLQWV 196
F L NL+ L VGDN + S ++L +LT+ + N S +L +LH L +
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL--I 179
Query: 197 VIAVNHLGNGEKDDLEFVNSLVNAYGLELLEIN 229
V+ + HL D F Y L++LEI+
Sbjct: 180 VLRLRHLNINAIRDYSF----KRLYRLKVLEIS 208
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%)
Query: 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSG 61
R+L L N D + +LE L L N + PG +L LRTL + N L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 62 EIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKL 107
F LS+L +L + N+ V + +L ++ + G N L
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 5/185 (2%)
Query: 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ 82
+ E L L L L+KL L + +N L F +L+ L L A NQ
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 83 FVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LSSLSNFDFPVNQLQGGLPTDLGF 141
L ++ + G N+L +PS +++ L+ L NQLQ +P
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFD 152
Query: 142 TLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVN 201
L NL+ L++ NQ + L +T+ N F E L+ QW+ N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD--CSRCEILYLSQWIRENSN 210
Query: 202 HLGNG 206
+ +G
Sbjct: 211 KVKDG 215
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
H L+ L+L N+L G L+KL+ L ++ N L +F L++L+ LS
Sbjct: 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 79 AANQFVGQIP----ETLGELKRMRFIG 101
+ NQ + +P + LG+L+ + G
Sbjct: 163 STNQ-LQSVPHGAFDRLGKLQTITLFG 188
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV 84
L+ L L+ E+ G SLS L TL + N + +F LSSL++L A
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 85 GQIPETLGELKRMRFIGFGANKL-SGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDL 139
+G LK ++ + N + S ++P NL++L + D N++Q TDL
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 45 SLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQ-IPETLGELKRMRFIGFG 103
SL L L + H + F LSSLE L A N F +P+ EL+ + F+
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 104 ANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIP 161
+L P++ +LSSL + NQL+ +P + L +L+++ + N + P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 1 LRILWLDNNTYGGQ-IPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNL 59
L +L + N++ +PD + NL L L+ +L P SLS L+ L + N L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 60 SGEIPSSFGNLSSLERLSAAANQFVGQIPE 89
F L+SL+++ N + P
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83
+L +L L N + G LS L+ L NL+ G+L +L+ L+ A N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 84 VG-QIPETLGELKRMRFIGFGANKL 107
++PE L + + +NK+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV 84
L+ L L+ E+ G SLS L TL + N + +F LSSL++L A
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 85 GQIPETLGELKRMRFIGFGANKL-SGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDL 139
+G LK ++ + N + S ++P NL++L + D N++Q TDL
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 13/177 (7%)
Query: 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83
+L +L L N + G LS L+ L NL+ G+L +L+ L+ A N
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 84 VG-QIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSL-------SNFDFPVNQLQGGL 135
++PE L + + +NK+ + + L + P+N +Q G
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG- 196
Query: 136 PTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHK 192
F L+ L + NQ ++L ++ + N + P ++ L +
Sbjct: 197 ----AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 249
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV 84
L+ L L+ E+ G SLS L TL + N + +F LSSL++L A
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 85 GQIPETLGELKRMRFIGFGANKL-SGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDL 139
+G LK ++ + N + S ++P NL++L + D N++Q TDL
Sbjct: 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 6/154 (3%)
Query: 45 SLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQ-IPETLGELKRMRFIGFG 103
SL L L + H + F LSSLE L A N F +P+ EL+ + F+
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 104 ANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPAS 163
+L P++ +LSSL + N L T L +L+ L+ N
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561
Query: 164 ISN-ASNLMRLTIPQNGFSGKVPSLENLHKLQWV 196
+ + S+L L + QN F+ + E+ LQW+
Sbjct: 562 LQHFPSSLAFLNLTQNDFAC---TCEHQSFLQWI 592
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 4/142 (2%)
Query: 1 LRILWLDNNTYGGQ-IPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNL 59
L +L + N++ +PD + NL L L+ +L P SLS L+ L + HNN
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 60 SGEIPSSFGNLSSLERLSAAANQFVGQIPETLGEL-KRMRFIGFGANKL--SGEIPSSIY 116
+ L+SL+ L + N + + L + F+ N + E S +
Sbjct: 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 590
Query: 117 NLSSLSNFDFPVNQLQGGLPTD 138
+ V +++ P+D
Sbjct: 591 WIKDQRQLLVEVERMECATPSD 612
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83
+L +L L N + G LS L+ L NL+ G+L +L+ L+ A N
Sbjct: 101 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160
Query: 84 VG-QIPETLGELKRMRFIGFGANKLSG 109
++PE L + + +NK+
Sbjct: 161 QSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV 84
L+ L L+ E+ G SLS L TL + N + +F LSSL++L A
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 85 GQIPETLGELKRMRFIGFGANKL-SGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDL 139
+G LK ++ + N + S ++P NL++L + D N++Q TDL
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 13/177 (7%)
Query: 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83
+L +L L N + G LS L+ L NL+ G+L +L+ L+ A N
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 84 VG-QIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSL-------SNFDFPVNQLQGGL 135
++PE L + + +NK+ + + L + P+N +Q G
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG- 196
Query: 136 PTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHK 192
F L+ L + NQ ++L ++ + N + P ++ L +
Sbjct: 197 ----AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 249
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV 84
L+ L L+ E+ G SLS L TL + N + +F LSSL++L A
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 85 GQIPETLGELKRMRFIGFGANKL-SGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDL 139
