Query 047624
Match_columns 353
No_of_seqs 158 out of 2453
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 23:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.4E-42 8.2E-47 330.3 26.7 342 3-353 273-692 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-42 4.1E-47 332.4 23.9 344 1-353 296-716 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 2.4E-39 8.1E-44 292.6 24.0 351 1-353 32-407 (455)
4 3t6q_A CD180 antigen; protein- 100.0 1.1E-38 3.9E-43 298.2 28.4 350 1-353 35-488 (606)
5 4eco_A Uncharacterized protein 100.0 3.8E-39 1.3E-43 301.7 24.6 335 10-353 194-578 (636)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-38 3.8E-43 298.3 27.5 179 167-353 375-557 (606)
7 4eco_A Uncharacterized protein 100.0 2.6E-39 8.8E-44 302.8 20.5 334 2-351 84-546 (636)
8 3t6q_A CD180 antigen; protein- 100.0 4.7E-38 1.6E-42 294.1 28.7 346 1-353 59-512 (606)
9 4ecn_A Leucine-rich repeat pro 100.0 1E-37 3.6E-42 297.2 26.8 329 15-353 440-818 (876)
10 4ecn_A Leucine-rich repeat pro 100.0 7.6E-38 2.6E-42 298.1 24.4 335 1-353 450-839 (876)
11 2z63_A TOLL-like receptor 4, v 100.0 1.5E-37 5.1E-42 288.7 23.3 349 1-353 30-530 (570)
12 2z7x_B TOLL-like receptor 1, v 100.0 4E-37 1.4E-41 282.6 25.0 336 1-353 23-480 (520)
13 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-36 4.4E-41 284.3 26.4 350 1-353 34-533 (606)
14 1ziw_A TOLL-like receptor 3; i 100.0 6.2E-36 2.1E-40 283.3 29.5 105 248-353 383-516 (680)
15 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-35 5.1E-40 280.7 31.4 344 1-353 51-548 (680)
16 3v47_A TOLL-like receptor 5B a 100.0 7.2E-36 2.5E-40 269.8 27.7 343 3-353 14-383 (455)
17 2z81_A CD282 antigen, TOLL-lik 100.0 8.3E-37 2.8E-41 282.4 21.7 345 1-353 28-509 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 9.8E-36 3.4E-40 273.3 25.0 336 2-353 3-456 (520)
19 3j0a_A TOLL-like receptor 5; m 100.0 5.8E-36 2E-40 289.0 24.5 132 1-132 26-161 (844)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-35 6.3E-40 273.8 26.8 156 188-353 350-509 (562)
21 2id5_A Lingo-1, leucine rich r 100.0 6.8E-35 2.3E-39 264.9 27.4 315 3-353 15-332 (477)
22 4fmz_A Internalin; leucine ric 100.0 3.5E-34 1.2E-38 249.6 27.7 307 18-353 39-345 (347)
23 3j0a_A TOLL-like receptor 5; m 100.0 5.3E-35 1.8E-39 282.3 24.7 345 1-353 50-516 (844)
24 1o6v_A Internalin A; bacterial 100.0 2.8E-34 9.6E-39 259.8 27.8 320 1-353 48-387 (466)
25 3o6n_A APL1; leucine-rich repe 100.0 5.6E-34 1.9E-38 252.2 27.0 308 21-353 43-351 (390)
26 1o6v_A Internalin A; bacterial 100.0 1.7E-33 5.7E-38 254.7 29.8 303 20-353 43-365 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.8E-34 1.6E-38 264.3 26.2 337 2-353 34-485 (562)
28 2z63_A TOLL-like receptor 4, v 100.0 2.1E-34 7.2E-39 267.5 23.3 327 1-334 54-536 (570)
29 4g8a_A TOLL-like receptor 4; l 100.0 5.6E-34 1.9E-38 268.0 26.3 351 1-353 54-579 (635)
30 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-34 9.2E-39 265.6 23.1 343 4-353 10-422 (549)
31 3oja_B Anopheles plasmodium-re 100.0 2.6E-33 8.9E-38 260.8 27.2 308 21-353 49-357 (597)
32 2id5_A Lingo-1, leucine rich r 100.0 6.2E-34 2.1E-38 258.6 22.4 297 1-305 34-333 (477)
33 4fmz_A Internalin; leucine ric 100.0 4.8E-32 1.6E-36 236.2 27.9 299 1-329 46-346 (347)
34 3bz5_A Internalin-J, INLJ; leu 100.0 2.6E-31 8.8E-36 238.7 24.8 294 1-330 44-353 (457)
35 4g8a_A TOLL-like receptor 4; l 100.0 9.1E-31 3.1E-35 246.1 27.5 328 23-353 52-554 (635)
36 3o6n_A APL1; leucine-rich repe 100.0 3.2E-31 1.1E-35 234.5 22.7 286 45-353 43-330 (390)
37 3bz5_A Internalin-J, INLJ; leu 100.0 7.6E-31 2.6E-35 235.7 24.9 306 12-353 31-351 (457)
38 3oja_B Anopheles plasmodium-re 100.0 1.8E-30 6.3E-35 241.6 22.7 286 45-353 49-336 (597)
39 1jl5_A Outer protein YOPM; leu 100.0 1.9E-29 6.5E-34 226.4 28.2 262 47-353 131-408 (454)
40 1z7x_W Ribonuclease inhibitor; 100.0 3.5E-34 1.2E-38 259.3 -4.0 281 48-330 86-412 (461)
41 1xku_A Decorin; proteoglycan, 100.0 1.2E-29 4E-34 219.4 24.4 288 24-352 32-330 (330)
42 2ft3_A Biglycan; proteoglycan, 100.0 6.6E-30 2.2E-34 221.1 22.2 288 24-352 34-331 (332)
43 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-30 4.8E-35 223.1 17.1 248 47-352 50-302 (313)
44 1ogq_A PGIP-2, polygalacturona 100.0 7.7E-31 2.6E-35 224.7 14.9 248 23-281 50-302 (313)
45 2ft3_A Biglycan; proteoglycan, 100.0 8E-30 2.7E-34 220.6 21.4 262 48-353 34-306 (332)
46 1xku_A Decorin; proteoglycan, 100.0 2.1E-29 7.1E-34 217.8 23.5 285 1-327 33-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 7.5E-33 2.6E-37 250.5 0.2 348 1-353 5-410 (461)
48 1jl5_A Outer protein YOPM; leu 100.0 2.3E-29 7.9E-34 225.9 20.8 309 1-353 13-369 (454)
49 2z80_A TOLL-like receptor 2, v 100.0 7.4E-27 2.5E-31 203.7 21.2 281 19-332 27-317 (353)
50 2z80_A TOLL-like receptor 2, v 100.0 2.4E-27 8.2E-32 206.8 17.3 274 3-285 35-316 (353)
51 2z66_A Variable lymphocyte rec 99.9 1.5E-26 5.1E-31 197.8 18.2 226 120-353 29-260 (306)
52 4fcg_A Uncharacterized protein 99.9 2.3E-26 7.8E-31 198.1 18.5 230 94-352 80-312 (328)
53 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-25 5.7E-30 206.9 23.4 268 24-340 41-308 (622)
54 1ozn_A Reticulon 4 receptor; N 99.9 7.6E-26 2.6E-30 191.4 19.4 225 2-236 14-240 (285)
55 3ogk_B Coronatine-insensitive 99.9 2.3E-28 7.8E-33 228.0 2.7 344 1-353 114-525 (592)
56 2z66_A Variable lymphocyte rec 99.9 4.1E-26 1.4E-30 195.0 16.3 229 23-283 28-261 (306)
57 3g06_A SSPH2 (leucine-rich rep 99.9 7.9E-25 2.7E-29 202.3 25.8 257 47-353 40-296 (622)
58 4fcg_A Uncharacterized protein 99.9 5.6E-26 1.9E-30 195.6 16.4 225 47-282 81-313 (328)
59 3zyi_A Leucine-rich repeat-con 99.9 6.7E-25 2.3E-29 197.6 23.5 248 24-283 55-303 (452)
60 3zyj_A Leucine-rich repeat-con 99.9 4.7E-25 1.6E-29 197.9 22.3 247 25-283 45-292 (440)
61 3ogk_B Coronatine-insensitive 99.9 8.4E-28 2.9E-32 224.1 4.2 344 1-353 75-500 (592)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-25 4.3E-30 190.0 15.9 268 26-352 14-285 (285)
63 3o53_A Protein LRIM1, AGAP0063 99.9 3.8E-25 1.3E-29 189.8 16.1 254 76-349 15-270 (317)
64 3zyi_A Leucine-rich repeat-con 99.9 2.7E-24 9.4E-29 193.6 20.9 200 2-204 78-279 (452)
65 3zyj_A Leucine-rich repeat-con 99.9 3.5E-24 1.2E-28 192.3 20.7 244 4-259 48-292 (440)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-26 3.9E-31 199.3 3.8 235 4-283 15-250 (317)
67 2p1m_B Transport inhibitor res 99.9 1.2E-26 4.1E-31 216.5 3.1 349 1-353 107-518 (594)
68 1wwl_A Monocyte differentiatio 99.9 2.1E-25 7.1E-30 191.0 9.2 248 68-353 40-308 (312)
69 3oja_A Leucine-rich immune mol 99.9 7E-24 2.4E-28 192.1 17.4 215 94-352 33-248 (487)
70 2o6q_A Variable lymphocyte rec 99.9 7.8E-22 2.7E-26 165.3 22.6 199 2-204 19-218 (270)
71 3oja_A Leucine-rich immune mol 99.9 4.7E-24 1.6E-28 193.2 9.7 237 21-278 32-270 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 1.6E-22 5.6E-27 170.0 16.6 224 4-237 12-240 (276)
73 2p1m_B Transport inhibitor res 99.9 1.2E-24 4.1E-29 203.0 3.3 180 166-353 287-493 (594)
74 2z62_A TOLL-like receptor 4, v 99.9 6.2E-22 2.1E-26 166.5 19.2 220 29-260 13-238 (276)
75 1wwl_A Monocyte differentiatio 99.9 7.7E-23 2.6E-27 175.0 13.4 223 2-235 66-310 (312)
76 2o6q_A Variable lymphocyte rec 99.9 2E-21 6.8E-26 162.8 19.8 182 1-183 39-220 (270)
77 1p9a_G Platelet glycoprotein I 99.9 2.5E-21 8.4E-26 163.6 18.8 200 116-329 7-208 (290)
78 2ast_B S-phase kinase-associat 99.9 4.1E-23 1.4E-27 178.9 6.8 251 2-266 50-313 (336)
79 1p9a_G Platelet glycoprotein I 99.9 5.4E-21 1.9E-25 161.5 19.2 195 2-203 13-207 (290)
80 3goz_A Leucine-rich repeat-con 99.9 2E-22 7E-27 176.0 10.2 256 29-307 4-299 (362)
81 3goz_A Leucine-rich repeat-con 99.9 3.6E-23 1.2E-27 180.8 5.4 256 3-285 2-299 (362)
82 3rfs_A Internalin B, repeat mo 99.9 1.1E-21 3.9E-26 164.4 13.5 179 19-202 37-216 (272)
83 2xwt_C Thyrotropin receptor; s 99.9 1.1E-21 3.9E-26 161.2 12.6 196 23-231 31-236 (239)
84 2ast_B S-phase kinase-associat 99.9 6.5E-23 2.2E-27 177.6 4.2 222 25-280 49-282 (336)
85 2ca6_A RAN GTPase-activating p 99.9 9.6E-23 3.3E-27 179.8 4.3 248 62-333 23-320 (386)
86 3m19_A Variable lymphocyte rec 99.9 4.1E-20 1.4E-24 153.1 19.2 179 24-206 15-194 (251)
87 2ca6_A RAN GTPase-activating p 99.9 9.8E-23 3.4E-27 179.8 3.0 251 15-284 24-317 (386)
88 4glp_A Monocyte differentiatio 99.9 5.3E-21 1.8E-25 163.5 13.4 203 22-235 90-308 (310)
89 3rfs_A Internalin B, repeat mo 99.8 6.2E-20 2.1E-24 153.8 19.1 191 1-202 43-233 (272)
90 1h6u_A Internalin H; cell adhe 99.8 6.8E-20 2.3E-24 156.3 19.6 194 19-234 37-230 (308)
91 1h6u_A Internalin H; cell adhe 99.8 1.3E-20 4.4E-25 160.7 13.8 211 101-335 25-235 (308)
92 4glp_A Monocyte differentiatio 99.8 1.7E-20 5.6E-25 160.4 13.6 207 94-330 90-308 (310)
93 3m19_A Variable lymphocyte rec 99.8 6.5E-19 2.2E-23 145.8 19.4 178 2-183 17-194 (251)
94 2xwt_C Thyrotropin receptor; s 99.8 1.6E-19 5.4E-24 148.4 14.7 197 48-257 32-237 (239)
95 2o6s_A Variable lymphocyte rec 99.8 1.5E-18 5.1E-23 139.4 13.0 179 2-191 10-189 (208)
96 4ay9_X Follicle-stimulating ho 99.8 3E-18 1E-22 148.9 14.9 239 50-326 12-256 (350)
97 4ay9_X Follicle-stimulating ho 99.8 8.4E-18 2.9E-22 146.1 17.2 197 3-204 13-215 (350)
98 2o6s_A Variable lymphocyte rec 99.8 1E-17 3.4E-22 134.6 14.3 170 26-205 10-179 (208)
99 1h6t_A Internalin B; cell adhe 99.8 2.3E-17 7.8E-22 139.4 16.9 174 19-206 42-215 (291)
100 2v9t_B SLIT homolog 2 protein 99.8 2.9E-17 9.8E-22 132.9 16.1 153 26-182 14-166 (220)
101 2xot_A Amphoterin-induced prot 99.7 1.2E-17 4.2E-22 145.6 14.1 177 2-182 21-203 (361)
102 3cvr_A Invasion plasmid antige 99.7 1.3E-17 4.6E-22 152.4 14.5 189 96-341 60-255 (571)
103 1h6t_A Internalin B; cell adhe 99.7 4.5E-17 1.6E-21 137.5 16.7 172 44-235 43-214 (291)
104 3e6j_A Variable lymphocyte rec 99.7 1.3E-16 4.5E-21 129.9 16.8 153 25-182 21-173 (229)
105 4ezg_A Putative uncharacterize 99.7 7.9E-17 2.7E-21 128.1 15.1 155 19-182 40-195 (197)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-16 4.1E-21 129.2 15.7 153 26-182 14-167 (220)
107 3cvr_A Invasion plasmid antige 99.7 2.2E-16 7.4E-21 144.4 17.9 188 24-245 60-254 (571)
108 4ezg_A Putative uncharacterize 99.7 4.5E-17 1.5E-21 129.5 11.4 154 44-205 41-195 (197)
109 2v9t_B SLIT homolog 2 protein 99.7 9.1E-17 3.1E-21 129.9 13.3 153 2-158 14-166 (220)
110 1m9s_A Internalin B; cell inva 99.7 1.2E-16 4.2E-21 147.6 15.5 172 20-205 40-211 (605)
111 1m9s_A Internalin B; cell inva 99.7 1E-16 3.5E-21 148.1 14.6 190 96-306 22-211 (605)
112 3e6j_A Variable lymphocyte rec 99.7 2.4E-16 8.2E-21 128.3 14.4 153 2-159 22-174 (229)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 1.9E-16 6.4E-21 128.1 13.2 153 2-158 14-167 (220)
114 2xot_A Amphoterin-induced prot 99.7 1E-16 3.5E-21 139.7 11.3 156 1-157 41-202 (361)
115 1xeu_A Internalin C; cellular 99.7 4.6E-17 1.6E-21 135.3 6.7 169 144-331 19-187 (263)
116 1xeu_A Internalin C; cellular 99.7 2.3E-16 7.7E-21 131.2 9.9 169 22-205 18-186 (263)
117 2ell_A Acidic leucine-rich nuc 99.7 6E-16 2.1E-20 119.7 10.3 133 22-157 23-160 (168)
118 2je0_A Acidic leucine-rich nuc 99.6 8.5E-16 2.9E-20 116.3 9.0 128 22-152 16-148 (149)
119 1w8a_A SLIT protein; signaling 99.6 3.8E-15 1.3E-19 117.7 12.2 128 2-132 11-139 (192)
120 3sb4_A Hypothetical leucine ri 99.6 7.1E-15 2.4E-19 126.5 13.9 286 46-347 24-327 (329)
121 1dce_A Protein (RAB geranylger 99.6 5E-18 1.7E-22 155.9 -6.7 198 20-228 346-567 (567)
122 1w8a_A SLIT protein; signaling 99.6 3.5E-15 1.2E-19 117.9 10.2 108 222-330 30-140 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 9.1E-15 3.1E-19 113.0 10.9 136 46-184 23-163 (168)
124 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4.1E-19 114.8 11.5 124 224-353 13-138 (193)
125 2wfh_A SLIT homolog 2 protein 99.6 3E-14 1E-18 112.6 13.0 127 26-157 13-139 (193)
126 2je0_A Acidic leucine-rich nuc 99.6 1E-14 3.5E-19 110.3 9.7 126 47-176 17-148 (149)
127 1dce_A Protein (RAB geranylger 99.6 4.5E-16 1.5E-20 142.9 2.5 200 142-348 347-567 (567)
128 3sb4_A Hypothetical leucine ri 99.6 3.6E-14 1.2E-18 122.1 13.2 217 1-227 51-327 (329)
129 2o6r_A Variable lymphocyte rec 99.6 9.1E-14 3.1E-18 108.3 13.9 110 47-157 28-137 (177)
130 2o6r_A Variable lymphocyte rec 99.6 5.8E-14 2E-18 109.5 12.7 105 247-352 29-135 (177)
131 1a9n_A U2A', U2A'; complex (nu 99.5 1.6E-14 5.4E-19 112.5 7.2 129 217-352 15-151 (176)
132 4fs7_A Uncharacterized protein 99.5 1.2E-12 4.2E-17 115.4 19.3 156 14-177 62-217 (394)
133 4b8c_D Glucose-repressible alc 99.5 7.7E-15 2.6E-19 138.9 5.2 174 2-182 176-355 (727)
134 1a9n_A U2A', U2A'; complex (nu 99.5 9.2E-14 3.1E-18 108.2 9.4 134 18-157 14-153 (176)
135 4fs7_A Uncharacterized protein 99.5 1.9E-12 6.4E-17 114.2 18.8 318 2-346 74-393 (394)
136 4b8c_D Glucose-repressible alc 99.5 1.9E-14 6.4E-19 136.2 5.9 156 23-185 173-333 (727)
137 4fdw_A Leucine rich hypothetic 99.5 2.7E-12 9.3E-17 112.8 17.9 253 11-283 124-383 (401)
138 4fdw_A Leucine rich hypothetic 99.4 5.4E-12 1.8E-16 110.9 18.1 269 20-304 110-382 (401)
139 1ds9_A Outer arm dynein; leuci 99.4 7.4E-16 2.5E-20 122.6 -7.7 151 166-330 16-186 (198)
140 3g39_A Variable lymphocyte rec 99.4 1.6E-12 5.5E-17 100.3 10.0 106 222-331 10-117 (170)
141 3g39_A Variable lymphocyte rec 99.4 2.9E-12 1E-16 98.9 11.2 104 26-132 12-115 (170)
142 1ds9_A Outer arm dynein; leuci 99.4 4.8E-15 1.6E-19 117.8 -5.6 110 42-157 43-153 (198)
143 2r9u_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 99.0 10.0 107 223-334 14-122 (174)
144 2r9u_A Variable lymphocyte rec 99.4 5.7E-12 1.9E-16 97.6 11.2 104 26-132 15-118 (174)
145 3un9_A NLR family member X1; l 99.4 7.9E-14 2.7E-18 121.4 0.5 167 167-338 71-261 (372)
146 4gt6_A Cell surface protein; l 99.3 2.8E-09 9.5E-14 93.9 23.8 315 16-352 56-389 (394)
147 3un9_A NLR family member X1; l 99.2 3.4E-13 1.2E-17 117.4 -1.6 184 143-329 71-283 (372)
148 4gt6_A Cell surface protein; l 99.1 3.4E-09 1.2E-13 93.3 18.9 297 11-328 75-390 (394)
149 2ifg_A High affinity nerve gro 99.1 2.3E-10 7.7E-15 99.1 10.2 101 225-329 12-116 (347)
150 2ifg_A High affinity nerve gro 99.1 3.3E-10 1.1E-14 98.1 9.8 104 3-109 12-117 (347)
151 2ra8_A Uncharacterized protein 99.0 2E-10 6.9E-15 99.2 5.5 61 269-329 251-320 (362)
152 4h09_A Hypothetical leucine ri 98.9 2.2E-07 7.5E-12 81.3 21.7 302 17-339 40-355 (379)
153 2ra8_A Uncharacterized protein 98.9 8E-09 2.7E-13 89.2 9.8 59 113-175 166-226 (362)
154 4h09_A Hypothetical leucine ri 98.7 1.6E-06 5.4E-11 75.8 20.1 289 42-351 41-343 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 2.5E-09 8.6E-14 83.5 -0.7 117 212-329 27-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 1.9E-08 6.4E-13 78.5 2.7 115 187-304 32-163 (185)
157 3e4g_A ATP synthase subunit S, 98.3 3.2E-07 1.1E-11 69.8 3.7 84 47-130 61-150 (176)
158 3e4g_A ATP synthase subunit S, 98.3 7.2E-07 2.5E-11 67.8 4.8 84 23-106 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.5E-12 77.0 1.2 38 247-284 171-210 (267)
160 3rw6_A Nuclear RNA export fact 98.1 1.7E-06 5.9E-11 70.9 4.3 79 267-348 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 3.8E-05 1.3E-09 59.5 4.7 113 215-328 35-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 7E-06 2.4E-10 63.7 -0.1 106 246-352 41-168 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0016 5.4E-08 47.0 5.5 56 274-329 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.9 0.002 6.9E-08 46.4 5.8 55 296-353 12-67 (130)
165 2lz0_A Uncharacterized protein 72.9 5.4 0.00018 26.7 4.4 47 9-56 6-52 (100)
166 2lz0_A Uncharacterized protein 69.9 6.5 0.00022 26.3 4.3 48 33-81 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-42 Score=330.31 Aligned_cols=342 Identities=34% Similarity=0.550 Sum_probs=191.1
Q ss_pred EEEccCCCCccccCcccccC-CCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCcc-ccCCCcccEeecCC
Q 047624 3 ILWLDNNTYGGQIPDNISHC-VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSS-FGNLSSLERLSAAA 80 (353)
Q Consensus 3 ~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~ 80 (353)
+|++++|.+++.+|..+... ++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|.. +..+++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 34444444433334333332 44444444444444344444444444444444444443333332 44444444444444
Q ss_pred CcccccChhhhhccc-cccEEEeCCCcCCCCCchhhcC--CCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccc
Q 047624 81 NQFVGQIPETLGELK-RMRFIGFGANKLSGEIPSSIYN--LSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFT 157 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 157 (353)
|.+.+..|..+..++ +|+.|++++|.+.+..+..+.. +++|++|++++|.+.+.++..+. .+++|+.|++++|.+.
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLS 431 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSEEE
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCCccc
Confidence 444434444444433 4444444444443333333332 34455555555544434444433 4555666666666555
Q ss_pred ccccccccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCcc
Q 047624 158 GPIPASISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGM 236 (353)
Q Consensus 158 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 236 (353)
...|..+..+++|++|++++|.+.+..+. +..+++|+.|+++.|.+.+. .+..+..+++|+.|++++|.+.+.
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~------~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE------IPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC------CCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc------CCHHHhcCCCCCEEEccCCccCCc
Confidence 55555555566666666666655543332 55566666666666655542 233456677777777777777777
Q ss_pred CchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC----------------------------
Q 047624 237 LPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG---------------------------- 288 (353)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---------------------------- 288 (353)
.|.++..++ +|++|++++|.+.+.+|..+..+++|++|++++|++.+..|.
