Query 047624
Match_columns 353
No_of_seqs 158 out of 2453
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 13:02:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.9E-39 1.5E-43 314.9 24.3 350 1-353 166-559 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-38 2.6E-43 313.3 25.3 341 1-352 95-463 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.2E-34 2.6E-39 248.8 3.9 335 2-339 81-439 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.6E-33 9.9E-38 239.1 5.5 320 1-329 127-452 (873)
5 KOG0444 Cytoskeletal regulator 100.0 1E-30 2.2E-35 226.9 -4.2 333 2-352 10-373 (1255)
6 KOG0472 Leucine-rich repeat pr 99.9 2E-31 4.3E-36 219.4 -11.0 335 5-353 120-540 (565)
7 KOG0444 Cytoskeletal regulator 99.9 9.7E-29 2.1E-33 214.7 -3.2 318 1-333 57-379 (1255)
8 PLN03210 Resistant to P. syrin 99.9 2.6E-24 5.6E-29 212.8 24.8 323 15-352 580-904 (1153)
9 PLN03210 Resistant to P. syrin 99.9 1.7E-22 3.7E-27 200.0 22.9 316 16-352 551-880 (1153)
10 KOG0618 Serine/threonine phosp 99.9 2.3E-26 4.9E-31 207.7 -4.3 336 1-352 47-487 (1081)
11 KOG0472 Leucine-rich repeat pr 99.9 1.6E-27 3.5E-32 196.6 -10.9 331 2-353 48-470 (565)
12 KOG0618 Serine/threonine phosp 99.9 2.1E-25 4.6E-30 201.5 -6.8 336 3-353 25-464 (1081)
13 PRK15387 E3 ubiquitin-protein 99.8 2.4E-20 5.1E-25 173.0 16.1 261 3-336 205-465 (788)
14 PRK15387 E3 ubiquitin-protein 99.8 3.3E-20 7E-25 172.0 15.7 256 48-353 202-457 (788)
15 KOG4237 Extracellular matrix p 99.8 9E-22 1.9E-26 162.4 -2.7 248 3-258 71-358 (498)
16 KOG4237 Extracellular matrix p 99.8 1.1E-20 2.5E-25 156.0 -3.1 286 24-329 68-359 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 4.2E-18 9.2E-23 158.9 13.0 246 48-329 179-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 2.2E-19 4.8E-24 155.4 3.3 276 52-353 3-319 (319)
19 cd00116 LRR_RI Leucine-rich re 99.8 1.3E-19 2.8E-24 156.9 1.4 255 3-283 2-291 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 2.4E-17 5.2E-22 153.9 13.3 246 23-305 178-428 (754)
21 KOG0617 Ras suppressor protein 99.6 5.8E-18 1.3E-22 124.6 -3.9 163 20-188 30-193 (264)
22 KOG0617 Ras suppressor protein 99.6 4.8E-17 1E-21 119.8 -4.8 157 44-205 30-187 (264)
23 KOG1909 Ran GTPase-activating 99.4 3.3E-14 7.3E-19 116.4 -2.6 235 90-328 25-310 (382)
24 KOG1909 Ran GTPase-activating 99.3 1.4E-13 3.1E-18 112.7 -2.1 247 44-305 27-311 (382)
25 KOG3207 Beta-tubulin folding c 99.3 6.1E-13 1.3E-17 112.2 0.9 182 142-329 119-314 (505)
26 KOG4658 Apoptotic ATPase [Sign 99.3 7.3E-12 1.6E-16 119.4 7.0 274 2-283 526-807 (889)
27 KOG3207 Beta-tubulin folding c 99.2 1.2E-12 2.5E-17 110.5 -0.1 189 45-234 119-314 (505)
28 PF14580 LRR_9: Leucine-rich r 99.2 4.9E-11 1.1E-15 91.6 5.4 127 217-348 15-147 (175)
29 KOG0532 Leucine-rich repeat (L 99.1 4.3E-12 9.4E-17 110.6 -4.0 189 149-351 80-270 (722)
30 KOG0532 Leucine-rich repeat (L 99.1 2.8E-12 6.1E-17 111.7 -5.5 188 4-201 80-270 (722)
31 KOG1259 Nischarin, modulator o 99.1 2.7E-11 5.9E-16 97.7 0.4 126 168-305 284-412 (490)
32 PF13855 LRR_8: Leucine rich r 99.0 1.2E-10 2.5E-15 73.7 2.7 61 292-353 1-61 (61)
33 COG4886 Leucine-rich repeat (L 99.0 5.5E-10 1.2E-14 99.6 7.3 195 28-237 98-293 (394)
34 PF14580 LRR_9: Leucine-rich r 99.0 3.8E-10 8.2E-15 86.7 5.2 37 46-84 41-77 (175)
35 PLN03150 hypothetical protein; 99.0 1.1E-09 2.3E-14 102.4 8.7 108 24-131 419-527 (623)
36 COG4886 Leucine-rich repeat (L 99.0 6.6E-10 1.4E-14 99.0 6.7 199 123-336 97-297 (394)
37 KOG1259 Nischarin, modulator o 99.0 1.3E-10 2.9E-15 93.8 1.2 179 44-234 211-412 (490)
38 PLN03150 hypothetical protein; 99.0 1.3E-09 2.8E-14 101.8 7.8 105 247-352 419-526 (623)
39 KOG4658 Apoptotic ATPase [Sign 99.0 7.8E-10 1.7E-14 105.8 6.1 249 23-285 523-785 (889)
40 PF13855 LRR_8: Leucine rich r 98.9 2.5E-09 5.5E-14 67.5 4.5 59 24-82 2-60 (61)
41 KOG0531 Protein phosphatase 1, 98.7 2.1E-09 4.5E-14 96.1 -1.8 247 69-333 70-322 (414)
42 KOG2120 SCF ubiquitin ligase, 98.6 6.8E-10 1.5E-14 89.7 -4.8 176 145-326 186-373 (419)
43 KOG2120 SCF ubiquitin ligase, 98.6 2.8E-09 6.2E-14 86.2 -2.8 175 168-351 185-373 (419)
44 KOG0531 Protein phosphatase 1, 98.5 8E-09 1.7E-13 92.4 -1.9 241 92-352 69-316 (414)
45 KOG2982 Uncharacterized conser 98.5 3.6E-08 7.8E-13 79.9 1.8 85 21-106 69-157 (418)
46 COG5238 RNA1 Ran GTPase-activa 98.5 1E-07 2.2E-12 76.4 4.2 237 115-353 26-315 (388)
47 KOG2982 Uncharacterized conser 98.5 3.6E-08 7.7E-13 79.9 1.4 208 23-236 45-264 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.4 2E-07 4.4E-12 74.7 2.2 226 44-283 27-285 (388)
49 KOG1859 Leucine-rich repeat pr 98.3 1.5E-08 3.2E-13 91.6 -5.2 109 216-329 182-292 (1096)
50 KOG1859 Leucine-rich repeat pr 98.3 3.5E-08 7.6E-13 89.2 -3.8 124 73-203 166-291 (1096)
51 KOG3665 ZYG-1-like serine/thre 98.3 2E-07 4.2E-12 87.4 0.4 105 1-107 124-232 (699)
52 KOG4341 F-box protein containi 98.2 5.4E-08 1.2E-12 82.4 -3.6 291 48-342 139-454 (483)
53 KOG4341 F-box protein containi 98.2 3.7E-08 8.1E-13 83.4 -5.7 276 72-352 139-437 (483)
54 KOG4579 Leucine-rich repeat (L 98.2 9.6E-08 2.1E-12 68.4 -2.8 103 247-353 28-135 (177)
55 PRK15386 type III secretion pr 98.1 1.5E-05 3.2E-10 69.4 8.7 57 187-256 48-104 (426)
56 PF12799 LRR_4: Leucine Rich r 98.1 2.5E-06 5.5E-11 49.3 2.2 38 292-330 1-38 (44)
57 PF12799 LRR_4: Leucine Rich r 98.0 5.1E-06 1.1E-10 48.0 3.1 35 271-305 2-37 (44)
58 KOG4579 Leucine-rich repeat (L 98.0 4.5E-07 9.7E-12 65.1 -2.2 119 214-335 46-165 (177)
59 KOG3665 ZYG-1-like serine/thre 97.9 7.7E-06 1.7E-10 76.9 3.0 110 219-331 146-265 (699)
60 KOG1644 U2-associated snRNP A' 97.8 5.7E-05 1.2E-09 58.3 5.6 86 115-201 60-150 (233)
61 KOG1644 U2-associated snRNP A' 97.7 5.5E-05 1.2E-09 58.3 5.0 102 246-350 42-149 (233)
62 PRK15386 type III secretion pr 97.7 0.00025 5.4E-09 61.9 8.7 137 19-178 48-187 (426)
63 PF13306 LRR_5: Leucine rich r 97.6 0.0003 6.4E-09 51.9 7.4 107 17-128 6-112 (129)
64 KOG2739 Leucine-rich acidic nu 97.4 0.0001 2.2E-09 59.2 2.4 81 247-329 44-129 (260)
65 PF13306 LRR_5: Leucine rich r 97.2 0.0018 4E-08 47.6 7.4 115 1-121 14-128 (129)
66 KOG2123 Uncharacterized conser 97.2 1.4E-05 3E-10 64.7 -4.7 79 222-305 20-101 (388)
67 KOG1947 Leucine rich repeat pr 97.0 9E-05 2E-09 68.1 -1.3 110 94-203 187-307 (482)
68 KOG1947 Leucine rich repeat pr 97.0 0.00015 3.2E-09 66.7 -0.7 111 143-258 187-307 (482)
69 KOG2123 Uncharacterized conser 96.9 6.1E-05 1.3E-09 61.1 -3.4 98 247-347 20-123 (388)
70 KOG2739 Leucine-rich acidic nu 96.4 0.004 8.7E-08 50.3 3.9 61 143-203 64-128 (260)
71 KOG4308 LRR-containing protein 96.2 5.1E-06 1.1E-10 74.7 -15.1 324 3-329 91-473 (478)
72 PF00560 LRR_1: Leucine Rich R 96.1 0.0015 3.2E-08 31.3 0.1 19 318-337 2-20 (22)
73 PF00560 LRR_1: Leucine Rich R 95.3 0.012 2.6E-07 28.0 1.4 18 49-67 2-19 (22)
74 KOG3864 Uncharacterized conser 95.3 0.0023 4.9E-08 49.7 -1.8 82 248-329 103-189 (221)
75 PF13504 LRR_7: Leucine rich r 95.1 0.012 2.7E-07 26.0 1.1 14 316-329 1-14 (17)
76 KOG4308 LRR-containing protein 94.9 0.00014 3E-09 65.7 -10.8 165 164-330 111-304 (478)
77 KOG3864 Uncharacterized conser 93.0 0.009 2E-07 46.5 -2.6 87 263-350 94-185 (221)
78 smart00370 LRR Leucine-rich re 91.1 0.2 4.4E-06 24.8 1.9 18 316-334 2-19 (26)
79 smart00369 LRR_TYP Leucine-ric 91.1 0.2 4.4E-06 24.8 1.9 18 316-334 2-19 (26)
80 KOG0473 Leucine-rich repeat pr 88.5 0.01 2.3E-07 47.2 -6.1 88 18-108 37-124 (326)
81 PF13516 LRR_6: Leucine Rich r 88.2 0.12 2.7E-06 25.0 -0.3 8 273-280 5-12 (24)
82 KOG0473 Leucine-rich repeat pr 85.6 0.03 6.5E-07 44.7 -5.0 93 37-132 32-124 (326)
83 smart00364 LRR_BAC Leucine-ric 80.9 1.2 2.7E-05 22.1 1.4 18 316-334 2-19 (26)
84 KOG3763 mRNA export factor TAP 77.2 1.6 3.5E-05 39.8 2.0 15 270-284 270-284 (585)
85 smart00365 LRR_SD22 Leucine-ri 72.7 3.5 7.6E-05 20.5 1.7 14 316-329 2-15 (26)
86 smart00368 LRR_RI Leucine rich 72.5 3.5 7.6E-05 20.8 1.8 15 316-330 2-16 (28)
87 KOG3763 mRNA export factor TAP 69.2 2.3 5.1E-05 38.8 1.1 77 246-322 218-307 (585)
88 smart00367 LRR_CC Leucine-rich 63.6 5.4 0.00012 19.6 1.4 15 315-329 1-16 (26)
89 PF05725 FNIP: FNIP Repeat; I 31.2 85 0.0018 17.7 3.0 7 247-253 13-19 (44)
90 PF07723 LRR_2: Leucine Rich R 26.1 42 0.00091 16.5 1.0 11 248-258 2-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.9e-39 Score=314.94 Aligned_cols=350 Identities=39% Similarity=0.614 Sum_probs=246.6
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 67888888888888888888888888888888887777778888888888888888888777888888888888888888
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccc
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPI 160 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 160 (353)
|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|+.|++.+|.+....
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcC
Confidence 888777777788888888888888887767777777777888888887777655655554 5677777777777776666
Q ss_pred cccccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcchh------------------HHHhhhcccC
Q 047624 161 PASISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDL------------------EFVNSLVNAY 221 (353)
Q Consensus 161 ~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~l~~~~ 221 (353)
+..+..+++|+.|++++|.+.+..+. +..+++|+.++++.|.+.+.....+ ..+..+..++
T Consensus 325 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 66666777777777777766644333 5566666666666665543211110 1223445667
Q ss_pred CccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC-------------
Q 047624 222 GLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG------------- 288 (353)
Q Consensus 222 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~------------- 288 (353)
+|+.+++++|.+.+..|..+..++ .|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls 483 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLP-LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLS 483 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCC-CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECc
Confidence 777777777777766676666664 777777777777666666666666666666666665543332
Q ss_pred ------------CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 289 ------------RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 289 ------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+++| ++|+|++|++
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l 559 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL-SQLDLSQNQL 559 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC-CEEECCCCcc
Confidence 234556666666666666666666666667777777777766667666677777 6777776654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-38 Score=313.28 Aligned_cols=341 Identities=36% Similarity=0.600 Sum_probs=196.3
Q ss_pred CcEEEccCCCCccccCcccc-cCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecC
Q 047624 1 LRILWLDNNTYGGQIPDNIS-HCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAA 79 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (353)
|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|. ..+++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus 95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 172 (968)
T PLN00113 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG 172 (968)
T ss_pred CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECc
Confidence 34555555555544444332 555555555555554433332 234555555555555555556666666666666666
Q ss_pred CCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccc
Q 047624 80 ANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGP 159 (353)
Q Consensus 80 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 159 (353)
+|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+...
T Consensus 173 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccc
Confidence 6666555666666666666666666666655666666666666666666666555555444 566666666666666555
Q ss_pred ccccccCCCCccEEecCCCcceeeCC-CcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCc
Q 047624 160 IPASISNASNLMRLTIPQNGFSGKVP-SLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLP 238 (353)
Q Consensus 160 ~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 238 (353)
.|..+..+++|++|++++|.+.+..+ .+..+++|+.|+++.|.+.+ ..+..+..+++|+.|++++|.+.+..|
T Consensus 252 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG------EIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc------CCChhHcCCCCCcEEECCCCccCCcCC
Confidence 56666666666666666666554333 25556666666666665543 122334455666666666666666666
Q ss_pred hhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--------------------------CCCC
Q 047624 239 EAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--------------------------RNLT 292 (353)
Q Consensus 239 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--------------------------~~~~ 292 (353)
..+..++ +|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+. ..++
T Consensus 326 ~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 326 VALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred hhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 6666553 666666666666656666666666666666666666554432 2334
Q ss_pred CCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCC
Q 047624 293 SLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~ 352 (353)
+|+.|++++|.+.+.+|..+..++.|+.+++++|.+++.+|..+..+++| ++|++++|+
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~n~ 463 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL-QMLSLARNK 463 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC-cEEECcCce
Confidence 45555555555544445555555555555555555555555555555555 555555554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-34 Score=248.79 Aligned_cols=335 Identities=20% Similarity=0.234 Sum_probs=179.0
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
++||+++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|++.+|.|+....+.+..++.|+.|+++.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 35788888887666677778888888888888776 44554455566777777777776555556666677777777777
Q ss_pred cccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccc
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIP 161 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 161 (353)
.+...-..+|..-.++++|++++|.++......|..+.+|-.|.++.|.++ .+|...+++++.|+.|++..|.+...-.
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehh
Confidence 666433344544456666666666666545555555666666666666665 5555555456666666666555542223
Q ss_pred ccccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcchh------------------HHHhhhcccCC
Q 047624 162 ASISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDL------------------EFVNSLVNAYG 222 (353)
Q Consensus 162 ~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~l~~~~~ 222 (353)
..|..+++++.|.+..|++...... +..+.+++.|+++.|.+......-. -..+++.-++.
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 3344555555555555555443322 4444445555554444322110000 01112223344
Q ss_pred ccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC-----CCCCCCcEE
Q 047624 223 LELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG-----RNLTSLAIL 297 (353)
Q Consensus 223 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----~~~~~L~~L 297 (353)
|+.|+++.|.++..-+..+..+ ..|++|+++.|.+....-.+|.++++|++|||+.|.+...+.. ..+++|++|
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred ceeEeccccccccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 4444444444443333344444 2444455544444322223444445555555555544433222 334555555
Q ss_pred EeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccc
Q 047624 298 VFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGL 339 (353)
Q Consensus 298 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l 339 (353)
++.+|++.....++|.+++.|++|+|.+|.+-.+-|.+|.++
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 555555543333445555555555555555544444455444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=4.6e-33 Score=239.10 Aligned_cols=320 Identities=19% Similarity=0.210 Sum_probs=269.5
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
++.|+|.+|.|++.-.+.+..++.||+||++.|.+.++....|..-.++++|++.+|.|+..-...|..+.+|.+|.++.