+G LK ++ + N + S ++P NL++L + D N++Q TDL
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 13/177 (7%)
Query: 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83
+L +L L N + G LS L+ L NL+ G+L +L+ L+ A N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 84 VG-QIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSL-------SNFDFPVNQLQGGL 135
++PE L + + +NK+ + + L + P+N +Q G
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG- 195
Query: 136 PTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHK 192
F L+ L + NQ ++L ++ + N + P ++ L +
Sbjct: 196 ----AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 248
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV 84
L+ L L+ E+ G SLS L TL + N + +F LSSL++L A
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 85 GQIPETLGELKRMRFIGFGANKL-SGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDL 139
+G LK ++ + N + S ++P NL++L + D N++Q TDL
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 13/177 (7%)
Query: 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83
+L +L L N + G LS L+ L NL+ G+L +L+ L+ A N
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 138
Query: 84 VG-QIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSL-------SNFDFPVNQLQGGL 135
++PE L + + +NK+ + + L + P+N +Q G
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG- 197
Query: 136 PTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHK 192
F L+ L + NQ ++L ++ + N + P ++ L +
Sbjct: 198 ----AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 250
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV 84
L+ L L+ E+ G SLS L TL + N + +F LSSL++L A
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 85 GQIPETLGELKRMRFIGFGANKL-SGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDL 139
+G LK ++ + N + S ++P NL++L + D N++Q TDL
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 6/154 (3%)
Query: 45 SLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQ-IPETLGELKRMRFIGFG 103
SL L L + H + F LSSLE L A N F +P+ EL+ + F+
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 104 ANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPAS 163
+L P++ +LSSL + N L T L +L+ L+ N
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 164 ISN-ASNLMRLTIPQNGFSGKVPSLENLHKLQWV 196
+ + S+L L + QN F+ + E+ LQW+
Sbjct: 538 LQHFPSSLAFLNLTQNDFAC---TCEHQSFLQWI 568
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 1 LRILWLDNNTYGGQ-IPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNL 59
L +L + N++ +PD + NL L L+ +L P SLS L+ L + HNN
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 60 SGEIPSSFGNLSSLERLSAAANQFVGQIPETL 91
+ L+SL+ L + N + + L
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83
+L +L L N + G LS L+ L NL+ G+L +L+ L+ A N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 84 VG-QIPETLGELKRMRFIGFGANKLSG 109
++PE L + + +NK+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 3/160 (1%)
Query: 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ 82
L L+L N+L G L L TL V N L F L +L L NQ
Sbjct: 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 83 FVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LSSLSNFDFPVNQLQGGLPTDLGF 141
P L ++ ++ G N+L +P +++ L+SL NQL+ +P
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFD 178
Query: 142 TLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFS 181
L L+ L + +NQ + + L L + +N +
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 7/184 (3%)
Query: 15 IPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLE 74
IP NI + + L L N+L L+KLR L ++ N L F L +LE
Sbjct: 31 IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 75 RLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGG 134
L N+ +L + + N+L P +L+ L+ N+LQ
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-S 147
Query: 135 LPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFS----GKVPSLENL 190
LP + L +L+ L + +NQ + + L L + N G SLE L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Query: 191 HKLQ 194
LQ
Sbjct: 208 KMLQ 211
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 9/162 (5%)
Query: 98 RFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFT 157
+ + +NKLS + + L+ L N+LQ LP + L NLE L V DN+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ 98
Query: 158 GPIPASISNASNLMRLTIPQNGFSGKVPSL-ENLHKLQWVVIAVNHLGNGEKDDLEFVNS 216
NL L + +N P + ++L KL ++ + N L + K + + S
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 217 LVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQL 258
L L L NN +PE + T ++ L++ NNQL
Sbjct: 159 LKE---LRLY----NNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Query: 4 LWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEI 63
L LD N P L L L +NEL G L+ L+ L +++N L
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173
Query: 64 PSSFGNLSSLERLSAAANQFVGQIPE-TLGELKRMRFIGFGANKLSGEIPSSIY 116
+F L+ L+ L NQ + ++PE L++++ + N IY
Sbjct: 174 EGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIY 226
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV 84
L+ L L+ E+ G SLS L TL + N + +F LSSL++L A
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 85 GQIPETLGELKRMRFIGFGANKL-SGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDL 139
+G LK ++ + N + S ++P NL++L + D N++Q TDL
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 15/181 (8%)
Query: 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83
+L +L L N + G LS L+ L NL+ G+L +L+ L+ A N
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLI 138
Query: 84 VG-QIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSL-------SNFDFPVNQLQGGL 135
++PE L + + +NK+ + + L + P+N +Q G
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG- 197
Query: 136 PTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQW 195
F L+ L + NQ ++L ++ + N + P ++ L + W
Sbjct: 198 ----AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR--W 251
Query: 196 V 196
+
Sbjct: 252 L 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 46/200 (23%)
Query: 28 LFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV--- 84
L L +N++ G +L L TL + +N +S P +F L LERL + NQ