T Consensus 506 ~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 506 IPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CCGGGGGCT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred CChHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 777777764 777777777777767777777777777777777776644331
Q ss_pred --------------------------------------------CCCCCCcEEEeecccccccCChhhhcCCCCcEEecC
Q 047624 289 --------------------------------------------RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLS 324 (353)
Q Consensus 289 --------------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 324 (353)
..+++|+.|++++|++++.+|..++.++.|+.|+++
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 664 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECC
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCc
Confidence 113456677777777776677777777777777777
Q ss_pred CCcCCCCCCcccccccccceEEecCCCCC
Q 047624 325 NNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 325 ~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+|++++.+|..|..+++| ++|||++|++
T Consensus 665 ~N~l~g~ip~~l~~L~~L-~~LdLs~N~l 692 (768)
T 3rgz_A 665 HNDISGSIPDEVGDLRGL-NILDLSSNKL 692 (768)
T ss_dssp SSCCCSCCCGGGGGCTTC-CEEECCSSCC
T ss_pred CCccCCCCChHHhCCCCC-CEEECCCCcc
Confidence 777776777777777777 6777776654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-42 Score=332.38 Aligned_cols=344 Identities=32% Similarity=0.533 Sum_probs=295.2
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcc-cCCCCCccEEEecCCccCCccCccccCCC-cccEeec
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGK-LGSLSKLRTLAVHHNNLSGEIPSSFGNLS-SLERLSA 78 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l 78 (353)
|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+.+|..+..++ +|++|++
T Consensus 296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375 (768)
T ss_dssp CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence 688999999999999999999999999999999987555654 89999999999999999888888888887 8999999
Q ss_pred CCCcccccChhhhhc--cccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccc
Q 047624 79 AANQFVGQIPETLGE--LKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQF 156 (353)
Q Consensus 79 ~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 156 (353)
++|.+.+..+..+.. +++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNML 454 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCC
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCCcc
Confidence 999988777777765 77899999999988878888888889999999999988767776665 688899999999988
Q ss_pred cccccccccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCc
Q 047624 157 TGPIPASISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGG 235 (353)
Q Consensus 157 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 235 (353)
...++..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~------~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE------IPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC------CCGGGGGCTTCCEEECCSSCCEE
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc------CChHHhcCCCCCEEECCCCcccC
Confidence 877888888889999999999988865444 78888999999998887753 33456678889999999998888
Q ss_pred cCchhHhhhcccCcEEEecCccccCCCchhh-------------------------------------------------
Q 047624 236 MLPEAVGNLSTRIRILRVGNNQLFGNIPSEL------------------------------------------------- 266 (353)
Q Consensus 236 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------------------------------------- 266 (353)
..|..+..++ +|+.|++++|.+++.+|..+
T Consensus 529 ~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 529 NIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp ECCGGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred cCCHHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 8888888875 89999999888776655433
Q ss_pred ---------------------cCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhcCCCCcEEec
Q 047624 267 ---------------------RNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDL 323 (353)
Q Consensus 267 ---------------------~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 323 (353)
..+++|++|++++|.+++.+|. +.+++|+.|++++|.+++.+|..++.+++|+.|+|
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence 3356789999999999987775 67899999999999999999999999999999999
Q ss_pred CCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 324 SNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 324 ~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
++|++++.+|..+..+++| ++|||++|++
T Consensus 688 s~N~l~g~ip~~l~~l~~L-~~L~ls~N~l 716 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALTML-TEIDLSNNNL 716 (768)
T ss_dssp CSSCCEECCCGGGGGCCCC-SEEECCSSEE
T ss_pred CCCcccCcCChHHhCCCCC-CEEECcCCcc
Confidence 9999999999999999999 8999999974
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-39 Score=292.64 Aligned_cols=351 Identities=17% Similarity=0.163 Sum_probs=266.2
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCccc-ccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELV-GKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAA 79 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (353)
+++|++++|.+++..+..+..+++|++|++++|.+. .+.+..|.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence 577888888888777778888888888888888765 3445667888888888888888876667788888888888888
Q ss_pred CCcccccChhh--hhccccccEEEeCCCcCCCCCchh-hcCCCCCCEEEcCCCCCCCCCCccccC-CCCCCCEEeccCcc
Q 047624 80 ANQFVGQIPET--LGELKRMRFIGFGANKLSGEIPSS-IYNLSSLSNFDFPVNQLQGGLPTDLGF-TLPNLERLNVGDNQ 155 (353)
Q Consensus 80 ~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 155 (353)
+|.+.+..+.. +..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+....+..+.. ....++.++++++.
T Consensus 112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~ 191 (455)
T 3v47_A 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191 (455)
T ss_dssp TSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred CCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc
Confidence 88876544444 777888888888888887655554 677888888888888876544444331 12567788888877
Q ss_pred cccccccc--------ccCCCCccEEecCCCcceeeCCC-c---ccccCccEEEEeeccCCCCCcchhHH----Hhhh--
Q 047624 156 FTGPIPAS--------ISNASNLMRLTIPQNGFSGKVPS-L---ENLHKLQWVVIAVNHLGNGEKDDLEF----VNSL-- 217 (353)
Q Consensus 156 ~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~-~---~~~~~L~~l~l~~~~~~~~~~~~~~~----~~~l-- 217 (353)
+....+.. +..+++|++|++++|.+.+..+. + ...++++.+.++.+...+.......+ ...+
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (455)
T 3v47_A 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271 (455)
T ss_dssp CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG
T ss_pred ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccc
Confidence 76432222 23457788888888877654332 2 22377888888776543321111000 0011
Q ss_pred cccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCc
Q 047624 218 VNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLA 295 (353)
Q Consensus 218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~ 295 (353)
...++++.+++++|.+.+..+.++..++ +|++|++++|.+.+..+..+.++++|++|++++|.+.+..+. ..+++|+
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred ccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 1236899999999999988888888885 999999999999877788999999999999999999876543 6789999
Q ss_pred EEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 296 ILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 296 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+|++++|.+.+..|..+..+++|+.|++++|++++..+..+..+++| ++|+|++|++
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~l 407 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL-QKIWLHTNPW 407 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCB
T ss_pred EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc-cEEEccCCCc
Confidence 99999999998889999999999999999999997666788899999 8999999985
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-38 Score=298.22 Aligned_cols=350 Identities=20% Similarity=0.177 Sum_probs=198.6
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
+++|++++|.+++..+..|.++++|++|++++|.+....|..|.++++|++|++++|.+.+..|..|..+++|++|++++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 114 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence 46778888888776677778888888888888877766777777888888888888777766667777777777777777
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCC--------------
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNL-------------- 146 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------------- 146 (353)
|.+....+..+..+++|+.|++++|.+.+.....+..+++|++|++++|.+....+..+. .+++|
T Consensus 115 n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp SCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECTTCCCCE
T ss_pred cCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecCCCccCc
Confidence 777654455566666777777776666542222233355555555555544311111111 22222
Q ss_pred ---------------------------------------------------------------CEEeccCcccccccccc
Q 047624 147 ---------------------------------------------------------------ERLNVGDNQFTGPIPAS 163 (353)
Q Consensus 147 ---------------------------------------------------------------~~L~l~~~~~~~~~~~~ 163 (353)
+.+++++|.+....+..
T Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence 22333333332222223
Q ss_pred ccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchh------------------HH-HhhhcccCCcc
Q 047624 164 ISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDL------------------EF-VNSLVNAYGLE 224 (353)
Q Consensus 164 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~------------------~~-~~~l~~~~~L~ 224 (353)
+..+++|++|++++|.++..+..+..+++|++|++++|.+.+.....+ .. ...+..+++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 444555555555555555444445555555555555554432111000 00 01233445555
Q ss_pred EEEccCCcCCccC--chhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecC---CCCCCCCcEEEe
Q 047624 225 LLEINTNNFGGML--PEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIP---GRNLTSLAILVF 299 (353)
Q Consensus 225 ~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l 299 (353)
+|++++|.+.+.. +..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ...+++|+.|++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCT-TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred EEECCCCccccccCcchhcccCC-CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 5555555544332 33344442 56666666665554455556666666666666666654433 244566666666
Q ss_pred ecccccccCChhhhcCCCCcEEecCCCcCCC---CCCcccccccccceEEecCCCCC
Q 047624 300 VENMLEGSIPSSLGKCQNLILLDLSNNNLSG---TIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~---~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
++|.+.+..+..+..+++|+.|++++|++++ ..+..+..+++| ++|++++|+|
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L-~~L~Ls~n~l 488 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL-EILVLSFCDL 488 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC-CEEECTTSCC
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc-cEEECCCCcc
Confidence 6666665556666666666666666666654 122456666666 6677666654
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.8e-39 Score=301.71 Aligned_cols=335 Identities=19% Similarity=0.299 Sum_probs=249.0
Q ss_pred CCccccCcccccCCCCcEEEcccCccccc-----------------CCcccC--CCCCccEEEecCCccCCccCccccCC
Q 047624 10 TYGGQIPDNISHCVNLESLFLAHNELVGK-----------------VPGKLG--SLSKLRTLAVHHNNLSGEIPSSFGNL 70 (353)
Q Consensus 10 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l 70 (353)
.+++ +|..+.++++|++|++++|.+.+. +|..+. ++++|++|++++|.+.+.+|..+..+
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 4445 778899999999999999998864 788888 99999999999999988999999999
Q ss_pred CcccEeecCCCc-ccc-cChhhhhcc------ccccEEEeCCCcCCCCCch--hhcCCCCCCEEEcCCCCCCCCCCcccc
Q 047624 71 SSLERLSAAANQ-FVG-QIPETLGEL------KRMRFIGFGANKLSGEIPS--SIYNLSSLSNFDFPVNQLQGGLPTDLG 140 (353)
Q Consensus 71 ~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~ 140 (353)
++|++|++++|. +.+ .+|..+..+ ++|+.|++++|.+. .+|. .+..+++|++|++++|.+.+.+| .+.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999999999998 876 788888876 99999999999999 8888 89999999999999999876777 444
Q ss_pred CCCCCCCEEeccCccccccccccccCCCC-ccEEecCCCcceeeCCCcccc--cCccEEEEeeccCCCCCcchhH-HHhh
Q 047624 141 FTLPNLERLNVGDNQFTGPIPASISNASN-LMRLTIPQNGFSGKVPSLENL--HKLQWVVIAVNHLGNGEKDDLE-FVNS 216 (353)
Q Consensus 141 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~-~~~~ 216 (353)
.+++|+.|++++|.+. .+|..+..+++ |++|++++|.++.++..+... ++|+.++++.|.+.+.....+. ....
T Consensus 351 -~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 -SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp -EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred -CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 6889999999999888 77888888888 999999999988655555544 3788899888887653221111 0001
Q ss_pred hcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchh-hcCC-------CCCcEEecCCceeeeecCC
Q 047624 217 LVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSE-LRNL-------VNLELLELGDNQFTGRIPG 288 (353)
Q Consensus 217 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~-------~~L~~L~l~~n~~~~~~~~ 288 (353)
.-.+++|+.|++++|.+. .+|..+....++|++|++++|.++ .+|.. +... ++|++|++++|.+......
T Consensus 429 ~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 506 (636)
T 4eco_A 429 PFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506 (636)
T ss_dssp CCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred cccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence 114557777777777777 444444332247777777777766 44432 2222 2677777777776633222
Q ss_pred -C--CCCCCcEEEeecccccccCChhhhcCCCCcEEec------CCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 289 -R--NLTSLAILVFVENMLEGSIPSSLGKCQNLILLDL------SNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 289 -~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l------~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
. .+++|+.|++++|++.+ +|..+..+++|+.|++ ++|.+.+.+|..+..+++| ++|+|++|+|
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l 578 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL-TQLQIGSNDI 578 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC-CEEECCSSCC
T ss_pred hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC-CEEECCCCcC
Confidence 2 56777777777777765 6666777777777777 3456666677777777777 6777777764
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-38 Score=298.32 Aligned_cols=179 Identities=21% Similarity=0.217 Sum_probs=106.5
Q ss_pred CCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcc
Q 047624 167 ASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLST 246 (353)
Q Consensus 167 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 246 (353)
+++|++|++++|.+......+..+++|+.|+++.|.+.+... ...+..+++|+.|++++|.+.+..+..+..++
T Consensus 375 ~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 448 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE-----FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT- 448 (606)
T ss_dssp CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT-----TTTTTTCTTCCEEECTTSCCEECCTTTTTTCT-
T ss_pred CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC-----hhhhhccccCCEEECcCCCCCccchhhhcCCC-
Confidence 333333333333333333334444444444444444332110 12445566667777766666655555555553
Q ss_pred cCcEEEecCccccC-CCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhcCCCCcEEec
Q 047624 247 RIRILRVGNNQLFG-NIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDL 323 (353)
Q Consensus 247 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 323 (353)
+|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..+. ..+++|++|++++|++.+..|..+..+++|+.|++
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 67777777776664 2566666777777777777776655443 55677777777777777666677777777777777
Q ss_pred CCCcCCCCCCccccccc-ccceEEecCCCCC
Q 047624 324 SNNNLSGTIPTEVIGLS-SLSIYLDLSQNQL 353 (353)
Q Consensus 324 ~~n~~~~~~~~~~~~l~-~l~~~l~l~~~~~ 353 (353)
++|+++ .+|..+..++ ++ ++|++++|++
T Consensus 529 ~~N~l~-~~p~~~~~l~~~L-~~l~l~~N~~ 557 (606)
T 3vq2_A 529 SFNRIE-TSKGILQHFPKSL-AFFNLTNNSV 557 (606)
T ss_dssp TTSCCC-CEESCGGGSCTTC-CEEECCSCCC
T ss_pred CCCcCc-ccCHhHhhhcccC-cEEEccCCCc
Confidence 777777 5666666776 36 6777777664
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.6e-39 Score=302.82 Aligned_cols=334 Identities=21% Similarity=0.269 Sum_probs=289.4
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcc----------------------------------------------
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNEL---------------------------------------------- 35 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---------------------------------------------- 35 (353)
+.|+|+++.+.|.+|..+..+++|++|++++|.+
T Consensus 84 ~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~ 163 (636)
T 4eco_A 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163 (636)
T ss_dssp EEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred EEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHH
Confidence 5799999999999999999999999999998843
Q ss_pred --------------------------------cccCCcccCCCCCccEEEecCCccCCc-----------------cCcc
Q 047624 36 --------------------------------VGKVPGKLGSLSKLRTLAVHHNNLSGE-----------------IPSS 66 (353)
Q Consensus 36 --------------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~ 66 (353)
.+ +|..+.++++|++|++++|.+.+. +|..
T Consensus 164 ~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~ 242 (636)
T 4eco_A 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242 (636)
T ss_dssp HHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh
Confidence 23 577789999999999999999864 8999
Q ss_pred cc--CCCcccEeecCCCcccccChhhhhccccccEEEeCCCc-CCC-CCchhhcCC------CCCCEEEcCCCCCCCCCC
Q 047624 67 FG--NLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANK-LSG-EIPSSIYNL------SSLSNFDFPVNQLQGGLP 136 (353)
Q Consensus 67 ~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~ 136 (353)
+. .+++|++|++++|.+.+.+|..+.++++|+.|++++|. +++ .+|..+..+ ++|++|++++|.+. .+|
T Consensus 243 l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip 321 (636)
T 4eco_A 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP 321 (636)
T ss_dssp CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC
T ss_pred hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccC
Confidence 99 99999999999999998999999999999999999998 886 688877776 89999999999998 788
Q ss_pred c--cccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccC-ccEEEEeeccCCCCCcchhHH
Q 047624 137 T--DLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHK-LQWVVIAVNHLGNGEKDDLEF 213 (353)
Q Consensus 137 ~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~ 213 (353)
. .+. .+++|+.|++++|.+...+| .+..+++|++|++++|.+...+..+..+++ |+.|+++.|.+...+
T Consensus 322 ~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp------ 393 (636)
T 4eco_A 322 VETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP------ 393 (636)
T ss_dssp CHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCC------
T ss_pred chhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccc------
Confidence 7 565 79999999999999986777 888899999999999999977777999999 999999999887422
Q ss_pred Hhhhcc--cCCccEEEccCCcCCccCchhHh-------hhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeee
Q 047624 214 VNSLVN--AYGLELLEINTNNFGGMLPEAVG-------NLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTG 284 (353)
Q Consensus 214 ~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 284 (353)
..+.. +++|+.|++++|.+.+..|..+. .. ++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 394 -~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~- 470 (636)
T 4eco_A 394 -NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT- 470 (636)
T ss_dssp -SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-
T ss_pred -hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC-CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-
Confidence 22333 34899999999999987777666 44 38999999999998433345567999999999999998
Q ss_pred ecCCCCCC----------CCcEEEeecccccccCChhhh--cCCCCcEEecCCCcCCCCCCcccccccccceEEecCCC
Q 047624 285 RIPGRNLT----------SLAILVFVENMLEGSIPSSLG--KCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 351 (353)
Q Consensus 285 ~~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~ 351 (353)
..+...+. +|+.|++++|.+. .+|..+. .+++|+.|++++|++++ +|..+..+++| ++|+|++|
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L-~~L~Ls~N 546 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL-KGFGIRNQ 546 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC-CEEECCSC
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC-CEEECCCC
Confidence 44443322 9999999999999 7888887 99999999999999996 89999999999 89999654
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.7e-38 Score=294.08 Aligned_cols=346 Identities=20% Similarity=0.214 Sum_probs=230.0
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
|++|++++|.+.+..|..|..+++|++|++++|.+....|..|.++++|++|++++|.+....+..+..+++|++|++++
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~ 138 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138 (606)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS
T ss_pred ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCC
Confidence 56778888877776677777777888888877777766677777777777777777776644455566666666666666
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCC--EEEcCCCCCCC-------------------------
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLS--NFDFPVNQLQG------------------------- 133 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~------------------------- 133 (353)
|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+ .+++++|.+.+
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 218 (606)
T 3t6q_A 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218 (606)
T ss_dssp SCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHH
T ss_pred CcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHH
Confidence 665532222233355555555555544433233333333333 23332222210
Q ss_pred -------------------------------------------------CCCccccCCCCCCCEEeccCccccccccccc
Q 047624 134 -------------------------------------------------GLPTDLGFTLPNLERLNVGDNQFTGPIPASI 164 (353)
Q Consensus 134 -------------------------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 164 (353)
.++...+..+++|++|++++|.+. .+|..+
T Consensus 219 ~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l 297 (606)
T 3t6q_A 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297 (606)
T ss_dssp HHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC
T ss_pred hhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh
Confidence 111111223445555555555544 344444
Q ss_pred cCCCCccEEecCCCcceeeCC-C-------------------------cccccCccEEEEeeccCCCCCcchhHHHhhhc
Q 047624 165 SNASNLMRLTIPQNGFSGKVP-S-------------------------LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLV 218 (353)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~-~-------------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~ 218 (353)
..+++|++|++++|.+.+..+ . +..+++|+.++++.|.+.+.. .....+.
T Consensus 298 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~ 373 (606)
T 3t6q_A 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD----CCNLQLR 373 (606)
T ss_dssp CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE----ESTTTTT
T ss_pred cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc----Ccchhcc
Confidence 445555555555554443322 2 445555555555555543211 1134567
Q ss_pred ccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCc-hhhcCCCCCcEEecCCceeeeecCC--CCCCCCc
Q 047624 219 NAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIP-SELRNLVNLELLELGDNQFTGRIPG--RNLTSLA 295 (353)
Q Consensus 219 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~ 295 (353)
.+++|++|++++|.+.+..+..+...+ +|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+. ..+++|+
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECP-QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCT-TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCc-cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence 889999999999999877777887775 99999999999886554 4588999999999999999866553 6689999
Q ss_pred EEEeeccccccc---CChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 296 ILVFVENMLEGS---IPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 296 ~L~l~~~~~~~~---~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+|++++|++.+. .+..+..+++|+.|++++|++++..|..|..+++| ++|++++|+|
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l 512 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM-NHVDLSHNRL 512 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCC
T ss_pred EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC-CEEECCCCcc
Confidence 999999999762 33578999999999999999998889999999999 8999999986
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-37 Score=297.17 Aligned_cols=329 Identities=19% Similarity=0.264 Sum_probs=219.0
Q ss_pred cCcccccCCCCcEEEcccCcccc-----------------cCCcccC--CCCCccEEEecCCccCCccCccccCCCcccE
Q 047624 15 IPDNISHCVNLESLFLAHNELVG-----------------KVPGKLG--SLSKLRTLAVHHNNLSGEIPSSFGNLSSLER 75 (353)
Q Consensus 15 ~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 75 (353)
+|..+.++++|++|++++|.+.+ .+|..+. ++++|++|++++|.+.+.+|..+..+++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67788889999999999998876 2677776 8999999999999888888888999999999
Q ss_pred eecCCCc-ccc-cChhhhhccc-------cccEEEeCCCcCCCCCch--hhcCCCCCCEEEcCCCCCCCCCCccccCCCC
Q 047624 76 LSAAANQ-FVG-QIPETLGELK-------RMRFIGFGANKLSGEIPS--SIYNLSSLSNFDFPVNQLQGGLPTDLGFTLP 144 (353)
Q Consensus 76 L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 144 (353)
|++++|. +.+ .+|..+..++ +|+.|++++|.+. .+|. .+..+++|+.|++++|.+. .+| .+. .++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~-~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG-TNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC-TTS
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc-CCC
Confidence 9999997 776 6777777666 8999999999988 7777 8888999999999999887 777 443 688
Q ss_pred CCCEEeccCccccccccccccCCCC-ccEEecCCCcceeeCCCccccc--CccEEEEeeccCCCCCcchhHHHhhhcccC
Q 047624 145 NLERLNVGDNQFTGPIPASISNASN-LMRLTIPQNGFSGKVPSLENLH--KLQWVVIAVNHLGNGEKDDLEFVNSLVNAY 221 (353)
Q Consensus 145 ~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 221 (353)
+|+.|++++|.+. .+|..+..+++ |++|++++|.+...+..+...+ +|+.|+++.|.+.+..... .........+
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l-~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI-SCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC-SSCTTTCCCC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc-hhhhccccCC
Confidence 8999999988887 67777888888 9999999888886554454443 3888888887775422110 0000111223
Q ss_pred CccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcC--------CCCCcEEecCCceeeeecCC-C--C
Q 047624 222 GLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRN--------LVNLELLELGDNQFTGRIPG-R--N 290 (353)
Q Consensus 222 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~n~~~~~~~~-~--~ 290 (353)
+|+.|++++|.+. .+|..+....++|+.|++++|.+. .+|..+.. +++|++|++++|.+...... . .
T Consensus 674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence 5666666666555 344444322235566666555554 33332221 12555555555555422211 1 4
Q ss_pred CCCCcEEEeecccccccCChhhhcCCCCcEEecCC------CcCCCCCCcccccccccceEEecCCCCC
Q 047624 291 LTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSN------NNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~------n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+++|+.|++++|.+.+ +|..+..+++|+.|+|++ |.+.+.+|..|..+++| ++|+|++|+|
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L-~~L~Ls~N~L 818 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL-IQLQIGSNDI 818 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC-CEEECCSSCC
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC-CEEECCCCCC
Confidence 4555555555555553 455555555555555543 44555555555555555 5555555543
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.6e-38 Score=298.13 Aligned_cols=335 Identities=17% Similarity=0.288 Sum_probs=285.6
Q ss_pred CcEEEccCCCCcc-----------------ccCcccc--cCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCc-cC
Q 047624 1 LRILWLDNNTYGG-----------------QIPDNIS--HCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNN-LS 60 (353)
Q Consensus 1 L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~ 60 (353)
|++|+|++|.+++ .+|..+. .+++|++|++++|.+.+.+|..+.++++|++|++++|. +.
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 6899999999998 3888877 99999999999999888889999999999999999998 87
Q ss_pred C-ccCccccCCC-------cccEeecCCCcccccChh--hhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCC
Q 047624 61 G-EIPSSFGNLS-------SLERLSAAANQFVGQIPE--TLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQ 130 (353)
Q Consensus 61 ~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 130 (353)
+ .+|..+..++ +|++|++++|.+. .+|. .+.++++|+.|++++|.+. .+| .+..+++|+.|++++|.