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 46788888888877778888889999999999988877777788778999999999999866677899999999999999
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccc
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPI 160 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 160 (353)
|.++...+..|.++++|+.|++.+|.+.......|+.+++|+.|.+..|++. .+....+..+.++++|++.-|.++..-
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhh
Confidence 9999777788889999999999999998554667899999999999999998 444444448999999999999998777
Q ss_pred cccccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCch
Q 047624 161 PASISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPE 239 (353)
Q Consensus 161 ~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 239 (353)
..++..+.+|+.|+++.|.+..+... ...+++|++|+++.|.++.... .++..+..|++|.++.|.+...--.
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~------~sf~~L~~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE------GSFRVLSQLEELNLSHNSIDHLAEG 359 (873)
T ss_pred cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh------hHHHHHHHhhhhcccccchHHHHhh
Confidence 88999999999999999999876554 6778999999999999876443 3455567789999999998755555
Q ss_pred hHhhhcccCcEEEecCccccC---CCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhc
Q 047624 240 AVGNLSTRIRILRVGNNQLFG---NIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGK 314 (353)
Q Consensus 240 ~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~ 314 (353)
.+..+ ++|++|++..|.++. .....+.++++|+.|++.||++...... ..++.||.|++.+|.|...-+.+|..
T Consensus 360 af~~l-ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 360 AFVGL-SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred HHHHh-hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 66666 599999999998763 3456788999999999999999855432 78899999999999999888999999
Q ss_pred CCCCcEEecCCCcCC
Q 047624 315 CQNLILLDLSNNNLS 329 (353)
Q Consensus 315 ~~~L~~l~l~~n~~~ 329 (353)
+ .|++|.+..-.|.
T Consensus 439 m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 439 M-ELKELVMNSSSFL 452 (873)
T ss_pred c-hhhhhhhcccceE
Confidence 9 9999988765444
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1e-30 Score=226.93 Aligned_cols=333 Identities=26% Similarity=0.411 Sum_probs=240.3
Q ss_pred cEEEccCCCCc-cccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 2 RILWLDNNTYG-GQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 2 ~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
|-.|+++|.++ +.+|..+..|..++-|.+....+. .+|+.++.+.+|++|.+.+|++. .+...+..++.|+.+.+..
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhc
Confidence 45789999998 668888888888888888887776 56777888888888888888776 5556677777888888777
Q ss_pred Cccc-ccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccc
Q 047624 81 NQFV-GQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGP 159 (353)
Q Consensus 81 ~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 159 (353)
|.+. .-+|..+-++..|..+++++|++. ..|..+..-+++-.|++++|+|. .+|..++.++.-|-.|++++|.+. .
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~ 164 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-M 164 (1255)
T ss_pred cccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-h
Confidence 7663 235666777777888888888877 67777777777777778877776 677666656666777777777765 5
Q ss_pred ccccccCCCCccEEecCCCccee--------------------------eCCCcccccCccEEEEeeccCCCCCcchhHH
Q 047624 160 IPASISNASNLMRLTIPQNGFSG--------------------------KVPSLENLHKLQWVVIAVNHLGNGEKDDLEF 213 (353)
Q Consensus 160 ~~~~l~~~~~L~~L~l~~~~~~~--------------------------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 213 (353)
+|+.+..+..|++|.+++|++.- .+.++..+.+|..++++.|.+. ..
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-------~v 237 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-------IV 237 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-------cc
Confidence 66666666677777777765432 2222344444455555554443 23
Q ss_pred HhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceee--eecCC-CC
Q 047624 214 VNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFT--GRIPG-RN 290 (353)
Q Consensus 214 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~-~~ 290 (353)
+..+...++|+.|++++|.++ .+......+ .+|++|+++.|+++ .+|.++.++++|+.|++.+|++. |.+.. +.
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W-~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEW-ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHH-hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 445556667777777777766 333333334 37788888888877 78888888888888888888765 22221 56
Q ss_pred CCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCC
Q 047624 291 LTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~ 352 (353)
+.+|+.+...+|.+. ..|++++.|.+|+.|.|+.|++. .+|+++--++.+ +.||+.+|+
T Consensus 315 L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l-~vLDlreNp 373 (1255)
T KOG0444|consen 315 LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL-KVLDLRENP 373 (1255)
T ss_pred hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCc-ceeeccCCc
Confidence 677888888777766 67889999999999999999988 789999889999 899998886
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=2e-31 Score=219.45 Aligned_cols=335 Identities=27% Similarity=0.402 Sum_probs=191.8
Q ss_pred EccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCccc
Q 047624 5 WLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV 84 (353)
Q Consensus 5 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 84 (353)
+.++|++. .+++.+..+-.++.++-.+|++. ..|..+.++.++..+++.++++. .+|+..-+|..|+.++...|.+.
T Consensus 120 ~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 120 DCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE 196 (565)
T ss_pred hcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh
Confidence 33333333 33333444444444444444333 22233333344444444444433 22222223444444444444443
Q ss_pred ccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccc
Q 047624 85 GQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASI 164 (353)
Q Consensus 85 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 164 (353)
.+|..++.+.+|+.|++.+|.+. .+| .|..+..|.+++++.|.+. .+|....+.++++..|++++|+++ ..|..+
T Consensus 197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~ 271 (565)
T KOG0472|consen 197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI 271 (565)
T ss_pred -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH
Confidence 34444555555555555555554 333 3455555555555555554 555555556777888888888876 577777
Q ss_pred cCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcc-----------------------------------
Q 047624 165 SNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKD----------------------------------- 209 (353)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~----------------------------------- 209 (353)
..+.+|.+|++++|.++..++.++++ .|+.+.+.+|.+.....+
T Consensus 272 clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 77778888888888888877777777 777777776643110000
Q ss_pred -hhHHHhhhcccCC--------------------------ccEEEccCCcC-----------------------CccCch
Q 047624 210 -DLEFVNSLVNAYG--------------------------LELLEINTNNF-----------------------GGMLPE 239 (353)
Q Consensus 210 -~~~~~~~l~~~~~--------------------------L~~L~l~~~~~-----------------------~~~~~~ 239 (353)
.+.++ ......+ ...+++++|++ .+..|.
T Consensus 351 ~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~ 429 (565)
T KOG0472|consen 351 PSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL 429 (565)
T ss_pred CCCccc-chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH
Confidence 00000 0000111 22333333322 122334
Q ss_pred hHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC-CCCCCCcEEEeecccccccCChhhhcCCCC
Q 047624 240 AVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG-RNLTSLAILVFVENMLEGSIPSSLGKCQNL 318 (353)
Q Consensus 240 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 318 (353)
.+..+ ++|..|++++|-+- .+|..++.+..|++++++.|.|...+.. ..+..++.+..++|++...-+..+.++.+|
T Consensus 430 ~l~~l-~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 430 ELSQL-QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHHhh-hcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 44444 37788888877765 6777777777888888888876533322 233455555566677775555668889999
Q ss_pred cEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 319 ILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 319 ~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+.||+.+|.+. .+|..+..+.++ ++|++.+|+|
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL-~hLeL~gNpf 540 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNL-RHLELDGNPF 540 (565)
T ss_pred ceeccCCCchh-hCChhhccccce-eEEEecCCcc
Confidence 99999999998 788889999999 9999999986
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=9.7e-29 Score=214.74 Aligned_cols=318 Identities=24% Similarity=0.333 Sum_probs=255.4
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCccc-ccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELV-GKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAA 79 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (353)
|++|.+.+|++.+ +-..+..++.||.+.+..|++. .-+|..+.++..|+.||+++|++. ..|..+....++-+|+++
T Consensus 57 LEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS 134 (1255)
T KOG0444|consen 57 LEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLS 134 (1255)
T ss_pred hhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcc
Confidence 4566677777663 2333556777777777777653 235666777888888888888887 788888888888889999
Q ss_pred CCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccc-c
Q 047624 80 ANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFT-G 158 (353)
Q Consensus 80 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~ 158 (353)
+|.+....-..+.++..|-.|++++|.+. .+|..+..+..|+.|.+++|++.......+. .+.+|+.|++++.+-+ .
T Consensus 135 ~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 135 YNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred cCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhh
Confidence 88887544445678888889999999888 7888888899999999999987633333333 4677888888887543 4
Q ss_pred cccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCc
Q 047624 159 PIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLP 238 (353)
Q Consensus 159 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 238 (353)
.+|.++..+.+|..++++.|.+..++..+.++++|+.|.++.|.++.. ........++++|+++.|.++ .+|
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL-------~~~~~~W~~lEtLNlSrNQLt-~LP 284 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL-------NMTEGEWENLETLNLSRNQLT-VLP 284 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee-------eccHHHHhhhhhhccccchhc-cch
Confidence 688888899999999999999998888899999999999999988642 233344567899999999998 789
Q ss_pred hhHhhhcccCcEEEecCcccc-CCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhcC
Q 047624 239 EAVGNLSTRIRILRVGNNQLF-GNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKC 315 (353)
Q Consensus 239 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~ 315 (353)
..++.++ .|+.|.+.+|++. +-+|..++++..|+++..++|.+. ..|. ..+++|++|.+++|.+. .+|+++.-+
T Consensus 285 ~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL 361 (1255)
T KOG0444|consen 285 DAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLL 361 (1255)
T ss_pred HHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhc
Confidence 9999996 9999999999875 568999999999999999999886 4444 56789999999999987 699999999
Q ss_pred CCCcEEecCCCcCCCCCC
Q 047624 316 QNLILLDLSNNNLSGTIP 333 (353)
Q Consensus 316 ~~L~~l~l~~n~~~~~~~ 333 (353)
+.|+.||+++|+-.-..|
T Consensus 362 ~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 362 PDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred CCcceeeccCCcCccCCC
Confidence 999999999997773444
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=2.6e-24 Score=212.76 Aligned_cols=323 Identities=20% Similarity=0.242 Sum_probs=215.5
Q ss_pred cCcccccCC-CCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhc
Q 047624 15 IPDNISHCV-NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGE 93 (353)
Q Consensus 15 ~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 93 (353)
+|..+..++ +|+.|.+.++.+. ..|..| ...+|++|++.++.+. .++..+..+++|+.++++++.....+|. +..
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-ccc
Confidence 344444443 3666666555544 334333 3466777777776665 5566666677777777776654434443 566
Q ss_pred cccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEE
Q 047624 94 LKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRL 173 (353)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 173 (353)
+++|+.|++++|.....+|..+..+++|+.|++++|.....+|... .+++|+.|++++|.....+|.. .++|+.|
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L 730 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWL 730 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence 6777777777766555666667777777777777765444555543 4667777777776543333321 3567777
Q ss_pred ecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHH-HhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEE
Q 047624 174 TIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEF-VNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILR 252 (353)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 252 (353)
+++++.+...+..+ .+++|+.|.+..+............ ......+++|+.|++++|.....+|.++..++ +|+.|+
T Consensus 731 ~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~ 808 (1153)
T PLN03210 731 DLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH-KLEHLE 808 (1153)
T ss_pred ecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCC-CCCEEE
Confidence 77777665543322 4566666666543211100000000 01122357899999999987778888888885 999999
Q ss_pred ecCccccCCCchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCC
Q 047624 253 VGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTI 332 (353)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 332 (353)
+++|...+.+|..+ ++++|+.|++++|.....++ ....+++.|++++|.+. .+|..+..+++|+.|++++|+....+
T Consensus 809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p-~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFP-DISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCCCCCcCeeCCCC-CccccCEEECCCCCcccccc-ccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence 99986555677655 68999999999987554444 34578999999999988 68999999999999999998666678
Q ss_pred CcccccccccceEEecCCCC
Q 047624 333 PTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 333 ~~~~~~l~~l~~~l~l~~~~ 352 (353)
|..+..++.| +.+++++|.
T Consensus 886 ~~~~~~L~~L-~~L~l~~C~ 904 (1153)
T PLN03210 886 SLNISKLKHL-ETVDFSDCG 904 (1153)
T ss_pred CcccccccCC-CeeecCCCc
Confidence 9888999999 899999985
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.7e-22 Score=199.96 Aligned_cols=316 Identities=22% Similarity=0.266 Sum_probs=236.0
Q ss_pred CcccccCCCCcEEEcccCcc------cccCCcccCCCC-CccEEEecCCccCCccCccccCCCcccEeecCCCcccccCh
Q 047624 16 PDNISHCVNLESLFLAHNEL------VGKVPGKLGSLS-KLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIP 88 (353)
Q Consensus 16 ~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 88 (353)
+..|..|++|+.|.+..+.. ....|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.++.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 45688899999998865432 123455566654 6999999988876 777777 4689999999999887 567
Q ss_pred hhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCC
Q 047624 89 ETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNAS 168 (353)
Q Consensus 89 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 168 (353)
..+..+++|+.++++++.....+| .+..+++|+.|++++|.....+|..+. .+++|+.|++++|.....+|..+ .++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 778889999999998876554565 377788999999998876557777665 68899999999886555666544 688
Q ss_pred CccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCc------cCchhHh
Q 047624 169 NLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGG------MLPEAVG 242 (353)
Q Consensus 169 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~~~ 242 (353)
+|+.|++++|......+. ...+++.|.++.+.+...+ .. ..+++|+.|.+..+.... ..+....
T Consensus 705 sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~lP-------~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEEFP-------SN-LRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred CCCEEeCCCCCCcccccc--ccCCcCeeecCCCcccccc-------cc-ccccccccccccccchhhccccccccchhhh
Confidence 999999999865443332 2467888888887764322 11 245677777776543210 1112223
Q ss_pred hhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecC-CCCCCCCcEEEeecccccccCChhhhcCCCCcEE
Q 047624 243 NLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIP-GRNLTSLAILVFVENMLEGSIPSSLGKCQNLILL 321 (353)
Q Consensus 243 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 321 (353)
..+++|+.|++++|.....+|..+.++++|+.|++++|...+..| ...+++|+.|++++|.....+|.. .++|+.|
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L 851 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDL 851 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEe
Confidence 344699999999998777899999999999999999986444444 356899999999998766556543 3689999
Q ss_pred ecCCCcCCCCCCcccccccccceEEecCCCC
Q 047624 322 DLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 322 ~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~ 352 (353)
++++|.++ .+|..+..+++| ++|++++|+
T Consensus 852 ~Ls~n~i~-~iP~si~~l~~L-~~L~L~~C~ 880 (1153)
T PLN03210 852 NLSRTGIE-EVPWWIEKFSNL-SFLDMNGCN 880 (1153)
T ss_pred ECCCCCCc-cChHHHhcCCCC-CEEECCCCC
Confidence 99999998 789999999999 899999974
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=2.3e-26 Score=207.69 Aligned_cols=336 Identities=30% Similarity=0.371 Sum_probs=220.6
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
|+.||+++|.+. .+|..+..+++|+.|+++.|.+. ..|....++.+|+++.+.++... ..|..+..+.+|++|+++.
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence 578999999987 68888888999999999998876 45677888999999999998876 8899999999999999998
Q ss_pred CcccccChhhhhccccc-------------------cE----------------------EEeCCCcCCCCCchhhcCC-
Q 047624 81 NQFVGQIPETLGELKRM-------------------RF----------------------IGFGANKLSGEIPSSIYNL- 118 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L-------------------~~----------------------L~l~~~~~~~~~~~~l~~l- 118 (353)
|.+. ..|..+..+..+ +. +++..|.+. . ..+..+
T Consensus 124 N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~--~dls~~~ 199 (1081)
T KOG0618|consen 124 NHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-V--LDLSNLA 199 (1081)
T ss_pred hccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh-h--hhhhhcc
Confidence 8776 233222221111 11 333333322 0 001111
Q ss_pred -------------------CCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCc
Q 047624 119 -------------------SSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNG 179 (353)
Q Consensus 119 -------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 179 (353)
++++.|+.+.|.+. ...... ...+++.++++.+.++ .+|.++..+.+|+.+...+|.
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLT-TLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcce-eecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchh
Confidence 23333333444333 111111 2345667777766665 456666666777766666665
Q ss_pred ce-----------------------eeCCCcccccCccEEEEeeccCCCCCcchhHHHhh----h---------------
Q 047624 180 FS-----------------------GKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNS----L--------------- 217 (353)
Q Consensus 180 ~~-----------------------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~----l--------------- 217 (353)
+. -+++......++++|++..|.+...+...+..... +
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 53 33334555777888888887776655432221111 0
Q ss_pred cccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCc-hhhcCCCCCcEEecCCceeeeecCC-CCCCCCc
Q 047624 218 VNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIP-SELRNLVNLELLELGDNQFTGRIPG-RNLTSLA 295 (353)
Q Consensus 218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~L~ 295 (353)
...+.|+.|.+.+|.+++.....+..+. +||.|++++|.+. .+| ..+.++..|+.|+++||+++..... ..+++|+
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFK-HLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLH 433 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhcccc-ceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhH
Confidence 0124456666667777766666666664 8888888888776 444 4566788888888888887754322 6678888
Q ss_pred EEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCC
Q 047624 296 ILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 296 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~ 352 (353)
+|...+|++. ..| .+..++.|+.+|++.|+++...-..-...|+| ++||+++|.