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 85 GQIPETLGELK------------------RMRFIGFGANKLSGEIPSSIYN--------L 118
++P+TL EL+ +M + G N L S I N L
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQGMKKL 173
Query: 119 SSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQN 178
S + D + + GLP P+L L++ N+ T AS+ +NL +L + N
Sbjct: 174 SYIRIADTNITTIPQGLP-------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 179 GFS-------GKVPSLENLH 191
S P L LH
Sbjct: 227 SISAVDNGSLANTPHLRELH 246
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 46/200 (23%)
Query: 28 LFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV--- 84
L L +N++ G +L L TL + +N +S P +F L LERL + NQ
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 85 GQIPETLGELK------------------RMRFIGFGANKLSGEIPSSIYN--------L 118
++P+TL EL+ +M + G N L S I N L
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQGMKKL 173
Query: 119 SSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQN 178
S + D + + GLP P+L L++ N+ T AS+ +NL +L + N
Sbjct: 174 SYIRIADTNITTIPQGLP-------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 179 GFS-------GKVPSLENLH 191
S P L LH
Sbjct: 227 SISAVDNGSLANTPHLRELH 246
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 14 QIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSL 73
++P I + NL L L+HN L +P +LGS +L+ +N+ +P FGNL +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNL 318
Query: 74 ERLSAAANQFVGQIPETLGE 93
+ L N Q + L E
Sbjct: 319 QFLGVEGNPLEKQFLKILTE 338
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ 82
NL+ L L N+L G L+ L L ++HN L F L++L RL NQ
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ 168
Query: 83 FVGQIPE-TLGELKRMRFIGFGANKLSGEIPSSIYN-LSSLSNF 124
+ +PE +L +++ + N+L +P +++ L+SL++
Sbjct: 169 -LQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHI 210
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 27/139 (19%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
+ NL L L N+L G L+ L+ L + N L F L++L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 79 AANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LSSLSNFDFPVNQLQGGLPT 137
NQ +P +++ L++L+ D NQLQ LP
Sbjct: 141 YHNQL-------------------------QSLPKGVFDKLTNLTRLDLDNNQLQ-SLPE 174
Query: 138 DLGFTLPNLERLNVGDNQF 156
+ L L++L++ DNQ
Sbjct: 175 GVFDKLTQLKQLSLNDNQL 193
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
Query: 29 FLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIP 88
+A+N + V G + L +R LA+ N L S+ L++L L NQ
Sbjct: 46 IIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPN 102
Query: 89 ETLGELKRMRFIGFGANKLSGEIPSSIYN-LSSLSNFDFPVNQLQGGLPTDLGFTLPNLE 147
+L ++ + N+L +P +++ L++L+ NQLQ LP + L NL
Sbjct: 103 GVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLT 160
Query: 148 RLNVGDNQFTGPIPASISNASNLMRLTIPQN 178
RL++ +NQ + L +L++ N
Sbjct: 161 RLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN 191
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 7/157 (4%)
Query: 8 NNTYGGQIPDNISHCVNLESLFLAHNEL--VGKVPGKLGSLSKLRTLAVHHNNLS-GEIP 64
NN + +N H LE+L L N+L + K+ + L+ L + N++S E
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392
Query: 65 SSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNF 124
SL L+ ++N I L R++ + +NK+ IP + L +L
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIKS-IPKQVVKLEALQEL 449
Query: 125 DFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIP 161
+ NQL+ +P + L +L+++ + N + P
Sbjct: 450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%)
Query: 4 LWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEI 63
LWL+NN P H VNL+ L+ N+L G L++L L ++ N+L
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 64 PSSFGNLSSLERL 76
+F NL SL +
Sbjct: 98 RGAFDNLKSLTHI 110
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 128/301 (42%), Gaps = 61/301 (20%)
Query: 17 DNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERL 76
D + + NL + ++N+L P L +L+KL + +++N ++ P NL++L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 77 SAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLP 136
+ NQ P L L + + +N +S S++ L+SL +F NQ+
Sbjct: 113 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQV----- 163
Query: 137 TDLG--FTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVP--SLENLHK 192
TDL L LERL++ N+ + + ++ +NL L N S P L NL +
Sbjct: 164 TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDE 221
Query: 193 LQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLS--TRIRI 250
L ++N GN KD + +L + L L++ N + P LS T++
Sbjct: 222 L-----SLN--GNQLKD----IGTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTE 265
Query: 251 LRVGNNQLFGNIPSXXXXXXXXXXXXXGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPS 310
L++G NQ+ NI P LT+L L EN LE P
Sbjct: 266 LKLGANQI-SNIS-----------------------PLAGLTALTNLELNENQLEDISPI 301
Query: 311 S 311
S
Sbjct: 302 S 302
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
IS+ NL L L N + P + SL+KL+ L ++N +S SS NL+++ LSA
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 356
Query: 79 AANQFVGQIPETLGELKRMRFIGFGAN---------KLSGEIPSSIYNLS 119
NQ P L L R+ +G K + IP+++ N++
Sbjct: 357 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Query: 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ 82
N + L+L N++ PG SL L+ L + N L F +L+ L L NQ
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 83 FVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQG 133
L ++ + NKL+ E+P I L+ L++ NQL+
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVP-GKLGSLSKLRTLAVHHNNLS 60
+IL+L +N P +NL+ L+L N+L G +P G SL++L L + N L+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 61 GEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LS 119
+ F L L+ L N+ ++P + L + + N+L IP ++ LS
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLS 159
Query: 120 SLSN 123
SL++
Sbjct: 160 SLTH 163
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 127/301 (42%), Gaps = 61/301 (20%)
Query: 17 DNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERL 76
D + + NL + ++N+L P L +L+KL + +++N ++ P NL++L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 77 SAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLP 136
+ NQ P L L + + +N +S S++ L+SL F NQ+
Sbjct: 113 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQV----- 163