T Consensus 530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSC
T ss_pred cccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCc
Confidence 6 6777666555 9999999999998 7888 8999999999999999998 777 88999999999999999
Q ss_pred CCCCCCccccCCCCC-CCEEeccCccccccccccccCCC--CccEEecCCCcceeeCCCcc------cccCccEEEEeec
Q 047624 131 LQGGLPTDLGFTLPN-LERLNVGDNQFTGPIPASISNAS--NLMRLTIPQNGFSGKVPSLE------NLHKLQWVVIAVN 201 (353)
Q Consensus 131 ~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~------~~~~L~~l~l~~~ 201 (353)
+. .+|..+. .+++ |+.|++++|.+. .+|..+...+ +|+.|++++|.+.+..+.+. ..++|+.|+++.|
T Consensus 607 l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 607 IE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred cc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 98 7887765 6788 999999999998 6787776654 49999999999877554322 4568999999999
Q ss_pred cCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhc-------ccCcEEEecCccccCCCchhhc--CCCCC
Q 047624 202 HLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLS-------TRIRILRVGNNQLFGNIPSELR--NLVNL 272 (353)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L 272 (353)
.+...+ ...+..+++|+.|++++|.+. .+|....... ++|++|++++|.++ .+|..+. .+++|
T Consensus 684 ~L~~lp------~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 684 EIQKFP------TELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755 (876)
T ss_dssp CCCSCC------HHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred cCCccC------HHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence 887432 123346789999999999988 6665544322 28999999999998 7888887 89999
Q ss_pred cEEecCCceeeeecC-CCCCCCCcEEEeec------ccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceE
Q 047624 273 ELLELGDNQFTGRIP-GRNLTSLAILVFVE------NMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIY 345 (353)
Q Consensus 273 ~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~ 345 (353)
+.|++++|.+.+... ...+++|+.|++++ |.+.+.+|..+..+++|+.|+|++|++ +.+|..+. ++| ++
T Consensus 756 ~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L-~~ 831 (876)
T 4ecn_A 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQL-YI 831 (876)
T ss_dssp CEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSS-CE
T ss_pred CEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCC-CE
Confidence 999999999987422 26789999999976 777888999999999999999999999 58898875 699 89
Q ss_pred EecCCCCC
Q 047624 346 LDLSQNQL 353 (353)
Q Consensus 346 l~l~~~~~ 353 (353)
|||++|+|
T Consensus 832 LdLs~N~l 839 (876)
T 4ecn_A 832 LDIADNPN 839 (876)
T ss_dssp EECCSCTT
T ss_pred EECCCCCC
Confidence 99999986
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=288.70 Aligned_cols=349 Identities=21% Similarity=0.228 Sum_probs=233.3
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
+++|++++|.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+.+|..+++|++|++++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence 46788888888877777788888888888888887777777788888888888888887755567788888888888888
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCC-CCchhhcCCCCCCEEEcCCCCCCCCCCccc--------------------
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSG-EIPSSIYNLSSLSNFDFPVNQLQGGLPTDL-------------------- 139 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-------------------- 139 (353)
|.+....+..++.+++|+.|++++|.+.. .+|..+..+++|++|++++|.+....+..+
T Consensus 110 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp SCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred cccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 87764333357777788888888777764 356777777777777777766542111100
Q ss_pred --------------------------------------------------------------------------------
Q 047624 140 -------------------------------------------------------------------------------- 139 (353)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (353)
T Consensus 190 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred eecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence
Q ss_pred --------cCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCC--------------------ccccc
Q 047624 140 --------GFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPS--------------------LENLH 191 (353)
Q Consensus 140 --------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~~ 191 (353)
...+++|+.++++++.+. .++..+..+ +|++|++++|.+...+.. ...++
T Consensus 270 ~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 270 YLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp EESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 001234555555554443 233333322 333333333332211110 03445
Q ss_pred CccEEEEeeccCCCCCcchh-------------------HHHhhhcccCCccEEEccCCcCCccCc-hhHhhhcccCcEE
Q 047624 192 KLQWVVIAVNHLGNGEKDDL-------------------EFVNSLVNAYGLELLEINTNNFGGMLP-EAVGNLSTRIRIL 251 (353)
Q Consensus 192 ~L~~l~l~~~~~~~~~~~~~-------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L 251 (353)
+|+.++++.|.+.+...... .....+..+++|+.|++++|.+.+..+ ..+..+ ++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC-TTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC-CCCCEE
Confidence 55555555554432110000 011124455667777777666654443 234445 488888
Q ss_pred EecCccccCCCchhhcCCCCCcEEecCCceee-eecC--CCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcC
Q 047624 252 RVGNNQLFGNIPSELRNLVNLELLELGDNQFT-GRIP--GRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNL 328 (353)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 328 (353)
++++|.+.+..+..+.++++|++|++++|.+. +..+ ...+++|++|++++|++.+..|..+..+++|+.|++++|++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 88888887777788888999999999999886 2333 26788999999999999887788899999999999999999
Q ss_pred CCCCCcccccccccceEEecCCCCC
Q 047624 329 SGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 329 ~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
++..|..|..+++| ++|++++|++
T Consensus 507 ~~~~~~~~~~l~~L-~~L~l~~N~~ 530 (570)
T 2z63_A 507 KSVPDGIFDRLTSL-QKIWLHTNPW 530 (570)
T ss_dssp SCCCTTTTTTCTTC-CEEECCSSCB
T ss_pred CCCCHHHhhcccCC-cEEEecCCcc
Confidence 98778888999999 8999999875
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=282.59 Aligned_cols=336 Identities=19% Similarity=0.232 Sum_probs=215.9
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|.+. .+|.. .+++|++|++++
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~ 99 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSF 99 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCS
T ss_pred ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccC
Confidence 466777777777655666777777777777777776666667777777777777777776 45554 677777777777
Q ss_pred Ccccc-cChhhhhccccccEEEeCCCcCCCCCchhhcCCCCC--CEEEcCCCCC--CCCCCccccC--------------
Q 047624 81 NQFVG-QIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSL--SNFDFPVNQL--QGGLPTDLGF-------------- 141 (353)
Q Consensus 81 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~~~~-------------- 141 (353)
|.+.+ ..|..++.+++|+.|++++|.+.+ ..+..+++| +.|++++|.+ ....+..+..
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred CccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 77764 355667777777777777777653 234445555 6777666655 2222222210
Q ss_pred -----------CCC---------------------------------------------------------CCCEEeccC
Q 047624 142 -----------TLP---------------------------------------------------------NLERLNVGD 153 (353)
Q Consensus 142 -----------~~~---------------------------------------------------------~L~~L~l~~ 153 (353)
.++ +|+.+++++
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 111 344444444
Q ss_pred ccccccccccc-----cCCCCccEEecCCCcc--------------------------eeeCCCcccccCccEEEEeecc
Q 047624 154 NQFTGPIPASI-----SNASNLMRLTIPQNGF--------------------------SGKVPSLENLHKLQWVVIAVNH 202 (353)
Q Consensus 154 ~~~~~~~~~~l-----~~~~~L~~L~l~~~~~--------------------------~~~~~~~~~~~~L~~l~l~~~~ 202 (353)
|.+.+.+|..+ ..+++|+.+++++|.+ .... ....+++|+.|++++|.
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNL 335 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSC
T ss_pred ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc-chhhCCcccEEEeECCc
Confidence 44443344443 3344443333333332 1100 01455666666666666
Q ss_pred CCCCCcchhHHHhhhcccCCccEEEccCCcCCc--cCchhHhhhcccCcEEEecCccccCCCch-hhcCCCCCcEEecCC
Q 047624 203 LGNGEKDDLEFVNSLVNAYGLELLEINTNNFGG--MLPEAVGNLSTRIRILRVGNNQLFGNIPS-ELRNLVNLELLELGD 279 (353)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~ 279 (353)
+.+ ..+..+..+++|++|++++|.+.+ .+|..+..++ +|++|++++|.+.+.+|. .+..+++|++|++++
T Consensus 336 l~~------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 336 LTD------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp CCT------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred cCh------hhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 544 123345666777777777777764 3445555563 777788877777753554 366677788888888
Q ss_pred ceeeeecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcc-cccccccceEEecCCCCC
Q 047624 280 NQFTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTE-VIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 280 n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~l~~l~~~l~l~~~~~ 353 (353)
|.+++..+....++|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|.. +..++++ ++|++++|++
T Consensus 409 N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L-~~L~l~~N~~ 480 (520)
T 2z7x_B 409 NILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL-QKIWLHTNPW 480 (520)
T ss_dssp SCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC-CEEECCSSCB
T ss_pred CCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc-cEEECcCCCC
Confidence 87766555444578999999999888 78887889999999999999999 56654 8889999 8999999875
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-36 Score=284.33 Aligned_cols=350 Identities=21% Similarity=0.200 Sum_probs=253.0
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
+++|++++|.+++..+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+.+..|..|..+++|++|++++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence 58899999999988888999999999999999999988888999999999999999999877789999999999999999
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCC-CCchhhcCCCCCCEEEcCCCCCCCCCCccccC------------------
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSG-EIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGF------------------ 141 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------------------ 141 (353)
|.+....+..+.++++|+.|++++|.+.+ .+|..+..+++|++|++++|.+.+..+..+..
T Consensus 114 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193 (606)
T ss_dssp SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC
T ss_pred CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc
Confidence 99986666779999999999999999985 56889999999999999998775322211100
Q ss_pred --------CCCCCCEEeccCcccc--------------------------------------------------------
Q 047624 142 --------TLPNLERLNVGDNQFT-------------------------------------------------------- 157 (353)
Q Consensus 142 --------~~~~L~~L~l~~~~~~-------------------------------------------------------- 157 (353)
...+|+.+++++|.+.
T Consensus 194 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 273 (606)
T 3vq2_A 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273 (606)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTT
T ss_pred ceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccc
Confidence 0012233333322211
Q ss_pred ------------------------ccccccccCCCCccEEecCCCcceeeC--------------------CCcccccCc
Q 047624 158 ------------------------GPIPASISNASNLMRLTIPQNGFSGKV--------------------PSLENLHKL 193 (353)
Q Consensus 158 ------------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~--------------------~~~~~~~~L 193 (353)
..++ .+..+++|++|++++|.+...+ ..+..+++|
T Consensus 274 ~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L 352 (606)
T 3vq2_A 274 FSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSL 352 (606)
T ss_dssp CCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTC
T ss_pred ccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCC
Confidence 0011 1222223333333333221111 012233444
Q ss_pred cEEEEeeccCCCCCcchh-------------------HHHhhhcccCCccEEEccCCcCCccCc-hhHhhhcccCcEEEe
Q 047624 194 QWVVIAVNHLGNGEKDDL-------------------EFVNSLVNAYGLELLEINTNNFGGMLP-EAVGNLSTRIRILRV 253 (353)
Q Consensus 194 ~~l~l~~~~~~~~~~~~~-------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l 253 (353)
+.++++.|.+.+...... .....+..+++|+.|++++|.+.+..+ ..+..+ ++|++|++
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l 431 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYLDI 431 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC-TTCCEEEC
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc-ccCCEEEC
Confidence 444444443322110000 111344556777777777777665555 455555 48889999
Q ss_pred cCccccCCCchhhcCCCCCcEEecCCceeeee-cCC--CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCC
Q 047624 254 GNNQLFGNIPSELRNLVNLELLELGDNQFTGR-IPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSG 330 (353)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 330 (353)
++|.+.+..|..+.++++|++|++++|.+.+. .+. ..+++|+.|++++|++.+..|..+..+++|+.|++++|++++
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 98888877788888899999999999988763 332 678999999999999988888889999999999999999998
Q ss_pred CCCcccccccccceEEecCCCCC
Q 047624 331 TIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 331 ~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
..|..+..+++| ++|+|++|+|
T Consensus 512 ~~~~~~~~l~~L-~~L~l~~N~l 533 (606)
T 3vq2_A 512 LDSSHYNQLYSL-STLDCSFNRI 533 (606)
T ss_dssp EEGGGTTTCTTC-CEEECTTSCC
T ss_pred cCHHHccCCCcC-CEEECCCCcC
Confidence 889999999999 8999999975
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.2e-36 Score=283.31 Aligned_cols=105 Identities=32% Similarity=0.433 Sum_probs=67.2
Q ss_pred CcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC---CCCCCCcEEEeeccccc-------------------
Q 047624 248 IRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG---RNLTSLAILVFVENMLE------------------- 305 (353)
Q Consensus 248 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~~~~~------------------- 305 (353)
|+.|++++|.+.+..|.++..+++|++|++++|.+.+..+. ..+++|++|++++|++.
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 44444444444444455666677777777777776654332 34455555555555443
Q ss_pred -------ccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 306 -------GSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 306 -------~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+.+|..+..+++|+.|++++|++++..|..|..+++| ++|++++|+|
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l 516 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNL 516 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCC
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCCCc
Confidence 3456667777888888888888886666777888888 7888888764
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-35 Score=280.68 Aligned_cols=344 Identities=22% Similarity=0.223 Sum_probs=195.1
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
|++|++++|.+.+..+..+..+++|++|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 51 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 130 (680)
T 1ziw_A 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130 (680)
T ss_dssp CSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS
T ss_pred CcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC
Confidence 45667777766666666666666666666666666654444566666666666666666544445566666666666666
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhc--CCCCCCEEEcCCCCCCCCCC----------------------
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIY--NLSSLSNFDFPVNQLQGGLP---------------------- 136 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~---------------------- 136 (353)
|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.+.+..+
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~ 210 (680)
T 1ziw_A 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210 (680)
T ss_dssp SCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHH
T ss_pred CcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChh
Confidence 666544444555555555555555555433332222 22344444444443321111
Q ss_pred -----------------------------ccccCCC--CCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCC
Q 047624 137 -----------------------------TDLGFTL--PNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVP 185 (353)
Q Consensus 137 -----------------------------~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 185 (353)
..+. .+ ++|+.|++++|.+....+..+..+++|++|++++|.+.+..+
T Consensus 211 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp HHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred hHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh
Confidence 1111 11 225555555555543334444555555555555554443322
Q ss_pred C----------------------------------cccccCccEEEEeeccCCCCCcchhHHHhhhcccC----------
Q 047624 186 S----------------------------------LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAY---------- 221 (353)
Q Consensus 186 ~----------------------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~---------- 221 (353)
. +..+++|+.++++.|.+.+.... .+..++
T Consensus 290 ~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN------MFTGLINLKYLSLSNS 363 (680)
T ss_dssp TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT------TTTTCTTCCEEECTTC
T ss_pred hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh------HhccccCCcEEECCCC
Confidence 1 22334444444444443332111 112222
Q ss_pred ------------------CccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCc-hhhcCCCCCcEEecCCcee
Q 047624 222 ------------------GLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIP-SELRNLVNLELLELGDNQF 282 (353)
Q Consensus 222 ------------------~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~ 282 (353)
.|+.+++++|.+.+..+.++..+ ++|++|++++|.+.+.++ ..+.++++|++|++++|.+
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC-CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc
Confidence 34444444444443344444444 366677776666654333 4555666666666666655
Q ss_pred eeec--------------------------C--CCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCC--
Q 047624 283 TGRI--------------------------P--GRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTI-- 332 (353)
Q Consensus 283 ~~~~--------------------------~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-- 332 (353)
.+.. + ...+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..
T Consensus 443 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 522 (680)
T 1ziw_A 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522 (680)
T ss_dssp EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGST
T ss_pred ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchh
Confidence 4321 1 256789999999999999777778999999999999999998532
Q ss_pred ------CcccccccccceEEecCCCCC
Q 047624 333 ------PTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 333 ------~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+..|..+++| ++|++++|+|
T Consensus 523 ~~~~~~~~~~~~l~~L-~~L~L~~N~l 548 (680)
T 1ziw_A 523 ANPGGPIYFLKGLSHL-HILNLESNGF 548 (680)
T ss_dssp TSTTSCCCTTTTCTTC-CEEECCSSCC
T ss_pred hccCCcchhhcCCCCC-CEEECCCCCC
Confidence 1347889999 8999999975
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.2e-36 Score=269.84 Aligned_cols=343 Identities=18% Similarity=0.192 Sum_probs=281.6
Q ss_pred EEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCcc-CccccCCCcccEeecCCC
Q 047624 3 ILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEI-PSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 3 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~ 81 (353)
.++.+++.++ .+|. + .++|++|++++|.+.+..+..|.++++|++|++++|.+.+.+ +..|..+++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4666777776 4554 2 378999999999999888899999999999999999886444 567999999999999999
Q ss_pred cccccChhhhhccccccEEEeCCCcCCCCCchh--hcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccc
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIPSS--IYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGP 159 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 159 (353)
.+....|..+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+....+..+...+++|++|++++|.+...
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 998878889999999999999999998644444 888999999999999998665666455799999999999999877
Q ss_pred ccccccCC--CCccEEecCCCcceeeCCC---------cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEc
Q 047624 160 IPASISNA--SNLMRLTIPQNGFSGKVPS---------LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEI 228 (353)
Q Consensus 160 ~~~~l~~~--~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 228 (353)
.+..+..+ ++++.|++++|.+.+.... +..+++|+.|+++.|.+.+... .........+.++.+++
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA---KRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH---HHHHHHTTTCCEEEEEC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch---hhhhccccccceeeEee
Confidence 77777655 7899999999988775533 2356789999999988764211 11122233488999999
Q ss_pred cCCcCCcc----------CchhHhhh-cccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCc
Q 047624 229 NTNNFGGM----------LPEAVGNL-STRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLA 295 (353)
Q Consensus 229 ~~~~~~~~----------~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~ 295 (353)
+++...+. ....+... .++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. ..+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 98854432 11112211 14899999999999988889999999999999999999877654 6789999
Q ss_pred EEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 296 ILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 296 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+|++++|.+.+..+..+..+++|+.|++++|++++..|..|..+++| ++|++++|+|
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l 383 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL-KELALDTNQL 383 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCC
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc-cEEECCCCcc
Confidence 99999999988778899999999999999999998889999999999 8999999986
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.3e-37 Score=282.39 Aligned_cols=345 Identities=20% Similarity=0.223 Sum_probs=227.8
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 57899999999887788899999999999999998877788889999999999999998866666688999999999999
Q ss_pred Ccccc-cChhhhhccccccEEEeCCCcCCCCCc-hhhcCCCCCCEEEcCCCCCCCCCCcccc------------------
Q 047624 81 NQFVG-QIPETLGELKRMRFIGFGANKLSGEIP-SSIYNLSSLSNFDFPVNQLQGGLPTDLG------------------ 140 (353)
Q Consensus 81 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~------------------ 140 (353)
|.+.. ..+..+..+++|+.|++++|...+.++ ..+..+++|++|++++|.+.+..+..+.
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 187 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc
Confidence 98874 345678888889999998887443444 5678888888888888877644444433
Q ss_pred -----CCCCCCCEEeccCccccccc--cccc-cCCCCccEEecC----------------------------C-------
Q 047624 141 -----FTLPNLERLNVGDNQFTGPI--PASI-SNASNLMRLTIP----------------------------Q------- 177 (353)
Q Consensus 141 -----~~~~~L~~L~l~~~~~~~~~--~~~l-~~~~~L~~L~l~----------------------------~------- 177 (353)
..+++|+.|++++|.+.... +..+ ..+++|++|+++ +
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 12455666666655544210 0000 011122222221 1
Q ss_pred ----------------------------------------------------CcceeeCCCc-ccccCccEEEEeeccCC
Q 047624 178 ----------------------------------------------------NGFSGKVPSL-ENLHKLQWVVIAVNHLG 204 (353)
Q Consensus 178 ----------------------------------------------------~~~~~~~~~~-~~~~~L~~l~l~~~~~~ 204 (353)
|.+...+..+ ..+++|+.|+++.|.+.
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccc
Confidence 1111111111 23444444444444433
Q ss_pred CCCcchhHHHhhhcccCCccEEEccCCcCCccCc--hhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCcee
Q 047624 205 NGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLP--EAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQF 282 (353)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 282 (353)
+.. ......+..+++|++|++++|.+.+..+ ..+..+ ++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 348 ~~~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 348 EEY---LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp HHH---HHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred ccc---ccchhhhhccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 200 0001124455666666666666653211 234444 37777777777776 5666666667777777777665
Q ss_pred eeecCC-------------------CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccc
Q 047624 283 TGRIPG-------------------RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLS 343 (353)
Q Consensus 283 ~~~~~~-------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~ 343 (353)
.+.... ..+++|++|++++|++. .+|. ...+++|+.|++++|++++..|..+..++++
T Consensus 423 ~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L- 499 (549)
T 2z81_A 423 RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSL- 499 (549)
T ss_dssp SCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTC-
T ss_pred ccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCccc-
Confidence 432111 25778888888888887 5665 4678899999999999998888889999999
Q ss_pred eEEecCCCCC
Q 047624 344 IYLDLSQNQL 353 (353)
Q Consensus 344 ~~l~l~~~~~ 353 (353)
++|++++|++
T Consensus 500 ~~L~l~~N~~ 509 (549)
T 2z81_A 500 QKIWLHTNPW 509 (549)
T ss_dssp CEEECCSSCB
T ss_pred CEEEecCCCc
Confidence 8999999874
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.8e-36 Score=273.35 Aligned_cols=336 Identities=20% Similarity=0.241 Sum_probs=261.8
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
+++++++|.++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 68999999999 5666555 89999999999998777788999999999999999998777889999999999999999
Q ss_pred cccccChhhhhccccccEEEeCCCcCCC-CCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCC--CEEeccCccc--
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSG-EIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNL--ERLNVGDNQF-- 156 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~-- 156 (353)
.+. .+|.. .+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.. ..+ ..+++| +.+++++|.+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~-~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSV-LPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGG-GGGTTSCEEEEEEEECTTTT
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhc-cccccceeeEEEeecccccc
Confidence 998 45655 89999999999999986 467899999999999999998863 222 256777 9999988877
Q ss_pred cccccccccC--------------------------CC------------------------------------------
Q 047624 157 TGPIPASISN--------------------------AS------------------------------------------ 168 (353)
Q Consensus 157 ~~~~~~~l~~--------------------------~~------------------------------------------ 168 (353)
....+..+.. ++
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc
Confidence 3333333322 22
Q ss_pred ---------------CccEEecCCCcceee-CCCc-----ccccCccEEEEeeccCCCCCcchhHHH-h-----------
Q 047624 169 ---------------NLMRLTIPQNGFSGK-VPSL-----ENLHKLQWVVIAVNHLGNGEKDDLEFV-N----------- 215 (353)
Q Consensus 169 ---------------~L~~L~l~~~~~~~~-~~~~-----~~~~~L~~l~l~~~~~~~~~~~~~~~~-~----------- 215 (353)
+|++|++++|.+.+. +..+ ..++.|+.++++.+.+ ..+....... .
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEES
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCC
Confidence 455555555555432 2223 5556666666665554 2111100000 0
Q ss_pred -------hhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccC--CCchhhcCCCCCcEEecCCceeeeec
Q 047624 216 -------SLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFG--NIPSELRNLVNLELLELGDNQFTGRI 286 (353)
Q Consensus 216 -------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~ 286 (353)
....+++|++|++++|.+.+..|.++..++ +|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..
T Consensus 312 n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred CccccccchhhCCcccEEEeECCccChhhhhhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 015778999999999999887888887775 99999999999875 45677889999999999999998734
Q ss_pred C---CCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 287 P---GRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 287 ~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+ ...+++|+.|++++|.+++..+..+. ++|+.|++++|+++ .+|..+..+++| ++|++++|+|
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L-~~L~L~~N~l 456 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL-QELNVASNQL 456 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTC-CEEECCSSCC
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCC-CEEECCCCcC
Confidence 4 25678999999999999877766554 79999999999999 889888899999 8999999986
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-36 Score=289.01 Aligned_cols=132 Identities=20% Similarity=0.171 Sum_probs=91.5
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCccc-ccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELV-GKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAA 79 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (353)
+++|+|++|.+++..+..|..+++|++|++++|... .+.+..|.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 467888888887777777777777888877777433 3336667777777777777777775667777777777777777
Q ss_pred CCcccccChhh--hhccccccEEEeCCCcCCCCCc-hhhcCCCCCCEEEcCCCCCC
Q 047624 80 ANQFVGQIPET--LGELKRMRFIGFGANKLSGEIP-SSIYNLSSLSNFDFPVNQLQ 132 (353)
Q Consensus 80 ~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 132 (353)
+|.+.+..+.. +.++++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 77776544443 6677777777777777664433 45666677777776666554
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-35 Score=273.79 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=123.7
Q ss_pred ccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCcc--CchhHhhhcccCcEEEecCccccCCCch-
Q 047624 188 ENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGM--LPEAVGNLSTRIRILRVGNNQLFGNIPS- 264 (353)
Q Consensus 188 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~- 264 (353)
..+++|+.+++++|.+.+ ..+..+..+++|+.|++++|.+.+. .+..+..++ +|++|++++|.+.+.+|.