T Consensus 434 tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L-kyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL-KYLDLSGNT 487 (1081)
T ss_pred HHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCccc-ceeeccCCc
Confidence 8888888887 566 78888999999999999886533333455899 899999884
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.6e-27 Score=196.58 Aligned_cols=331 Identities=27% Similarity=0.425 Sum_probs=244.7
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
..+++++|.+. ...+++.++..+..|+++.+.+. ..|.+++.+..++.++.++++++ .+|+.+..+.+|..++++.+
T Consensus 48 ~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 48 QKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccc
Confidence 34667777777 45566778888888888888776 45666777888888888888877 78888888888888888888
Q ss_pred cccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccc
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIP 161 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 161 (353)
.+. ..++.++.+..++.+...+|++. ..|..+..+.++..+++.+|.+. ..+.... .++.|++++.-.|.+. .+|
T Consensus 125 ~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 125 ELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred cee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCC
Confidence 877 56777888888888888888887 67777777788888888888877 5555544 4788888888777665 678
Q ss_pred ccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhH
Q 047624 162 ASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAV 241 (353)
Q Consensus 162 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 241 (353)
..++.+.+|..|++..|++...+ .+..|..|+.++++.|.+.-.+ .+...+++.+.+||++.|++. ..|..+
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lp------ae~~~~L~~l~vLDLRdNklk-e~Pde~ 271 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLP------AEHLKHLNSLLVLDLRDNKLK-EVPDEI 271 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhH------HHHhcccccceeeeccccccc-cCchHH
Confidence 88888888888888888887655 7888888888888887764211 123457788888888888887 667777
Q ss_pred hhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeec----CC-----------------------------
Q 047624 242 GNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRI----PG----------------------------- 288 (353)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~----~~----------------------------- 288 (353)
+-+ .+|+.|++++|.++ ..|..++++ +|+.|-+.||++...- ..
T Consensus 272 clL-rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 272 CLL-RSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred HHh-hhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 766 47888899988888 677778888 8888888888764110 00
Q ss_pred ------------------------------------CCCCCCcEEEeeccccc-----------------------ccCC
Q 047624 289 ------------------------------------RNLTSLAILVFVENMLE-----------------------GSIP 309 (353)
Q Consensus 289 ------------------------------------~~~~~L~~L~l~~~~~~-----------------------~~~~ 309 (353)
..-.-....++++|++. +..|
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~ 428 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVP 428 (565)
T ss_pred CCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccch
Confidence 00001233344444433 2345
Q ss_pred hhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 310 SSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 310 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
..++.+++|..|++++|.+- .+|.++.++-.+ +.||||.|++
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L-q~LnlS~NrF 470 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL-QTLNLSFNRF 470 (565)
T ss_pred HHHHhhhcceeeecccchhh-hcchhhhhhhhh-heeccccccc
Confidence 56677888899999988888 788888888888 7999988764
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=2.1e-25 Score=201.51 Aligned_cols=336 Identities=26% Similarity=0.324 Sum_probs=227.7
Q ss_pred EEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCc
Q 047624 3 ILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ 82 (353)
Q Consensus 3 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 82 (353)
.|++..|-+-...-+.+...-+|+.|+++++.+. ..|..+..+.+|+.|.++.|.+. .+|.+...+.+|+++.+.++.
T Consensus 25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~ 102 (1081)
T KOG0618|consen 25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNR 102 (1081)
T ss_pred hhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccch
Confidence 3455555544322233344555888888888775 56677778888888888888877 777888888888888888887
Q ss_pred ccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCC-------------------CCE--------------------
Q 047624 83 FVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSS-------------------LSN-------------------- 123 (353)
Q Consensus 83 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-------------------L~~-------------------- 123 (353)
.. ..|..+..+++|+.|+++.|.+. ..|..+..+.. ++.
T Consensus 103 l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~ 180 (1081)
T KOG0618|consen 103 LQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLT 180 (1081)
T ss_pred hh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhh
Confidence 76 67888888888999998888775 33322221111 222
Q ss_pred --EEcCCCCCCCCCCccccCCCCCCCEEe--------------------ccCccccccccccccCCCCccEEecCCCcce
Q 047624 124 --FDFPVNQLQGGLPTDLGFTLPNLERLN--------------------VGDNQFTGPIPASISNASNLMRLTIPQNGFS 181 (353)
Q Consensus 124 --L~l~~~~~~~~~~~~~~~~~~~L~~L~--------------------l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 181 (353)
+++..|.+. . .....++.|+.+. ...|.+.... .-....+++.++++.|.++
T Consensus 181 ~~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 181 HQLDLRYNEME-V---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLS 254 (1081)
T ss_pred eeeecccchhh-h---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceeeecchhhhh
Confidence 333333221 0 0000122222222 2222222110 1112346788888888888
Q ss_pred eeCCCcccccCccEEEEeeccCCCCCcchh----------------HHHhhhcccCCccEEEccCCcCCccCchhHhhh-
Q 047624 182 GKVPSLENLHKLQWVVIAVNHLGNGEKDDL----------------EFVNSLVNAYGLELLEINTNNFGGMLPEAVGNL- 244 (353)
Q Consensus 182 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~----------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~- 244 (353)
..+..+..+++++.+....|.+.....+-. ..+......+.|++|++..|.+.. +|..+...
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~ 333 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVL 333 (1081)
T ss_pred cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc-cchHHHhhh
Confidence 887668889999999999887743222211 011122346789999999887763 22221111
Q ss_pred ------------------------cccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEE
Q 047624 245 ------------------------STRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILV 298 (353)
Q Consensus 245 ------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~ 298 (353)
.+.|+.|++.+|.+++.....+.++++|+.|++++|++...... ..++.|+.|+
T Consensus 334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN 413 (1081)
T ss_pred hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHh
Confidence 14678888889998877767888999999999999988733322 6778999999
Q ss_pred eecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 299 FVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 299 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+++|+++ .+|+.+-.++.|+.|...+|.+. +.| .+.+++.| +.+|+|-|++
T Consensus 414 LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL-~~lDlS~N~L 464 (1081)
T KOG0618|consen 414 LSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL-KVLDLSCNNL 464 (1081)
T ss_pred cccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc-eEEecccchh
Confidence 9999998 68899999999999999999999 889 88999999 8999999875
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=2.4e-20 Score=172.95 Aligned_cols=261 Identities=25% Similarity=0.334 Sum_probs=142.5
Q ss_pred EEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCc
Q 047624 3 ILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ 82 (353)
Q Consensus 3 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 82 (353)
.|+++++.++ .+|+.+. ++|+.|++.+|.+.. +|. ..++|++|++++|++. .+|.. .++|+.|++.+|.
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCc
Confidence 4556666555 3444332 356666666665553 222 2345666666666555 33332 2355555555555
Q ss_pred ccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccc
Q 047624 83 FVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPA 162 (353)
Q Consensus 83 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 162 (353)
+. .+|.. ...|+.|++++|.+. .+|.. +++|+.|++++|.+. .++.. ...|+.|++.+|.+. .+|.
T Consensus 274 L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~-~LP~ 339 (788)
T PRK15387 274 LT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLT-SLPT 339 (788)
T ss_pred hh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC----cccccccccccCccc-cccc
Confidence 54 22221 134555555555554 33321 244555555555554 23321 223445555555443 2222
Q ss_pred cccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHh
Q 047624 163 SISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVG 242 (353)
Q Consensus 163 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 242 (353)
. .++|+.|++++|.++..+.. .++++.|++++|.+. .+|.
T Consensus 340 l---p~~Lq~LdLS~N~Ls~LP~l---------------------------------p~~L~~L~Ls~N~L~-~LP~--- 379 (788)
T PRK15387 340 L---PSGLQELSVSDNQLASLPTL---------------------------------PSELYKLWAYNNRLT-SLPA--- 379 (788)
T ss_pred c---ccccceEecCCCccCCCCCC---------------------------------Ccccceehhhccccc-cCcc---
Confidence 0 12455555555544432211 123444555555544 2332
Q ss_pred hhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEe
Q 047624 243 NLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLD 322 (353)
Q Consensus 243 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 322 (353)
.+++|+.|++++|.++ .+|.. .++|+.|++++|.+.+. | ..+.+|+.|++++|++. .+|..+..+++|+.++
T Consensus 380 -l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~LssI-P-~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 380 -LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTSL-P-MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred -cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCCC-C-cchhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 2246778888887776 44432 35788888888887643 3 23457888888888887 6888888889999999
Q ss_pred cCCCcCCCCCCccc
Q 047624 323 LSNNNLSGTIPTEV 336 (353)
Q Consensus 323 l~~n~~~~~~~~~~ 336 (353)
+++|++++..|..+
T Consensus 452 Ls~N~Ls~~~~~~L 465 (788)
T PRK15387 452 LEGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCCchHHHHH
Confidence 99999987777655
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3.3e-20 Score=172.04 Aligned_cols=256 Identities=24% Similarity=0.313 Sum_probs=190.5
Q ss_pred CccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcC
Q 047624 48 KLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFP 127 (353)
Q Consensus 48 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 127 (353)
.-..|+++++.+. .+|..+. ++|+.|.+.+|.++ .+|. .+++|+.|++++|.++ .+|.. .++|+.|++.
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 4567788888777 6777664 47888888888777 3443 2477888888888887 44532 3578888888
Q ss_pred CCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCC
Q 047624 128 VNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGE 207 (353)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 207 (353)
+|.+. .++. .+..|+.|++.+|.+. .+|. .+++|+.|++++|.+..++.. ...|+.|.+++|.+...+
T Consensus 271 ~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 271 SNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred CCchh-hhhh----chhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCC---cccccccccccCcccccc
Confidence 88776 4443 2356888888888876 3443 246788889988888765432 345777888888775432
Q ss_pred cchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecC
Q 047624 208 KDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIP 287 (353)
Q Consensus 208 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 287 (353)
. -..+|+.|++++|.+.. +|. .+++|+.|++++|.+. .+|.. ..+|+.|++++|.+.+...
T Consensus 339 ~----------lp~~Lq~LdLS~N~Ls~-LP~----lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~ 399 (788)
T PRK15387 339 T----------LPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPV 399 (788)
T ss_pred c----------cccccceEecCCCccCC-CCC----CCcccceehhhccccc-cCccc---ccccceEEecCCcccCCCC
Confidence 1 12478999999998873 443 3468999999999987 56653 3579999999999985432
Q ss_pred CCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 288 GRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
.+++|+.|++++|++. .+|... ..|+.|++++|+++ .+|+.+..++++ +.|+|++|+|
T Consensus 400 --l~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L-~~LdLs~N~L 457 (788)
T PRK15387 400 --LPSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPL 457 (788)
T ss_pred --cccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCC-CeEECCCCCC
Confidence 4579999999999998 467543 47889999999999 789999999999 8999999986
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=9e-22 Score=162.42 Aligned_cols=248 Identities=21% Similarity=0.267 Sum_probs=179.5
Q ss_pred EEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecC-CccCCccCccccCCCcccEeecCCC
Q 047624 3 ILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHH-NNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 3 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
.++|..|+|+...+..|..+++||.|+++.|.++.+.|++|.++++|..|-+.+ |+|+..--..|+.+..|+.|.+..|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 578899999988888999999999999999999988999999999988887665 8888444467889999999999888
Q ss_pred cccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCC------------CCCccccCCCC-----
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQG------------GLPTDLGFTLP----- 144 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------~~~~~~~~~~~----- 144 (353)
.+.-...+.+..++++..|.+.+|.+...-...+..+..++.+.+..|.+.. ..+..+. .+.
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets-garc~~p~ 229 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS-GARCVSPY 229 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc-cceecchH
Confidence 8876677788899999999999988873333367777778887777665221 0000000 000
Q ss_pred -----------------CCCEE--ec-cCcccccccc-ccccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeecc
Q 047624 145 -----------------NLERL--NV-GDNQFTGPIP-ASISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNH 202 (353)
Q Consensus 145 -----------------~L~~L--~l-~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~ 202 (353)
.++.+ .+ +.+......| ..+..+|+|++|++++|.++.+.+. +.....++.|.+..|.
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 01111 01 1111111111 2366788999999999998876654 7888888988888887
Q ss_pred CCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccc
Q 047624 203 LGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQL 258 (353)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 258 (353)
+.. .....+.....|++|++.+|+++...|.+|.... .|.+|++-.|.+
T Consensus 310 l~~------v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~-~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 310 LEF------VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF-SLSTLNLLSNPF 358 (498)
T ss_pred HHH------HHHHhhhccccceeeeecCCeeEEEecccccccc-eeeeeehccCcc
Confidence 643 2334677788889999999998888888887775 888888877765
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-20 Score=155.96 Aligned_cols=286 Identities=20% Similarity=0.230 Sum_probs=168.9
Q ss_pred CCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC-CcccccChhhhhccccccEEEe
Q 047624 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA-NQFVGQIPETLGELKRMRFIGF 102 (353)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l 102 (353)
....+++..|.+..+.+.+|+.+++||.||+++|.|+..-|++|..++.|.+|.+.+ |+++......|..+..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456677888888777778888888888888888888777788888888887777777 7777555566778888888888
Q ss_pred CCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCccee
Q 047624 103 GANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSG 182 (353)
Q Consensus 103 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 182 (353)
..|.+.......+..++++..|.+..|.+. .++...+..+.+++++++..|.+. ...++|.+....-.. .+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~i-----cdCnL~wla~~~a~~-~ie- 219 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFI-----CDCNLPWLADDLAMN-PIE- 219 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccc-----cccccchhhhHHhhc-hhh-
Confidence 888887777777888888888888777765 555545556777777777666543 122233332211110 000
Q ss_pred eCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEE--EccCCc-CCccCchhHhhhcccCcEEEecCcccc
Q 047624 183 KVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELL--EINTNN-FGGMLPEAVGNLSTRIRILRVGNNQLF 259 (353)
Q Consensus 183 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L--~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~ 259 (353)
+++..-..-..+...+....... .+... ++.+ .+.... ..+..|...+.-.++|+++++++|+++
T Consensus 220 ----tsgarc~~p~rl~~~Ri~q~~a~--kf~c~------~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 220 ----TSGARCVSPYRLYYKRINQEDAR--KFLCS------LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred ----cccceecchHHHHHHHhcccchh--hhhhh------HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 00000000000111111110000 00001 1111 111111 222333333322247777777777777
Q ss_pred CCCchhhcCCCCCcEEecCCceeeee--cCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCC
Q 047624 260 GNIPSELRNLVNLELLELGDNQFTGR--IPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLS 329 (353)
Q Consensus 260 ~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 329 (353)
..-+.+|.+...+++|.|.+|++... .....++.|++|++++|+|+..-|.+|.....|..|.+-.|++-
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 66667777777777777777766522 22255667777777777776666666666667777776666664
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=4.2e-18 Score=158.91 Aligned_cols=246 Identities=22% Similarity=0.361 Sum_probs=125.1
Q ss_pred CccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcC
Q 047624 48 KLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFP 127 (353)
Q Consensus 48 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 127 (353)
+...|+++++.+. .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 3455666655554 4444332 35666666666555 3343332 35666666666655 3444332 356666666
Q ss_pred CCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCC
Q 047624 128 VNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGE 207 (353)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 207 (353)
+|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++..+..+ .++++.|+++.|.+...+
T Consensus 250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 250 INRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTALP 320 (754)
T ss_pred CCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCccccCC
Confidence 66655 4444332 35666666666555 3444332 35666666666555433222 134555555555443221
Q ss_pred cchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecC
Q 047624 208 KDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIP 287 (353)
Q Consensus 208 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 287 (353)
. .-.++|+.|++++|.++. +|..+ +++|+.|++++|.+. .+|..+ .++|++|++++|.+... |
T Consensus 321 ~---------~l~~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~L-P 383 (754)
T PRK15370 321 E---------TLPPGLKTLEAGENALTS-LPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNL-P 383 (754)
T ss_pred c---------cccccceeccccCCcccc-CChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCC-C
Confidence 1 011355666666665542 33322 246666666666665 444433 24666666666666532 2
Q ss_pred CCCCCCCcEEEeecccccccCChhh----hcCCCCcEEecCCCcCC
Q 047624 288 GRNLTSLAILVFVENMLEGSIPSSL----GKCQNLILLDLSNNNLS 329 (353)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~l~l~~n~~~ 329 (353)
......|+.|++++|++. .+|..+ ...+.+..+++.+|+++
T Consensus 384 ~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 ENLPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhHHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 223345666666666665 344333 22355666666666665
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=2.2e-19 Score=155.42 Aligned_cols=276 Identities=20% Similarity=0.269 Sum_probs=156.9
Q ss_pred EEecCCccC-CccCccccCCCcccEeecCCCccccc----ChhhhhccccccEEEeCCCcCCC------CCchhhcCCCC
Q 047624 52 LAVHHNNLS-GEIPSSFGNLSSLERLSAAANQFVGQ----IPETLGELKRMRFIGFGANKLSG------EIPSSIYNLSS 120 (353)
Q Consensus 52 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~l~~l~~ 120 (353)
|++.++.+. ......+..+.+|+++++.++.+... ++..+...+.++.+.++++.+.. .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 556555554 23444556666777777777776421 23334455667777776665541 12223444556
Q ss_pred CCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceee-----CCCcccc-cCcc
Q 047624 121 LSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGK-----VPSLENL-HKLQ 194 (353)
Q Consensus 121 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~-~~L~ 194 (353)
|++|+++++.+....+..+. .+.. . ++|++|++++|.+.+. ...+..+ ++++
T Consensus 83 L~~L~l~~~~~~~~~~~~~~-~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~ 140 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLE-SLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140 (319)
T ss_pred eeEEEccCCCCChhHHHHHH-HHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence 66666666555321111111 1111 1 2244444444444320 0112233 5555
Q ss_pred EEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCch----hHhhhcccCcEEEecCccccCC----Cchhh
Q 047624 195 WVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPE----AVGNLSTRIRILRVGNNQLFGN----IPSEL 266 (353)
Q Consensus 195 ~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~----~~~~~ 266 (353)
.++++.|.+.+... ..+...+..++.+++|++++|.+.+.... .+... ++|++|++++|.+.+. +...+
T Consensus 141 ~L~L~~n~l~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 141 KLVLGRNRLEGASC--EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred EEEcCCCcCCchHH--HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHh
Confidence 66665555543211 12334455666777777777776643222 22233 3788888888876532 23455
Q ss_pred cCCCCCcEEecCCceeeeecCC-------CCCCCCcEEEeecccccc----cCChhhhcCCCCcEEecCCCcCCCC----
Q 047624 267 RNLVNLELLELGDNQFTGRIPG-------RNLTSLAILVFVENMLEG----SIPSSLGKCQNLILLDLSNNNLSGT---- 331 (353)
Q Consensus 267 ~~~~~L~~L~l~~n~~~~~~~~-------~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~---- 331 (353)
..+++|++|++++|.+.+.... ...++|++|++++|.+++ .+...+..++.|+.+++++|++++.