Query: 137 TDLG--FTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVP--SLENLHK 192
TDL L LERL++ N+ + + ++ +NL L N S P L NL +
Sbjct: 164 TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDE 221
Query: 193 LQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLS--TRIRI 250
L ++N GN KD + +L + L L++ N + P LS T++
Sbjct: 222 L-----SLN--GNQLKD----IGTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTE 265
Query: 251 LRVGNNQLFGNIPSXXXXXXXXXXXXXGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPS 310
L++G NQ+ NI P LT+L L EN LE P
Sbjct: 266 LKLGANQI-SNIS-----------------------PLAGLTALTNLELNENQLEDISPI 301
Query: 311 S 311
S
Sbjct: 302 S 302
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
IS+ NL L L N + P + SL+KL+ L +N +S SS NL+++ LSA
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSA 356
Query: 79 AANQFVGQIPETLGELKRMRFIGFGAN---------KLSGEIPSSIYNLS 119
NQ P L L R+ +G K + IP+++ N++
Sbjct: 357 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 127/301 (42%), Gaps = 61/301 (20%)
Query: 17 DNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERL 76
D + + NL + ++N+L P L +L+KL + +++N ++ P NL++L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 77 SAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLP 136
+ NQ P L L + + +N +S S++ L+SL F NQ+
Sbjct: 113 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQV----- 163
Query: 137 TDLG--FTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVP--SLENLHK 192
TDL L LERL++ N+ + + ++ +NL L N S P L NL +
Sbjct: 164 TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDE 221
Query: 193 LQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLS--TRIRI 250
L ++N GN KD + +L + L L++ N + P LS T++
Sbjct: 222 L-----SLN--GNQLKD----IGTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTE 265
Query: 251 LRVGNNQLFGNIPSXXXXXXXXXXXXXGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPS 310
L++G NQ+ NI P LT+L L EN LE P
Sbjct: 266 LKLGANQI-SNIS-----------------------PLAGLTALTNLELNENQLEDISPI 301
Query: 311 S 311
S
Sbjct: 302 S 302
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
IS+ NL L L N + P + SL+KL+ L ++N +S SS NL+++ LSA
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 356
Query: 79 AANQFVGQIPETLGELKRMRFIGFGAN---------KLSGEIPSSIYNLS 119
NQ P L L R+ +G K + IP+++ N++
Sbjct: 357 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 6/154 (3%)
Query: 45 SLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQ-IPETLGELKRMRFIGFG 103
SL L L + H + F LSSLE L A N F +P+ EL+ + F+
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 104 ANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPAS 163
+L P++ +LSSL + N L T L +L+ L+ N
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242
Query: 164 ISN-ASNLMRLTIPQNGFSGKVPSLENLHKLQWV 196
+ + S+L L + QN F+ + E+ LQW+
Sbjct: 243 LQHFPSSLAFLNLTQNDFAC---TCEHQSFLQWI 273
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 1 LRILWLDNNTYGGQ-IPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNL 59
L +L + N++ +PD + NL L L+ +L P SLS L+ L + HNN
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 60 SGEIPSSFGNLSSLERLSAAANQFVGQIPETL 91
+ L+SL+ L + N + + L
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 5/156 (3%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGK-LGSLSKLRTLAVHHNNL 59
L+ L+L +N D NL LFL H + VP + L L L +H N +
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFL-HGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 60 SGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLS 119
+ P +F +L L L AN E L L+ ++++ N + + +
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WA 248
Query: 120 SLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQ 155
L F +++ LP L +L+RL D Q
Sbjct: 249 WLQKFRGSSSEVPCSLPQRLAGR--DLKRLAANDLQ 282
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 88/233 (37%), Gaps = 34/233 (14%)
Query: 26 ESLFLAHNELVGKVPGK-LGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN-QF 83
+ +FL H + VP + L L +H N L+ ++F L+ LE+L + N Q
Sbjct: 35 QRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 84 VGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTL 143
P T L R+ + L P L++L N LQ LP D L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDL 152
Query: 144 PNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHL 203
NL L + N+ + ++P+ F G LH L +++ N +
Sbjct: 153 GNLTHLFLHGNRIS----------------SVPERAFRG-------LHSLDRLLLHQNRV 189
Query: 204 GNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNN 256
+ + L+ Y + NN + EA+ L ++ LR+ +N
Sbjct: 190 AHVHPHAFRDLGRLMTLY------LFANNLSALPTEALAPLRA-LQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 5/156 (3%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGK-LGSLSKLRTLAVHHNNL 59
L+ L+L +N D NL LFL H + VP + L L L +H N +
Sbjct: 130 LQYLYLQDNALQALPDDTFRDLGNLTHLFL-HGNRISSVPERAFRGLHSLDRLLLHQNRV 188
Query: 60 SGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLS 119
+ P +F +L L L AN E L L+ ++++ N + + +
Sbjct: 189 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WA 247
Query: 120 SLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQ 155
L F +++ LP L +L+RL D Q
Sbjct: 248 WLQKFRGSSSEVPCSLPQRLAGR--DLKRLAANDLQ 281
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 88/233 (37%), Gaps = 34/233 (14%)
Query: 26 ESLFLAHNELVGKVPGK-LGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN-QF 83
+ +FL H + VP + L L +H N L+ ++F L+ LE+L + N Q
Sbjct: 34 QRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 92
Query: 84 VGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTL 143
P T L R+ + L P L++L N LQ LP D L
Sbjct: 93 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDL 151
Query: 144 PNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHL 203
NL L + N+ + ++P+ F G LH L +++ N +
Sbjct: 152 GNLTHLFLHGNRIS----------------SVPERAFRG-------LHSLDRLLLHQNRV 188
Query: 204 GNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNN 256
+ + L+ Y + NN + EA+ L ++ LR+ +N
Sbjct: 189 AHVHPHAFRDLGRLMTLY------LFANNLSALPTEALAPLRA-LQYLRLNDN 234
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 126/301 (41%), Gaps = 62/301 (20%)