T Consensus 350 ~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp SSCCCCCEEECCSSCCCT------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSC
T ss_pred cCCCCceEEECCCCcccc------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChh
Confidence 566778888888877765 2334567788899999999888752 234456664 899999999988864554
Q ss_pred hhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcc-cccccccc
Q 047624 265 ELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTE-VIGLSSLS 343 (353)
Q Consensus 265 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~l~~l~ 343 (353)
.+..+++|++|++++|.+++..+....++|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|.. +..++++
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L- 499 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL- 499 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC-
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC-
Confidence 57788999999999999887666544479999999999998 68877779999999999999999 56655 8899999
Q ss_pred eEEecCCCCC
Q 047624 344 IYLDLSQNQL 353 (353)
Q Consensus 344 ~~l~l~~~~~ 353 (353)
++|++++|++
T Consensus 500 ~~L~l~~N~~ 509 (562)
T 3a79_B 500 QYIWLHDNPW 509 (562)
T ss_dssp CCEECCSCCB
T ss_pred CEEEecCCCc
Confidence 8999999975
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-35 Score=264.90 Aligned_cols=315 Identities=19% Similarity=0.200 Sum_probs=184.8
Q ss_pred EEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCc
Q 047624 3 ILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ 82 (353)
Q Consensus 3 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 82 (353)
.++.+++.++ .+|..+ .++++.|++++|.+....+..|.++++|++|++++|.+.+..|.+|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3444555554 333332 2456666666666665555566666666666666666654455566666666666666666
Q ss_pred ccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccc
Q 047624 83 FVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPA 162 (353)
Q Consensus 83 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 162 (353)
+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+. .+++|++|++++|.+....+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSCCHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCcccChh
Confidence 6543334455666666666666666544455556666666666666655422222222 455666666666655533333
Q ss_pred cccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhH
Q 047624 163 SISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAV 241 (353)
Q Consensus 163 ~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 241 (353)
.+..+++|+.|++++|.+....+. +..+++ |+.|++++|...+.++...
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~------------------------------L~~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYR------------------------------LKVLEISHWPYLDTMTPNC 220 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTT------------------------------CCEEEEECCTTCCEECTTT
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcc------------------------------cceeeCCCCccccccCccc
Confidence 455555666666666555544332 444444 4445554444443444333
Q ss_pred hhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhcCCCCc
Q 047624 242 GNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLI 319 (353)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 319 (353)
.... +|++|++++|.+++..+..+..+++|++|++++|.+.+..+. ..+++|+.|++++|.+.+..+..|..+++|+
T Consensus 221 ~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 221 LYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp TTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred ccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 3332 677777777776633334566777777777777776655442 5566777777777777766667777777777
Q ss_pred EEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 320 LLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 320 ~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
.|++++|.+++..+..|..+++| ++|++++|++
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~l 332 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSVGNL-ETLILDSNPL 332 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCGGGC-CEEECCSSCE
T ss_pred EEECCCCcCceeCHhHcCCCccc-CEEEccCCCc
Confidence 77777777775555566777777 6777777753
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.5e-34 Score=249.62 Aligned_cols=307 Identities=24% Similarity=0.384 Sum_probs=257.1
Q ss_pred ccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccc
Q 047624 18 NISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRM 97 (353)
Q Consensus 18 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 97 (353)
.+..+++|++|+++++.+... + .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.. + ..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 345789999999999988744 3 4788999999999999987 4444 8999999999999998874 3 468899999
Q ss_pred cEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCC
Q 047624 98 RFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQ 177 (353)
Q Consensus 98 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 177 (353)
+.|++++|.+. ..+. +..+++|+.|++++|......+. +. .+++|+.+++++|.+.... . +..+++|++|++++
T Consensus 113 ~~L~l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~-~-~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 113 RELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLSDLSP-LS-NMTGLNYLTVTESKVKDVT-P-IANLTDLYSLSLNY 186 (347)
T ss_dssp SEEECTTSCCC-CCGG-GTTCTTCCEEECTTCTTCCCCGG-GT-TCTTCCEEECCSSCCCCCG-G-GGGCTTCSEEECTT
T ss_pred CEEECcCCccc-Cchh-hccCCceeEEECCCCCCcccccc-hh-hCCCCcEEEecCCCcCCch-h-hccCCCCCEEEccC
Confidence 99999999988 4444 88899999999999976534433 33 7899999999999887432 2 78899999999999
Q ss_pred CcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCcc
Q 047624 178 NGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQ 257 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 257 (353)
|.+.+... +..+++|+.+.++.|.+.+.. .+..+++|++|++++|.+.+..+ +..+ ++|++|++++|.
T Consensus 187 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--------~~~~~~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~ 254 (347)
T 4fmz_A 187 NQIEDISP-LASLTSLHYFTAYVNQITDIT--------PVANMTRLNSLKIGNNKITDLSP--LANL-SQLTWLEIGTNQ 254 (347)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSC
T ss_pred Cccccccc-ccCCCccceeecccCCCCCCc--------hhhcCCcCCEEEccCCccCCCcc--hhcC-CCCCEEECCCCc
Confidence 99887554 888999999999998876532 26788999999999999885433 5556 499999999999
Q ss_pred ccCCCchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccc
Q 047624 258 LFGNIPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVI 337 (353)
Q Consensus 258 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 337 (353)
+++ . ..+..+++|++|++++|.+.+......+++|+.|++++|++.+..+..+..+++|+.|++++|++++..| +.
T Consensus 255 l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 255 ISD-I-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp CCC-C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred cCC-C-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 874 3 5688999999999999999877556788999999999999998888899999999999999999997666 88
Q ss_pred cccccceEEecCCCCC
Q 047624 338 GLSSLSIYLDLSQNQL 353 (353)
Q Consensus 338 ~l~~l~~~l~l~~~~~ 353 (353)
.+++| ++|++++|+|
T Consensus 331 ~l~~L-~~L~l~~N~i 345 (347)
T 4fmz_A 331 SLSKM-DSADFANQVI 345 (347)
T ss_dssp GCTTC-SEESSSCC--
T ss_pred hhhcc-ceeehhhhcc
Confidence 99999 8999999986
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-35 Score=282.30 Aligned_cols=345 Identities=21% Similarity=0.239 Sum_probs=206.6
Q ss_pred CcEEEccCCCCcccc-CcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCcc--ccCCCcccEee
Q 047624 1 LRILWLDNNTYGGQI-PDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSS--FGNLSSLERLS 77 (353)
Q Consensus 1 L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~ 77 (353)
|++|++++|...+.+ +..|.++++|++|++++|.+....|..|.++++|++|++++|.+.+..+.. +..+++|++|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 577888888655454 667888888888888888887777788888888888888888877555544 77888888888
Q ss_pred cCCCcccccCh-hhhhccccccEEEeCCCcCCCCCchhhcCC--CC------------------------------CCEE
Q 047624 78 AAANQFVGQIP-ETLGELKRMRFIGFGANKLSGEIPSSIYNL--SS------------------------------LSNF 124 (353)
Q Consensus 78 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~------------------------------L~~L 124 (353)
+++|.+.+..+ ..+.++++|+.|++++|.+.+..+..+..+ ++ |+.|
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 209 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence 88887765433 467788888888888877765444443332 23 5555
Q ss_pred EcCCCCCCCCCCccccC-------------------------------------CCCCCCEEeccCccccccccccccCC
Q 047624 125 DFPVNQLQGGLPTDLGF-------------------------------------TLPNLERLNVGDNQFTGPIPASISNA 167 (353)
Q Consensus 125 ~l~~~~~~~~~~~~~~~-------------------------------------~~~~L~~L~l~~~~~~~~~~~~l~~~ 167 (353)
++++|.+....+..+.. ..++++.|++++|.+....+..+..+
T Consensus 210 ~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp BCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred ecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 55555433222211110 02456666666666655555556666
Q ss_pred CCccEEecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcc
Q 047624 168 SNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLST 246 (353)
Q Consensus 168 ~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 246 (353)
++|++|++++|.+....+. +..+++|+.|+++.|.+.+.. ...+..+++|+.|++++|.+....+..+..++
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~- 362 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY------SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE- 362 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC------SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC-
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC------HHHhcCCCCCCEEECCCCCCCccChhhhcCCC-
Confidence 7777777777776665443 666677777777766654422 12344455556666655555433333333332
Q ss_pred cCcEEEecCccccC------------------CCc----------------------hhhcCCCCCcEEecCCceeeeec
Q 047624 247 RIRILRVGNNQLFG------------------NIP----------------------SELRNLVNLELLELGDNQFTGRI 286 (353)
Q Consensus 247 ~L~~L~l~~~~~~~------------------~~~----------------------~~~~~~~~L~~L~l~~n~~~~~~ 286 (353)
+|++|++++|.+++ .+| ..+..+++|++|++++|.+.+..
T Consensus 363 ~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 442 (844)
T 3j0a_A 363 KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442 (844)
T ss_dssp CCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCC
T ss_pred CCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccc
Confidence 55555555544331 000 11235566666666666665332
Q ss_pred CC---CCCCCCcEEEeeccccc-----ccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 287 PG---RNLTSLAILVFVENMLE-----GSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 287 ~~---~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+. ..+++|+.|++++|.+. +..+..|..+++|+.|++++|++++..|..|..+++| ++|+|++|+|
T Consensus 443 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l 516 (844)
T 3j0a_A 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL-RGLSLNSNRL 516 (844)
T ss_dssp SSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC-SEEEEESCCC
T ss_pred cccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh-heeECCCCCC
Confidence 21 23455555555555554 2223345566666666666666666666666666666 6666666654
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.8e-34 Score=259.78 Aligned_cols=320 Identities=27% Similarity=0.365 Sum_probs=206.0
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
++.|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+. +. +..+++|++|++++
T Consensus 48 l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 48 VTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFN 121 (466)
T ss_dssp CCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCS
T ss_pred ccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCC
Confidence 4566777776663 33 25666777777777776654433 66677777777777766533 33 66667777777777
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCch--------------------hhcCCCCCCEEEcCCCCCCCCCCcccc
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPS--------------------SIYNLSSLSNFDFPVNQLQGGLPTDLG 140 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~ 140 (353)
|.+... +. +..+++|+.|++++|.+.. ++. .+..+++|+.|++++|.+. .++. +
T Consensus 122 n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-l- 195 (466)
T 1o6v_A 122 NQITDI-DP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DISV-L- 195 (466)
T ss_dssp SCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGG-G-
T ss_pred CCCCCC-hH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CChh-h-
Confidence 666532 22 6666666666666666552 221 2445566666666666654 2221 2
Q ss_pred CCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhccc
Q 047624 141 FTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNA 220 (353)
Q Consensus 141 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~ 220 (353)
..+++|+.|++++|.+....+ +..+++|++|++++|.+.+. +.+..+++|+.|+++.|.+.+.. .+..+
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~--------~~~~l 264 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLA--------PLSGL 264 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG--------GGTTC
T ss_pred ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccch--------hhhcC
Confidence 246667777776666653322 55566777777777766543 34566677777777776665421 15566
Q ss_pred CCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEee
Q 047624 221 YGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFV 300 (353)
Q Consensus 221 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~ 300 (353)
++|+.|++++|.+.+..+ +..+ ++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+...+++|+.|+++
T Consensus 265 ~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--LAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECC
T ss_pred CCCCEEECCCCccCcccc--ccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECC
Confidence 777777777777664332 4444 477888888777764322 66778888888888877776666777888888888
Q ss_pred cccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 301 ENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 301 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+|++.+. ..+..+++|+.|++++|++++..| +..++++ ++|++++|++
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~l~~n~~ 387 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI-TQLGLNDQAW 387 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC-CEEECCCEEE
T ss_pred CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC-CEEeccCCcc
Confidence 8877643 467778888888888888886666 6778888 7888887753
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.6e-34 Score=252.17 Aligned_cols=308 Identities=16% Similarity=0.144 Sum_probs=251.4
Q ss_pred cCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEE
Q 047624 21 HCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFI 100 (353)
Q Consensus 21 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 100 (353)
.+++++.++++++.+....+..+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46889999999998886666667889999999999998886666688999999999999999887777778899999999
Q ss_pred EeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcc
Q 047624 101 GFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGF 180 (353)
Q Consensus 101 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 180 (353)
++++|.+....+..+..+++|++|++++|.+....+..+ ..+++|++|++++|.+... .+..+++|++|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT-SSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhc-cCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 999999884444446888999999999998874333334 3788999999999988743 356688999999999877
Q ss_pred eeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccC
Q 047624 181 SGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFG 260 (353)
Q Consensus 181 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 260 (353)
... ...++++.++++.|.+...+. ...++|+.|++++|.+.+. .++..++ +|++|++++|.+.+
T Consensus 199 ~~~----~~~~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 199 STL----AIPIAVEELDASHNSINVVRG---------PVNVELTILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELEK 262 (390)
T ss_dssp SEE----ECCSSCSEEECCSSCCCEEEC---------CCCSSCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCE
T ss_pred ccc----CCCCcceEEECCCCeeeeccc---------cccccccEEECCCCCCccc--HHHcCCC-CccEEECCCCcCCC
Confidence 653 344688999998887754321 2347899999999998754 4666664 99999999999987
Q ss_pred CCchhhcCCCCCcEEecCCceeeeecCC-CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccc
Q 047624 261 NIPSELRNLVNLELLELGDNQFTGRIPG-RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGL 339 (353)
Q Consensus 261 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l 339 (353)
..|..+..+++|++|++++|.+.+.... ..+++|++|++++|++. .+|..+..+++|+.|++++|++++ +| +..+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~ 338 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTH 338 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTT
T ss_pred cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhh
Confidence 7788999999999999999999876543 56899999999999998 677788899999999999999985 44 6778
Q ss_pred cccceEEecCCCCC
Q 047624 340 SSLSIYLDLSQNQL 353 (353)
Q Consensus 340 ~~l~~~l~l~~~~~ 353 (353)
++| ++|++++|++
T Consensus 339 ~~L-~~L~l~~N~~ 351 (390)
T 3o6n_A 339 HTL-KNLTLSHNDW 351 (390)
T ss_dssp CCC-SEEECCSSCE
T ss_pred ccC-CEEEcCCCCc
Confidence 999 8999999975
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-33 Score=254.70 Aligned_cols=303 Identities=24% Similarity=0.353 Sum_probs=223.6
Q ss_pred ccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccE
Q 047624 20 SHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRF 99 (353)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 99 (353)
..+++++.|++.++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+... +. +.++++|+.
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh-hhccccCCEEECCCCccccC-hh-hcCCCCCCE
Confidence 357899999999998874 34 3788999999999999988 4444 89999999999999999854 33 899999999
Q ss_pred EEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccc--------------------cCCCCCCCEEeccCcccccc
Q 047624 100 IGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDL--------------------GFTLPNLERLNVGDNQFTGP 159 (353)
Q Consensus 100 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--------------------~~~~~~L~~L~l~~~~~~~~ 159 (353)
|++++|.+.+ .+. +..+++|++|++++|.+.. ++. + ...+++|+.|++++|.+...
T Consensus 117 L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 117 LTLFNNQITD-IDP-LKNLTNLNRLELSSNTISD-ISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp EECCSSCCCC-CGG-GTTCTTCSEEEEEEEEECC-CGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCCCCC-ChH-HcCCCCCCEEECCCCccCC-Chh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC
Confidence 9999999984 443 8889999999999988762 322 1 12445566666666665422
Q ss_pred ccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCch
Q 047624 160 IPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPE 239 (353)
Q Consensus 160 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 239 (353)
..+..+++|++|++++|.+.+..+ +..+++|+.|+++.|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--------GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred --hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--------hhhhcCCCCCEEECCCCccccchh-
Confidence 235556666666666666655433 55566677777766665432 245667778888888877764433
Q ss_pred hHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCChhhhcCCCCc
Q 047624 240 AVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLI 319 (353)
Q Consensus 240 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 319 (353)
+..+ ++|++|++++|.+.+. +. +..+++|++|++++|.+.+..+...+++|+.|++++|++.+..+ +..+++|+
T Consensus 261 -~~~l-~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 -LSGL-TKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp -GTTC-TTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred -hhcC-CCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 4444 4788888888887643 32 67788888888888888776666778888888888888876544 67888888
Q ss_pred EEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 320 LLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 320 ~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
.|++++|++++. ..+..+++| ++|++++|+|
T Consensus 335 ~L~l~~n~l~~~--~~l~~l~~L-~~L~l~~n~l 365 (466)
T 1o6v_A 335 RLFFYNNKVSDV--SSLANLTNI-NWLSAGHNQI 365 (466)
T ss_dssp EEECCSSCCCCC--GGGTTCTTC-CEEECCSSCC
T ss_pred EeECCCCccCCc--hhhccCCCC-CEEeCCCCcc
Confidence 888888888854 467788888 8899888875
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.8e-34 Score=264.30 Aligned_cols=337 Identities=20% Similarity=0.247 Sum_probs=217.1
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
++++++++.+++ +|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|.+|..+++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 456777777764 444332 67777777777776666666777777777777777776555666777777777777777
Q ss_pred cccccChhhhhccccccEEEeCCCcCCC-CCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCC--CEEeccCccc--
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSG-EIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNL--ERLNVGDNQF-- 156 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~-- 156 (353)
.+. .+|.. .+++|+.|++++|.+.. ..|..+..+++|++|++++|.+.... +. .++.+ +++++++|.+
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~-~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LL-PVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TG-GGTTSCEEEEEEEESSCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hh-hhhhceeeEEEeecccccc
Confidence 766 34443 56777777777777664 23456677777777777777665311 11 23344 6666666655
Q ss_pred cccccccccC--------------------------CCCccEEecCCCc----------------------------cee
Q 047624 157 TGPIPASISN--------------------------ASNLMRLTIPQNG----------------------------FSG 182 (353)
Q Consensus 157 ~~~~~~~l~~--------------------------~~~L~~L~l~~~~----------------------------~~~ 182 (353)
....+..+.. +++|+.+++++|. +.+
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 3222222222 2233333333331 000
Q ss_pred e----CCCcccccCccEEEEeeccCCCCCcchh-------------------------HHHhhh----------------
Q 047624 183 K----VPSLENLHKLQWVVIAVNHLGNGEKDDL-------------------------EFVNSL---------------- 217 (353)
Q Consensus 183 ~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~-------------------------~~~~~l---------------- 217 (353)
. .......+++++|++++|.+.+...... .....+
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 0 0000001134444444433321110000 111111
Q ss_pred ------cccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccC--CCchhhcCCCCCcEEecCCceeeeecCC-
Q 047624 218 ------VNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFG--NIPSELRNLVNLELLELGDNQFTGRIPG- 288 (353)
Q Consensus 218 ------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~- 288 (353)
..+++|++|++++|.+.+..+.++..++ +|++|++++|.+.+ ..|..+.++++|++|++++|.+.+..+.
T Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCS-SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred ccccCccCCCCceEEECCCCccccchhhhhcccC-CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 5678999999999999887788887775 99999999999874 2346688999999999999999874443
Q ss_pred --CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 289 --RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 289 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
..+++|+.|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++| ++|++++|+|
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L-~~L~L~~N~l 485 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL-QELNVASNQL 485 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC-SEEECCSSCC
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC-CEEECCCCCC
Confidence 5678999999999999876665443 69999999999999 788877899999 8999999986
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=267.52 Aligned_cols=327 Identities=20% Similarity=0.268 Sum_probs=236.4
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
|++|++++|.+.+..+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|++++
T Consensus 54 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 133 (570)
T 2z63_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS
T ss_pred ceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC
Confidence 57788888888876677788888888888888887766667777788888888887777643333577777777777777
Q ss_pred Ccccc-cChhhhhccccccEEEeCCCcCCCCCch----------------------------------------------
Q 047624 81 NQFVG-QIPETLGELKRMRFIGFGANKLSGEIPS---------------------------------------------- 113 (353)
Q Consensus 81 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~---------------------------------------------- 113 (353)
|.+.. ..|..+.++++|+.|++++|.+....+.
T Consensus 134 n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~ 213 (570)
T 2z63_A 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213 (570)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred CccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccccc
Confidence 77654 3466677777777777766654422111
Q ss_pred ---------------------------------------------------------------hhcCCCCCCEEEcCCCC
Q 047624 114 ---------------------------------------------------------------SIYNLSSLSNFDFPVNQ 130 (353)
Q Consensus 114 ---------------------------------------------------------------~l~~l~~L~~L~l~~~~ 130 (353)
.+..+++|+.|+++++.
T Consensus 214 ~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 293 (570)
T 2z63_A 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293 (570)
T ss_dssp TTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE
T ss_pred ccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc
Confidence 12223455666665555
Q ss_pred CCCCCCcccc-----------------------------------------CCCCCCCEEeccCccccccc--cccccCC
Q 047624 131 LQGGLPTDLG-----------------------------------------FTLPNLERLNVGDNQFTGPI--PASISNA 167 (353)
Q Consensus 131 ~~~~~~~~~~-----------------------------------------~~~~~L~~L~l~~~~~~~~~--~~~l~~~ 167 (353)
+. .++..+. ..+++|+.|++++|.+.... +..+..+
T Consensus 294 l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 294 IE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372 (570)
T ss_dssp EC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred ch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccccc
Confidence 44 3333222 13445555555555554221 3445566
Q ss_pred CCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhccc
Q 047624 168 SNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTR 247 (353)
Q Consensus 168 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 247 (353)
++|++|++++|.+.+..+.+..+++|+.|+++.|.+.+... ...+..+++|++|++++|.+.+..+..+..++ +
T Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~ 446 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-S 446 (570)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT-----SCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-T
T ss_pred CccCEEECCCCccccccccccccCCCCEEEccCCccccccc-----hhhhhcCCCCCEEeCcCCcccccchhhhhcCC-c
Confidence 67777777777666655556677778888887776644221 13467889999999999999887887887775 9
Q ss_pred CcEEEecCcccc-CCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhcCCCCcEEecC
Q 047624 248 IRILRVGNNQLF-GNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLS 324 (353)
Q Consensus 248 L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 324 (353)
|++|++++|.+. +.+|..+..+++|++|++++|.+.+..+. ..+++|++|++++|++.+..+..+..+++|+.++++
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 999999999987 46888999999999999999999987554 678999999999999998777889999999999999
Q ss_pred CCcCCCCCCc
Q 047624 325 NNNLSGTIPT 334 (353)
Q Consensus 325 ~n~~~~~~~~ 334 (353)
+|++++..|.
T Consensus 527 ~N~~~~~~~~ 536 (570)
T 2z63_A 527 TNPWDCSCPR 536 (570)
T ss_dssp SSCBCCCTTT
T ss_pred CCcccCCCcc
Confidence 9999987764
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.6e-34 Score=267.98 Aligned_cols=351 Identities=23% Similarity=0.245 Sum_probs=257.5
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
+++|||++|.+++..+..|.++++|++|++++|.+..+.+.+|.++++|++|++++|++....+..|..+++|++|++++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 57899999999987778999999999999999999888888899999999999999999855556789999999999999
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCC-CCchhhcCCCCCCEEEcCCCCCCCCCCcccc-------------------
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSG-EIPSSIYNLSSLSNFDFPVNQLQGGLPTDLG------------------- 140 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------------------- 140 (353)
|.+.+..+..++++++|+.|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+.