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 6678888888888887642111 234788999998888762 2344566678999999999999954
Q ss_pred CCcccccc-cccceEEecCCCCC
Q 047624 332 IPTEVIGL-SSLSIYLDLSQNQL 353 (353)
Q Consensus 332 ~~~~~~~l-~~l~~~l~l~~~~~ 353 (353)
+...+... +.+ +++++.+|++
T Consensus 298 ~~~~~~~~~~~~-~~~~~~~~~~ 319 (319)
T cd00116 298 LAESLLEPGNEL-ESLWVKDDSF 319 (319)
T ss_pred HHHHHhhcCCch-hhcccCCCCC
Confidence 44455556 678 8999998875
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=1.3e-19 Score=156.85 Aligned_cols=255 Identities=20% Similarity=0.278 Sum_probs=125.7
Q ss_pred EEEccCCCCccc-cCcccccCCCCcEEEcccCcccc----cCCcccCCCCCccEEEecCCccCC------ccCccccCCC
Q 047624 3 ILWLDNNTYGGQ-IPDNISHCVNLESLFLAHNELVG----KVPGKLGSLSKLRTLAVHHNNLSG------EIPSSFGNLS 71 (353)
Q Consensus 3 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~ 71 (353)
.|+|.++.+++. ....+..+..|+.+++.++.+.. .++..+...+.+++++++++.+.. .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 577778877733 33455667778888888887632 133445566778888887765541 1223444555
Q ss_pred cccEeecCCCcccccChhhhhcccc---ccEEEeCCCcCCCC----CchhhcCCCCCCEEEcCCCCCCCCCCccccCCCC
Q 047624 72 SLERLSAAANQFVGQIPETLGELKR---MRFIGFGANKLSGE----IPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLP 144 (353)
Q Consensus 72 ~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 144 (353)
+|+.|++++|.+....+..+..+.+ |+.|++++|.+... +...+..+ .+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~------------------------~~ 137 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL------------------------PP 137 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC------------------------CC
Confidence 6666666665554333333333333 55555555554411 11122233 13
Q ss_pred CCCEEeccCccccc----cccccccCCCCccEEecCCCcceee-----CCCcccccCccEEEEeeccCCCCCcchhHHHh
Q 047624 145 NLERLNVGDNQFTG----PIPASISNASNLMRLTIPQNGFSGK-----VPSLENLHKLQWVVIAVNHLGNGEKDDLEFVN 215 (353)
Q Consensus 145 ~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 215 (353)
+|+++++++|.++. .+...+..+++|++|++++|.+.+. ...+...++|+.++++.|.+.+... ..+..
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~ 215 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA--SALAE 215 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH--HHHHH
Confidence 44444444444331 1122233344555555555554421 1112233455555555554432111 12333
Q ss_pred hhcccCCccEEEccCCcCCccCchhHhhh----cccCcEEEecCccccC----CCchhhcCCCCCcEEecCCceee
Q 047624 216 SLVNAYGLELLEINTNNFGGMLPEAVGNL----STRIRILRVGNNQLFG----NIPSELRNLVNLELLELGDNQFT 283 (353)
Q Consensus 216 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~ 283 (353)
.+..+++|+.|++++|.+.+.....+... .+.|++|++++|.+++ .+...+..+++|+++++++|.+.
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 44555666666666666554322222221 1356666666665542 12233444455666666666555
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=2.4e-17 Score=153.93 Aligned_cols=246 Identities=25% Similarity=0.384 Sum_probs=171.7
Q ss_pred CCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEe
Q 047624 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGF 102 (353)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 102 (353)
.+.+.|++++..+.. +|..+. +.|+.|++++|.+. .+|..+. ++|++|++++|.+. .+|..+. +.|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 456778887777663 344343 46888888888877 5665543 47888888888776 4555443 46888888
Q ss_pred CCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCccee
Q 047624 103 GANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSG 182 (353)
Q Consensus 103 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 182 (353)
++|.+. .+|..+. .+|+.|++++|.+. .+|..+ +++|+.|++++|.+. .+|..+ .++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt-~LP~~l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIR-TLPAHL--PSGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCccc-cCcccc--hhhHHHHHhcCCcccc
Confidence 888877 5666554 47888888888876 566544 247888888888876 345433 2468888888888876
Q ss_pred eCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCC
Q 047624 183 KVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNI 262 (353)
Q Consensus 183 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 262 (353)
.+..+ .++|+.|.++.|.+...+. .+ +++|+.|++++|.+. .+|..+ +++|++|++++|.++ .+
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~LP~-------~l--~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTSLPA-------SL--PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NL 382 (754)
T ss_pred CCccc--cccceeccccCCccccCCh-------hh--cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CC
Confidence 54332 3678888888887764321 11 268899999999876 455543 358999999999987 56
Q ss_pred chhhcCCCCCcEEecCCceeeeecCC-----CCCCCCcEEEeeccccc
Q 047624 263 PSELRNLVNLELLELGDNQFTGRIPG-----RNLTSLAILVFVENMLE 305 (353)
Q Consensus 263 ~~~~~~~~~L~~L~l~~n~~~~~~~~-----~~~~~L~~L~l~~~~~~ 305 (353)
|..+. ..|+.|++++|++...... ...+.+..+++.+|++.
T Consensus 383 P~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 PENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 66554 3689999999988744221 34578899999999886
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=5.8e-18 Score=124.61 Aligned_cols=163 Identities=27% Similarity=0.499 Sum_probs=103.6
Q ss_pred ccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccE
Q 047624 20 SHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRF 99 (353)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 99 (353)
..+.+++.|.++.|.+. .+|..+..+.+|+.|.+.+|++. .+|.+++.++.|+.|+++-|.+. ..|..|+.+|.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34556666666666665 33444566666666666666665 66666666666666666666665 56666666666666
Q ss_pred EEeCCCcCCC-CCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCC
Q 047624 100 IGFGANKLSG-EIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQN 178 (353)
Q Consensus 100 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 178 (353)
|++..|.+.+ .+|..|-.+..|+.|+++.|.+. .+|..++ ++.+|+.|.+++|.+. .+|..++.+..|++|.+.+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg-~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVG-KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhh-hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 6666666543 25555555666666666666665 5666665 5666777777666665 46666666677777777777
Q ss_pred cceeeCCCcc
Q 047624 179 GFSGKVPSLE 188 (353)
Q Consensus 179 ~~~~~~~~~~ 188 (353)
.++-.++.+.
T Consensus 184 rl~vlppel~ 193 (264)
T KOG0617|consen 184 RLTVLPPELA 193 (264)
T ss_pred eeeecChhhh
Confidence 6665555443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=4.8e-17 Score=119.81 Aligned_cols=157 Identities=26% Similarity=0.477 Sum_probs=105.9
Q ss_pred CCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCE
Q 047624 44 GSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSN 123 (353)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 123 (353)
..+.+.+.|.+++|+++ .+|+.+..+.+|+.|++.+|++. .+|..+..+++|+.|+++-|.+. ..|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34556666677777766 66666777777777777777776 56666777777777777766666 66777777777777
Q ss_pred EEcCCCCCCC-CCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeecc
Q 047624 124 FDFPVNQLQG-GLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202 (353)
Q Consensus 124 L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~ 202 (353)
|++.+|.+.+ .+|..++ .+..|+.|.+.+|.+. .+|..++++++|+.|.+.+|.+-..+..++.+..|+.+++.+|+
T Consensus 107 ldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 7777776643 3444444 4556666777777765 56667777777777777777766666566667777777777766
Q ss_pred CCC
Q 047624 203 LGN 205 (353)
Q Consensus 203 ~~~ 205 (353)
++-
T Consensus 185 l~v 187 (264)
T KOG0617|consen 185 LTV 187 (264)
T ss_pred eee
Confidence 653
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=3.3e-14 Score=116.36 Aligned_cols=235 Identities=19% Similarity=0.286 Sum_probs=138.4
Q ss_pred hhhccccccEEEeCCCcCCCC----CchhhcCCCCCCEEEcCCCCCC---CCCCc-------cccCCCCCCCEEeccCcc
Q 047624 90 TLGELKRMRFIGFGANKLSGE----IPSSIYNLSSLSNFDFPVNQLQ---GGLPT-------DLGFTLPNLERLNVGDNQ 155 (353)
Q Consensus 90 ~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~---~~~~~-------~~~~~~~~L~~L~l~~~~ 155 (353)
.......++.+++++|.+... +...+.+.++|+..+++.---. ..+|. .+. .++.|+.+++++|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~-~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALL-GCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHh-cCCceeEeeccccc
Confidence 345667888999999888633 3345566677888777643211 12222 222 45678888888776
Q ss_pred cccc----ccccccCCCCccEEecCCCcceeeC--------------CCcccccCccEEEEeeccCCCCCcchhHHHhhh
Q 047624 156 FTGP----IPASISNASNLMRLTIPQNGFSGKV--------------PSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSL 217 (353)
Q Consensus 156 ~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 217 (353)
+... +...+.++..|++|.+.+|.+.... .....-+.|++++..+|++.+.+-. .+...+
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~--~~A~~~ 181 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT--ALAEAF 181 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH--HHHHHH
Confidence 6422 2233455777777888777664311 1134456677777777776654433 334456
Q ss_pred cccCCccEEEccCCcCCccC----chhHhhhcccCcEEEecCccccCC----CchhhcCCCCCcEEecCCceeeeecCC-
Q 047624 218 VNAYGLELLEINTNNFGGML----PEAVGNLSTRIRILRVGNNQLFGN----IPSELRNLVNLELLELGDNQFTGRIPG- 288 (353)
Q Consensus 218 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~- 288 (353)
+..+.++.+.+..|.+.... ...+... ++|+.|++..|.++.. +.+.++.+++|+.+++++|.+......
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 66677777777777665332 1233333 4777777777766522 344556667777777777776643322
Q ss_pred ------CCCCCCcEEEeeccccccc----CChhhhcCCCCcEEecCCCcC
Q 047624 289 ------RNLTSLAILVFVENMLEGS----IPSSLGKCQNLILLDLSNNNL 328 (353)
Q Consensus 289 ------~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~ 328 (353)
...|+|+.+.+.+|.++.. +..+....|.|+.|.|++|.+
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3466777777777766421 222334456677777777766
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.30 E-value=1.4e-13 Score=112.69 Aligned_cols=247 Identities=18% Similarity=0.201 Sum_probs=158.6
Q ss_pred CCCCCccEEEecCCccCC----ccCccccCCCcccEeecCCC---cccccC-------hhhhhccccccEEEeCCCcCCC
Q 047624 44 GSLSKLRTLAVHHNNLSG----EIPSSFGNLSSLERLSAAAN---QFVGQI-------PETLGELKRMRFIGFGANKLSG 109 (353)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~---~~~~~~-------~~~~~~l~~L~~L~l~~~~~~~ 109 (353)
..+..++.+++++|.+.. .+.+.+.+-++|+..++++- .....+ ...+..+++|+.+++++|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 344555556666554432 23334444455555555431 011112 2334556688888888887764
Q ss_pred CCch----hhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCC
Q 047624 110 EIPS----SIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVP 185 (353)
Q Consensus 110 ~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 185 (353)
..+. .+.++..|++|.+.+|.+...-...+. ..|.++.. ......-++|+.+....|.+.....
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~---~al~~l~~---------~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG---RALFELAV---------NKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH---HHHHHHHH---------HhccCCCcceEEEEeeccccccccH
Confidence 4443 345667888888888877522222221 12333331 1123345788888888887765332
Q ss_pred -----CcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCcc----CchhHhhhcccCcEEEecCc
Q 047624 186 -----SLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGM----LPEAVGNLSTRIRILRVGNN 256 (353)
Q Consensus 186 -----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~ 256 (353)
.+..++.++.+.+..|++..... .....++..|+.|+.|+++.|.++.. +...++.++ +|+++++++|
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dc 251 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDC 251 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeeccccc
Confidence 26777899999999988765544 35667889999999999999988754 345556664 8999999999
Q ss_pred cccCCCch----hh-cCCCCCcEEecCCceeeeecC------CCCCCCCcEEEeeccccc
Q 047624 257 QLFGNIPS----EL-RNLVNLELLELGDNQFTGRIP------GRNLTSLAILVFVENMLE 305 (353)
Q Consensus 257 ~~~~~~~~----~~-~~~~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l~~~~~~ 305 (353)
.+...-.. ++ ...|+|+++.+.+|.++.... ....+.|++|++++|.+.
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 88744332 22 247899999999999884422 255899999999999883
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=6.1e-13 Score=112.16 Aligned_cols=182 Identities=18% Similarity=0.179 Sum_probs=78.2
Q ss_pred CCCCCCEEeccCcccccccc-ccccCCCCccEEecCCCcceeeCCC---cccccCccEEEEeeccCCCCCcchhHHHhhh
Q 047624 142 TLPNLERLNVGDNQFTGPIP-ASISNASNLMRLTIPQNGFSGKVPS---LENLHKLQWVVIAVNHLGNGEKDDLEFVNSL 217 (353)
Q Consensus 142 ~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 217 (353)
++..|+++.+.++....... .....+|.++.|+++.|-+....+. +..+|+|+.|.++.|.+....... .-
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-----~~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-----TT 193 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-----ch
Confidence 34556666666665542111 2344566666666666655432221 455566666666655543211110 00
Q ss_pred cccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCcc-ccCCCchhhcCCCCCcEEecCCceeeeecC---CCCCCC
Q 047624 218 VNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQ-LFGNIPSELRNLVNLELLELGDNQFTGRIP---GRNLTS 293 (353)
Q Consensus 218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~ 293 (353)
...+.++.|.++.|.++..-..++....|+++.|++..|. +. .-.....-+..|++|+|++|++.+... .+.++.
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 1334445555555544422222222212355555555442 11 101111123445555555554443221 144455
Q ss_pred CcEEEeecccccc-cCChh-----hhcCCCCcEEecCCCcCC
Q 047624 294 LAILVFVENMLEG-SIPSS-----LGKCQNLILLDLSNNNLS 329 (353)
Q Consensus 294 L~~L~l~~~~~~~-~~~~~-----~~~~~~L~~l~l~~n~~~ 329 (353)
|+.|+++.|.+.+ ..|++ ...+++|++|++..|++.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 5555555554432 11222 233445555555555553
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=7.3e-12 Score=119.45 Aligned_cols=274 Identities=23% Similarity=0.245 Sum_probs=156.6
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCc--ccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNE--LVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAA 79 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (353)
|+..+.++.+.. .+.. ..+++|++|-+..+. +..+....|..++.|++||+++|.-.+.+|..++.+-+||+|+++
T Consensus 526 rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 526 RRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred eEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 344455555442 2221 234578888888875 444555557889999999999876656888999999999999999
Q ss_pred CCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCC--CCCccccCCCCCCCEEeccCcccc
Q 047624 80 ANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQG--GLPTDLGFTLPNLERLNVGDNQFT 157 (353)
Q Consensus 80 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~ 157 (353)
++.+. .+|..+.+++.|.+|++..+......+.....+++||+|.+....... .....+ ..+..|+.+.......
T Consensus 604 ~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 604 DTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISSV- 680 (889)
T ss_pred CCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecchh-
Confidence 98887 688889999999999988877654556666668889988886654211 111111 1445555555433322
Q ss_pred ccccccccCCCCcc----EEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcC
Q 047624 158 GPIPASISNASNLM----RLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNF 233 (353)
Q Consensus 158 ~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 233 (353)
.+...+..+++|. .+.+.++........+..+.+++.|.+..+..................++++..+.+..+..
T Consensus 681 -~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 681 -LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred -HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc
Confidence 1112223333333 23333344444555677888888888887766432111000000000111222222222211
Q ss_pred CccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceee
Q 047624 234 GGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFT 283 (353)
Q Consensus 234 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 283 (353)
. ..+ ....++++|+.|.+..|...+..+.....+..+..+.+..+.+.