Query: 17 DNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERL 76
D + + NL + ++N+L P L +L+KL + +++N ++ P NL++L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 77 SAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLP 136
+ NQ P L L + + +N +S S++ L+SL +F G
Sbjct: 113 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF------GNQV 162
Query: 137 TDLG--FTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVP--SLENLHK 192
TDL L LERL++ N+ + + ++ +NL L N S P L NL +
Sbjct: 163 TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 193 LQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLS--TRIRI 250
L ++N GN KD + +L + L L++ N + P LS T++
Sbjct: 221 L-----SLN--GNQLKD----IGTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTE 264
Query: 251 LRVGNNQLFGNIPSXXXXXXXXXXXXXGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPS 310
L++G NQ+ NI P LT+L L EN LE P
Sbjct: 265 LKLGANQI-SNIS-----------------------PLAGLTALTNLELNENQLEDISPI 300
Query: 311 S 311
S
Sbjct: 301 S 301
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
IS+ NL L L N + P + SL+KL+ L ++N +S SS NL+++ LSA
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 355
Query: 79 AANQFVGQIPETLGELKRMRFIGFGAN---------KLSGEIPSSIYNLS 119
NQ P L L R+ +G K + IP+++ N++
Sbjct: 356 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 403
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 126/301 (41%), Gaps = 62/301 (20%)
Query: 17 DNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERL 76
D + + NL + ++N+L P L +L+KL + +++N ++ P NL++L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 77 SAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLP 136
+ NQ P L L + + +N +S S++ L+SL +F G
Sbjct: 113 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF------GNQV 162
Query: 137 TDLG--FTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVP--SLENLHK 192
TDL L LERL++ N+ + + ++ +NL L N S P L NL +
Sbjct: 163 TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 193 LQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLS--TRIRI 250
L ++N GN KD + +L + L L++ N + P LS T++
Sbjct: 221 L-----SLN--GNQLKD----IGTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTE 264
Query: 251 LRVGNNQLFGNIPSXXXXXXXXXXXXXGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPS 310
L++G NQ+ NI P LT+L L EN LE P
Sbjct: 265 LKLGANQI-SNIS-----------------------PLAGLTALTNLELNENQLEDISPI 300
Query: 311 S 311
S
Sbjct: 301 S 301
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
IS+ NL L L N + P + SL+KL+ L +N +S SS NL+++ LSA
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSA 355
Query: 79 AANQFVGQIPETLGELKRMRFIGFGAN---------KLSGEIPSSIYNLS 119
NQ P L L R+ +G K + IP+++ N++
Sbjct: 356 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 403
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 15 IPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLE 74
IP N++ V LE L L+ N L PG L+ LR L + H ++ ++F +L SLE
Sbjct: 171 IP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 75 RLSAAANQFVGQIPETLGELKRMRFIGFGAN 105
L+ + N + + L R+ + N
Sbjct: 230 ELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 15 IPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLE 74
IP N++ V LE L L+ N L PG L+ LR L + H ++ ++F +L SLE
Sbjct: 171 IP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 75 RLSAAANQFVGQIPETLGELKRMRFIGFGAN 105
L+ + N + + L R+ + N
Sbjct: 230 ELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
IS+ NL L L N + P + SL+KL+ L ++N +S SS NL+++ LSA
Sbjct: 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 360
Query: 79 AANQFVGQIPETLGELKRMRFIGFGAN---------KLSGEIPSSIYNLS 119
NQ P L L R+ +G K + IP+++ N++
Sbjct: 361 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 125/301 (41%), Gaps = 62/301 (20%)
Query: 17 DNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERL 76
D + + NL + ++N+L P L +L+KL + +++N ++ P NL++L L
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117
Query: 77 SAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLP 136
+ NQ P L L + + +N +S S++ L+SL F G
Sbjct: 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF------GNQV 167
Query: 137 TDLG--FTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVP--SLENLHK 192
TDL L LERL++ N+ + + ++ +NL L N S P L NL +
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDE 225
Query: 193 LQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLS--TRIRI 250
L ++N GN KD + +L + L L++ N + P LS T++
Sbjct: 226 L-----SLN--GNQLKD----IGTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTE 269
Query: 251 LRVGNNQLFGNIPSXXXXXXXXXXXXXGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPS 310
L++G NQ+ NI P LT+L L EN LE P
Sbjct: 270 LKLGANQI-SNIS-----------------------PLAGLTALTNLELNENQLEDISPI 305
Query: 311 S 311
S
Sbjct: 306 S 306
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 64 PSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKL-SGEIPSSIYNLSSLS 122
P SF L+SLE L A + +G+L ++ + N + S ++P+ NL++L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 123 NFDFPVNQLQGGLPTDLGFTLPN 145
+ D N +Q DL F N
Sbjct: 152 HVDLSYNYIQTITVNDLQFLREN 174
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 64 PSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKL-SGEIPSSIYNLSSLS 122
P SF L+SLE L A + +G+L ++ + N + S ++P+ NL++L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 123 NFDFPVNQLQGGLPTDLGFTLPN 145
+ D N +Q DL F N
Sbjct: 157 HVDLSYNYIQTITVNDLQFLREN 179
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 22/135 (16%)
Query: 62 EIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSL 121
E+P + + LE L+ A N +P ++ L R+R + A E+P + + +
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDA- 175
Query: 122 SNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTG--PIPASISNASNLMRLTIPQNG 179
+ QG L NL+ L + ++TG +PASI+N NL L I +
Sbjct: 176 ------SGEHQG---------LVNLQSLRL---EWTGIRSLPASIANLQNLKSLKIRNSP 217
Query: 180 FSGKVPSLENLHKLQ 194
S P++ +L KL+
Sbjct: 218 LSALGPAIHHLPKLE 232
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83
++ L+L N+ VP +L + L + + +N +S SF N++ L L + N+
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 84 VGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LSSLSNFDFPVNQL 131