T Consensus 134 N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 134 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc
Confidence 99986555668999999999999999874 3567788889999999888766421110000
Q ss_pred --------------------------------------------------------------------------------
Q 047624 141 -------------------------------------------------------------------------------- 140 (353)
Q Consensus 141 -------------------------------------------------------------------------------- 140 (353)
T Consensus 214 ~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 214 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence
Q ss_pred -------------------------------CCCCCCCEEeccCccccccc-------------------cccccCCCCc
Q 047624 141 -------------------------------FTLPNLERLNVGDNQFTGPI-------------------PASISNASNL 170 (353)
Q Consensus 141 -------------------------------~~~~~L~~L~l~~~~~~~~~-------------------~~~l~~~~~L 170 (353)
.....++.+++.++.+.... ......+++|
T Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L 373 (635)
T 4g8a_A 294 YLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 373 (635)
T ss_dssp CEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTC
T ss_pred cccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccccc
Confidence 00112223333332221100 0011235677
Q ss_pred cEEecCCCcceeeCCC---cccccCccEEEEeeccCCCCCc------------------chhHHHhhhcccCCccEEEcc
Q 047624 171 MRLTIPQNGFSGKVPS---LENLHKLQWVVIAVNHLGNGEK------------------DDLEFVNSLVNAYGLELLEIN 229 (353)
Q Consensus 171 ~~L~l~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~------------------~~~~~~~~l~~~~~L~~L~l~ 229 (353)
+.+++++|.+...... .....+++.+++..+....... ........+..+++++.++++
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls 453 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECT
T ss_pred ccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence 7777777766432111 2333444444443332111000 000112245567788888998
Q ss_pred CCcCCccCchhHhhhcccCcEEEecCcccc-CCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccc
Q 047624 230 TNNFGGMLPEAVGNLSTRIRILRVGNNQLF-GNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEG 306 (353)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~ 306 (353)
.|.+....+..+... +.+++|++++|... ...|..+..+++|++|++++|.+.+..+. ..+++|++|++++|++.+
T Consensus 454 ~n~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~ 532 (635)
T 4g8a_A 454 HTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532 (635)
T ss_dssp TSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred ccccccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence 888876666666666 49999999999754 34678889999999999999999987664 678999999999999998
Q ss_pred cCChhhhcCCCCcEEecCCCcCCCCCCcccccc-cccceEEecCCCCC
Q 047624 307 SIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGL-SSLSIYLDLSQNQL 353 (353)
Q Consensus 307 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l-~~l~~~l~l~~~~~ 353 (353)
..+..|..+++|+.|++++|++++..|+.+..+ ++| ++|+|++|++
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L-~~L~L~~Np~ 579 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL-AFLNLTQNDF 579 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTC-CEEECTTCCB
T ss_pred CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcC-CEEEeeCCCC
Confidence 888889999999999999999999999999988 578 8999999974
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-34 Score=265.59 Aligned_cols=343 Identities=20% Similarity=0.264 Sum_probs=239.5
Q ss_pred EEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcc
Q 047624 4 LWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83 (353)
Q Consensus 4 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 83 (353)
.+.+++.++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+.+..|.+|..+++|++|++++|.+
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 466777877 4565443 7999999999999888888999999999999999999877778999999999999999999
Q ss_pred cccChhhhhccccccEEEeCCCcCCC-CCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccc
Q 047624 84 VGQIPETLGELKRMRFIGFGANKLSG-EIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPA 162 (353)
Q Consensus 84 ~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 162 (353)
.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|...+.++......+++|++|++++|.+....+.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 97777779999999999999999985 35667899999999999999854466644444799999999999999877788
Q ss_pred cccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcch-------------------------hHHHhh
Q 047624 163 SISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDD-------------------------LEFVNS 216 (353)
Q Consensus 163 ~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~-------------------------~~~~~~ 216 (353)
.+..+++|++|++++|........ +..+++|+.++++.|.+.+..... ..+...
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 888888888888877765433322 244667777777777665432100 011122
Q ss_pred hcccCCccEEEccCCcCCcc-----------------------------------CchhHhhhcccCcEEEecCccccCC
Q 047624 217 LVNAYGLELLEINTNNFGGM-----------------------------------LPEAVGNLSTRIRILRVGNNQLFGN 261 (353)
Q Consensus 217 l~~~~~L~~L~l~~~~~~~~-----------------------------------~~~~~~~~~~~L~~L~l~~~~~~~~ 261 (353)
+..++.++.+++++|.+.+. ++. +....++|++|++++|.+. .
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~-~~~~~~~L~~L~l~~n~l~-~ 324 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST-VYSLLEKVKRITVENSKVF-L 324 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH-HHHHSTTCCEEEEESSCCC-C
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh-hhhhcccceEEEeccCccc-c
Confidence 23334444444444433210 000 1112236666677666665 4
Q ss_pred Cchhh-cCCCCCcEEecCCceeeeecC-----CCCCCCCcEEEeecccccccCC--hhhhcCCCCcEEecCCCcCCCCCC
Q 047624 262 IPSEL-RNLVNLELLELGDNQFTGRIP-----GRNLTSLAILVFVENMLEGSIP--SSLGKCQNLILLDLSNNNLSGTIP 333 (353)
Q Consensus 262 ~~~~~-~~~~~L~~L~l~~n~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~ 333 (353)
+|..+ .++++|++|++++|.+.+..+ ...+++|++|++++|++.+..+ ..+..+++|+.|++++|+++ .+|
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence 55544 457777777777777665331 2456677777777776653321 34666677777777777776 566
Q ss_pred cccccccccceEEecCCCCC
Q 047624 334 TEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 334 ~~~~~l~~l~~~l~l~~~~~ 353 (353)
..+..+++| ++|++++|+|
T Consensus 404 ~~~~~~~~L-~~L~Ls~N~l 422 (549)
T 2z81_A 404 DSCQWPEKM-RFLNLSSTGI 422 (549)
T ss_dssp SCCCCCTTC-CEEECTTSCC
T ss_pred hhhcccccc-cEEECCCCCc
Confidence 666666666 6666666653
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-33 Score=260.78 Aligned_cols=308 Identities=16% Similarity=0.142 Sum_probs=250.9
Q ss_pred cCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEE
Q 047624 21 HCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFI 100 (353)
Q Consensus 21 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 100 (353)
.+.+++.++++++.+..+.+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..++.+++|+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45788999999988887767777888999999999998886666788899999999999998887777778889999999
Q ss_pred EeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcc
Q 047624 101 GFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGF 180 (353)
Q Consensus 101 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 180 (353)
++++|.+....+..+..+++|++|++++|.+....+..+. .+++|+.|++++|.+... .+..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-TCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh-cCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 9999988844445568889999999999988744444444 788999999999888743 356688899999999877
Q ss_pred eeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccC
Q 047624 181 SGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFG 260 (353)
Q Consensus 181 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 260 (353)
... ...++|+.|+++.|.+..... ...++|+.|++++|.+.+ +.++..++ +|++|++++|.+.+
T Consensus 205 ~~l----~~~~~L~~L~ls~n~l~~~~~---------~~~~~L~~L~L~~n~l~~--~~~l~~l~-~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 205 STL----AIPIAVEELDASHNSINVVRG---------PVNVELTILKLQHNNLTD--TAWLLNYP-GLVEVDLSYNELEK 268 (597)
T ss_dssp SEE----ECCTTCSEEECCSSCCCEEEC---------SCCSCCCEEECCSSCCCC--CGGGGGCT-TCSEEECCSSCCCE
T ss_pred ccc----cCCchhheeeccCCccccccc---------ccCCCCCEEECCCCCCCC--ChhhccCC-CCCEEECCCCccCC
Confidence 653 345678899998887754221 123689999999998875 35666674 99999999999987
Q ss_pred CCchhhcCCCCCcEEecCCceeeeecCC-CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccc
Q 047624 261 NIPSELRNLVNLELLELGDNQFTGRIPG-RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGL 339 (353)
Q Consensus 261 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l 339 (353)
..|..+..+++|++|++++|.+.+.... ..+++|+.|++++|.+. .+|..+..+++|+.|++++|++++. | +..+
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~ 344 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTH 344 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTT
T ss_pred CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhc
Confidence 7888999999999999999999876544 45899999999999998 6888889999999999999999854 3 6678
Q ss_pred cccceEEecCCCCC
Q 047624 340 SSLSIYLDLSQNQL 353 (353)
Q Consensus 340 ~~l~~~l~l~~~~~ 353 (353)
++| ++|+|++|++
T Consensus 345 ~~L-~~L~l~~N~~ 357 (597)
T 3oja_B 345 HTL-KNLTLSHNDW 357 (597)
T ss_dssp CCC-SEEECCSSCE
T ss_pred CCC-CEEEeeCCCC
Confidence 999 8999999974
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.2e-34 Score=258.60 Aligned_cols=297 Identities=22% Similarity=0.222 Sum_probs=243.9
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
+++|++++|.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 57899999999988888999999999999999999888899999999999999999999855556789999999999999
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccc
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPI 160 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 160 (353)
|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++......+++|+.|++++|.+....
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 9998878888999999999999999998777778999999999999999987 555554457999999999999998766
Q ss_pred cccccCCCCccEEecCCCcceeeC-CCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCch
Q 047624 161 PASISNASNLMRLTIPQNGFSGKV-PSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPE 239 (353)
Q Consensus 161 ~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 239 (353)
+..+..+++|++|++++|...+.. .......+|+.|+++.|.+...+ ...+..+++|+.|++++|.+.+..+.
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP------YLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC------HHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC------HHHhcCccccCeeECCCCcCCccChh
Confidence 778889999999999998765433 33445568888888888776432 23456677888888888877765555
Q ss_pred hHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeeccccc
Q 047624 240 AVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLE 305 (353)
Q Consensus 240 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~ 305 (353)
.+..++ +|++|++++|.+.+..+.++.++++|++|++++|.+++..+. ..+++|++|++++|++.
T Consensus 267 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 267 MLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCTTCT-TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred hccccc-cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 566664 788888888887766677777888888888888877754432 45677888888777765
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.8e-32 Score=236.15 Aligned_cols=299 Identities=27% Similarity=0.387 Sum_probs=248.4
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
|++|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+. .+ +.+..+++|++|++++
T Consensus 46 L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~-~~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 46 ITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DI-SALQNLTNLRELYLNE 119 (347)
T ss_dssp CSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CC-GGGTTCTTCSEEECTT
T ss_pred ccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cc-hHHcCCCcCCEEECcC
Confidence 5889999999884 44 38899999999999999875543 899999999999999987 34 4699999999999999
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccc
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPI 160 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 160 (353)
|.+.. .+. +..+++|+.|++++|......+ .+..+++|++|++++|.+. ..+. + ..+++|+++++++|.+.+.
T Consensus 120 n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~-~-~~l~~L~~L~l~~n~l~~~- 192 (347)
T 4fmz_A 120 DNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP-I-ANLTDLYSLSLNYNQIEDI- 192 (347)
T ss_dssp SCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG-G-GGCTTCSEEECTTSCCCCC-
T ss_pred CcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh-h-ccCCCCCEEEccCCccccc-
Confidence 99874 343 8899999999999997664444 4889999999999999986 3333 3 3789999999999998743
Q ss_pred cccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchh
Q 047624 161 PASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEA 240 (353)
Q Consensus 161 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 240 (353)
+. +..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+.+.. .+..+++|++|++++|.+.+. ..
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS--------PLANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--------GGTTCTTCCEEECCSSCCCCC--GG
T ss_pred cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCc--------chhcCCCCCEEECCCCccCCC--hh
Confidence 33 7889999999999999887655 888999999999999886532 267889999999999988753 35
Q ss_pred HhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhcCCCC
Q 047624 241 VGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNL 318 (353)
Q Consensus 241 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 318 (353)
+..+ ++|++|++++|.+.+ . ..+..+++|++|++++|.+.+..+. ..+++|+.|++++|++++..| +..+++|
T Consensus 261 ~~~l-~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 261 VKDL-TKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp GTTC-TTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred HhcC-CCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence 5566 499999999999974 3 4688999999999999998765543 678999999999999986555 8899999
Q ss_pred cEEecCCCcCC
Q 047624 319 ILLDLSNNNLS 329 (353)
Q Consensus 319 ~~l~l~~n~~~ 329 (353)
+.|++++|+++
T Consensus 336 ~~L~l~~N~i~ 346 (347)
T 4fmz_A 336 DSADFANQVIK 346 (347)
T ss_dssp SEESSSCC---
T ss_pred ceeehhhhccc
Confidence 99999999986
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.6e-31 Score=238.73 Aligned_cols=294 Identities=17% Similarity=0.206 Sum_probs=179.6
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
|++|++++|.+++. | .+..+++|++|++++|.+.+. + +..+++|++|++++|.+.+ ++ +..+++|++|++++
T Consensus 44 L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 44 LTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp CCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCS
T ss_pred CCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCC
Confidence 46677777777653 3 466777777777777776643 2 6677777777777777663 22 66777777777777
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccc
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPI 160 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 160 (353)
|.+.+ ++ +..+++|+.|++++|.+.+ ++ +..+++|++|+++.|...+.++ + ..+++|+.|++++|.+.. +
T Consensus 116 N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 116 NKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD--V-TPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp SCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC--C-TTCTTCCEEECCSSCCCC-C
T ss_pred CcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc--c-ccCCcCCEEECCCCccce-e
Confidence 77664 22 6667777777777777764 22 5666777777777775433332 2 256677777777777663 3
Q ss_pred cccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchh
Q 047624 161 PASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEA 240 (353)
Q Consensus 161 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 240 (353)
+ +..+++|++|++++|.+++. .+..+++|+.|+++.|.+.+.+ +..+++|+.|++++|.+.+..+..
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip---------~~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID---------VTPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC---------CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC---------ccccCCCCEEEeeCCcCCCcCHHH
Confidence 3 56677777777777776654 3666677777777777665421 445667777777777766543222
Q ss_pred Hhhhc------ccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecC----------CCCCCCCcEEEeecccc
Q 047624 241 VGNLS------TRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIP----------GRNLTSLAILVFVENML 304 (353)
Q Consensus 241 ~~~~~------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~----------~~~~~~L~~L~l~~~~~ 304 (353)
+..+. .+|+.+++++|.+.+.+| ++.+++|++|++++|...+..+ ...+++|+.|++++|++
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l 330 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL 330 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc
Confidence 21110 123333333333333333 3456677777777775443322 24456667777777766
Q ss_pred cccCChhhhcCCCCcEEecCCCcCCC
Q 047624 305 EGSIPSSLGKCQNLILLDLSNNNLSG 330 (353)
Q Consensus 305 ~~~~~~~~~~~~~L~~l~l~~n~~~~ 330 (353)
++ ++ +..+++|+.|++++|++++
T Consensus 331 ~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 331 TE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp SC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred cc-cc--cccCCcCcEEECCCCCCCC
Confidence 64 32 6666677777777776664
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.1e-31 Score=246.10 Aligned_cols=328 Identities=20% Similarity=0.211 Sum_probs=239.1
Q ss_pred CCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEe
Q 047624 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGF 102 (353)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 102 (353)
+++++|++++|.+..+.+.+|.++++|++|++++|.+.+..+.+|..+++|++|++++|.+....+..|..+++|+.|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999888889999999999999999998666778999999999999999998767778999999999999
Q ss_pred CCCcCCCCCchhhcCCCCCCEEEcCCCCCCCC-CCccccCCCCCCCEEeccCccccccccccccCC--------------
Q 047624 103 GANKLSGEIPSSIYNLSSLSNFDFPVNQLQGG-LPTDLGFTLPNLERLNVGDNQFTGPIPASISNA-------------- 167 (353)
Q Consensus 103 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-------------- 167 (353)
++|.+.+..+..+..+++|++|++++|.+... .+..+. .++.|++|++++|.+....+..+..+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999866666789999999999999998643 334443 78999999999887653322221110
Q ss_pred --------------------------------------------------------------------------------
Q 047624 168 -------------------------------------------------------------------------------- 167 (353)
Q Consensus 168 -------------------------------------------------------------------------------- 167 (353)
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence
Q ss_pred -------------------------------------CCccEEecCCCcceeeC--------------------CCcccc
Q 047624 168 -------------------------------------SNLMRLTIPQNGFSGKV--------------------PSLENL 190 (353)
Q Consensus 168 -------------------------------------~~L~~L~l~~~~~~~~~--------------------~~~~~~ 190 (353)
..++.|++.+|.+.... .....+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 01111222221111100 001123
Q ss_pred cCccEEEEeeccCCCCCcchhH-------------------HHhhhcccCCccEEEccCCcCCccCch-hHhhhcccCcE
Q 047624 191 HKLQWVVIAVNHLGNGEKDDLE-------------------FVNSLVNAYGLELLEINTNNFGGMLPE-AVGNLSTRIRI 250 (353)
Q Consensus 191 ~~L~~l~l~~~~~~~~~~~~~~-------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~ 250 (353)
++++.+.++.|.+......... ....+..++.++.+++..+......+. .+... ++++.
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l-~~l~~ 449 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIY 449 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC-TTCCE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccc-ccccc
Confidence 4555555555544221111000 011222344555555555544333222 23334 48888
Q ss_pred EEecCccccCCCchhhcCCCCCcEEecCCceeeee-cC--CCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCc
Q 047624 251 LRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGR-IP--GRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNN 327 (353)
Q Consensus 251 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 327 (353)
++++.|.+....+..+..++.|++|++++|.+... .+ ...+++|+.|++++|++.+..|..|.++++|++|+|++|+
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 99999988877788888999999999999986543 33 2678999999999999998889999999999999999999
Q ss_pred CCCCCCcccccccccceEEecCCCCC
Q 047624 328 LSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 328 ~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+++..|..|.++++| ++|+|++|+|
T Consensus 530 l~~l~~~~~~~l~~L-~~L~Ls~N~l 554 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSL-QVLDYSLNHI 554 (635)
T ss_dssp CCBCCCGGGTTCTTC-CEEECTTSCC
T ss_pred CCCCChhHHhCCCCC-CEEECCCCcC
Confidence 998888999999999 8999999986
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-31 Score=234.53 Aligned_cols=286 Identities=18% Similarity=0.214 Sum_probs=245.0
Q ss_pred CCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEE
Q 047624 45 SLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNF 124 (353)
Q Consensus 45 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 124 (353)
.++++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46899999999999884333457889999999999999987777789999999999999999997777788999999999
Q ss_pred EcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCC
Q 047624 125 DFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLG 204 (353)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 204 (353)
++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.++.. .+..+++++.+.++.|.+.
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccccc
Confidence 99999998 67776655799999999999999876677788999999999999998865 3677899999999988764
Q ss_pred CCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeee
Q 047624 205 NGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTG 284 (353)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 284 (353)
. +...+.++.+++++|.+... +.. .+++|++|++++|.+++. .++..+++|++|++++|.+.+
T Consensus 200 ~-----------~~~~~~L~~L~l~~n~l~~~-~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 200 T-----------LAIPIAVEELDASHNSINVV-RGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp E-----------EECCSSCSEEECCSSCCCEE-ECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred c-----------cCCCCcceEEECCCCeeeec-ccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 3 34556899999999988743 322 235999999999999743 578899999999999999987
Q ss_pred ecCC--CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 285 RIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 285 ~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
..+. ..+++|++|++++|.+.+ ++..+..+++|+.|++++|+++ .+|..+..+++| ++|++++|+|
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L-~~L~L~~N~i 330 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL-ENLYLDHNSI 330 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC-SEEECCSSCC
T ss_pred cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcC-CEEECCCCcc
Confidence 7554 678999999999999984 5666788999999999999999 678888999999 8999999986
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=7.6e-31 Score=235.67 Aligned_cols=306 Identities=17% Similarity=0.191 Sum_probs=250.9
Q ss_pred ccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhh
Q 047624 12 GGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETL 91 (353)
Q Consensus 12 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 91 (353)
.+..+..+..+++|++|+++++.+.+. | .+..+++|++|++++|.+.+ ++ +..+++|++|++++|.+.+. + +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--c
Confidence 344455788899999999999998864 4 68899999999999999984 43 88999999999999999853 3 8
Q ss_pred hccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCcc
Q 047624 92 GELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLM 171 (353)
Q Consensus 92 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 171 (353)
..+++|+.|++++|.+.+ ++ +..+++|++|++++|.+.+ ++ + ..+++|++|++++|.....+ .+..+++|+
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l-~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--V-SHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--C-TTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--c-ccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 899999999999999984 44 7889999999999999874 43 3 37899999999999654344 477899999
Q ss_pred EEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEE
Q 047624 172 RLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRIL 251 (353)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 251 (353)
+|++++|.+++.. +..+++|+.+.++.|.+.+. .+..+++|+.|++++|.+.+ +| +..+ ++|+.|
T Consensus 174 ~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l-~~L~~L 238 (457)
T 3bz5_A 174 TLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFLDCSSNKLTE-ID--VTPL-TQLTYF 238 (457)
T ss_dssp EEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---------CCTTCTTCSEEECCSSCCSC-CC--CTTC-TTCSEE
T ss_pred EEECCCCccceec--cccCCCCCEEECcCCcCCee---------ccccCCCCCEEECcCCcccc-cC--cccc-CCCCEE
Confidence 9999999998854 78899999999999988763 25678999999999999986 45 5555 499999
Q ss_pred EecCccccCCCchhhcCCC-------CCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCCh--------hhhcCC
Q 047624 252 RVGNNQLFGNIPSELRNLV-------NLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPS--------SLGKCQ 316 (353)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~-------~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~ 316 (353)
++++|.+++..+..+..+. +|+.|++++|.+.+..+...+++|+.|++++|...+.+|. .+..++
T Consensus 239 ~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~ 318 (457)
T 3bz5_A 239 DCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP 318 (457)
T ss_dssp ECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred EeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcc
Confidence 9999999865444444333 4566677777766667777889999999999987655443 256778
Q ss_pred CCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 317 NLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 317 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+|+.|++++|++++ ++ +..+++| ++|++++|+|
T Consensus 319 ~L~~L~L~~N~l~~-l~--l~~l~~L-~~L~l~~N~l 351 (457)
T 3bz5_A 319 KLVYLYLNNTELTE-LD--VSHNTKL-KSLSCVNAHI 351 (457)
T ss_dssp TCCEEECTTCCCSC-CC--CTTCTTC-SEEECCSSCC
T ss_pred cCCEEECCCCcccc-cc--cccCCcC-cEEECCCCCC
Confidence 99999999999997 43 8899999 8999999986
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.8e-30 Score=241.62 Aligned_cols=286 Identities=18% Similarity=0.211 Sum_probs=247.2
Q ss_pred CCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEE
Q 047624 45 SLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNF 124 (353)
Q Consensus 45 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 124 (353)
.+.+++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46789999999999884444567889999999999999987777789999999999999999997777788999999999
Q ss_pred EcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCC
Q 047624 125 DFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLG 204 (353)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 204 (353)
++++|.+. .++..++..+++|+.|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.++++.|.+.
T Consensus 129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCccc
Confidence 99999998 67766555899999999999999877777889999999999999998865 3677899999999988765
Q ss_pred CCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeee
Q 047624 205 NGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTG 284 (353)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 284 (353)
+ +...+.|+.|++++|.+....+ . .+++|+.|++++|.+++ +.++..+++|++|++++|.+.+
T Consensus 206 ~-----------l~~~~~L~~L~ls~n~l~~~~~-~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 206 T-----------LAIPIAVEELDASHNSINVVRG-P---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp E-----------EECCTTCSEEECCSSCCCEEEC-S---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred c-----------ccCCchhheeeccCCccccccc-c---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 3 3455689999999998864322 1 23589999999999975 4788999999999999999988
Q ss_pred ecCC--CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 285 RIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 285 ~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
..+. ..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++ .+|..+..+++| ++|+|++|+|
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L-~~L~L~~N~l 336 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL-ENLYLDHNSI 336 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC-SEEECCSSCC
T ss_pred CCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC-CEEECCCCCC
Confidence 7654 678999999999999985 6777788999999999999999 788889999999 8999999986
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=1.9e-29 Score=226.38 Aligned_cols=262 Identities=26% Similarity=0.346 Sum_probs=151.8
Q ss_pred CCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEc
Q 047624 47 SKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDF 126 (353)
Q Consensus 47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 126 (353)
++|++|++++|.+. .+| .+..+++|++|++++|.+.+ +|.. .++|+.|++++|.+.+ +| .+..+++|+.|++
T Consensus 131 ~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 35555555555555 244 35555666666666655542 3322 2355666666665552 33 3555666666666
Q ss_pred CCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCC
Q 047624 127 PVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNG 206 (353)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 206 (353)
++|.+. .++.. .++|++|++++|.+. .++ .+..+++|++|++++|.+.+... ..++|+.++++.|.+.+.
T Consensus 203 ~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 203 DNNSLK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSCC
T ss_pred CCCcCC-cCCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCccccc
Confidence 666554 23321 235666666666655 344 35566666666666666654332 235666666666655442
Q ss_pred CcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCC-CCCcEEecCCceeeee
Q 047624 207 EKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNL-VNLELLELGDNQFTGR 285 (353)
Q Consensus 207 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ 285 (353)
+. .+++|+.+++++|.+.+. ...+++|++|++++|.+.+ ++ .. ++|++|++++|.+.+.