T Consensus 760 ~-r~l-~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 760 L-RDL-TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred c-ccc-chhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 1 111 12245579999999988766554444555555555455444443
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.2e-12 Score=110.51 Aligned_cols=189 Identities=20% Similarity=0.203 Sum_probs=83.6
Q ss_pred CCCCccEEEecCCccCCccC--ccccCCCcccEeecCCCcccc--cChhhhhccccccEEEeCCCcCCCCCchh-hcCCC
Q 047624 45 SLSKLRTLAVHHNNLSGEIP--SSFGNLSSLERLSAAANQFVG--QIPETLGELKRMRFIGFGANKLSGEIPSS-IYNLS 119 (353)
Q Consensus 45 ~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~ 119 (353)
++.+|+.+.+.++.+. ..+ .....+++++.|+++.|-+.. .+......+|+|+.|+++.|.+..-.... -..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 3445555555555443 222 234445555555555554431 11222344555555555555543111110 11234
Q ss_pred CCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeC--CCcccccCccEEE
Q 047624 120 SLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKV--PSLENLHKLQWVV 197 (353)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~ 197 (353)
+|+.|.++.|+++.....++...+|+++.|.+..|.....-......+..|++|++++|.+-... +....++.|..+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 55555555555543333333334555555555555211011111222344555555555544322 2244555555555
Q ss_pred EeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCC
Q 047624 198 IAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFG 234 (353)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 234 (353)
++.+++......+.+........+.|++|++..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 5555554433333333333444555555555555543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=4.9e-11 Score=91.58 Aligned_cols=127 Identities=25% Similarity=0.337 Sum_probs=42.4
Q ss_pred hcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCC
Q 047624 217 LVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSL 294 (353)
Q Consensus 217 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L 294 (353)
..++..+++|++.++.+... +.+.....+|+.|++++|.+. .+ +.+..++.|++|++++|.++...+. ..+|+|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 34455677788887776532 233321147788888888776 22 3566777888888888877754322 346778
Q ss_pred cEEEeecccccccC-ChhhhcCCCCcEEecCCCcCCCCCC---cccccccccceEEec
Q 047624 295 AILVFVENMLEGSI-PSSLGKCQNLILLDLSNNNLSGTIP---TEVIGLSSLSIYLDL 348 (353)
Q Consensus 295 ~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~l~~l~~~l~l 348 (353)
++|++++|++.+.- ...+..+++|+.|++.+|+++..-- .-+..+|+| +.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~L-k~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSL-KVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT--SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChh-heeCC
Confidence 88888887775422 2456677788888888887774311 234467777 67763
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=4.3e-12 Score=110.56 Aligned_cols=189 Identities=24% Similarity=0.339 Sum_probs=122.0
Q ss_pred EeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEc
Q 047624 149 LNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEI 228 (353)
Q Consensus 149 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 228 (353)
.+++.|++. .+|..+..+-.|+.+.+..|.+-.++..+.++..+.+++++.|.+...+.. + ..--|+.+.+
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-------l-C~lpLkvli~ 150 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-------L-CDLPLKVLIV 150 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-------h-hcCcceeEEE
Confidence 334444443 334444444444444444444444444444444455555544444322111 1 1112455555
Q ss_pred cCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccC
Q 047624 229 NTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSI 308 (353)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 308 (353)
++|+++ .+|..+... ..|.+|+.+.|.+. .+|..++++.+|+.|+++.|.+....+.-..-.|.+||+++|++. .+
T Consensus 151 sNNkl~-~lp~~ig~~-~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLL-PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-YL 226 (722)
T ss_pred ecCccc-cCCcccccc-hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-ec
Confidence 555555 455555544 48889999999887 778888899999999999998886666555667889999999998 79
Q ss_pred ChhhhcCCCCcEEecCCCcCCCCCCccccc--ccccceEEecCCC
Q 047624 309 PSSLGKCQNLILLDLSNNNLSGTIPTEVIG--LSSLSIYLDLSQN 351 (353)
Q Consensus 309 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~--l~~l~~~l~l~~~ 351 (353)
|-+|..+..|++|.|.+|++. +.|-.+|. .=.+-+||++.-|
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 999999999999999999999 77766553 3333367776655
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=2.8e-12 Score=111.72 Aligned_cols=188 Identities=25% Similarity=0.436 Sum_probs=133.4
Q ss_pred EEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcc
Q 047624 4 LWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83 (353)
Q Consensus 4 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 83 (353)
.|++.|++. ++|..+..|..|+.+.+..|.+. .+|..+.++..|++|+++.|+++ .+|..++.+ -|+.|.+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCcc
Confidence 567777766 67777777777777777777665 56677777888888888888777 667766655 477777777777
Q ss_pred cccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccccc
Q 047624 84 VGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPAS 163 (353)
Q Consensus 84 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 163 (353)
+ ..|..++..+.|..|+.+.|.+. .+|..+..+.+|+.|.+..|.+. .+|.... .-.|..|+++.|++. .+|..
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeecccCcee-ecchh
Confidence 6 56777777777777888777777 66777777777777777777776 5555554 224777788877776 67777
Q ss_pred ccCCCCccEEecCCCcceeeCCC---cccccCccEEEEeec
Q 047624 164 ISNASNLMRLTIPQNGFSGKVPS---LENLHKLQWVVIAVN 201 (353)
Q Consensus 164 l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~l~l~~~ 201 (353)
+.++..|++|.|.+|++..-+.. .+..+-.++|....+
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 78888888888888877653332 344555666666555
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=2.7e-11 Score=97.74 Aligned_cols=126 Identities=25% Similarity=0.268 Sum_probs=74.2
Q ss_pred CCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhccc
Q 047624 168 SNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTR 247 (353)
Q Consensus 168 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 247 (353)
..|+++++++|.++....++.-.|.++.|+++.|.+.. ...++.+++|..|++++|.++ ....|-..+ .+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--------v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KL-GN 353 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--------VQNLAELPQLQLLDLSGNLLA-ECVGWHLKL-GN 353 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceee--------ehhhhhcccceEeecccchhH-hhhhhHhhh-cC
Confidence 44566666666666555555555666666666665532 223455566666666666554 233333344 37
Q ss_pred CcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC---CCCCCCcEEEeeccccc
Q 047624 248 IRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG---RNLTSLAILVFVENMLE 305 (353)
Q Consensus 248 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~~~~~ 305 (353)
+++|.+++|.+. ....+.++.+|+.||+++|++...... +.+|.|+.+.+-+|++.
T Consensus 354 IKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 354 IKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred EeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 788888888763 234567777888888888877643222 44555555555555554
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.05 E-value=1.2e-10 Score=73.73 Aligned_cols=61 Identities=43% Similarity=0.531 Sum_probs=53.4
Q ss_pred CCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 292 TSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
|+|++|++++|++....+..|.++++|+.|++++|.++...|+.|.++++| ++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L-~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNL-RYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTE-SEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCC-CEEeCcCCcC
Confidence 567888888888885556788999999999999999997778899999999 8999999986
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=5.5e-10 Score=99.59 Aligned_cols=195 Identities=29% Similarity=0.449 Sum_probs=113.7
Q ss_pred EEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCC-cccEeecCCCcccccChhhhhccccccEEEeCCCc
Q 047624 28 LFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLS-SLERLSAAANQFVGQIPETLGELKRMRFIGFGANK 106 (353)
Q Consensus 28 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 106 (353)
++...+.+. .....+..+..++.|++.++.+. .++.....+. +|+.|+++++.+. ..+..+..++.|+.|+++.|+
T Consensus 98 l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 455555442 11222344456667777766665 5555555553 6777777777665 333456666777777777777
Q ss_pred CCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCC
Q 047624 107 LSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPS 186 (353)
Q Consensus 107 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 186 (353)
+. .++......+.|+.|++++|.+. .++.... ....|+++.+.+|... ..+..+..++++..+.+.+|++......
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccch
Confidence 66 44444445566777777777665 4544332 2344677777666432 2344555666666666666666554455
Q ss_pred cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccC
Q 047624 187 LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGML 237 (353)
Q Consensus 187 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 237 (353)
+..+++++++.+++|.+... ..+....+++.++++++.+....
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i--------~~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSI--------SSLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hccccccceecccccccccc--------ccccccCccCEEeccCccccccc
Confidence 66666677777776665432 12555666777777776665443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=3.8e-10 Score=86.72 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=7.6
Q ss_pred CCCccEEEecCCccCCccCccccCCCcccEeecCCCccc
Q 047624 46 LSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV 84 (353)
Q Consensus 46 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 84 (353)
+.+|+.|++++|.+. .+ +.+..++.|++|++++|.+.
T Consensus 41 l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 41 LDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---
T ss_pred hcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCC
Confidence 344444444444443 22 12333444444444444443
No 35
>PLN03150 hypothetical protein; Provisional
Probab=99.01 E-value=1.1e-09 Score=102.41 Aligned_cols=108 Identities=32% Similarity=0.598 Sum_probs=94.6
Q ss_pred CCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeC
Q 047624 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFG 103 (353)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 103 (353)
.++.|+++++.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999888888889999999999999999988899899999999999999999998899999999999999999
Q ss_pred CCcCCCCCchhhcCC-CCCCEEEcCCCCC
Q 047624 104 ANKLSGEIPSSIYNL-SSLSNFDFPVNQL 131 (353)
Q Consensus 104 ~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 131 (353)
+|.+.+.+|..+... .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 999988888877653 4667888888764
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=6.6e-10 Score=99.04 Aligned_cols=199 Identities=31% Similarity=0.419 Sum_probs=146.7
Q ss_pred EEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCC-CccEEecCCCcceeeCCCcccccCccEEEEeec
Q 047624 123 NFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNAS-NLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVN 201 (353)
Q Consensus 123 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~ 201 (353)
.+....+.+...... .. ..+.++.+++.++.+. .++....... +|+.|++++|.+...+..+..++.|+.|.++.|
T Consensus 97 ~l~~~~~~~~~~~~~-~~-~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISE-LL-ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchh-hh-cccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 566676665322222 22 4567899999998887 4566666664 899999999999877667888999999999998
Q ss_pred cCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCce
Q 047624 202 HLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQ 281 (353)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 281 (353)
.+... .......+.++.++++++.+. .+|... ..+..|+++.+++|... ..+..+.++..+..+.+.+|+
T Consensus 174 ~l~~l-------~~~~~~~~~L~~L~ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 174 DLSDL-------PKLLSNLSNLNNLDLSGNKIS-DLPPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred hhhhh-------hhhhhhhhhhhheeccCCccc-cCchhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence 87532 222237788999999999887 444433 23346999999999544 556678888899999999988
Q ss_pred eee-ecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCccc
Q 047624 282 FTG-RIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEV 336 (353)
Q Consensus 282 ~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 336 (353)
+.. ......++.+++|++++|.+..... +....+++.++++++.++...|...
T Consensus 244 ~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 244 LEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred eeeccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 875 3444777889999999998884433 7888899999999998886666543
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.3e-10 Score=93.85 Aligned_cols=179 Identities=18% Similarity=0.231 Sum_probs=96.3
Q ss_pred CCCCCccEEEecCCccCCccCccccCCCcccEeecCCCccc-----------------------ccChhhhhccccccEE
Q 047624 44 GSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFV-----------------------GQIPETLGELKRMRFI 100 (353)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----------------------~~~~~~~~~l~~L~~L 100 (353)
.-+++|+.+.++.|.-. .+......-|.|+++........ +.....+..+..|+++
T Consensus 211 ~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred HHhhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 34566677777766533 22232333356666665443222 1111122334566666
Q ss_pred EeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcc
Q 047624 101 GFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGF 180 (353)
Q Consensus 101 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 180 (353)
++++|.++ .+.+...-.|.++.|++++|.+. .+.. +. .+++|+.|++++|.+. .+..+-.++.++++|.+++|.+
T Consensus 290 DLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La-~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 290 DLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LA-ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred cccccchh-hhhhhhhhccceeEEecccccee-eehh-hh-hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH
Confidence 66666665 44444455566666666666664 2222 22 4566666666666665 3344444566666666666655
Q ss_pred eeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCC
Q 047624 181 SGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFG 234 (353)
Q Consensus 181 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 234 (353)
... ..+..+-+|.+|++..|++.. .+....+.++|+|+.+.+.+|.+.
T Consensus 365 E~L-SGL~KLYSLvnLDl~~N~Ie~-----ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 365 ETL-SGLRKLYSLVNLDLSSNQIEE-----LDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhh-hhhHhhhhheeccccccchhh-----HHHhcccccccHHHHHhhcCCCcc
Confidence 432 224555566666666655432 234455666666666666666654
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.97 E-value=1.3e-09 Score=101.85 Aligned_cols=105 Identities=34% Similarity=0.536 Sum_probs=89.1
Q ss_pred cCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhcCCCCcEEecC
Q 047624 247 RIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLS 324 (353)
Q Consensus 247 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 324 (353)
.++.|+++++.+.+.+|..+..+++|+.|++++|.+.+..+. ..+++|+.|++++|++.+.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 377888999998888888899999999999999998877663 778899999999999998899999999999999999
Q ss_pred CCcCCCCCCcccccc-cccceEEecCCCC
Q 047624 325 NNNLSGTIPTEVIGL-SSLSIYLDLSQNQ 352 (353)
Q Consensus 325 ~n~~~~~~~~~~~~l-~~l~~~l~l~~~~ 352 (353)
+|++++.+|..+..+ ..+ ..+++.+|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~-~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHR-ASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccC-ceEEecCCc
Confidence 999999999887764 355 577777764
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=7.8e-10 Score=105.82 Aligned_cols=249 Identities=20% Similarity=0.237 Sum_probs=150.2
Q ss_pred CCCcEEEcccCcccccCCcccCCCCCccEEEecCCc--cCCccCccccCCCcccEeecCCCcccccChhhhhccccccEE
Q 047624 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNN--LSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFI 100 (353)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 100 (353)
...|...+.++.+... +.. ..+++|++|-+..+. +.......|..++.|++|++++|.--+.+|+.++.+.+||.|
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 5567777777766532 322 345689999888875 443444558889999999999887767899999999999999
Q ss_pred EeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccc--ccccccccCCCCccEEecCCC
Q 047624 101 GFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFT--GPIPASISNASNLMRLTIPQN 178 (353)
Q Consensus 101 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~ 178 (353)
+++++.+. .+|..+..+..|.+|++..+.....+ ..+...+.+|+.|.+...... ......+..+..|+.+.....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 99999988 89999999999999999887755344 333335888999887655421 112223344445555544333
Q ss_pred cceeeCCCcccccCcc----EEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhH-----hh-hcccC
Q 047624 179 GFSGKVPSLENLHKLQ----WVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAV-----GN-LSTRI 248 (353)
Q Consensus 179 ~~~~~~~~~~~~~~L~----~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~-~~~~L 248 (353)
.. .....+.....|. .+.+..+. .......+....+|+.|.+..+........+. .. + +++
T Consensus 679 s~-~~~e~l~~~~~L~~~~~~l~~~~~~-------~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f-~~l 749 (889)
T KOG4658|consen 679 SV-LLLEDLLGMTRLRSLLQSLSIEGCS-------KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCF-PNL 749 (889)
T ss_pred hh-HhHhhhhhhHHHHHHhHhhhhcccc-------cceeecccccccCcceEEEEcCCCchhhcccccccchhhhH-HHH
Confidence 22 1111122222222 22211111 11234455667778888887776653222111 11 2 234
Q ss_pred cEEEecCccccCCCchhhcCCCCCcEEecCCceeeee
Q 047624 249 RILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGR 285 (353)
Q Consensus 249 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 285 (353)
..+...+|... ..+.+.-..++|+.|.+..|.....
T Consensus 750 ~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 750 SKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred HHHHhhccccc-cccchhhccCcccEEEEeccccccc
Confidence 44444444332 2334445567888888887765544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=2.5e-09 Score=67.55 Aligned_cols=59 Identities=39% Similarity=0.557 Sum_probs=29.6
Q ss_pred CCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCc
Q 047624 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ 82 (353)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 82 (353)
+|++|++++|.+..+.++.|.++++|++|++++|.+....+.+|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555544444445555555555555555543344445555555555555443
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=2.1e-09 Score=96.09 Aligned_cols=247 Identities=23% Similarity=0.262 Sum_probs=143.0
Q ss_pred CCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCE
Q 047624 69 NLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLER 148 (353)
Q Consensus 69 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 148 (353)
.+..++.+.+..+.+.. ....+..+.+|+.+.+.+|.+. .+...+..+++|++|++++|.+...-+.. .++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l~---~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGLS---TLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccchh---hccchhh
Confidence 34455555555555442 2223555666777777777766 33332556677777777777765222221 3455777
Q ss_pred EeccCccccccccccccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEE
Q 047624 149 LNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLE 227 (353)
Q Consensus 149 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 227 (353)
|++.+|.+... ..+..++.|+.+++++|.+..+... ...+.+++.+.+..|.+.... .+.....+..+.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--------~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--------GLDLLKKLVLLS 214 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--------chHHHHHHHHhh
Confidence 77777776532 2334466777777777776654443 456667777777766553322 111222222234
Q ss_pred ccCCcCCccCchhHhhhc-ccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccc
Q 047624 228 INTNNFGGMLPEAVGNLS-TRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEG 306 (353)
Q Consensus 228 l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~ 306 (353)
+..+.+...-+ +...+ .+|+.++++++.+. ..+..+..++.+..+++.+|.+.........+.+..++...+.+..