P T LK +R + N +S +P +N LS+LS+ N L
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 125/301 (41%), Gaps = 62/301 (20%)
Query: 17 DNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERL 76
D + + NL + ++N+L P L +L+KL + +++N ++ P NL++L L
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 116
Query: 77 SAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLP 136
+ NQ P L L + + +N +S S++ L+SL F G
Sbjct: 117 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF------GNQV 166
Query: 137 TDLG--FTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVP--SLENLHK 192
TDL L LERL++ N+ + + ++ +NL L N S P L NL +
Sbjct: 167 TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDE 224
Query: 193 LQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLS--TRIRI 250
L ++N GN KD + +L + L L++ N + P LS T++
Sbjct: 225 L-----SLN--GNQLKD----IGTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTE 268
Query: 251 LRVGNNQLFGNIPSXXXXXXXXXXXXXGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPS 310
L++G NQ+ NI P LT+L L EN LE P
Sbjct: 269 LKLGANQI-SNIS-----------------------PLAGLTALTNLELNENQLEDISPI 304
Query: 311 S 311
S
Sbjct: 305 S 305
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
IS+ NL L L N + P + SL+KL+ L +N +S SS NL+++ LSA
Sbjct: 304 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSA 359
Query: 79 AANQFVGQIPETLGELKRMRFIGFGAN---------KLSGEIPSSIYNLS 119
NQ P L L R+ +G K + IP+++ N++
Sbjct: 360 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 407
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Query: 15 IPDNI-SHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSL 73
+PD + NL L LAHN+L G L+ L L + +N L F L+ L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 74 ERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIY 116
+ L NQ L +++I N P Y
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 226
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ 82
NL+ L L N+L G L+ L L + HN L F L++L L + NQ
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168
Query: 83 FVGQIPE-TLGELKRMRFIGFGANKLSGEIPSSIYN-LSSL 121
+ +PE +L +++ + N+L +P +++ L+SL
Sbjct: 169 -LQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSL 207
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 3/144 (2%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
+ NL L L N+L G L+ L+ L + N L F L++L L+
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 79 AANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LSSLSNFDFPVNQLQGGLPT 137
A NQ +L + + N+L +P +++ L+ L + NQL+ +P
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLK-SVPD 198
Query: 138 DLGFTLPNLERLNVGDNQFTGPIP 161
+ L +L+ + + DN + P
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 33/165 (20%)
Query: 94 LKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGD 153
L +R++ G NKL S++ L++L+ NQLQ LP + L NL+ L + +
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVE 118
Query: 154 NQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEF 213
NQ ++P F + L L ++ +A N L + K +
Sbjct: 119 NQLQ----------------SLPDGVF-------DKLTNLTYLNLAHNQLQSLPKGVFDK 155
Query: 214 VNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQL 258
+ +L L+++ N LPE V + T+++ LR+ NQL
Sbjct: 156 LTNLTE------LDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQL 193
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 5/148 (3%)
Query: 47 SKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANK 106
S ++T + + + + S F + + LE+L+ A N+ L + + N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 107 LSGEIPSSIY-NLSSLSNFDFPVNQLQG-GLPTDLGFTLPNLERLNVGDNQFTGPIPASI 164
L G I S ++ NL L D N ++ G + LG LPNL+ L + NQ
Sbjct: 335 L-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG--LPNLKELALDTNQLKSVPDGIF 391
Query: 165 SNASNLMRLTIPQNGFSGKVPSLENLHK 192
++L ++ + N + P ++ L +
Sbjct: 392 DRLTSLQKIWLHTNPWDCSCPRIDYLSR 419
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
SH +LE L LA NE+ L+ L L + N L F NL LE L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 79 AANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LSSLSNFDFPVNQLQGGLP 136
+ N ++ L ++ + N+L +P I++ L+SL N P
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPS-SFGNLSSLERLSAAAN 81
NL +L L N L G LSKL+ L + +N + IPS +F + SL RL
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLD---- 166
Query: 82 QFVGQIPETLGELKRMRFIGFGA 104
LGELKR+ +I GA
Sbjct: 167 ---------LGELKRLSYISEGA 180
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 73/186 (39%), Gaps = 34/186 (18%)
Query: 17 DNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPS-SFGNLSSLER 75
D H +LE L L N + G L+ L TL + N L+ IPS +F LS L
Sbjct: 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRE 151
Query: 76 L-----------SAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNF 124
L S A N+ + LGELK++ +I GA + ++NL L+
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE-------GLFNLKYLNLG 204
Query: 125 DFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLT--------IP 176
+ + P L LE L + N F P S S+L +L I
Sbjct: 205 MCNIKDMPNLTP------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258
Query: 177 QNGFSG 182
+N F G
Sbjct: 259 RNAFDG 264
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 40/236 (16%)
Query: 26 ESLFLAHNELVGKVPGK-LGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV 84
+ +FL H + VP S L L +H N L+G ++F L+ LE+L + N +
Sbjct: 34 QRIFL-HGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQL 92
Query: 85 GQIPET----LGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLG 140
+ T LG L + G +L P L++L N LQ LP +
Sbjct: 93 RVVDPTTFRGLGHLHTLHLDRCGLQELG---PGLFRGLAALQYLYLQDNNLQ-ALPDNTF 148
Query: 141 FTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAV 200
L NL L + N+ IP ++P++ F G LH L +++
Sbjct: 149 RDLGNLTHLFLHGNR----IP------------SVPEHAFRG-------LHSLDRLLLHQ 185
Query: 201 NHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNN 256
NH+ + L+ Y + NN MLP V ++ LR+ +N
Sbjct: 186 NHVARVHPHAFRDLGRLMTLY------LFANNL-SMLPAEVLVPLRSLQYLRLNDN 234
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 1 LRILWLDNNTYGGQIPDNISHCV-NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNL 59