T Consensus 273 ~~----------~~~~L~~L~ls~N~l~~l-----~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~l 332 (454)
T 1jl5_A 273 PE----------LPQSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIEL 332 (454)
T ss_dssp CC----------CCTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCC
T ss_pred Cc----------ccCcCCEEECcCCccCcc-----cCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCccccc
Confidence 21 125677777777766541 1223477777777777652 22 23 5888999999888753
Q ss_pred cCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCC--CCCcccccc-------------cccceEEecCC
Q 047624 286 IPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSG--TIPTEVIGL-------------SSLSIYLDLSQ 350 (353)
Q Consensus 286 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~l-------------~~l~~~l~l~~ 350 (353)
+ ..+++|+.|++++|.+. .+|. .+++|+.|++++|++++ .+|..+..+ ++| ++|++++
T Consensus 333 -p-~~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L-~~L~ls~ 405 (454)
T 1jl5_A 333 -P-ALPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL-KQLHVET 405 (454)
T ss_dssp -C-CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred -c-ccCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcC-CEEECCC
Confidence 3 24688999999999888 4665 46889999999999998 788888887 788 8999998
Q ss_pred CCC
Q 047624 351 NQL 353 (353)
Q Consensus 351 ~~~ 353 (353)
|++
T Consensus 406 N~l 408 (454)
T 1jl5_A 406 NPL 408 (454)
T ss_dssp ---
T ss_pred CcC
Confidence 875
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.5e-34 Score=259.27 Aligned_cols=281 Identities=18% Similarity=0.174 Sum_probs=130.6
Q ss_pred CccEEEecCCccCC----ccCccccCCCcccEeecCCCcccccChhhhh-----ccccccEEEeCCCcCCCC----Cchh
Q 047624 48 KLRTLAVHHNNLSG----EIPSSFGNLSSLERLSAAANQFVGQIPETLG-----ELKRMRFIGFGANKLSGE----IPSS 114 (353)
Q Consensus 48 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~ 114 (353)
+|++|++++|.+.. .++..+..+++|++|++++|.+....+..+. ..++|+.|++++|.++.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 34555555444432 2344444455555555555444322222221 123455555555544422 1233
Q ss_pred hcCCCCCCEEEcCCCCCCCCCCcccc----CCCCCCCEEeccCcccccc----ccccccCCCCccEEecCCCcceeeC--
Q 047624 115 IYNLSSLSNFDFPVNQLQGGLPTDLG----FTLPNLERLNVGDNQFTGP----IPASISNASNLMRLTIPQNGFSGKV-- 184 (353)
Q Consensus 115 l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~-- 184 (353)
+..+++|++|++++|.+.......+. ...++|+.|++++|.+... ++..+..+++|++|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 33445555555555544321111111 1133555555555554431 2333444555555555555544321
Q ss_pred ---CC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhh----cccCcEEEecCc
Q 047624 185 ---PS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNL----STRIRILRVGNN 256 (353)
Q Consensus 185 ---~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~ 256 (353)
+. ...+++|+.|+++.|.++.... ..+...+..+++|+.|++++|.+.+..+..+... .++|++|++++|
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGC--GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHH--HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHH--HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 11 1234555666665554432110 0133344455666666666665543333222221 135666666666
Q ss_pred cccCC----CchhhcCCCCCcEEecCCceeeeecCC-------CCCCCCcEEEeecccccc----cCChhhhcCCCCcEE
Q 047624 257 QLFGN----IPSELRNLVNLELLELGDNQFTGRIPG-------RNLTSLAILVFVENMLEG----SIPSSLGKCQNLILL 321 (353)
Q Consensus 257 ~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~-------~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l 321 (353)
.+++. ++.++..+++|++|++++|.+.+..+. ...++|++|++++|.+++ .++..+..+++|++|
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 65533 234445556666666666655533211 124566666666666654 455555566666666
Q ss_pred ecCCCcCCC
Q 047624 322 DLSNNNLSG 330 (353)
Q Consensus 322 ~l~~n~~~~ 330 (353)
++++|++++
T Consensus 404 ~l~~N~i~~ 412 (461)
T 1z7x_W 404 DLSNNCLGD 412 (461)
T ss_dssp ECCSSSCCH
T ss_pred ECCCCCCCH
Confidence 666666653
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.2e-29 Score=219.36 Aligned_cols=288 Identities=15% Similarity=0.176 Sum_probs=157.9
Q ss_pred CCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeC
Q 047624 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFG 103 (353)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 103 (353)
+++.++++++.+.. +|..+. +.+++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 45555555555442 232222 355555555555553333355555555555555555554445555555555555555
Q ss_pred CCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccc--cccccccCCCCccEEecCCCcce
Q 047624 104 ANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTG--PIPASISNASNLMRLTIPQNGFS 181 (353)
Q Consensus 104 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~ 181 (353)
+|.+. .+|..+. ++|++|++++|.+. .++......+++|+.+++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 55554 3333222 45555555555544 2222222244555555555554431 22333444445555555444443
Q ss_pred eeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCC
Q 047624 182 GKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGN 261 (353)
Q Consensus 182 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 261 (353)
..+..+ .++|+.|++++|.+.+..+..+..++ +|++|++++|.+.+.
T Consensus 185 ~l~~~~--------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 185 TIPQGL--------------------------------PPSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAV 231 (330)
T ss_dssp SCCSSC--------------------------------CTTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEE
T ss_pred cCCccc--------------------------------cccCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCcee
Confidence 322211 14566666666666655555555553 677777777766655
Q ss_pred CchhhcCCCCCcEEecCCceeeeecC-CCCCCCCcEEEeecccccccCChhhhc------CCCCcEEecCCCcCCC--CC
Q 047624 262 IPSELRNLVNLELLELGDNQFTGRIP-GRNLTSLAILVFVENMLEGSIPSSLGK------CQNLILLDLSNNNLSG--TI 332 (353)
Q Consensus 262 ~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~l~l~~n~~~~--~~ 332 (353)
.+.++..+++|++|++++|.+..... ...+++|++|++++|++++..+..|.. .+.++.+++++|++.. ..
T Consensus 232 ~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~ 311 (330)
T 1xku_A 232 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311 (330)
T ss_dssp CTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred ChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence 55566667777777777776663322 245667777777777776544444432 4678899999998863 56
Q ss_pred CcccccccccceEEecCCCC
Q 047624 333 PTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 333 ~~~~~~l~~l~~~l~l~~~~ 352 (353)
|..|..++++ +.++|++|+
T Consensus 312 ~~~f~~~~~l-~~l~L~~N~ 330 (330)
T 1xku_A 312 PSTFRCVYVR-AAVQLGNYK 330 (330)
T ss_dssp GGGGTTCCCG-GGEEC----
T ss_pred ccccccccce-eEEEecccC
Confidence 6788889999 799999885
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.6e-30 Score=221.10 Aligned_cols=288 Identities=19% Similarity=0.252 Sum_probs=169.2
Q ss_pred CCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeC
Q 047624 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFG 103 (353)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 103 (353)
+++.++++++.+.. +|..+ .+++++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 57777777777663 34433 2577778888777775555677777788888888777776667777777777777777
Q ss_pred CCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccc--cccccccCCCCccEEecCCCcce
Q 047624 104 ANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTG--PIPASISNASNLMRLTIPQNGFS 181 (353)
Q Consensus 104 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~ 181 (353)
+|.+. .+|..+. ++|++|++++|.+. .++...+..+++|+.|++++|.+.. ..+..+..+ +|++|++++|.++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 77776 4444333 67777777777776 4444433467777777777776642 334444445 6777777777666
Q ss_pred eeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCC
Q 047624 182 GKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGN 261 (353)
Q Consensus 182 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 261 (353)
..+..+. ++|+.|+++.|.+.+.. ...+..+++|+.|++++|.+.+..+.++..++ +|++|++++|.+. .
T Consensus 186 ~l~~~~~--~~L~~L~l~~n~i~~~~------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 186 GIPKDLP--ETLNELHLDHNKIQAIE------LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLS-R 255 (332)
T ss_dssp SCCSSSC--SSCSCCBCCSSCCCCCC------TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECCSSCCC-B
T ss_pred ccCcccc--CCCCEEECCCCcCCccC------HHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECCCCcCe-e
Confidence 5433222 45555555555443321 11233344444444444444433333333332 4444444444444 3
Q ss_pred CchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCChhhhc------CCCCcEEecCCCcCC--CCCC
Q 047624 262 IPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPSSLGK------CQNLILLDLSNNNLS--GTIP 333 (353)
Q Consensus 262 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~l~l~~n~~~--~~~~ 333 (353)
+|..+..++ +|+.|++++|++++..+..+.. .+.|+.+++++|++. +..|
T Consensus 256 lp~~l~~l~----------------------~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 256 VPAGLPDLK----------------------LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp CCTTGGGCT----------------------TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred cChhhhcCc----------------------cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 444444444 4555555555444333333332 356788888888776 5666
Q ss_pred cccccccccceEEecCCCC
Q 047624 334 TEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 334 ~~~~~l~~l~~~l~l~~~~ 352 (353)
..|..++++ +.+++++|.
T Consensus 314 ~~~~~l~~L-~~l~l~~n~ 331 (332)
T 2ft3_A 314 ATFRCVTDR-LAIQFGNYK 331 (332)
T ss_dssp GGGTTBCCS-TTEEC----
T ss_pred ccccccchh-hhhhccccc
Confidence 777788888 788888764
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.4e-30 Score=223.05 Aligned_cols=248 Identities=28% Similarity=0.435 Sum_probs=163.3
Q ss_pred CCccEEEecCCccCC--ccCccccCCCcccEeecCC-CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCE
Q 047624 47 SKLRTLAVHHNNLSG--EIPSSFGNLSSLERLSAAA-NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSN 123 (353)
Q Consensus 47 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 123 (353)
.++++|+++++.+.+ .+|..+..+++|++|++++ +.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777765 5666777777777777774 6666566666666777777777766666556666666666666
Q ss_pred EEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCC-CccEEecCCCcceeeCCCcccccCccEEEEeecc
Q 047624 124 FDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNAS-NLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202 (353)
Q Consensus 124 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~ 202 (353)
|++++|.+.+.++..+. .+++|++|++++|.+...++..+..++ +|++|++++|.+
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l---------------------- 186 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL---------------------- 186 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE----------------------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee----------------------
Confidence 66666655544444333 345555555555554434444444443 444444444433
Q ss_pred CCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCcee
Q 047624 203 LGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQF 282 (353)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 282 (353)
.+..|..+... +|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 187 -------------------------------~~~~~~~~~~l--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 187 -------------------------------TGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp -------------------------------EEECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred -------------------------------eccCChHHhCC--cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 33334444443 267777777776666667777777777777777777
Q ss_pred eeecCC-CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCC
Q 047624 283 TGRIPG-RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 283 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~ 352 (353)
.+..+. ..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|.. ..++++ +++++++|+
T Consensus 234 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L-~~l~l~~N~ 302 (313)
T 1ogq_A 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF-DVSAYANNK 302 (313)
T ss_dssp CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGS-CGGGTCSSS
T ss_pred eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccccc-ChHHhcCCC
Confidence 654443 55678888888888887778888888888999999999888888876 788888 788888886
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=7.7e-31 Score=224.67 Aligned_cols=248 Identities=27% Similarity=0.448 Sum_probs=187.3
Q ss_pred CCCcEEEcccCcccc--cCCcccCCCCCccEEEecC-CccCCccCccccCCCcccEeecCCCcccccChhhhhccccccE
Q 047624 23 VNLESLFLAHNELVG--KVPGKLGSLSKLRTLAVHH-NNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRF 99 (353)
Q Consensus 23 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 99 (353)
.++++|+++++.+.+ .+|..+.++++|++|++++ +.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999998886 6788899999999999995 8887788889999999999999999998788888999999999
Q ss_pred EEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCC-CCCEEeccCccccccccccccCCCCccEEecCCC
Q 047624 100 IGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLP-NLERLNVGDNQFTGPIPASISNASNLMRLTIPQN 178 (353)
Q Consensus 100 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 178 (353)
|++++|.+.+..|..+..+++|++|++++|.+.+.++..+. .++ .|+.|++++|.+....+..+..++ |++|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 99999999878888899999999999999998767777776 465 899999999998877888888886 999999999
Q ss_pred cceeeCCC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCcc
Q 047624 179 GFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQ 257 (353)
Q Consensus 179 ~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 257 (353)
.+++..+. +..+++|+.|+++.|.+.+. ...+..+++|++|++++|.+.+..|.++..++ +|++|++++|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~ 279 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFD-------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK-FLHSLNVSFNN 279 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCB-------GGGCCCCTTCCEEECCSSCCEECCCGGGGGCT-TCCEEECCSSE
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeee-------cCcccccCCCCEEECcCCcccCcCChHHhcCc-CCCEEECcCCc
Confidence 98876554 77888888888888776431 11133445555555555555544554444443 55555555555
Q ss_pred ccCCCchhhcCCCCCcEEecCCce
Q 047624 258 LFGNIPSELRNLVNLELLELGDNQ 281 (353)
Q Consensus 258 ~~~~~~~~~~~~~~L~~L~l~~n~ 281 (353)
+++.+|.. ..+++|+.+++++|+
T Consensus 280 l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 280 LCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ccccCCCC-ccccccChHHhcCCC
Confidence 54444443 444555555555554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8e-30 Score=220.56 Aligned_cols=262 Identities=20% Similarity=0.252 Sum_probs=206.0
Q ss_pred CccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcC
Q 047624 48 KLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFP 127 (353)
Q Consensus 48 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 127 (353)
+++.++++++.+. .+|..+. +++++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6899999999887 6777663 689999999999987777789999999999999999987778889999999999999
Q ss_pred CCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceee--CC-CcccccCccEEEEeeccCC
Q 047624 128 VNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGK--VP-SLENLHKLQWVVIAVNHLG 204 (353)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~-~~~~~~~L~~l~l~~~~~~ 204 (353)
+|.+. .++..+. ++|++|++++|.+....+..+..+++|++|++++|.+... .+ .+..+
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-------------- 172 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-------------- 172 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--------------
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--------------
Confidence 99987 6666543 7899999999988755555678889999999998877531 11 12222
Q ss_pred CCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeee
Q 047624 205 NGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTG 284 (353)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 284 (353)
+|+.+++++|.+.+ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 173 -----------------~L~~L~l~~n~l~~-l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 173 -----------------KLNYLRISEAKLTG-IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp -----------------CCSCCBCCSSBCSS-CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred -----------------ccCEEECcCCCCCc-cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 34555555555442 332221 478888888888876666778888888888888888876
Q ss_pred ecC--CCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccc------cccceEEecCCCCC
Q 047624 285 RIP--GRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGL------SSLSIYLDLSQNQL 353 (353)
Q Consensus 285 ~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l------~~l~~~l~l~~~~~ 353 (353)
..+ ...+++|+.|++++|++. .+|..+..+++|+.|++++|++++..+..|.+. +.+ +.|++++|++
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l-~~L~l~~N~~ 306 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY-NGISLFNNPV 306 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCB-SEEECCSSSS
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccc-cceEeecCcc
Confidence 654 256788999999988888 788889999999999999999997777777653 678 8999999975
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.1e-29 Score=217.82 Aligned_cols=285 Identities=20% Similarity=0.300 Sum_probs=218.2
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
++.++++++.+. .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 577899999887 4555443 7899999999999987777899999999999999999877789999999999999999
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCC--CCCccccCCCCCCCEEeccCccccc
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQG--GLPTDLGFTLPNLERLNVGDNQFTG 158 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~ 158 (353)
|.+. .+|..+. ++|+.|++++|.+....+..+..+++|+.|++++|.+.. ..+..+ ..+++|+.|++++|.+.
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCC-
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc-cCCCCcCEEECCCCccc-
Confidence 9987 4554443 799999999999997777788999999999999998852 233333 37899999999999987
Q ss_pred cccccccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccC
Q 047624 159 PIPASISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGML 237 (353)
Q Consensus 159 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 237 (353)
.++..+. ++|++|++++|.+.+..+. +..+++|+.|+++ +|.+.+..
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls------------------------------~n~l~~~~ 232 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS------------------------------FNSISAVD 232 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECC------------------------------SSCCCEEC
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECC------------------------------CCcCceeC
Confidence 4555443 8999999999988775432 4555555555554 44444344
Q ss_pred chhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--------CCCCCCcEEEeecccccc--c
Q 047624 238 PEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--------RNLTSLAILVFVENMLEG--S 307 (353)
Q Consensus 238 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~~L~~L~l~~~~~~~--~ 307 (353)
+.++..++ +|++|++++|.+. .+|.++..+++|++|++++|++++..+. ...+.++.+++.+|++.. .
T Consensus 233 ~~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i 310 (330)
T 1xku_A 233 NGSLANTP-HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310 (330)
T ss_dssp TTTGGGST-TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS
T ss_pred hhhccCCC-CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccccc
Confidence 44555553 7888888888877 6777788888888888888888755433 124678889999888753 4
Q ss_pred CChhhhcCCCCcEEecCCCc
Q 047624 308 IPSSLGKCQNLILLDLSNNN 327 (353)
Q Consensus 308 ~~~~~~~~~~L~~l~l~~n~ 327 (353)
.|..|..++.++.+++++|+
T Consensus 311 ~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 311 QPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CGGGGTTCCCGGGEEC----
T ss_pred CccccccccceeEEEecccC
Confidence 45678888999999999884
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.5e-33 Score=250.51 Aligned_cols=348 Identities=18% Similarity=0.164 Sum_probs=262.3
Q ss_pred CcEEEccCCCCccccCc-ccccCCCCcEEEcccCcccc----cCCcccCCCCCccEEEecCCccCCccCccc-cCCC---
Q 047624 1 LRILWLDNNTYGGQIPD-NISHCVNLESLFLAHNELVG----KVPGKLGSLSKLRTLAVHHNNLSGEIPSSF-GNLS--- 71 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~--- 71 (353)
|++|++++++++..... .+..+++|++|++++|.+.. .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence 47899999999865544 37889999999999998763 245667889999999999998864333222 3344
Q ss_pred -cccEeecCCCcccc----cChhhhhccccccEEEeCCCcCCCCCchhhc-----CCCCCCEEEcCCCCCCCCC----Cc
Q 047624 72 -SLERLSAAANQFVG----QIPETLGELKRMRFIGFGANKLSGEIPSSIY-----NLSSLSNFDFPVNQLQGGL----PT 137 (353)
Q Consensus 72 -~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~ 137 (353)
+|++|++++|.+.. .++..+..+++|+.|++++|.+....+..+. ..++|++|++++|.+.... +.
T Consensus 85 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 79999999999873 4577888999999999999998643333222 2568999999999886422 22
Q ss_pred cccCCCCCCCEEeccCcccccccccccc-----CCCCccEEecCCCcceee-----CCCcccccCccEEEEeeccCCCCC
Q 047624 138 DLGFTLPNLERLNVGDNQFTGPIPASIS-----NASNLMRLTIPQNGFSGK-----VPSLENLHKLQWVVIAVNHLGNGE 207 (353)
Q Consensus 138 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~ 207 (353)
.+. .+++|++|++++|.+.+.....+. ..++|++|++++|.++.. ...+..+++|+.|+++.|.+++..
T Consensus 165 ~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 165 VLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 222 478999999999998654333332 367999999999988763 333677899999999998764321
Q ss_pred cchhHHHhh-hcccCCccEEEccCCcCCcc----CchhHhhhcccCcEEEecCccccCCCchhhc-----CCCCCcEEec
Q 047624 208 KDDLEFVNS-LVNAYGLELLEINTNNFGGM----LPEAVGNLSTRIRILRVGNNQLFGNIPSELR-----NLVNLELLEL 277 (353)
Q Consensus 208 ~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l 277 (353)
.. .+... ...++.|+.|++++|.+++. ++..+... ++|++|++++|.+.+..+..+. ..++|++|++
T Consensus 244 ~~--~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 244 MA--ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HH--HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HH--HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 11 11122 23578999999999988864 45555556 4999999999998754333333 2379999999
Q ss_pred CCceeeeecCC------CCCCCCcEEEeecccccccCChhhhc-----CCCCcEEecCCCcCCC----CCCccccccccc
Q 047624 278 GDNQFTGRIPG------RNLTSLAILVFVENMLEGSIPSSLGK-----CQNLILLDLSNNNLSG----TIPTEVIGLSSL 342 (353)
Q Consensus 278 ~~n~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~n~~~~----~~~~~~~~l~~l 342 (353)
++|.+.+.... ..+++|++|++++|.+.+..+..+.. .++|+.|++++|++++ .+|..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 99998754211 45689999999999998665554543 6799999999999996 788889999999
Q ss_pred ceEEecCCCCC
Q 047624 343 SIYLDLSQNQL 353 (353)
Q Consensus 343 ~~~l~l~~~~~ 353 (353)
++|++++|+|
T Consensus 401 -~~L~l~~N~i 410 (461)
T 1z7x_W 401 -RELDLSNNCL 410 (461)
T ss_dssp -CEEECCSSSC
T ss_pred -cEEECCCCCC
Confidence 8999999986
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=2.3e-29 Score=225.86 Aligned_cols=309 Identities=25% Similarity=0.308 Sum_probs=173.5
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCc-------------cEEEecCCccCCccCccc
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKL-------------RTLAVHHNNLSGEIPSSF 67 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~~~~~ 67 (353)
|++|++++|.+ +.+|..+.++++|++|++++|.+.+..|..+.++.+| ++|++++|.+. .+|..
T Consensus 13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~~- 89 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPEL- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCSC-
T ss_pred chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCCC-
Confidence 57889999998 6888889999999999999988877778777776654 77777777665 33331
Q ss_pred cCCCcccEeecCCCcccccChhhh----------------hcc-ccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCC
Q 047624 68 GNLSSLERLSAAANQFVGQIPETL----------------GEL-KRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQ 130 (353)
Q Consensus 68 ~~l~~L~~L~l~~~~~~~~~~~~~----------------~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 130 (353)
.++|++|++++|.+.+ +|..+ ... ++|+.|++++|.+.+ +| .+..+++|++|++++|.
T Consensus 90 --~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 90 --PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp --CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred --cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc
Confidence 2456666666655543 33211 011 355666666665552 44 35566666666666666
Q ss_pred CCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcch
Q 047624 131 LQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDD 210 (353)
Q Consensus 131 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 210 (353)
+. .++.. ..+|++|++++|.+.. ++ .+..+++|++|++++|.+.+.+.. .++|+.++++.|.+...+
T Consensus 165 l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp--- 231 (454)
T 1jl5_A 165 LK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELP--- 231 (454)
T ss_dssp CS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCC---
T ss_pred Cc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCccc---
Confidence 55 33322 2356666666666653 33 456666666666666666543221 246666777666554221
Q ss_pred hHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--
Q 047624 211 LEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG-- 288 (353)
Q Consensus 211 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-- 288 (353)
.+..+++|++|++++|.+.+ +|. .+++|++|++++|.+.+ +|.. .++|++|++++|.+.+....