T Consensus 215 l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 215 LLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLAL 291 (414)
T ss_pred cccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccccccccchHHHhccCcchhcc
Confidence 44554432111 11110 03788888888876 4435677788889999998888777666777777788887777652
Q ss_pred cC---Chh-hhcCCCCcEEecCCCcCCCCCC
Q 047624 307 SI---PSS-LGKCQNLILLDLSNNNLSGTIP 333 (353)
Q Consensus 307 ~~---~~~-~~~~~~L~~l~l~~n~~~~~~~ 333 (353)
.. ... ....+.++.+.+.+|+.....+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 292 SEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhhhhccccccccccccccccccCccccccc
Confidence 21 111 3455677888888887765443
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=6.8e-10 Score=89.66 Aligned_cols=176 Identities=18% Similarity=0.160 Sum_probs=101.5
Q ss_pred CCCEEeccCccccc-cccccccCCCCccEEecCCCcceeeCC-CcccccCccEEEEeeccCCCCCcchhHHHhhhcccCC
Q 047624 145 NLERLNVGDNQFTG-PIPASISNASNLMRLTIPQNGFSGKVP-SLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYG 222 (353)
Q Consensus 145 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 222 (353)
.++.+++++..++. .+..-+..|.+|+.|.+.++.+.+.+. .+.....|+.++++.+. +..+......+.+|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s----G~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS----GFTENALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc----ccchhHHHHHHHhhhh
Confidence 47777777665542 233345567777777777777665332 25666777777776542 1122244455667777
Q ss_pred ccEEEccCCcCCcc-CchhHhhhcccCcEEEecCcc--ccCCCch-hhcCCCCCcEEecCCceeeeecC---CCCCCCCc
Q 047624 223 LELLEINTNNFGGM-LPEAVGNLSTRIRILRVGNNQ--LFGNIPS-ELRNLVNLELLELGDNQFTGRIP---GRNLTSLA 295 (353)
Q Consensus 223 L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~--~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~L~ 295 (353)
|.+|++++|..... ....+.+..++|+.|+++++. +.+.... ....||+|..||+++|....... ...++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 88888877765433 223344555678888888774 2222222 23467888888888876442211 14456666
Q ss_pred EEEeecccccccCChh---hhcCCCCcEEecCCC
Q 047624 296 ILVFVENMLEGSIPSS---LGKCQNLILLDLSNN 326 (353)
Q Consensus 296 ~L~l~~~~~~~~~~~~---~~~~~~L~~l~l~~n 326 (353)
+|.++.|+.. +|.. +...|.|.+|++.+|
T Consensus 342 ~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 6666666542 3332 345566666666664
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.8e-09 Score=86.16 Aligned_cols=175 Identities=20% Similarity=0.171 Sum_probs=126.4
Q ss_pred CCccEEecCCCcceeeC--CCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcC-CccCchhHhhh
Q 047624 168 SNLMRLTIPQNGFSGKV--PSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNF-GGMLPEAVGNL 244 (353)
Q Consensus 168 ~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~ 244 (353)
..+++++++...++.-. ..+..|+.|+.+.+.+..+.+ ++...++...+|+.++++.+.- +......+...
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc------HHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence 45889999987765422 227889999999999988876 7788889999999999998863 32222333333
Q ss_pred cccCcEEEecCccccCCCchh-hcC-CCCCcEEecCCceee---eec--CCCCCCCCcEEEeeccc-ccccCChhhhcCC
Q 047624 245 STRIRILRVGNNQLFGNIPSE-LRN-LVNLELLELGDNQFT---GRI--PGRNLTSLAILVFVENM-LEGSIPSSLGKCQ 316 (353)
Q Consensus 245 ~~~L~~L~l~~~~~~~~~~~~-~~~-~~~L~~L~l~~n~~~---~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~ 316 (353)
.+.|.+|+++.|.++.....+ +.+ -++|..|+++|+.-. +.. -...+|++..||+++|. ++......|..++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 468999999999876332222 222 478999999997422 111 12778999999999874 4444445677889
Q ss_pred CCcEEecCCCcCCCCCC---cccccccccceEEecCCC
Q 047624 317 NLILLDLSNNNLSGTIP---TEVIGLSSLSIYLDLSQN 351 (353)
Q Consensus 317 ~L~~l~l~~n~~~~~~~---~~~~~l~~l~~~l~l~~~ 351 (353)
.|+++.++.|.-. +| -.+...|++ .|||+=+|
T Consensus 339 ~L~~lSlsRCY~i--~p~~~~~l~s~psl-~yLdv~g~ 373 (419)
T KOG2120|consen 339 YLQHLSLSRCYDI--IPETLLELNSKPSL-VYLDVFGC 373 (419)
T ss_pred hheeeehhhhcCC--ChHHeeeeccCcce-EEEEeccc
Confidence 9999999999654 44 366789999 89998765
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.53 E-value=8e-09 Score=92.35 Aligned_cols=241 Identities=24% Similarity=0.300 Sum_probs=140.6
Q ss_pred hccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCcc
Q 047624 92 GELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLM 171 (353)
Q Consensus 92 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 171 (353)
..+..++.+.+..+.+. .....+..+.++..+++..|.+. .+...+. .+++|+.+++++|.+.+.. .+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~-~~~~L~~L~ls~N~I~~i~--~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLS-SLVNLQVLDLSFNKITKLE--GLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchh-hhhcchheecccccccccc--chhhccchh
Confidence 34556666667777766 32334677788888888888886 3333222 5788888888888887432 355566788
Q ss_pred EEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEE
Q 047624 172 RLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRIL 251 (353)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 251 (353)
.|++.+|.++... .+..+..++.+.++.|.+...... . ...+..++.+.+.++.+... ..+... ..+..+
T Consensus 144 ~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~-----~-~~~~~~l~~l~l~~n~i~~i--~~~~~~-~~l~~~ 213 (414)
T KOG0531|consen 144 ELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIEND-----E-LSELISLEELDLGGNSIREI--EGLDLL-KKLVLL 213 (414)
T ss_pred hheeccCcchhcc-CCccchhhhcccCCcchhhhhhhh-----h-hhhccchHHHhccCCchhcc--cchHHH-HHHHHh
Confidence 8888888877533 344577777777777766432210 1 35566777777777765422 111111 133344
Q ss_pred EecCccccCCCchhhcCCC--CCcEEecCCceeeee-cCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcC
Q 047624 252 RVGNNQLFGNIPSELRNLV--NLELLELGDNQFTGR-IPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNL 328 (353)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 328 (353)
++..+.++.. ..+...+ +|+.+++++|++... .....+..++.+++.++.+... ..+...+.+..+....+++
T Consensus 214 ~l~~n~i~~~--~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 214 SLLDNKISKL--EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL 289 (414)
T ss_pred hcccccceec--cCcccchhHHHHHHhcccCccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence 5666655421 1122222 377888888877654 3446677777777777766532 3344555666666666665
Q ss_pred CCC---CCcc-cccccccceEEecCCCC
Q 047624 329 SGT---IPTE-VIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 329 ~~~---~~~~-~~~l~~l~~~l~l~~~~ 352 (353)
... .... ....+.+ ..+.+..|+
T Consensus 290 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 316 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTL-VTLTLELNP 316 (414)
T ss_pred cchhhhhccccccccccc-cccccccCc
Confidence 421 1121 3345555 455555443
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=3.6e-08 Score=79.91 Aligned_cols=85 Identities=22% Similarity=0.257 Sum_probs=47.6
Q ss_pred cCCCCcEEEcccCccccc--CCcccCCCCCccEEEecCCccCCccCccc-cCCCcccEeecCCCccccc-Chhhhhcccc
Q 047624 21 HCVNLESLFLAHNELVGK--VPGKLGSLSKLRTLAVHHNNLSGEIPSSF-GNLSSLERLSAAANQFVGQ-IPETLGELKR 96 (353)
Q Consensus 21 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~ 96 (353)
.+.+++.+++.+|.+.+. +...+.++|.|++|+++.|++...+ ..+ -...+|++|.+.+..+... .-..+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 446677777777766532 2333456777777777777655222 112 2345677777766655422 2223455666
Q ss_pred ccEEEeCCCc
Q 047624 97 MRFIGFGANK 106 (353)
Q Consensus 97 L~~L~l~~~~ 106 (353)
+++|+++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 6666666663
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.52 E-value=1e-07 Score=76.36 Aligned_cols=237 Identities=18% Similarity=0.203 Sum_probs=153.7
Q ss_pred hcCCCCCCEEEcCCCCCCCCCCcccc---CCCCCCCEEeccCccc---ccc-------ccccccCCCCccEEecCCCcce
Q 047624 115 IYNLSSLSNFDFPVNQLQGGLPTDLG---FTLPNLERLNVGDNQF---TGP-------IPASISNASNLMRLTIPQNGFS 181 (353)
Q Consensus 115 l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~---~~~-------~~~~l~~~~~L~~L~l~~~~~~ 181 (353)
+..+..+..+++++|.+...-..++. ..-.+|+...+++-.. .+. +...+..||+++++++++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 44478899999999998643222221 1345677776655321 111 2234567899999999999887
Q ss_pred eeCCC-----cccccCccEEEEeeccCCCCCcchh-------HHHhhhcccCCccEEEccCCcCCccCc----hhHhhhc
Q 047624 182 GKVPS-----LENLHKLQWVVIAVNHLGNGEKDDL-------EFVNSLVNAYGLELLEINTNNFGGMLP----EAVGNLS 245 (353)
Q Consensus 182 ~~~~~-----~~~~~~L~~l~l~~~~~~~~~~~~~-------~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~ 245 (353)
...+. ++....++.|.+++|+++....... .......+-|.|+.+.+..|++..... ..+...
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh- 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH- 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh-
Confidence 65543 5677889999999998865443322 222344567889999999998753221 122223
Q ss_pred ccCcEEEecCccccCC-----CchhhcCCCCCcEEecCCceeeeecCC------CCCCCCcEEEeecccccccCChhh--
Q 047624 246 TRIRILRVGNNQLFGN-----IPSELRNLVNLELLELGDNQFTGRIPG------RNLTSLAILVFVENMLEGSIPSSL-- 312 (353)
Q Consensus 246 ~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~-- 312 (353)
.+|+++.+..|.+... .-..+..+.+|+.|++++|-++..... ..++.|+.|.+.+|-+......++
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 4899999999987622 112345678999999999988744332 455678999999998876555443
Q ss_pred ----hcCCCCcEEecCCCcCCCC-CCc----cc--ccccccceEEecCCCCC
Q 047624 313 ----GKCQNLILLDLSNNNLSGT-IPT----EV--IGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 313 ----~~~~~L~~l~l~~n~~~~~-~~~----~~--~~l~~l~~~l~l~~~~~ 353 (353)
...|+|..|-..+|.+-+. +-. .+ ..+|.| ..|.+.+|.|
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L-~~le~ngNr~ 315 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLL-VDLERNGNRI 315 (388)
T ss_pred HhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHH-HHHHHccCcc
Confidence 2257788888888866432 211 11 146666 5666766654
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=3.6e-08 Score=79.92 Aligned_cols=208 Identities=18% Similarity=0.165 Sum_probs=124.0
Q ss_pred CCCcEEEcccCcccccC-Cccc-CCCCCccEEEecCCccCC--ccCccccCCCcccEeecCCCcccccChhhh-hccccc
Q 047624 23 VNLESLFLAHNELVGKV-PGKL-GSLSKLRTLAVHHNNLSG--EIPSSFGNLSSLERLSAAANQFVGQIPETL-GELKRM 97 (353)
Q Consensus 23 ~~L~~L~l~~~~~~~~~-~~~~-~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L 97 (353)
.-++-+.+.++.+...- ...| ..+..++.+|+.+|.++. .+...+.+||.|++|+++.|++...+ ..+ ....+|
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl 123 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNL 123 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccce
Confidence 33445555555543211 1112 246678888888888763 34455677888888888888776322 222 345678
Q ss_pred cEEEeCCCcCCCC-CchhhcCCCCCCEEEcCCCCCCC-CCCccccCCC-CCCCEEeccCccccccc--cccccCCCCccE
Q 047624 98 RFIGFGANKLSGE-IPSSIYNLSSLSNFDFPVNQLQG-GLPTDLGFTL-PNLERLNVGDNQFTGPI--PASISNASNLMR 172 (353)
Q Consensus 98 ~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~-~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~ 172 (353)
+.+-+.+..+... ....+..+|.++.|+++.|.+.. .+........ +.+++++...|...... ......+|++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 8888877776532 33345566777777777774321 1112222222 35666666666543211 111223677888
Q ss_pred EecCCCcceeeCCC--cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCcc
Q 047624 173 LTIPQNGFSGKVPS--LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGM 236 (353)
Q Consensus 173 L~l~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 236 (353)
+-+..|++...... ...+|.+..|.++.+.+ ..|+..+.+..++.+..|++..+.+.+.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i-----dswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI-----DSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhccccc-----ccHHHHHHHcCCchhheeeccCCccccc
Confidence 88888877654332 45566666676666555 4577788888899999999988877643
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=2e-07 Score=74.70 Aligned_cols=226 Identities=19% Similarity=0.185 Sum_probs=126.5
Q ss_pred CCCCCccEEEecCCccCC----ccCccccCCCcccEeecCCCcc---ccc-------ChhhhhccccccEEEeCCCcCCC
Q 047624 44 GSLSKLRTLAVHHNNLSG----EIPSSFGNLSSLERLSAAANQF---VGQ-------IPETLGELKRMRFIGFGANKLSG 109 (353)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~---~~~-------~~~~~~~l~~L~~L~l~~~~~~~ 109 (353)
..+..++.+++++|.+.. .+...+.+-.+|+..+++.--- ... +...+.+||+|+..+++.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 346778888888887753 2334444555677666654211 011 12234566777777777777654
Q ss_pred CCchh----hcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCC
Q 047624 110 EIPSS----IYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVP 185 (353)
Q Consensus 110 ~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 185 (353)
..|.. +++...|.+|.+++|.+...-...++ +.|.+| ..| .....-|.|+.+....|++..-..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig---kal~~l--a~n-------KKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG---KALFHL--AYN-------KKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHH---HHHHHH--HHH-------hhhccCCCceEEEeccchhccCcH
Confidence 44432 34445666666666665411111111 011111 111 112234677777777776654222
Q ss_pred C-----cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccC----chhHhhhcccCcEEEecCc
Q 047624 186 S-----LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGML----PEAVGNLSTRIRILRVGNN 256 (353)
Q Consensus 186 ~-----~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~ 256 (353)
. +.....++.+.+..|++...+...+ ....+..+.+|+.|+++.|.++-.. ...++.++ .|++|.+..|
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L-~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDC 252 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTML-AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDC 252 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHH-HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccch
Confidence 1 4445678888888888765444332 3446677888888888888876432 23444554 6788888888
Q ss_pred cccCCCch----hhc--CCCCCcEEecCCceee
Q 047624 257 QLFGNIPS----ELR--NLVNLELLELGDNQFT 283 (353)
Q Consensus 257 ~~~~~~~~----~~~--~~~~L~~L~l~~n~~~ 283 (353)
-++..-.. .+. ..|+|..|...+|.+.
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 76533221 222 3466777777776554
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=1.5e-08 Score=91.60 Aligned_cols=109 Identities=29% Similarity=0.322 Sum_probs=54.3
Q ss_pred hhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCch-hhcCCCCCcEEecCCceeeeecCCCCCCCC
Q 047624 216 SLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPS-ELRNLVNLELLELGDNQFTGRIPGRNLTSL 294 (353)
Q Consensus 216 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L 294 (353)
+++-++.++.|+++.|+++.. ..+...+ .|++|++++|.+. .+|. ...+|. |..|.++||.++..-....+.+|
T Consensus 182 SLqll~ale~LnLshNk~~~v--~~Lr~l~-~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKV--DNLRRLP-KLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhh--HHHHhcc-cccccccccchhc-cccccchhhhh-heeeeecccHHHhhhhHHhhhhh
Confidence 444445556666666655422 1333342 5666666666554 2222 122232 66666666655544444555556
Q ss_pred cEEEeecccccccCC-hhhhcCCCCcEEecCCCcCC
Q 047624 295 AILVFVENMLEGSIP-SSLGKCQNLILLDLSNNNLS 329 (353)
Q Consensus 295 ~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~ 329 (353)
+.||+++|-+.+... ..++.+..|+.|+|.||++=
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666666555443211 12344455556666666553
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=3.5e-08 Score=89.23 Aligned_cols=124 Identities=25% Similarity=0.297 Sum_probs=86.6
Q ss_pred ccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEecc
Q 047624 73 LERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVG 152 (353)
Q Consensus 73 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 152 (353)
|.+.+.++|.+. .+-.++.-++.++.|++++|++. ... .+..+++|++|++++|.+. .+|..-...+ .|+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 333344444443 34445666788999999999987 333 6788899999999999886 6665444233 48899999
Q ss_pred CccccccccccccCCCCccEEecCCCcceeeCC--CcccccCccEEEEeeccC
Q 047624 153 DNQFTGPIPASISNASNLMRLTIPQNGFSGKVP--SLENLHKLQWVVIAVNHL 203 (353)
Q Consensus 153 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~~ 203 (353)
+|.++.. ..+.++.+|+.|+++.|-+.+... .+..+..|+.|.+.+|.+
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9887632 235678888889999887765332 267777888888887765
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.27 E-value=2e-07 Score=87.40 Aligned_cols=105 Identities=22% Similarity=0.219 Sum_probs=53.9
Q ss_pred CcEEEccCCCCccccC--cccccCCCCcEEEcccCcccc-cCCcccCCCCCccEEEecCCccCCccCccccCCCcccEee
Q 047624 1 LRILWLDNNTYGGQIP--DNISHCVNLESLFLAHNELVG-KVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLS 77 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 77 (353)
|++||++|...-...| ..-..+|.|++|.+.+-.+.. .......++|+|..||++++.++ .+ ..++.+++||+|.
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLS 201 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHh
Confidence 4556666654432322 222345666666666654421 11222345666666666666655 22 4566666666666
Q ss_pred cCCCcccc-cChhhhhccccccEEEeCCCcC
Q 047624 78 AAANQFVG-QIPETLGELKRMRFIGFGANKL 107 (353)
Q Consensus 78 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 107 (353)
+.+=.+.. .....+.++++|+.|+++....