L+ L+L +N +PDN + NL LFL N + L L L +H N++
Sbjct: 130 LQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
Query: 60 SGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGAN 105
+ P +F +L L L AN E L L+ ++++ N
Sbjct: 189 ARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV 84
L+ L+L N L L L L +H N + +F L SL+RL N
Sbjct: 130 LQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVA 189
Query: 85 GQIPETLGELKRMRFIGFGANKLS 108
P +L R+ + AN LS
Sbjct: 190 RVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%)
Query: 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
SH +LE L LA NE+ L+ L+ LA+ N L F L+SL+++
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWL 354
Query: 79 AANQFVGQIPE 89
N + P
Sbjct: 355 HTNPWDCSCPR 365
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 8/176 (4%)
Query: 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSS-FGNLSSLERLSAAAN 81
V + L + + + LG +S TL +NL I L L+R
Sbjct: 75 VQMRRCMLPGHTPIASILDYLGIVSPT-TLIFESDNLGMNITRQHLDRLHGLKRFRFTTR 133
Query: 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LSSLSNFDFPVNQLQGGLPTDLG 140
+ L +++ + + AN E+PS +++ L +L + +F N+L+ +P +
Sbjct: 134 RLTHIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQ-MPRGIF 190
Query: 141 FTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWV 196
+P L++LN+ NQ ++L ++ + N + P ++ L + W+
Sbjct: 191 GKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR--WL 244
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 4 LWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEI 63
L L N G P+ +++ L L N++ L +L+TL ++ N +S +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 64 PSSFGNLSSLERLSAAANQF 83
P SF +L+SL L+ A+N F
Sbjct: 119 PGSFEHLNSLTSLNLASNPF 138
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 79 AANQFVGQIPETLG-ELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPT 137
+++ G++P + ELKR N+L+G P++ S + N+++ +
Sbjct: 45 SSDGLFGRLPHLVKLELKR--------NQLTGIEPNAFEGASHIQELQLGENKIKE-ISN 95
Query: 138 DLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGF 180
+ L L+ LN+ DNQ + +P S + ++L L + N F
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 143 LPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLEN-----LHKLQWVV 197
LP+L +L + NQ TG P + AS++ L + +N K+ + N LH+L+ +
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN----KIKEISNKMFLGLHQLKTLN 108
Query: 198 IAVNHLGNGEKDDLEFVNSLVN 219
+ N + E +NSL +
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTS 130
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 18 NISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLS 77
++ CVNL++L L N + SL L L + +N LS S F LSSL L+
Sbjct: 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130
Query: 78 AAANQFVGQIPETLGE 93
N + +TLGE
Sbjct: 131 LLGNPY-----KTLGE 141
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 18 NISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLS 77
++ CVNL++L L N + SL L L + +N LS S F LSSL L+
Sbjct: 45 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 104
Query: 78 AAANQFVGQIPETLGE 93
N + +TLGE
Sbjct: 105 LLGNPY-----KTLGE 115
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 22/114 (19%)
Query: 10 TYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGN 69
TY G ++ C NL+ L L + + SL L L + N+LS S FG
Sbjct: 39 TYIGH--GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96
Query: 70 LSSLERLSAAANQF-------------------VGQIPETLGELKRMRFIGFGA 104
LSSL+ L+ N + +G + ET E++R+ F G +
Sbjct: 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV-ETFSEIRRIDFAGLTS 149
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 22/114 (19%)
Query: 10 TYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGN 69
TY G ++ C NL+ L L + + SL L L + N+LS S FG
Sbjct: 65 TYIGH--GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 122
Query: 70 LSSLERLSAAANQF-------------------VGQIPETLGELKRMRFIGFGA 104
LSSL+ L+ N + +G + ET E++R+ F G +
Sbjct: 123 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV-ETFSEIRRIDFAGLTS 175
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 14 QIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSL 73
+IP N+ + + L N + PG KLR + + +N +S P +F L SL
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 74 ERLSAAANQFVGQIPETLGE 93
L N+ + ++P++L E
Sbjct: 83 NSLVLYGNK-ITELPKSLFE 101
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 14 QIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSL 73
+IP N+ + + L N + PG KLR + + +N +S P +F L SL
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 74 ERLSAAANQFVGQIPETLGE 93
L N+ + ++P++L E
Sbjct: 83 NSLVLYGNK-ITELPKSLFE 101
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 143 LPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202
LP LE L +G+N+ T +S + L L++ N S VP L L KLQ + ++ NH
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 207
Query: 203 LGNGEKDDLEFVNSLVNAYGLEL 225
+ DL + L N LEL
Sbjct: 208 IS-----DLRALAGLKNLDVLEL 225
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 143 LPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202
LP LE L +G+N+ T +S + L L++ N S VP L L KLQ + ++ NH
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 207
Query: 203 LGNGEKDDLEFVNSLVNAYGLEL 225
+ DL + L N LEL
Sbjct: 208 IS-----DLRALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 143 LPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202
LP LE L +G+N+ T +S + L L++ N S VP L L KLQ + ++ NH
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 207
Query: 203 LGNGEKDDLEFVNSLVNAYGLEL 225
+ DL + L N LEL
Sbjct: 208 IS-----DLRALAGLKNLDVLEL 225
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 143 LPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202
LP LE L +G+N+ T +S + L L++ N S VP L L KLQ + ++ NH
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 184
Query: 203 LGNGEKDDLEFVNSLVNAYGLEL 225
+ DL + L N LEL
Sbjct: 185 IS-----DLRALAGLKNLDVLEL 202
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLS----GEIPSSFGNLSSLERLSAA 79
+L+ L+L HN L PG L+ LR L+++ N L+ ++P ++LE L +
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANLEILDIS 534
Query: 80 ANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDL 139
NQ + P+ L + NK E LS+ N+ N G P D+