T Consensus 232 -----~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~ 297 (454)
T 1jl5_A 232 -----ELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPP 297 (454)
T ss_dssp -----CCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCT
T ss_pred -----ccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCC
Confidence 25567788888888887764 332 22578888888887763 4432 36677777777766652211
Q ss_pred ----------------CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCC
Q 047624 289 ----------------RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 289 ----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~ 352 (353)
..+++|+.|++++|++.+ +|.. +++|+.|++++|+++ .+|. .++++ ++|++++|+
T Consensus 298 ~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L-~~L~L~~N~ 368 (454)
T 1jl5_A 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNL-KQLHVEYNP 368 (454)
T ss_dssp TCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTC-CEEECCSSC
T ss_pred cCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhc-cEEECCCCC
Confidence 112466666666666653 4432 467777777777777 4555 36777 778887776
Q ss_pred C
Q 047624 353 L 353 (353)
Q Consensus 353 ~ 353 (353)
+
T Consensus 369 l 369 (454)
T 1jl5_A 369 L 369 (454)
T ss_dssp C
T ss_pred C
Confidence 4
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.4e-27 Score=203.67 Aligned_cols=281 Identities=18% Similarity=0.202 Sum_probs=180.8
Q ss_pred cccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhcccccc
Q 047624 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMR 98 (353)
Q Consensus 19 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 98 (353)
-..|+.....+.+++.+.. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 27 ~~~C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CCEECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 3456666678888888774 444443 4899999999988855555788899999999999988877777788899999
Q ss_pred EEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCc-cccCCCCCCCEEeccCcc-ccccccccccCCCCccEEecC
Q 047624 99 FIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPT-DLGFTLPNLERLNVGDNQ-FTGPIPASISNASNLMRLTIP 176 (353)
Q Consensus 99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~ 176 (353)
.|++++|.+....+..+..+++|++|++++|.+. .++. .....+++|+.|++++|. +....+..+..+++|++|+++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 9999999988544445888899999999999887 5555 444478889999998884 554445667788888888888
Q ss_pred CCcceeeCC-CcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhh--hcccCcEEEe
Q 047624 177 QNGFSGKVP-SLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGN--LSTRIRILRV 253 (353)
Q Consensus 177 ~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l 253 (353)
+|.+.+..+ .+..+++|+.|+++.|.+... ....+..+++|+.|++++|.+.+..+..+.. ..+.++.+++
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILL------LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTH------HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccc------hhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 888877644 377777788887777765321 1112233455666666665554332221111 1123444444
Q ss_pred cCccccC----CCchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCChh-hhcCCCCcEEecCCCcC
Q 047624 254 GNNQLFG----NIPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPSS-LGKCQNLILLDLSNNNL 328 (353)
Q Consensus 254 ~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~ 328 (353)
..+.+.+ .+|.++..+++|++|++++|.+ . .+|.. +..+++|++|++++|++
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l----------------------~-~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQL----------------------K-SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC----------------------C-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCC----------------------C-ccCHHHHhcCCCCCEEEeeCCCc
Confidence 4443332 1233333344444444444333 3 23333 46667777777777777
Q ss_pred CCCC
Q 047624 329 SGTI 332 (353)
Q Consensus 329 ~~~~ 332 (353)
.+..
T Consensus 314 ~~~~ 317 (353)
T 2z80_A 314 DCSC 317 (353)
T ss_dssp CCCH
T ss_pred cCcC
Confidence 6443
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=206.76 Aligned_cols=274 Identities=16% Similarity=0.172 Sum_probs=220.6
Q ss_pred EEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCc
Q 047624 3 ILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ 82 (353)
Q Consensus 3 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 82 (353)
..+.+++.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3567778877 4555443 589999999999987777789999999999999999986677889999999999999999
Q ss_pred ccccChhhhhccccccEEEeCCCcCCCCCch--hhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccc
Q 047624 83 FVGQIPETLGELKRMRFIGFGANKLSGEIPS--SIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPI 160 (353)
Q Consensus 83 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 160 (353)
+....+..+..+++|+.|++++|.+. .++. .+..+++|++|++++|.....++......+++|++|++++|.+....
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 98655556899999999999999998 4444 78889999999999985332444443447899999999999998777
Q ss_pred cccccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCcc---
Q 047624 161 PASISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGM--- 236 (353)
Q Consensus 161 ~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--- 236 (353)
+..+..+++|++|++++|.+...... +..+++|+.|+++.|.+.+....... .......++.++++.+.+.+.
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS---TGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCEEEEESCBCCHHHHH
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc---cccccchhhccccccccccCcchh
Confidence 88899999999999999988655443 45689999999999998775543322 334567788999998887653
Q ss_pred -CchhHhhhcccCcEEEecCccccCCCchh-hcCCCCCcEEecCCceeeee
Q 047624 237 -LPEAVGNLSTRIRILRVGNNQLFGNIPSE-LRNLVNLELLELGDNQFTGR 285 (353)
Q Consensus 237 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~ 285 (353)
+|.++..++ +|++|++++|.++ .+|.. +..+++|++|++++|++.+.
T Consensus 268 ~l~~~l~~l~-~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 268 QVMKLLNQIS-GLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHTCT-TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhHHHHhccc-CCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 456666664 9999999999998 56655 58899999999999998754
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.5e-26 Score=197.79 Aligned_cols=226 Identities=22% Similarity=0.287 Sum_probs=123.5
Q ss_pred CCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccc--ccccccCCCCccEEecCCCcceeeCCCcccccCccEEE
Q 047624 120 SLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGP--IPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVV 197 (353)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 197 (353)
++++|++++|.+. .++...+..+++|+.|++++|.+... .+..+..+++|++|++++|.+......+..+++|+.|+
T Consensus 29 ~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 4444444444443 33333222344444444444443311 12223334444444554444444333344444455554
Q ss_pred EeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccC-CCchhhcCCCCCcEEe
Q 047624 198 IAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFG-NIPSELRNLVNLELLE 276 (353)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ 276 (353)
++.|.+.+... ...+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.+ ..|..+..+++|++|+
T Consensus 108 l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 108 FQHSNLKQMSE-----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp CTTSEEESSTT-----TTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCCccccccc-----chhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 44444332111 12344455666666666665555555555553 67777777776654 3556666677777777
Q ss_pred cCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCccccccc-ccceEEecCCCCC
Q 047624 277 LGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLS-SLSIYLDLSQNQL 353 (353)
Q Consensus 277 l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~-~l~~~l~l~~~~~ 353 (353)
+++|.+.+..+. ..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..|..+..++ ++ ++|++++|++
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L-~~L~L~~N~~ 260 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL-AFLNLTQNDF 260 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC-CEEECTTCCE
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC-CEEEccCCCe
Confidence 777766655332 4566777777777777655555666677777777777777766677777664 66 6777777653
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.3e-26 Score=198.06 Aligned_cols=230 Identities=20% Similarity=0.280 Sum_probs=167.2
Q ss_pred cccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEE
Q 047624 94 LKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRL 173 (353)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 173 (353)
..+++.|+++++.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|++|++++|.+. .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 356777777777776 56666666777777777777766 5665554 5667777777777666 556666666777777
Q ss_pred ecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEE
Q 047624 174 TIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILR 252 (353)
Q Consensus 174 ~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 252 (353)
++++|...+..+. +.. . .....+..+++|+.|++++|.+. .+|..+..++ +|++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~ 212 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLK 212 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT-TCCEEE
T ss_pred ECCCCCCccccChhHhh------c---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCC-CCCEEE
Confidence 7766544433222 111 0 01112445677777777777776 6677777774 888888
Q ss_pred ecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCC
Q 047624 253 VGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSG 330 (353)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 330 (353)
+++|.+. .+|..+..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+
T Consensus 213 L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp EESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred ccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 8888887 5666788888899999988887776654 567889999999888888889889999999999999999999
Q ss_pred CCCcccccccccceEEecCCCC
Q 047624 331 TIPTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 331 ~~~~~~~~l~~l~~~l~l~~~~ 352 (353)
.+|+.+..++++ +.+++..+.
T Consensus 292 ~iP~~l~~L~~L-~~l~l~~~~ 312 (328)
T 4fcg_A 292 RLPSLIAQLPAN-CIILVPPHL 312 (328)
T ss_dssp CCCGGGGGSCTT-CEEECCGGG
T ss_pred hccHHHhhccCc-eEEeCCHHH
Confidence 999999999999 899887653
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.7e-25 Score=206.86 Aligned_cols=268 Identities=25% Similarity=0.283 Sum_probs=188.5
Q ss_pred CCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeC
Q 047624 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFG 103 (353)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 103 (353)
+++.|+++++.+. .+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.+. .+|. .+++|+.|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 5777777777776 3344443 67777777777776 4554 4567777777777766 3443 56777777777
Q ss_pred CCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceee
Q 047624 104 ANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGK 183 (353)
Q Consensus 104 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 183 (353)
+|.+. .++. .+++|+.|++++|.+. .++. .+++|+.|++++|.+.. ++. .+++|+.|++++|.++.+
T Consensus 110 ~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 110 SNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp SCCCC-CCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC
T ss_pred CCcCC-CCCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCC
Confidence 77776 3443 4567777888777776 4443 24677888887777663 332 246777788888777764
Q ss_pred CCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCc
Q 047624 184 VPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIP 263 (353)
Q Consensus 184 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 263 (353)
. ..+++|+.|+++.|.+.+.+. ..++|+.|++++|.+. .++. .+++|++|++++|.++ .+|
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l~~----------~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~-~lp 237 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASLPT----------LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLT-SLP 237 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCS-CCC
T ss_pred c---ccCCCCcEEECCCCCCCCCCC----------ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccC-cCC
Confidence 4 445777788887777654321 2367888888888776 3332 2358999999999887 455
Q ss_pred hhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCccccccc
Q 047624 264 SELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLS 340 (353)
Q Consensus 264 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~ 340 (353)
..+++|++|++++|.+.+... .+++|+.|++++|.+. .+|..+..+++|+.|++++|++++..|..+..++
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 456889999999998875433 7789999999999888 6788899999999999999999877776655443
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=7.6e-26 Score=191.35 Aligned_cols=225 Identities=22% Similarity=0.241 Sum_probs=174.8
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
++++.+++.++ .+|..+ .+++++|+++++.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 35777777777 345433 468999999999888777778888999999999999888666788888999999999998
Q ss_pred c-ccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccc
Q 047624 82 Q-FVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPI 160 (353)
Q Consensus 82 ~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 160 (353)
. +....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+. .++......+++|+.|++++|.+....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccC
Confidence 7 66555777888899999999999888666777888889999999998887 455443447888999999988887554
Q ss_pred cccccCCCCccEEecCCCcceeeCC-CcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCcc
Q 047624 161 PASISNASNLMRLTIPQNGFSGKVP-SLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGM 236 (353)
Q Consensus 161 ~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 236 (353)
+..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+.. ...+..+++|+.+++++|.+...
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP------TEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC------HHHHTTCTTCCEEECCSSCEECS
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC------HHHcccCcccCEEeccCCCccCC
Confidence 4567788899999999988887744 4777888888888888776532 23456677788888888877643
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.3e-28 Score=227.95 Aligned_cols=344 Identities=14% Similarity=0.114 Sum_probs=177.6
Q ss_pred CcEEEccCCCCccccCccccc-CCC-CcEEEcccCcc-cc-cCCcccCCCCCccEEEecCCccCCc----cCccccCCCc
Q 047624 1 LRILWLDNNTYGGQIPDNISH-CVN-LESLFLAHNEL-VG-KVPGKLGSLSKLRTLAVHHNNLSGE----IPSSFGNLSS 72 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~-~~-~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~ 72 (353)
|++|+|++|.+++.....+.. ++. |++|++++|.- .. ..+....++++|++|++++|.+.+. ++..+..+++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 567888888776555555544 344 77777777652 11 1122223567777777777765433 3334455667
Q ss_pred ccEeecCCCccc----ccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCC---C------------
Q 047624 73 LERLSAAANQFV----GQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQ---G------------ 133 (353)
Q Consensus 73 L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~------------ 133 (353)
|++|+++++.+. ..++..+..+++|+.|++++|.+. .++..+..+++|++|+++..... .
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 777777776664 223334456677777777776665 34555566666666666532111 0
Q ss_pred -----------CCCccccCCCCCCCEEeccCcccccccc-ccccCCCCccEEecCCCccee-eCCC-cccccCccEEEEe
Q 047624 134 -----------GLPTDLGFTLPNLERLNVGDNQFTGPIP-ASISNASNLMRLTIPQNGFSG-KVPS-LENLHKLQWVVIA 199 (353)
Q Consensus 134 -----------~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~-~~~~-~~~~~~L~~l~l~ 199 (353)
.++..+ ..+++|++|++++|.+..... ..+..+++|++|+++++ +.+ .... ...+++|+.|+++
T Consensus 273 ~~L~l~~~~~~~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 273 CRLGLSYMGPNEMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CEEEETTCCTTTGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCccccchhHHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEee
Confidence 111111 123444445444444322111 11234444444444421 111 1111 2344555666555
Q ss_pred e-----------ccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEec----CccccCC---
Q 047624 200 V-----------NHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVG----NNQLFGN--- 261 (353)
Q Consensus 200 ~-----------~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~--- 261 (353)
+ +.++ ..........+++|++|++..+.+++..+..+....++|++|+++ .+.+++.
T Consensus 351 ~g~~~~~~~~~~~~~~-----~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVS-----QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp CCCCSSTTSSTTCCCC-----HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred cCccccccccccCccC-----HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 2 1111 112222334466666666665555554444444423467777775 3344421
Q ss_pred --CchhhcCCCCCcEEecCCce--eeeecCC---CCCCCCcEEEeecccccc-cCChhhhcCCCCcEEecCCCcCCCC-C
Q 047624 262 --IPSELRNLVNLELLELGDNQ--FTGRIPG---RNLTSLAILVFVENMLEG-SIPSSLGKCQNLILLDLSNNNLSGT-I 332 (353)
Q Consensus 262 --~~~~~~~~~~L~~L~l~~n~--~~~~~~~---~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~-~ 332 (353)
++..+.++++|++|++++|. +++.... ..+++|+.|++++|++++ .++..+..+++|++|++++|++++. +
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 22334556677777775433 2222111 335677777777777654 2334456667777777777776543 3
Q ss_pred CcccccccccceEEecCCCCC
Q 047624 333 PTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 333 ~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+..+..+++| ++|+|++|+|
T Consensus 506 ~~~~~~l~~L-~~L~ls~n~i 525 (592)
T 3ogk_B 506 AAAVTKLPSL-RYLWVQGYRA 525 (592)
T ss_dssp HHHHHHCSSC-CEEEEESCBC
T ss_pred HHHHHhcCcc-CeeECcCCcC
Confidence 3334457777 6777777764
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=4.1e-26 Score=195.04 Aligned_cols=229 Identities=22% Similarity=0.288 Sum_probs=100.1
Q ss_pred CCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCc--cCccccCCCcccEeecCCCcccccChhhhhccccccEE
Q 047624 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGE--IPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFI 100 (353)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 100 (353)
+++++|+++++.+..+.+..|.++++|++|++++|.+... .+..+..+++|++|++++|.+. .++..+..+++|+.|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 3555555555555433333445555555555555544311 1333444455555555555444 233334444555555
Q ss_pred EeCCCcCCCCCc-hhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccc-cccccccCCCCccEEecCCC
Q 047624 101 GFGANKLSGEIP-SSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTG-PIPASISNASNLMRLTIPQN 178 (353)
Q Consensus 101 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 178 (353)
++++|.+....+ ..+..+++|++|++++|.+....+..+. .+++|++|++++|.+.+ ..+..+..+++|++|++++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 555544442221 2344444444444444444322222221 34444444444444432 23333344444444444444
Q ss_pred cceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccc
Q 047624 179 GFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQL 258 (353)
Q Consensus 179 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 258 (353)
.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+ ++|++|++++|.+
T Consensus 186 ~l~~~~~-----------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l 235 (306)
T 2z66_A 186 QLEQLSP-----------------------------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCL-NSLQVLDYSLNHI 235 (306)
T ss_dssp CCCEECT-----------------------------TTTTTCTTCCEEECTTSCCSBCCSGGGTTC-TTCCEEECTTSCC
T ss_pred CcCCcCH-----------------------------HHhcCCCCCCEEECCCCccCccChhhccCc-ccCCEeECCCCCC
Confidence 4333211 112223334444444444433323233333 2555555555555
Q ss_pred cCCCchhhcCCC-CCcEEecCCceee
Q 047624 259 FGNIPSELRNLV-NLELLELGDNQFT 283 (353)
Q Consensus 259 ~~~~~~~~~~~~-~L~~L~l~~n~~~ 283 (353)
.+..+..+..++ +|++|++++|++.
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cccCHHHHHhhhccCCEEEccCCCee
Confidence 544444455442 5555555555554
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=7.9e-25 Score=202.34 Aligned_cols=257 Identities=25% Similarity=0.326 Sum_probs=214.4
Q ss_pred CCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEc
Q 047624 47 SKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDF 126 (353)
Q Consensus 47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 126 (353)
.++++|+++++.+. .+|..+. ++|++|++++|.+. .+|. .+++|+.|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 36899999999998 7787665 79999999999988 4554 5789999999999988 5555 6789999999
Q ss_pred CCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCC
Q 047624 127 PVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNG 206 (353)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 206 (353)
++|.+. .++. .+++|+.|++++|.+.. ++.. +++|++|++++|.+++... .+++|+.|.+++|.+...
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCC
Confidence 999987 5554 46889999999999874 5543 4899999999999887543 457899999999988753
Q ss_pred CcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeec
Q 047624 207 EKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRI 286 (353)
Q Consensus 207 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 286 (353)
+ ..+++|+.|++++|.+.+ ++. .+++|+.|++++|.++ .+|. .+++|++|++++|.+++.
T Consensus 177 ~----------~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~l- 236 (622)
T 3g06_A 177 P----------MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSL- 236 (622)
T ss_dssp C----------CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCC-
T ss_pred c----------ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcC-
Confidence 3 346889999999999874 332 2369999999999987 5554 358999999999999864
Q ss_pred CCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 287 PGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 287 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
+ ..+++|+.|++++|.+. .+|. .+++|+.|++++|+++ .+|..+..+++| +.|+|++|+|
T Consensus 237 p-~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L-~~L~L~~N~l 296 (622)
T 3g06_A 237 P-VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPL 296 (622)
T ss_dssp C-CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT-CEEECCSCCC
T ss_pred C-CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc-CEEEecCCCC
Confidence 3 67799999999999998 5665 6789999999999999 789999999999 8999999986
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.6e-26 Score=195.60 Aligned_cols=225 Identities=20% Similarity=0.252 Sum_probs=130.8
Q ss_pred CCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEc
Q 047624 47 SKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDF 126 (353)
Q Consensus 47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 126 (353)
.++++|+++++.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45555566555555 45555555555666666555555 45555555556666666665555 45555555566666666
Q ss_pred CCCCCCCCCCcccc--------CCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEE
Q 047624 127 PVNQLQGGLPTDLG--------FTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVI 198 (353)
Q Consensus 127 ~~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l 198 (353)
++|...+.+|..+. ..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+.++.+..+++|+.|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 55554444444332 12556666666666655 4555556666666666666666554444555555555555
Q ss_pred eeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecC
Q 047624 199 AVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELG 278 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 278 (353)
++|.+.+. .+..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+..+++|+.+++.
T Consensus 237 s~n~~~~~------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 237 RGCTALRN------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCTTCCB------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-TCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred cCCcchhh------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCC-CCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 55544331 122344556666666666666666666666663 67777777776666677777777777777666
Q ss_pred Ccee
Q 047624 279 DNQF 282 (353)
Q Consensus 279 ~n~~ 282 (353)
.+.+
T Consensus 310 ~~~~ 313 (328)
T 4fcg_A 310 PHLQ 313 (328)
T ss_dssp GGGS
T ss_pred HHHH
Confidence 5544
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=6.7e-25 Score=197.60 Aligned_cols=248 Identities=20% Similarity=0.195 Sum_probs=168.1
Q ss_pred CCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeC
Q 047624 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFG 103 (353)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 103 (353)
..+.++..+..+.. +|..+. +++++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34566666666653 343333 477777887777776666777777778888887777776666677777778888887
Q ss_pred CCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccc-ccccCCCCccEEecCCCccee
Q 047624 104 ANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIP-ASISNASNLMRLTIPQNGFSG 182 (353)
Q Consensus 104 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~ 182 (353)
+|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|+++++.....++ ..+..+++|++|++++|.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 77777555555777777888888777776 4444444467778888877743322333 346677778888888877765
Q ss_pred eCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCC
Q 047624 183 KVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNI 262 (353)
Q Consensus 183 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 262 (353)
. +.+..+++|+.|++++|.+.+.. ...+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+++..
T Consensus 211 ~-~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 211 M-PNLTPLVGLEELEMSGNHFPEIR------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLSSLP 282 (452)
T ss_dssp C-CCCTTCTTCCEEECTTSCCSEEC------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCC
T ss_pred c-ccccccccccEEECcCCcCcccC------cccccCccCCCEEEeCCCcCceECHHHhcCCC-CCCEEECCCCcCCccC
Confidence 4 34666677777777777665421 23456667777777777777766666666664 7888888888777555
Q ss_pred chhhcCCCCCcEEecCCceee
Q 047624 263 PSELRNLVNLELLELGDNQFT 283 (353)
Q Consensus 263 ~~~~~~~~~L~~L~l~~n~~~ 283 (353)
+..+..+++|++|++++|++.
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCEE
T ss_pred hHHhccccCCCEEEccCCCcC
Confidence 566677778888888887765
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=4.7e-25 Score=197.91 Aligned_cols=247 Identities=21% Similarity=0.240 Sum_probs=158.6
Q ss_pred CcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCC
Q 047624 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGA 104 (353)
Q Consensus 25 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 104 (353)
.+.++..+..+.. +|..+. +++++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 45 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4556666655552 343332 4667777777777655556677777777777777777655556677777777777777
Q ss_pred CcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcc-ccccccccccCCCCccEEecCCCcceee
Q 047624 105 NKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQ-FTGPIPASISNASNLMRLTIPQNGFSGK 183 (353)
Q Consensus 105 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 183 (353)
|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++.++. +....+..+..+++|++|++++|.++..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 7776444445666777777777777765 4444333466777777777643 3322233456677777777777776643
Q ss_pred CCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCc
Q 047624 184 VPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIP 263 (353)
Q Consensus 184 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 263 (353)
+.+..+++|+.|++++|.+.+.. ...+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+++..+
T Consensus 201 -~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 201 -PNLTPLIKLDELDLSGNHLSAIR------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLTLLPH 272 (440)
T ss_dssp -CCCTTCSSCCEEECTTSCCCEEC------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCT-TCCEEECTTSCCCCCCT
T ss_pred -cccCCCcccCEEECCCCccCccC------hhhhccCccCCEEECCCCceeEEChhhhcCCC-CCCEEECCCCCCCccCh
Confidence 34666677777777776655421 23455667777777777777666565666664 77888888777775555
Q ss_pred hhhcCCCCCcEEecCCceee
Q 047624 264 SELRNLVNLELLELGDNQFT 283 (353)
Q Consensus 264 ~~~~~~~~L~~L~l~~n~~~ 283 (353)
..+..+++|++|++++|++.
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEE
T ss_pred hHhccccCCCEEEcCCCCcc
Confidence 66677777888888877765
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=8.4e-28 Score=224.14 Aligned_cols=344 Identities=15% Similarity=0.103 Sum_probs=228.9
Q ss_pred CcEEEccCCCCc---cccCcc------------cccCCCCcEEEcccCcccccCCcccCC-CCC-ccEEEecCCc-cCC-
Q 047624 1 LRILWLDNNTYG---GQIPDN------------ISHCVNLESLFLAHNELVGKVPGKLGS-LSK-LRTLAVHHNN-LSG- 61 (353)
Q Consensus 1 L~~L~l~~~~~~---~~~~~~------------~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~-~~~- 61 (353)
|++|+++++... +..|.. ...+++|++|+++++.+.+..+..+.. ++. |++|++++|. +..
T Consensus 75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~ 154 (592)
T 3ogk_B 75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTD 154 (592)
T ss_dssp CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHH
T ss_pred CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHH
Confidence 678999886431 122221 227899999999999876544444444 444 9999999986 221
Q ss_pred ccCccccCCCcccEeecCCCccccc----ChhhhhccccccEEEeCCCcCCC----CCchhhcCCCCCCEEEcCCCCCCC
Q 047624 62 EIPSSFGNLSSLERLSAAANQFVGQ----IPETLGELKRMRFIGFGANKLSG----EIPSSIYNLSSLSNFDFPVNQLQG 133 (353)
Q Consensus 62 ~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~ 133 (353)
.++.....+++|++|++++|.+.+. ++.....+++|+.|+++++.+.. .++..+..+++|+.|+++++.+.
T Consensus 155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~- 233 (592)
T 3ogk_B 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL- 233 (592)
T ss_dssp HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-
T ss_pred HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-
Confidence 2333345789999999999988654 33445678999999999999862 34455667899999999998875
Q ss_pred CCCccccCCCCCCCEEeccCccc--------------------------cccccccccCCCCccEEecCCCcceeeCC--
Q 047624 134 GLPTDLGFTLPNLERLNVGDNQF--------------------------TGPIPASISNASNLMRLTIPQNGFSGKVP-- 185 (353)
Q Consensus 134 ~~~~~~~~~~~~L~~L~l~~~~~--------------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-- 185 (353)
.++..+. .+++|+++.+..... ...++..+..+++|++|++++|.+.+...