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 65544431 2223445566666666665444
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.23 E-value=5.4e-08 Score=82.42 Aligned_cols=291 Identities=14% Similarity=0.131 Sum_probs=173.0
Q ss_pred CccEEEecCCccCC--ccCccccCCCcccEeecCCCccc-ccC-hhhhhccccccEEEeCCCc-CCCCCch-hhcCCCCC
Q 047624 48 KLRTLAVHHNNLSG--EIPSSFGNLSSLERLSAAANQFV-GQI-PETLGELKRMRFIGFGANK-LSGEIPS-SIYNLSSL 121 (353)
Q Consensus 48 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~-~~~-~~~~~~l~~L~~L~l~~~~-~~~~~~~-~l~~l~~L 121 (353)
.|+.|.+.++.--+ .+......+++++.|.+.+|... ... ...-..+++++.+.+..|. ++...-. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57888888875322 23344567888888888888642 111 1222467888888888744 3322111 23457888
Q ss_pred CEEEcCCCC-CCCCCCccccCCCCCCCEEeccCccccc-c-ccccccCCCCccEEecCCCc-ceeeC--CCcccccCccE
Q 047624 122 SNFDFPVNQ-LQGGLPTDLGFTLPNLERLNVGDNQFTG-P-IPASISNASNLMRLTIPQNG-FSGKV--PSLENLHKLQW 195 (353)
Q Consensus 122 ~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~l~~~~~L~~L~l~~~~-~~~~~--~~~~~~~~L~~ 195 (353)
++++++.+. +.+.-...+..++..++.+..++|.-.. . +...-..++-+.++++.+|. +++.. .....+..++.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 889888776 3322222333345567777767654211 0 11111234556667765653 22221 11345677888
Q ss_pred EEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcC-CccCchhHhhhcccCcEEEecCcccc--CCCchhhcCCCCC
Q 047624 196 VVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNF-GGMLPEAVGNLSTRIRILRVGNNQLF--GNIPSELRNLVNL 272 (353)
Q Consensus 196 l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L 272 (353)
+..+++... .+......-+++.+|+.+.+..|.- ++.....+....+.|+.+++..+... ..+...-.+|+.|
T Consensus 299 l~~s~~t~~----~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 299 LCYSSCTDI----TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred hcccCCCCC----chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 888776542 2235556667889999999988863 32222233333358899999888643 2244455678999
Q ss_pred cEEecCCceeeeec-----C--CCCCCCCcEEEeecccc-cccCChhhhcCCCCcEEecCCCcCC-CC-CCccccccccc
Q 047624 273 ELLELGDNQFTGRI-----P--GRNLTSLAILVFVENML-EGSIPSSLGKCQNLILLDLSNNNLS-GT-IPTEVIGLSSL 342 (353)
Q Consensus 273 ~~L~l~~n~~~~~~-----~--~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~l~l~~n~~~-~~-~~~~~~~l~~l 342 (353)
+.+.+++|...... . ......++.+.+++++. ++...+.+..+++|+.+++.+|+-. .. +-..-.++|++
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNI 454 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccc
Confidence 99999988644222 1 15567888888888865 4444556777889999998888443 22 11222356666
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.18 E-value=3.7e-08 Score=83.37 Aligned_cols=276 Identities=16% Similarity=0.067 Sum_probs=161.2
Q ss_pred cccEeecCCCccccc--ChhhhhccccccEEEeCCCcCC-CC-CchhhcCCCCCCEEEcCCCC-CCCCCCccccCCCCCC
Q 047624 72 SLERLSAAANQFVGQ--IPETLGELKRMRFIGFGANKLS-GE-IPSSIYNLSSLSNFDFPVNQ-LQGGLPTDLGFTLPNL 146 (353)
Q Consensus 72 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~-~~-~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L 146 (353)
.|+.|.++++.-.+. +-....++|+++.|.+.++... .. ....-..+.+|+++++..|. ++......+...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 577777777754321 2223356778888777776632 11 11122345677888777743 3332333344467778
Q ss_pred CEEeccCccc-cc-cccccccCCCCccEEecCCCcceeeC---CCcccccCccEEEEeeccCCCCCcchhHHHhhhcccC
Q 047624 147 ERLNVGDNQF-TG-PIPASISNASNLMRLTIPQNGFSGKV---PSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAY 221 (353)
Q Consensus 147 ~~L~l~~~~~-~~-~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 221 (353)
+++.++.|.- ++ .+......+..++++...+|.-...- ..-..+.-+.++++..+.. ..+...+..-..+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~----lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ----LTDEDLWLIACGCH 294 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc----ccchHHHHHhhhhh
Confidence 8887777643 22 11122233455566655555322110 0112333444454433321 11113344445567
Q ss_pred CccEEEccCCcCCccC-chhHhhhcccCcEEEecCcc-ccCCCchhh-cCCCCCcEEecCCceeeeec----CCCCCCCC
Q 047624 222 GLELLEINTNNFGGML-PEAVGNLSTRIRILRVGNNQ-LFGNIPSEL-RNLVNLELLELGDNQFTGRI----PGRNLTSL 294 (353)
Q Consensus 222 ~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~----~~~~~~~L 294 (353)
.++.+..+++...+.. ...+.....+|+.+-+..|+ +++.-...+ .+++.|+.+++.++...... ....++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 7888888887654332 33444444699999999996 443333333 46889999999998654322 22788999
Q ss_pred cEEEeecccc-cccCCh----hhhcCCCCcEEecCCCcCC-CCCCcccccccccceEEecCCCC
Q 047624 295 AILVFVENML-EGSIPS----SLGKCQNLILLDLSNNNLS-GTIPTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 295 ~~L~l~~~~~-~~~~~~----~~~~~~~L~~l~l~~n~~~-~~~~~~~~~l~~l~~~l~l~~~~ 352 (353)
+.+.+++|.. ++.... +-.+...|+.+.+++|+.+ +...+.+...++| +.+++-+|+
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L-eri~l~~~q 437 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL-ERIELIDCQ 437 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc-ceeeeechh
Confidence 9999999864 433222 2245567999999999655 5566777788899 889888775
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=9.6e-08 Score=68.45 Aligned_cols=103 Identities=24% Similarity=0.293 Sum_probs=68.4
Q ss_pred cCcEEEecCccccCCCch---hhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhcCCCCcEE
Q 047624 247 RIRILRVGNNQLFGNIPS---ELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLILL 321 (353)
Q Consensus 247 ~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 321 (353)
.+..++++.|.+- .+++ .+.....|...++++|.+.+..+. ..+|.+..+++++|.+. .+|..+-.+|.|+.+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3444555555543 2232 233445566666777666643332 44556677777777776 577778888888888
Q ss_pred ecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 322 DLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 322 ~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
.++.|++. ..|+-+.++.++ .+|+..+|++
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l-~~Lds~~na~ 135 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKL-DMLDSPENAR 135 (177)
T ss_pred ccccCccc-cchHHHHHHHhH-HHhcCCCCcc
Confidence 88888888 788888888888 6888877753
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=1.5e-05 Score=69.35 Aligned_cols=57 Identities=18% Similarity=0.118 Sum_probs=32.8
Q ss_pred cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCc
Q 047624 187 LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNN 256 (353)
Q Consensus 187 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 256 (353)
+..+..++.|+++.|.+...+ .-+++|+.|.+++|.-...+|.. +|++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP----------~LP~sLtsL~Lsnc~nLtsLP~~---LP~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP----------VLPNELTEITIENCNNLTTLPGS---IPEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC----------CCCCCCcEEEccCCCCcccCCch---hhhhhhheEccCc
Confidence 344567777777776554321 12235777777765543344433 2357777777776
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=2.5e-06 Score=49.27 Aligned_cols=38 Identities=34% Similarity=0.473 Sum_probs=30.9
Q ss_pred CCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCC
Q 047624 292 TSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSG 330 (353)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 330 (353)
++|++|++++|+++ .+|..+.++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 47899999999998 566678999999999999999883
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=5.1e-06 Score=47.98 Aligned_cols=35 Identities=40% Similarity=0.482 Sum_probs=15.3
Q ss_pred CCcEEecCCceeeeecC-CCCCCCCcEEEeeccccc
Q 047624 271 NLELLELGDNQFTGRIP-GRNLTSLAILVFVENMLE 305 (353)
Q Consensus 271 ~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~~~~~ 305 (353)
+|++|++++|++++..+ ...+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 34444444444444333 344444444444444443
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=4.5e-07 Score=65.10 Aligned_cols=119 Identities=24% Similarity=0.266 Sum_probs=80.8
Q ss_pred HhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC-CCCC
Q 047624 214 VNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG-RNLT 292 (353)
Q Consensus 214 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~ 292 (353)
...+.....|..+++++|.+. .+|..+...++.++++++++|.++ ..|..+..++.|+.+++++|++...... ..+.
T Consensus 46 vy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLI 123 (177)
T ss_pred HHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHH
Confidence 334445556777788888777 455566655568999999999998 7788899999999999999998754332 2355
Q ss_pred CCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcc
Q 047624 293 SLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTE 335 (353)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 335 (353)
++-.|+..+|... .++-.+...+.....++.+++..+.-+..
T Consensus 124 ~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 124 KLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred hHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 6666666666665 45544433334444566777777655543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=7.7e-06 Score=76.91 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=56.5
Q ss_pred ccCCccEEEccCCcCCcc-CchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeec---CCCCCCCC
Q 047624 219 NAYGLELLEINTNNFGGM-LPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRI---PGRNLTSL 294 (353)
Q Consensus 219 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~~L 294 (353)
.+|.|+.|.+.+-.+... +......+ |+|..||++++.++.. .+++.+++|++|.+++-.+.... ..-.+.+|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sF-pNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASF-PNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhcc-CccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 456666666665544322 22222233 3666666666666522 55666666666666665554211 11445666
Q ss_pred cEEEeeccccccc--C----ChhhhcCCCCcEEecCCCcCCCC
Q 047624 295 AILVFVENMLEGS--I----PSSLGKCQNLILLDLSNNNLSGT 331 (353)
Q Consensus 295 ~~L~l~~~~~~~~--~----~~~~~~~~~L~~l~l~~n~~~~~ 331 (353)
+.||++....... + .++-..+|.|+.||.++..+.+.
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 6666665432211 1 12223456666666666655543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=5.7e-05 Score=58.27 Aligned_cols=86 Identities=22% Similarity=0.218 Sum_probs=46.1
Q ss_pred hcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccc-ccccccCCCCccEEecCCCcceeeCCC----ccc
Q 047624 115 IYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGP-IPASISNASNLMRLTIPQNGFSGKVPS----LEN 189 (353)
Q Consensus 115 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~ 189 (353)
+..++.|..|.+..|.+. .+...+...+++|+.|.+.+|.+... ....+..+|+|+.|.+-+|+++....+ +..
T Consensus 60 lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 444455555555555555 34444443455566666666555421 112345566666666666666554333 556
Q ss_pred ccCccEEEEeec
Q 047624 190 LHKLQWVVIAVN 201 (353)
Q Consensus 190 ~~~L~~l~l~~~ 201 (353)
+|+++.|+....
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 666666666543
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=5.5e-05 Score=58.34 Aligned_cols=102 Identities=25% Similarity=0.295 Sum_probs=80.0
Q ss_pred ccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccccC-ChhhhcCCCCcEEe
Q 047624 246 TRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSI-PSSLGKCQNLILLD 322 (353)
Q Consensus 246 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~ 322 (353)
.+...+++++|.+.. ...+..++.|.+|.+.+|+++...+. ..++.|+.|.+.+|.+.... .+.+..+|.|+.|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 467788999998752 24577889999999999999977766 66789999999999886422 23467889999999
Q ss_pred cCCCcCCCCCC---cccccccccceEEecCC
Q 047624 323 LSNNNLSGTIP---TEVIGLSSLSIYLDLSQ 350 (353)
Q Consensus 323 l~~n~~~~~~~---~~~~~l~~l~~~l~l~~ 350 (353)
+-+|+.+..-- .-++.+|++ +.||..+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l-~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSL-RTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcc-eEeehhh
Confidence 99999984322 356789999 8999763
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=0.00025 Score=61.90 Aligned_cols=137 Identities=16% Similarity=0.294 Sum_probs=71.1
Q ss_pred cccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhcccccc
Q 047624 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMR 98 (353)
Q Consensus 19 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 98 (353)
+..++++++|++++|.+.. +| .+. .+|++|.+++|.-...+|..+. ++|++|.+.+|.....+| +.|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP-~LP--~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LP-VLP--NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cC-CCC--CCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccc
Confidence 4456778888888776553 23 121 2577788777644335555442 467777777773222233 3456
Q ss_pred EEEeCCCcCCCCCchhhcCC-CCCCEEEcCCCC-CC-CCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEec
Q 047624 99 FIGFGANKLSGEIPSSIYNL-SSLSNFDFPVNQ-LQ-GGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTI 175 (353)
Q Consensus 99 ~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~-~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 175 (353)
.|.+..+... . +..+ ++|+.|.+..+. .. ...+.. -+++|++|.+.+|... ..|..+ ..+|+.|++
T Consensus 116 ~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~---LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNL---ISPSLKTLSLTGCSNI-ILPEKL--PESLQSITL 184 (426)
T ss_pred eEEeCCCCCc-c----cccCcchHhheeccccccccccccccc---cCCcccEEEecCCCcc-cCcccc--cccCcEEEe
Confidence 6666544332 1 1222 245566654322 11 011111 1356777887776654 233333 246777777
Q ss_pred CCC
Q 047624 176 PQN 178 (353)
Q Consensus 176 ~~~ 178 (353)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 655
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.61 E-value=0.0003 Score=51.88 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=48.0
Q ss_pred cccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhcccc
Q 047624 17 DNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKR 96 (353)
Q Consensus 17 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 96 (353)
..|..+.+|+.+.+.. .+..+...+|.++.+|+.+.+.+. +...-..+|..+++++.+.+.. .+.......+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4566677777777764 344455566777777777777664 4433344566666677777654 222222334555666
Q ss_pred ccEEEeCCCcCCCCCchhhcCCCCCCEEEcCC
Q 047624 97 MRFIGFGANKLSGEIPSSIYNLSSLSNFDFPV 128 (353)
Q Consensus 97 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 128 (353)
++.+.+..+ +.......+... +++.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 666666543 321222234443 555555443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.39 E-value=0.0001 Score=59.21 Aligned_cols=81 Identities=28% Similarity=0.357 Sum_probs=34.1
Q ss_pred cCcEEEecCccccCCCchhhcCCCCCcEEecCCc--eeeeecCC--CCCCCCcEEEeecccccc-cCChhhhcCCCCcEE
Q 047624 247 RIRILRVGNNQLFGNIPSELRNLVNLELLELGDN--QFTGRIPG--RNLTSLAILVFVENMLEG-SIPSSLGKCQNLILL 321 (353)
Q Consensus 247 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~--~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l 321 (353)
.|+.+++.++.++. -..+..+++|++|.++.| ...+.... ..+|+|+++.+++|++.. .-...+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 44444444444431 112334455555555555 22221111 333555555555555431 011223334445555
Q ss_pred ecCCCcCC
Q 047624 322 DLSNNNLS 329 (353)
Q Consensus 322 ~l~~n~~~ 329 (353)
++.+|.-+
T Consensus 122 dl~n~~~~ 129 (260)
T KOG2739|consen 122 DLFNCSVT 129 (260)
T ss_pred hcccCCcc
Confidence 55555444
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.21 E-value=0.0018 Score=47.58 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=63.0
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
|+.+.+.. .+.......|..+++++.+.+..+ +..+...+|.+++.++.+.+.+ .+.......|..+++|+.+.+..
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 34556654 455555678889999999999875 6656677889998999999976 44334456788899999999976
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCC
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSL 121 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 121 (353)
+ +.......+.+. .++.+.+.. .+.......|..+++|
T Consensus 91 ~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 91 N-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred c-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5 443344557777 888888876 3332444456655554
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=1.4e-05 Score=64.69 Aligned_cols=79 Identities=19% Similarity=0.163 Sum_probs=36.4
Q ss_pred CccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecC---CCCCCCCcEEE
Q 047624 222 GLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIP---GRNLTSLAILV 298 (353)
Q Consensus 222 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~ 298 (353)
+.+.|+..+|.+.+. .....+ +.|+.|.++-|+++. ...+..|++|++|+|+.|.+.+... ..++|+|+.||
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kM-p~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKM-PLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhc-ccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 344455555544422 122233 255555555555541 2234455555555555555543221 14445555555
Q ss_pred eeccccc
Q 047624 299 FVENMLE 305 (353)
Q Consensus 299 l~~~~~~ 305 (353)
+..|+-.
T Consensus 95 L~ENPCc 101 (388)
T KOG2123|consen 95 LDENPCC 101 (388)
T ss_pred hccCCcc
Confidence 5554443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.05 E-value=9e-05 Score=68.06 Aligned_cols=110 Identities=13% Similarity=0.070 Sum_probs=49.6
Q ss_pred cccccEEEeCCCcCCCC--CchhhcCCCCCCEEEcCCC-CCCCCC---CccccCCCCCCCEEeccCcc-cccccccccc-
Q 047624 94 LKRMRFIGFGANKLSGE--IPSSIYNLSSLSNFDFPVN-QLQGGL---PTDLGFTLPNLERLNVGDNQ-FTGPIPASIS- 165 (353)
Q Consensus 94 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~- 165 (353)
++.|+.+.+.++.-... .......+++|+.|+++++ ...... .......+++++.++++.+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555432212 2233444566666666542 110000 11122244556666666555 3332222222
Q ss_pred CCCCccEEecCCCc-ceee--CCCcccccCccEEEEeeccC
Q 047624 166 NASNLMRLTIPQNG-FSGK--VPSLENLHKLQWVVIAVNHL 203 (353)
Q Consensus 166 ~~~~L~~L~l~~~~-~~~~--~~~~~~~~~L~~l~l~~~~~ 203 (353)
.+++|++|.+.+|. +++. ......++.|+.++++.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25666666655554 2321 11134556666666665543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.96 E-value=0.00015 Score=66.65 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=52.6
Q ss_pred CCCCCEEeccCcccccc--ccccccCCCCccEEecCCC-cc-eee----CCCcccccCccEEEEeecc-CCCCCcchhHH
Q 047624 143 LPNLERLNVGDNQFTGP--IPASISNASNLMRLTIPQN-GF-SGK----VPSLENLHKLQWVVIAVNH-LGNGEKDDLEF 213 (353)
Q Consensus 143 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-~~-~~~----~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~ 213 (353)
.+.++.+.+.++..... .......++.|+.|+++++ .. ... ......++.++.+++..+. +++. .+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~-----~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI-----GL 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch-----hH
Confidence 45566666655532211 2233445666666666652 11 100 0113444566666666554 2221 11
Q ss_pred HhhhcccCCccEEEccCCc-CCccCchhHhhhcccCcEEEecCccc
Q 047624 214 VNSLVNAYGLELLEINTNN-FGGMLPEAVGNLSTRIRILRVGNNQL 258 (353)
Q Consensus 214 ~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~ 258 (353)
......|++|+.|.+..|. +++.....+....+.|++|++++|..