Sbjct: 535 RNQLLAPNPDVFVSLS---VLDITHNKFICEC-----ELSTFINWLNHTNVTIAGPPADI 586
Query: 140 GFTLPN 145
P+
Sbjct: 587 YCVYPD 592
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 22 CVNLESLF---LAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
C ES+ L+ N L G V L K++ L +H+N + IP +L +L+ L+
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IPKDVTHLQALQELNV 480
Query: 79 AANQFVGQIPE-TLGELKRMRFIGFGANKLSGEIPSSIY 116
A+NQ + +P+ L +++I N P Y
Sbjct: 481 ASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLS 60
+++L L NN IP +++H L+ L +A N+L G L+ L+ + +H N
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Query: 61 GEIP 64
P
Sbjct: 511 CTCP 514
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 143 LPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202
LP LE L +G+N+ T +S + L L++ N S VP L L KLQ + ++ NH
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 187
Query: 203 LGNGEKDDLEFVNSLVNAYGLELL 226
+ DL + L N LEL
Sbjct: 188 IS-----DLRALAGLKNLDVLELF 206
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 143 LPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202
LP LE L +G+N+ T +S + L L++ N S VP L L KLQ + ++ NH
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 189
Query: 203 LGNGEKDDLEFVNSLVNAYGLELL 226
+ DL + L N LEL
Sbjct: 190 IS-----DLRALAGLKNLDVLELF 208
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 143 LPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202
LP LE L +G+N+ T +S + L L++ N S VP L L KLQ + ++ NH
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 189
Query: 203 LGNGEKDDLEFVNSLVNAYGLELL 226
+ DL + L N LEL
Sbjct: 190 IS-----DLRALAGLKNLDVLELF 208
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 143 LPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202
LP LE L +G+N+ T +S + L L++ N S VP L L KLQ + ++ NH
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LACLTKLQNLYLSKNH 184
Query: 203 LGNGEKDDLEFVNSLVNAYGLELL 226
+ DL + L N LEL
Sbjct: 185 IS-----DLRALCGLKNLDVLELF 203
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLS 60
L L+LDNN + D++ H NLE L + +N+L V LG LSKL L +H N ++
Sbjct: 108 LSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEIT 163
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 143 LPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202
LP LE L +G+N+ T +S + L L++ N S VP L L KLQ + ++ NH
Sbjct: 130 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186
Query: 203 LGNGEKDDLEFVNSLVNAYGLELL 226
+ DL + L N LEL
Sbjct: 187 IS-----DLRALAGLKNLDVLELF 205
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 33/94 (35%)
Query: 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ 82
L L L+ N++ G L+KL L +H N L F L+ L+ L+ NQ
Sbjct: 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111
Query: 83 FVGQIPETLGELKRMRFIGFGANKLSGEIPSSIY 116
L ++ I N P Y
Sbjct: 112 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
L+ L+L NEL PG L KL L++ +NNL+ E+P+ G L+ LE L
Sbjct: 127 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLDT 177
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
L+ L+L NEL PG L KL L++ +NNL+ E+P+ G L+ LE L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLDT 176
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
L+ L+L NEL PG L KL L++ +NNL+ E+P+ G L+ LE L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLDT 176
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
L+ L+L NEL PG L KL L++ +NNL+ E+P+ G L+ LE L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLDT 176
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSA 78
L+ L+L NEL PG L KL L++ +NNL+ E+P+ G L+ LE L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLDT 176
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 43 LGSLSKLRTLAVHHNNLSGEIPSS--------FGNLSSLERLSAAANQFVGQIP-ETLGE 93
L L KL L + HNNL+ + LS L L+ +N F +IP E +
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKD 558
Query: 94 LKRMRFIGFGANKLSGEIPSSIY-NLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVG 152
L ++ I G N L+ +P+S++ N SL + + N + G NL L++
Sbjct: 559 LFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617
Query: 153 DNQF--TGPIPASISNASNLMRLTIPQ 177
N F T A N N IP+
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPE 644
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 43 LGSLSKLRTLAVHHNNLSGEIPSS--------FGNLSSLERLSAAANQFVGQIP-ETLGE 93
L L KL L + HNNL+ + LS L L+ +N F +IP E +
Sbjct: 510 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKD 568
Query: 94 LKRMRFIGFGANKLSGEIPSSIY-NLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVG 152
L ++ I G N L+ +P+S++ N SL + + N + G NL L++
Sbjct: 569 LFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 627
Query: 153 DNQF--TGPIPASISNASNLMRLTIPQ 177
N F T A N N IP+
Sbjct: 628 FNPFDCTCESIAWFVNWINETHTNIPE 654
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 43 LGSLSKLRTLAVHHNNLSGEIPSS--------FGNLSSLERLSAAANQFVGQIP-ETLGE 93
L L KL L + HNNL+ + LS L L+ +N F +IP E +
Sbjct: 505 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKD 563
Query: 94 LKRMRFIGFGANKLSGEIPSSIY-NLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVG 152
L ++ I G N L+ +P+S++ N SL + + N + G NL L++
Sbjct: 564 LFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 622
Query: 153 DNQF--TGPIPASISNASNLMRLTIPQ 177
N F T A N N IP+
Sbjct: 623 FNPFDCTCESIAWFVNWINETHTNIPE 649
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSK 48
L L+L+NN G + + I NL +LFL+ N + P L SLSK
Sbjct: 289 LNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
Query: 67 FGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN-LSSLSNFD 125
F L+SL +L N+ +L + ++ N+L +P+ +++ L+ L
Sbjct: 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA 106
Query: 126 FPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVP 185
NQLQ LP + L L+ L + NQ ++L + + N + P
Sbjct: 107 LNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Query: 186 SLENLHKLQWV 196
+ L +W+
Sbjct: 166 GIRYLS--EWI 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,069,739
Number of Sequences: 62578
Number of extensions: 410613
Number of successful extensions: 1183
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 280
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)