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 1222236667777665555 44443334443334677777776643
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=6.1e-05 Score=61.06 Aligned_cols=98 Identities=24% Similarity=0.165 Sum_probs=60.1
Q ss_pred cCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccC-ChhhhcCCCCcEEecCC
Q 047624 247 RIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSI-PSSLGKCQNLILLDLSN 325 (353)
Q Consensus 247 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~ 325 (353)
+.+.|+..+|++.+. .....++.||+|.|+-|.++...+...+.+|++|+|-.|.|.+.- ..-+.++|+|+.|+|..
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 556677777766532 344566777777777777776666667777777777666664211 12356667777777777
Q ss_pred CcCCCCCCc-----ccccccccceEEe
Q 047624 326 NNLSGTIPT-----EVIGLSSLSIYLD 347 (353)
Q Consensus 326 n~~~~~~~~-----~~~~l~~l~~~l~ 347 (353)
|+-.+..+. -++-+|+| +.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnL-kKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNL-KKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccc-hhcc
Confidence 766655443 23346666 5554
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.004 Score=50.32 Aligned_cols=61 Identities=25% Similarity=0.395 Sum_probs=28.0
Q ss_pred CCCCCEEeccCc--cccccccccccCCCCccEEecCCCcceee--CCCcccccCccEEEEeeccC
Q 047624 143 LPNLERLNVGDN--QFTGPIPASISNASNLMRLTIPQNGFSGK--VPSLENLHKLQWVVIAVNHL 203 (353)
Q Consensus 143 ~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~ 203 (353)
+++|+.|.++.| .....+....-.+|+|+++++++|++..+ ...+..+++|..|++.+|..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 445555555555 22222332333345555555555555431 12244444555555554443
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.19 E-value=5.1e-06 Score=74.71 Aligned_cols=324 Identities=20% Similarity=0.225 Sum_probs=140.9
Q ss_pred EEEccCCCCccccC----cccccCCCCcEEEcccCcccccC----CcccCCC-CCccEEEecCCccCC----ccCccccC
Q 047624 3 ILWLDNNTYGGQIP----DNISHCVNLESLFLAHNELVGKV----PGKLGSL-SKLRTLAVHHNNLSG----EIPSSFGN 69 (353)
Q Consensus 3 ~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l-~~L~~L~l~~~~~~~----~~~~~~~~ 69 (353)
.++|.+|.+..... ..+...++|..|++++|.+...- -..+... ..+++|++..|.++. .+...+..
T Consensus 91 ~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~ 170 (478)
T KOG4308|consen 91 HLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEK 170 (478)
T ss_pred HhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhc
Confidence 45566666553322 23345566666667666654211 1111121 345555555555442 23344545
Q ss_pred CCcccEeecCCCcccc----cChhhhh----ccccccEEEeCCCcCCCC----CchhhcCCCC-CCEEEcCCCCCCCC--
Q 047624 70 LSSLERLSAAANQFVG----QIPETLG----ELKRMRFIGFGANKLSGE----IPSSIYNLSS-LSNFDFPVNQLQGG-- 134 (353)
Q Consensus 70 l~~L~~L~l~~~~~~~----~~~~~~~----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~-L~~L~l~~~~~~~~-- 134 (353)
..+++.+++..|.+.. ..+..+. ...+++.|.+.++.++.. +...+...++ ++.+++..|.+.+.
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 5666666666665420 1111222 344566666666655421 1122333333 44455555554321
Q ss_pred --CCccccCCC-CCCCEEeccCcccccc----ccccccCCCCccEEecCCCcceeeCC-----CcccccCccEEEEeecc
Q 047624 135 --LPTDLGFTL-PNLERLNVGDNQFTGP----IPASISNASNLMRLTIPQNGFSGKVP-----SLENLHKLQWVVIAVNH 202 (353)
Q Consensus 135 --~~~~~~~~~-~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~l~l~~~~ 202 (353)
....+. .+ +.+++++++.|.+.+. ....+..++.++.+.+..|.+..... .......+..+.+.+++
T Consensus 251 ~~L~~~l~-~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 251 EKLLPCLS-VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG 329 (478)
T ss_pred HHHHHHhc-ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence 111111 12 3455566666655432 22223344555666666555443211 12222223333333222
Q ss_pred CCCCCcchhHHHhhhcccCCccEEEccCCcCCcc----CchhHhhhcccCcEEEecCccccCC----CchhhcCCCCCcE
Q 047624 203 LGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGM----LPEAVGNLSTRIRILRVGNNQLFGN----IPSELRNLVNLEL 274 (353)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~ 274 (353)
......... .......-.......++++...+. ...+.....+.+..+++..+...+. ++..+...+.++.
T Consensus 330 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~ 408 (478)
T KOG4308|consen 330 KGTRGGTSV-LAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEI 408 (478)
T ss_pred ccchhHHHH-HHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhh
Confidence 211111100 000111111111122222222111 1111222223456666666554422 2344556777888
Q ss_pred EecCCceeeeecCC-------CCCCCCcEEEeecccccccCChh----hhcCCCCcEEecCCCcCC
Q 047624 275 LELGDNQFTGRIPG-------RNLTSLAILVFVENMLEGSIPSS----LGKCQNLILLDLSNNNLS 329 (353)
Q Consensus 275 L~l~~n~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~l~l~~n~~~ 329 (353)
++++.|-....... ... .++.++++.++++...... ...-+......+.+|.+.
T Consensus 409 ~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (478)
T KOG4308|consen 409 LDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQRALALNPGILAIRLRGNVIG 473 (478)
T ss_pred hhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchHHHHHHHhcCCCcceeecccCccc
Confidence 88887765533222 333 7777777777776433322 233355666666666655
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.13 E-value=0.0015 Score=31.26 Aligned_cols=19 Identities=53% Similarity=0.751 Sum_probs=11.1
Q ss_pred CcEEecCCCcCCCCCCcccc
Q 047624 318 LILLDLSNNNLSGTIPTEVI 337 (353)
Q Consensus 318 L~~l~l~~n~~~~~~~~~~~ 337 (353)
|++|++++|+++ .+|..|.
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 566666666666 5555444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.26 E-value=0.012 Score=28.04 Aligned_cols=18 Identities=56% Similarity=0.791 Sum_probs=8.1
Q ss_pred ccEEEecCCccCCccCccc
Q 047624 49 LRTLAVHHNNLSGEIPSSF 67 (353)
Q Consensus 49 L~~L~l~~~~~~~~~~~~~ 67 (353)
|++|++++|.++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 344333
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.0023 Score=49.70 Aligned_cols=82 Identities=18% Similarity=0.108 Sum_probs=45.4
Q ss_pred CcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC----CCCCCCcEEEeecc-cccccCChhhhcCCCCcEEe
Q 047624 248 IRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG----RNLTSLAILVFVEN-MLEGSIPSSLGKCQNLILLD 322 (353)
Q Consensus 248 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~l~ 322 (353)
++.++-+++.+..+-.+-+..++.++.|.+.+|...+.... ...++|+.|++++| .|++....++..+++|+.|+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 45555555554433334445555566666666544322111 34566666666655 35655566777777777777
Q ss_pred cCCCcCC
Q 047624 323 LSNNNLS 329 (353)
Q Consensus 323 l~~n~~~ 329 (353)
|.+=+..
T Consensus 183 l~~l~~v 189 (221)
T KOG3864|consen 183 LYDLPYV 189 (221)
T ss_pred hcCchhh
Confidence 7664443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.10 E-value=0.012 Score=25.98 Aligned_cols=14 Identities=64% Similarity=0.767 Sum_probs=6.8
Q ss_pred CCCcEEecCCCcCC
Q 047624 316 QNLILLDLSNNNLS 329 (353)
Q Consensus 316 ~~L~~l~l~~n~~~ 329 (353)
++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666666666655
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.93 E-value=0.00014 Score=65.69 Aligned_cols=165 Identities=19% Similarity=0.202 Sum_probs=87.8
Q ss_pred ccCCCCccEEecCCCcceeeCC-----Ccccc-cCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCcc-
Q 047624 164 ISNASNLMRLTIPQNGFSGKVP-----SLENL-HKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGM- 236 (353)
Q Consensus 164 l~~~~~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~- 236 (353)
+...+.|..|++++|.+.+... .+... +.+++|.+..|.+++.... .....+.....++.++++.|.+...
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~--~l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA--PLAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH--HHHHHHhcccchhHHHHHhcccchhh
Confidence 3344555556666665542111 12222 3455555555555443322 3444555566667777766665422
Q ss_pred ---CchhHhh---hcccCcEEEecCccccCCC----chhhcCCCC-CcEEecCCceeeeecCC------CCC-CCCcEEE
Q 047624 237 ---LPEAVGN---LSTRIRILRVGNNQLFGNI----PSELRNLVN-LELLELGDNQFTGRIPG------RNL-TSLAILV 298 (353)
Q Consensus 237 ---~~~~~~~---~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~n~~~~~~~~------~~~-~~L~~L~ 298 (353)
.+..+.. ...++++|++.+|.++... ...+...++ ++.+++..|.+.+.... ..+ +.++.++
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence 1222222 1246777888877765221 234445555 66688888776533111 223 5667777
Q ss_pred eecccccccC----ChhhhcCCCCcEEecCCCcCCC
Q 047624 299 FVENMLEGSI----PSSLGKCQNLILLDLSNNNLSG 330 (353)
Q Consensus 299 l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~~ 330 (353)
+..|.+++.. ...+..++.++.+.+++|++++
T Consensus 269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 7777776543 3344556677777777777763
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=0.009 Score=46.47 Aligned_cols=87 Identities=22% Similarity=0.185 Sum_probs=61.0
Q ss_pred chhhcCCCCCcEEecCCceeeee--cCCCCCCCCcEEEeecccccc-cCChhh-hcCCCCcEEecCCC-cCCCCCCcccc
Q 047624 263 PSELRNLVNLELLELGDNQFTGR--IPGRNLTSLAILVFVENMLEG-SIPSSL-GKCQNLILLDLSNN-NLSGTIPTEVI 337 (353)
Q Consensus 263 ~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~~~~~~-~~~~~~-~~~~~L~~l~l~~n-~~~~~~~~~~~ 337 (353)
|.....-..++.++-+++.+..+ .....+++++.|.+.+|.-.+ .-.+.+ .-.++|+.|+|++| .||+..-.++.
T Consensus 94 p~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 94 PGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred CCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH
Confidence 33333345688899998876643 334788999999999886532 222222 23589999999999 77876777888
Q ss_pred cccccceEEecCC
Q 047624 338 GLSSLSIYLDLSQ 350 (353)
Q Consensus 338 ~l~~l~~~l~l~~ 350 (353)
.+++| +.|.|.+
T Consensus 174 ~lknL-r~L~l~~ 185 (221)
T KOG3864|consen 174 KLKNL-RRLHLYD 185 (221)
T ss_pred Hhhhh-HHHHhcC
Confidence 88888 7877754
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.10 E-value=0.2 Score=24.78 Aligned_cols=18 Identities=61% Similarity=0.811 Sum_probs=12.3
Q ss_pred CCCcEEecCCCcCCCCCCc
Q 047624 316 QNLILLDLSNNNLSGTIPT 334 (353)
Q Consensus 316 ~~L~~l~l~~n~~~~~~~~ 334 (353)
++|+.|++++|++. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 56777777777777 4443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.10 E-value=0.2 Score=24.78 Aligned_cols=18 Identities=61% Similarity=0.811 Sum_probs=12.3
Q ss_pred CCCcEEecCCCcCCCCCCc
Q 047624 316 QNLILLDLSNNNLSGTIPT 334 (353)
Q Consensus 316 ~~L~~l~l~~n~~~~~~~~ 334 (353)
++|+.|++++|++. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 56777777777777 4443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.52 E-value=0.01 Score=47.22 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=53.7
Q ss_pred ccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccc
Q 047624 18 NISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRM 97 (353)
Q Consensus 18 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 97 (353)
.+..+...+.||++.+.+. -...-|.-+..+..|+++.+++. ..|..++.+..+..+....|... ..|.+++..+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4556666777777766654 22333444556666677766665 56666666666666666665554 456666666777
Q ss_pred cEEEeCCCcCC
Q 047624 98 RFIGFGANKLS 108 (353)
Q Consensus 98 ~~L~l~~~~~~ 108 (353)
+.++..++.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 76666666543
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.23 E-value=0.12 Score=25.03 Aligned_cols=8 Identities=50% Similarity=0.808 Sum_probs=2.5
Q ss_pred cEEecCCc
Q 047624 273 ELLELGDN 280 (353)
Q Consensus 273 ~~L~l~~n 280 (353)
++|++++|
T Consensus 5 ~~L~l~~n 12 (24)
T PF13516_consen 5 ETLDLSNN 12 (24)
T ss_dssp SEEE-TSS
T ss_pred CEEEccCC
Confidence 33333333
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.60 E-value=0.03 Score=44.74 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=72.6
Q ss_pred ccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhc
Q 047624 37 GKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIY 116 (353)
Q Consensus 37 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 116 (353)
.+....+..+.+.+.||++.+... .+-..|..+..+..|+++.+.+. ..|..++....++.+.+..|... ..|..+.
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence 344455667888899999988765 45566777888888999888776 56778888888888888877776 7888888
Q ss_pred CCCCCCEEEcCCCCCC
Q 047624 117 NLSSLSNFDFPVNQLQ 132 (353)
Q Consensus 117 ~l~~L~~L~l~~~~~~ 132 (353)
..+++++++..++.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 8899999988888754
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.94 E-value=1.2 Score=22.06 Aligned_cols=18 Identities=39% Similarity=0.660 Sum_probs=12.6
Q ss_pred CCCcEEecCCCcCCCCCCc
Q 047624 316 QNLILLDLSNNNLSGTIPT 334 (353)
Q Consensus 316 ~~L~~l~l~~n~~~~~~~~ 334 (353)
+.|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35777888888877 5554
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.22 E-value=1.6 Score=39.76 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=7.7
Q ss_pred CCCcEEecCCceeee
Q 047624 270 VNLELLELGDNQFTG 284 (353)
Q Consensus 270 ~~L~~L~l~~n~~~~ 284 (353)
..|++|.+.||++..
T Consensus 270 l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCT 284 (585)
T ss_pred CCHHHeeecCCcccc
Confidence 345555555555543
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.73 E-value=3.5 Score=20.49 Aligned_cols=14 Identities=50% Similarity=0.605 Sum_probs=11.9
Q ss_pred CCCcEEecCCCcCC
Q 047624 316 QNLILLDLSNNNLS 329 (353)
Q Consensus 316 ~~L~~l~l~~n~~~ 329 (353)
++|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 57888999999887
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.55 E-value=3.5 Score=20.78 Aligned_cols=15 Identities=53% Similarity=0.607 Sum_probs=11.9
Q ss_pred CCCcEEecCCCcCCC
Q 047624 316 QNLILLDLSNNNLSG 330 (353)
Q Consensus 316 ~~L~~l~l~~n~~~~ 330 (353)
++|+.|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 578888888888874
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.23 E-value=2.3 Score=38.80 Aligned_cols=77 Identities=23% Similarity=0.246 Sum_probs=49.0
Q ss_pred ccCcEEEecCccccC--CCchhhcCCCCCcEEecCCc--eeeeec--CCCCCCCCcEEEeecccccccCCh---hh----
Q 047624 246 TRIRILRVGNNQLFG--NIPSELRNLVNLELLELGDN--QFTGRI--PGRNLTSLAILVFVENMLEGSIPS---SL---- 312 (353)
Q Consensus 246 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n--~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~~---- 312 (353)
+.+..+++++|.+-. .+-..-...|+|.+|+|++| .+.... +.-....|++|.+.+|++...-.. .+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~ 297 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIR 297 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHH
Confidence 478888899988642 12223345789999999998 444322 224556789999999988643221 11
Q ss_pred hcCCCCcEEe
Q 047624 313 GKCQNLILLD 322 (353)
Q Consensus 313 ~~~~~L~~l~ 322 (353)
+.+|+|..||
T Consensus 298 ~~FPKL~~LD 307 (585)
T KOG3763|consen 298 ELFPKLLRLD 307 (585)
T ss_pred Hhcchheeec
Confidence 3467776643
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=63.63 E-value=5.4 Score=19.56 Aligned_cols=15 Identities=47% Similarity=0.716 Sum_probs=11.6
Q ss_pred CCCCcEEecCCCc-CC
Q 047624 315 CQNLILLDLSNNN-LS 329 (353)
Q Consensus 315 ~~~L~~l~l~~n~-~~ 329 (353)
+++|++|+|++|+ ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4688899999884 55
No 89
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=31.24 E-value=85 Score=17.67 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=3.3
Q ss_pred cCcEEEe
Q 047624 247 RIRILRV 253 (353)
Q Consensus 247 ~L~~L~l 253 (353)
+++.|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 4444444
No 90
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=26.11 E-value=42 Score=16.52 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=5.1
Q ss_pred CcEEEecCccc
Q 047624 248 IRILRVGNNQL 258 (353)
Q Consensus 248 L~~L~l~~~~~ 258 (353)
||+|.+....+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 44455544443
Done!