T Consensus 234 ~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 234 ELVGFFK-AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp GGHHHHH-HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred HHHHHHh-hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 3333332 456666666542111 11234445566778888888777544222
Q ss_pred CcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccC-----------CcCCccCchhHhhhcccCcEEEec
Q 047624 186 SLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINT-----------NNFGGMLPEAVGNLSTRIRILRVG 254 (353)
Q Consensus 186 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~L~~L~l~ 254 (353)
.+..+++|+.|.+.+ .+. ..........+++|+.|+++. +.+++.....+....++|++|++.
T Consensus 313 ~~~~~~~L~~L~L~~-~~~-----~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 313 LIQKCPNLEVLETRN-VIG-----DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386 (592)
T ss_dssp HHTTCTTCCEEEEEG-GGH-----HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE
T ss_pred HHHhCcCCCEEeccC-ccC-----HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee
Confidence 146777888888773 221 113334446678899999983 344433233333323589999998
Q ss_pred CccccCCCchhhcC-CCCCcEEecC----CceeeeecC-------CCCCCCCcEEEeeccc--ccccCChhh-hcCCCCc
Q 047624 255 NNQLFGNIPSELRN-LVNLELLELG----DNQFTGRIP-------GRNLTSLAILVFVENM--LEGSIPSSL-GKCQNLI 319 (353)
Q Consensus 255 ~~~~~~~~~~~~~~-~~~L~~L~l~----~n~~~~~~~-------~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~ 319 (353)
.+.+++..+..+.. +++|++|+++ .|.+++... ...+++|++|++++|. +++.....+ ..+++|+
T Consensus 387 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~ 466 (592)
T 3ogk_B 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466 (592)
T ss_dssp ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence 88887665666655 8999999996 445543210 1348899999998654 554444444 3489999
Q ss_pred EEecCCCcCCCC-CCcccccccccceEEecCCCCC
Q 047624 320 LLDLSNNNLSGT-IPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 320 ~l~l~~n~~~~~-~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
.|++++|++++. ++..+.++++| ++|+|++|+|
T Consensus 467 ~L~L~~n~l~~~~~~~~~~~~~~L-~~L~l~~n~l 500 (592)
T 3ogk_B 467 WMLLGYVGESDEGLMEFSRGCPNL-QKLEMRGCCF 500 (592)
T ss_dssp EEEECSCCSSHHHHHHHHTCCTTC-CEEEEESCCC
T ss_pred EeeccCCCCCHHHHHHHHhcCccc-CeeeccCCCC
Confidence 999999999863 45556788999 8999999975
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.3e-25 Score=189.99 Aligned_cols=268 Identities=21% Similarity=0.200 Sum_probs=177.6
Q ss_pred cEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCC
Q 047624 26 ESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGAN 105 (353)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 105 (353)
++++.++..+.. +|..+ .++|++|+++++.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 567777777663 34333 468888899888887555567888888888888888887666777888888888888888
Q ss_pred c-CCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeC
Q 047624 106 K-LSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKV 184 (353)
Q Consensus 106 ~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 184 (353)
. +....+..+..+++|++|++++|.+....+..+ ..+++|++|++++|.+....+..+..+++|++|++++|.++...
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 6 664456677788888888888888763333333 36777888888887776544445667777777777777666544
Q ss_pred CC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCc
Q 047624 185 PS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIP 263 (353)
Q Consensus 185 ~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 263 (353)
+. +.. +++|+.|++++|.+.+..+.++..++ +|++|++++|.+++..+
T Consensus 170 ~~~~~~------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 170 ERAFRG------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPT 218 (285)
T ss_dssp TTTTTT------------------------------CTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCH
T ss_pred HHHhcC------------------------------ccccCEEECCCCcccccCHhHccCcc-cccEeeCCCCcCCcCCH
Confidence 32 333 34455555555555545555555553 78888888888875555
Q ss_pred hhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCccccc--ccc
Q 047624 264 SELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIG--LSS 341 (353)
Q Consensus 264 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~--l~~ 341 (353)
..+..+++|++|++++|++....+ .. +....++.+..+.+.+....|+.+.+ +..
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c~~~----------------~~-------~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~ 275 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVCDCR----------------AR-------PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEECSGG----------------GH-------HHHHHHHHCCSEECCCBEEESGGGTTCBGGG
T ss_pred HHcccCcccCEEeccCCCccCCCC----------------cH-------HHHHHHHhcccccCccccCCchHhCCcChhh
Confidence 667788888888888888763211 11 01112333445555666556665543 556
Q ss_pred cceEEecCCCC
Q 047624 342 LSIYLDLSQNQ 352 (353)
Q Consensus 342 l~~~l~l~~~~ 352 (353)
+ ...++.+|+
T Consensus 276 l-~~~~l~~C~ 285 (285)
T 1ozn_A 276 L-AANDLQGCA 285 (285)
T ss_dssp S-CGGGSCCC-
T ss_pred c-CHHHhccCC
Confidence 6 566666664
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.8e-25 Score=189.78 Aligned_cols=254 Identities=16% Similarity=0.140 Sum_probs=136.6
Q ss_pred eecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcc
Q 047624 76 LSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQ 155 (353)
Q Consensus 76 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 155 (353)
.+++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+ + ..+++|++|++++|.
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~-~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L-ESLSTLRTLDLNNNY 91 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--E-TTCTTCCEEECCSSE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--h-hhcCCCCEEECcCCc
Confidence 3444444433333334455566666666666665555566666666666666666642221 2 256667777777666
Q ss_pred ccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCc
Q 047624 156 FTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGG 235 (353)
Q Consensus 156 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 235 (353)
+.. + ...++|++|++++|.+.+.... .+++|+.|+++.|.+.+.. ...+..+++|+.|++++|.+.+
T Consensus 92 l~~-l----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 92 VQE-L----LVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLR------DLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp EEE-E----EECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGG------GBCTGGGSSEEEEECTTSCCCE
T ss_pred ccc-c----cCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCcc------chhhhccCCCCEEECCCCCCCc
Confidence 652 1 1236777777777766654322 2455666666555554311 1233445566666666666554
Q ss_pred cCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC-CCCCCCcEEEeecccccccCChhhhc
Q 047624 236 MLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG-RNLTSLAILVFVENMLEGSIPSSLGK 314 (353)
Q Consensus 236 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~ 314 (353)
..+..+....++|++|++++|.+++. + ....+++|++|++++|.+.+..+. ..+++|+.|++++|++. .+|..+..
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 44444432223666666666665522 2 122356666666666665544322 34456666666666655 34555555
Q ss_pred CCCCcEEecCCCcCC-CCCCcccccccccceEEecC
Q 047624 315 CQNLILLDLSNNNLS-GTIPTEVIGLSSLSIYLDLS 349 (353)
Q Consensus 315 ~~~L~~l~l~~n~~~-~~~~~~~~~l~~l~~~l~l~ 349 (353)
+++|+.|++++|+++ +.+|..+..++.+ ++++++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L-~~l~l~ 270 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRV-QTVAKQ 270 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHH-HHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccc-eEEECC
Confidence 566666666666665 4455555555555 455544
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.7e-24 Score=193.60 Aligned_cols=200 Identities=24% Similarity=0.261 Sum_probs=89.6
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
++|+|++|.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 44445555444444444444455555555544444444444444445555555544444333333444445555555544
Q ss_pred cccccChhhhhccccccEEEeCCCcCCCCCc-hhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccc
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIP-SSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPI 160 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 160 (353)
.+....+..+..+++|+.|+++++.....++ ..+..+++|++|++++|.+. .++. +. .+++|+.|++++|.+....
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~-~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LT-PLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC-CT-TCTTCCEEECTTSCCSEEC
T ss_pred CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc-cc-ccccccEEECcCCcCcccC
Confidence 4443333344444445555544422221222 23444444555555544443 2221 11 3444555555544444433
Q ss_pred cccccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCC
Q 047624 161 PASISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLG 204 (353)
Q Consensus 161 ~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~ 204 (353)
+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+.
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 44444444455555554444443322 444444444444444443
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=3.5e-24 Score=192.27 Aligned_cols=244 Identities=18% Similarity=0.196 Sum_probs=132.6
Q ss_pred EEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcc
Q 047624 4 LWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83 (353)
Q Consensus 4 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 83 (353)
++.++..++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 48 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 48 VICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 344444444 3333332 4566666666666555555566666666666666665544445566666666666666665
Q ss_pred cccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccccc
Q 047624 84 VGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPAS 163 (353)
Q Consensus 84 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 163 (353)
....+..+..+++|+.|++++|.+....+..+..+++|++|+++++.....++...+..+++|+.|++++|.+. .++ .
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~ 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-N 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-C
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-c
Confidence 54444445566666666666666654444455556666666666543333444433335566666666666555 233 3
Q ss_pred ccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHh
Q 047624 164 ISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVG 242 (353)
Q Consensus 164 l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 242 (353)
+..+++|++|++++|.+++..+. +..+++|+.|++++|.+.... ...+..+++|+.|++++|.+++..+..+.
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE------RNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC------TTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC------hhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 45556666666666666555332 555666666666665554321 12344555666666666666544444444
Q ss_pred hhcccCcEEEecCcccc
Q 047624 243 NLSTRIRILRVGNNQLF 259 (353)
Q Consensus 243 ~~~~~L~~L~l~~~~~~ 259 (353)
.+ ++|+.|++++|.+.
T Consensus 277 ~l-~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 277 PL-HHLERIHLHHNPWN 292 (440)
T ss_dssp SC-TTCCEEECCSSCEE
T ss_pred cc-cCCCEEEcCCCCcc
Confidence 44 36666666666543
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-26 Score=199.25 Aligned_cols=235 Identities=19% Similarity=0.147 Sum_probs=131.8
Q ss_pred EEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcc
Q 047624 4 LWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83 (353)
Q Consensus 4 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 83 (353)
.+++.+.+.......+..+++|++|++++|.+....+..+.++++|++|++++|.+.+.. + +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D-LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E-ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h-hhhcCCCCEEECcCCcc
Confidence 344444444334444555667777777777776666666777777777777777765332 2 67777777777777766
Q ss_pred cccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccccc
Q 047624 84 VGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPAS 163 (353)
Q Consensus 84 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 163 (353)
.+ +...++|+.|++++|.+.+..+. .+++|+.|++++|.+.. ++......+++|+.|++++|.+....+..
T Consensus 93 ~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 93 QE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred cc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 53 12336677777777766633222 24566666666666652 22222224566666666666665444444
Q ss_pred c-cCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHh
Q 047624 164 I-SNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVG 242 (353)
Q Consensus 164 l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 242 (353)
+ ..+++|++|++++|.++... ....+++|+.|+++ +|.+.+ ++..+.
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls------------------------------~N~l~~-l~~~~~ 211 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLS------------------------------SNKLAF-MGPEFQ 211 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECC------------------------------SSCCCE-ECGGGG
T ss_pred HhhccCcCCEEECCCCcCcccc-cccccccCCEEECC------------------------------CCcCCc-chhhhc
Confidence 4 24566666666666655442 22224445555554 444442 222233
Q ss_pred hhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceee
Q 047624 243 NLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFT 283 (353)
Q Consensus 243 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 283 (353)
.. ++|++|++++|.+. .+|..+..+++|++|++++|++.
T Consensus 212 ~l-~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 212 SA-AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GG-TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred cc-CcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 33 25555555555554 34445555555555555555554
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.2e-26 Score=216.46 Aligned_cols=349 Identities=11% Similarity=0.070 Sum_probs=189.8
Q ss_pred CcEEEccCCCCccccCcccc-cCCCCcEEEcccC-ccccc-CCcccCCCCCccEEEecCCccCCccC----ccccCCCcc
Q 047624 1 LRILWLDNNTYGGQIPDNIS-HCVNLESLFLAHN-ELVGK-VPGKLGSLSKLRTLAVHHNNLSGEIP----SSFGNLSSL 73 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L 73 (353)
|++|++++|.+++..+..+. .+++|++|++.+| .+... .+..+.++++|++|++++|.+.+..+ .....+++|
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 34555555555544333333 4555666666555 22211 22222345566666666555433222 222244556
Q ss_pred cEeecCCCc--ccc-cChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCC--------------------
Q 047624 74 ERLSAAANQ--FVG-QIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQ-------------------- 130 (353)
Q Consensus 74 ~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------------- 130 (353)
++|++++|. +.. .+......+++|+.|++++|.....++..+..+++|+.|++..+.
T Consensus 187 ~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~ 266 (594)
T 2p1m_B 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266 (594)
T ss_dssp CEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTT
T ss_pred cEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCC
Confidence 666665554 110 111112334566666665552211234444445555555543321
Q ss_pred ------CCC----CCCccccCCCCCCCEEeccCccccccc-cccccCCCCccEEecCCCccee-eCCC-cccccCccEEE
Q 047624 131 ------LQG----GLPTDLGFTLPNLERLNVGDNQFTGPI-PASISNASNLMRLTIPQNGFSG-KVPS-LENLHKLQWVV 197 (353)
Q Consensus 131 ------~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~-~~~~-~~~~~~L~~l~ 197 (353)
+.. .++... ..+++|+.|++++|.+.... ...+..+++|++|++++| +.+ .... ...+++|+.|+
T Consensus 267 L~~Ls~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 267 LRCLSGFWDAVPAYLPAVY-SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp CCEEECCBTCCGGGGGGGH-HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred cccccCCcccchhhHHHHH-HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence 000 011110 13466777777777654321 122346677777777766 221 1111 23467788887
Q ss_pred EeeccC----CCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEec--C----ccccCC-----C
Q 047624 198 IAVNHL----GNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVG--N----NQLFGN-----I 262 (353)
Q Consensus 198 l~~~~~----~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~~~~~~-----~ 262 (353)
+..+.- ................+++|+.|.+.++.+++.....+....++|++|+++ + +.+++. +
T Consensus 345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 424 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424 (594)
T ss_dssp EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence 744210 001111112222334578888888877777765555555433589999998 3 344411 1
Q ss_pred chhhcCCCCCcEEecCCceeeeecCC---CCCCCCcEEEeecccccccCChhh-hcCCCCcEEecCCCcCCCCCCc-ccc
Q 047624 263 PSELRNLVNLELLELGDNQFTGRIPG---RNLTSLAILVFVENMLEGSIPSSL-GKCQNLILLDLSNNNLSGTIPT-EVI 337 (353)
Q Consensus 263 ~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~~-~~~ 337 (353)
+..+.++++|++|++++ .+.+.... ..+++|+.|++++|.+++.....+ ..+++|+.|++++|++++..+. .+.
T Consensus 425 ~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 503 (594)
T 2p1m_B 425 GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503 (594)
T ss_dssp HHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred HHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence 22366788999999987 44432221 237899999999999876555555 7789999999999999754443 445
Q ss_pred cccccceEEecCCCCC
Q 047624 338 GLSSLSIYLDLSQNQL 353 (353)
Q Consensus 338 ~l~~l~~~l~l~~~~~ 353 (353)
.+++| ++|++++|++
T Consensus 504 ~l~~L-~~L~l~~~~~ 518 (594)
T 2p1m_B 504 KLETM-RSLWMSSCSV 518 (594)
T ss_dssp GGGGS-SEEEEESSCC
T ss_pred hCCCC-CEEeeeCCCC
Confidence 68999 8999999975
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.1e-25 Score=191.00 Aligned_cols=248 Identities=20% Similarity=0.215 Sum_probs=120.3
Q ss_pred cCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCC-CCCchhhc-------CCCCCCEEEcCCCCCCCCCCccc
Q 047624 68 GNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLS-GEIPSSIY-------NLSSLSNFDFPVNQLQGGLPTDL 139 (353)
Q Consensus 68 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~ 139 (353)
+..++|+++++++|.+ ..|..+... |+.|+++++.+. ..++..+. .+++|++|++++|.+.+..+..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3344555555555554 334333322 445555555442 12333222 45566666666665554444443
Q ss_pred c-CCCCCCCEEeccCccccccccccccCC-----CCccEEecCCCcceeeCC-CcccccCccEEEEeeccCCCCCcchhH
Q 047624 140 G-FTLPNLERLNVGDNQFTGPIPASISNA-----SNLMRLTIPQNGFSGKVP-SLENLHKLQWVVIAVNHLGNGEKDDLE 212 (353)
Q Consensus 140 ~-~~~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~ 212 (353)
+ ..+++|+.|++++|.+... +..+..+ ++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+. ..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~ 190 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE----RG 190 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH----HH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc----hH
Confidence 1 3456666666666665533 4444443 666666666666655542 355566666666665553210 01
Q ss_pred HHhhh--cccCCccEEEccCCcCCc--cCchhHh-hhcccCcEEEecCccccCCCc-hhhcCCCCCcEEecCCceeeeec
Q 047624 213 FVNSL--VNAYGLELLEINTNNFGG--MLPEAVG-NLSTRIRILRVGNNQLFGNIP-SELRNLVNLELLELGDNQFTGRI 286 (353)
Q Consensus 213 ~~~~l--~~~~~L~~L~l~~~~~~~--~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~ 286 (353)
....+ ..+++|++|++++|.+.+ ..+..+. .+ ++|++|++++|.+.+..| ..+..+++|++|++++|.++
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--- 266 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--- 266 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS---
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC---
Confidence 22222 455556666666665542 1111111 22 355555555555553332 23334455555555555544
Q ss_pred CCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 287 PGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 287 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
.+|..+. ++|+.|++++|++++. |. +..+++| ++|++++|+|
T Consensus 267 --------------------~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L-~~L~L~~N~l 308 (312)
T 1wwl_A 267 --------------------QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV-GNLSLKGNPF 308 (312)
T ss_dssp --------------------SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE-EEEECTTCTT
T ss_pred --------------------hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC-CEEeccCCCC
Confidence 3343333 4555555555555533 43 5555555 5555555543
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=7e-24 Score=192.07 Aligned_cols=215 Identities=19% Similarity=0.142 Sum_probs=122.6
Q ss_pred cccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEE
Q 047624 94 LKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRL 173 (353)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 173 (353)
+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+ ...+++|+.|++++|.+.. ++ ..++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-LL----VGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEE-EE----ECTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCC-CC----CCCCcCEE
Confidence 3467777777777775556667777777777777777653222 2256677777777776652 22 23667777
Q ss_pred ecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEe
Q 047624 174 TIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRV 253 (353)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 253 (353)
++++|.+.+..+. .+++|+.|++ ++|.+.+..+..+..++ +|++|++
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L------------------------------~~N~l~~~~~~~~~~l~-~L~~L~L 151 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYL------------------------------ANNKITMLRDLDEGCRS-RVQYLDL 151 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEEC------------------------------CSSCCCSGGGBCGGGGS-SEEEEEC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEEC------------------------------CCCCCCCCCchhhcCCC-CCCEEEC
Confidence 7777666554322 2344455554 44444444343444442 5555555
Q ss_pred cCccccCCCchhhc-CCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCC
Q 047624 254 GNNQLFGNIPSELR-NLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTI 332 (353)
Q Consensus 254 ~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 332 (353)
++|.+++..|..+. .+++|++|++++|.+.+..+...+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+
T Consensus 152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~l 229 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LI 229 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EE
T ss_pred CCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-cc
Confidence 55555544444443 455566666666655555444455566666666665553 3334555566666666666665 34
Q ss_pred CcccccccccceEEecCCCC
Q 047624 333 PTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 333 ~~~~~~l~~l~~~l~l~~~~ 352 (353)
|..+..++++ ++|++++|+
T Consensus 230 p~~l~~l~~L-~~L~l~~N~ 248 (487)
T 3oja_A 230 EKALRFSQNL-EHFDLRGNG 248 (487)
T ss_dssp CTTCCCCTTC-CEEECTTCC
T ss_pred chhhccCCCC-CEEEcCCCC
Confidence 5555555666 566666654
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.8e-22 Score=165.25 Aligned_cols=199 Identities=22% Similarity=0.279 Sum_probs=117.1
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
++++++++.++. +|..+. +++++|+++++.+....+..|.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus 19 ~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 19 NSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 456666666663 443332 45666666666666555556666666666666666665333344566666666666666
Q ss_pred cccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccc
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIP 161 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 161 (353)
.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+....+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeCh
Confidence 666444445566666666666666666444455566666666666666665 3444333356666666666666654433
Q ss_pred ccccCCCCccEEecCCCcceeeCCC-cccccCccEEEEeeccCC
Q 047624 162 ASISNASNLMRLTIPQNGFSGKVPS-LENLHKLQWVVIAVNHLG 204 (353)
Q Consensus 162 ~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~ 204 (353)
..+..+++|++|++++|.++...+. +..+++|+.+++++|.+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 4455566666666666666554443 455555566655555543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=4.7e-24 Score=193.18 Aligned_cols=237 Identities=16% Similarity=0.129 Sum_probs=193.0
Q ss_pred cCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEE
Q 047624 21 HCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFI 100 (353)
Q Consensus 21 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 100 (353)
.+++|++|++++|.+....+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. + ..++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEE
Confidence 44589999999999988778889999999999999999874443 88999999999999988742 2 34889999
Q ss_pred EeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccccccc-CCCCccEEecCCCc
Q 047624 101 GFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASIS-NASNLMRLTIPQNG 179 (353)
Q Consensus 101 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~ 179 (353)
++++|.+.+..+. .+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+....+..+. .+++|++|++++|.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999999854433 457899999999998854454554 688999999999999876777775 78999999999999
Q ss_pred ceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCcccc
Q 047624 180 FSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLF 259 (353)
Q Consensus 180 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 259 (353)
+++... ...+++|+.|++++|.+.+.+ ..+..+++|+.|++++|.+.+ +|..+..+ ++|+.|++++|.+.
T Consensus 181 l~~~~~-~~~l~~L~~L~Ls~N~l~~~~-------~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l-~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 181 IYDVKG-QVVFAKLKTLDLSSNKLAFMG-------PEFQSAAGVTWISLRNNKLVL-IEKALRFS-QNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEEEC-CCCCTTCCEEECCSSCCCEEC-------GGGGGGTTCSEEECTTSCCCE-ECTTCCCC-TTCCEEECTTCCBC
T ss_pred cccccc-cccCCCCCEEECCCCCCCCCC-------HhHcCCCCccEEEecCCcCcc-cchhhccC-CCCCEEEcCCCCCc
Confidence 987743 446899999999999887532 346678899999999999884 56666666 49999999999887
Q ss_pred -CCCchhhcCCCCCcEEecC
Q 047624 260 -GNIPSELRNLVNLELLELG 278 (353)
Q Consensus 260 -~~~~~~~~~~~~L~~L~l~ 278 (353)
+..|.++..++.|+.++++
T Consensus 251 c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 251 CGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred CcchHHHHHhCCCCcEEecc
Confidence 5667788888888888886
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.6e-22 Score=170.04 Aligned_cols=224 Identities=18% Similarity=0.177 Sum_probs=179.9
Q ss_pred EEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcc
Q 047624 4 LWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQF 83 (353)
Q Consensus 4 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 83 (353)
.+-.+..+. .+|..+. +++++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344444554 3554432 5799999999999877777889999999999999998866666899999999999999999
Q ss_pred cccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCC-CCccccCCCCCCCEEeccCccccccccc
Q 047624 84 VGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGG-LPTDLGFTLPNLERLNVGDNQFTGPIPA 162 (353)
Q Consensus 84 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 162 (353)
....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+... ++..+. .+++|++|++++|.+....+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCCHH
Confidence 877778899999999999999999866555788899999999999998742 455555 789999999999998865555
Q ss_pred cccCCCCcc----EEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccC
Q 047624 163 SISNASNLM----RLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGML 237 (353)
Q Consensus 163 ~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 237 (353)
.+..+++++ +|++++|.+....+......+|+.|++++|.+.+.+. ..+..+++|+.+++++|.+....
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT------TTTTTCCSCCEEECCSSCBCCCT
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCH------hHhcccccccEEEccCCcccccC
Confidence 666666666 8999999999887776566689999999998875432 24567889999999999988654
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=1.2e-24 Score=202.95 Aligned_cols=180 Identities=15% Similarity=0.063 Sum_probs=115.2
Q ss_pred CCCCccEEecCCCcceeeCC--CcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccC---------CcCC
Q 047624 166 NASNLMRLTIPQNGFSGKVP--SLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINT---------NNFG 234 (353)
Q Consensus 166 ~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~---------~~~~ 234 (353)
.+++|++|++++|.+.+... .+..+++|+.|.+..+ .. ..........+++|+.|++.+ +.++
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~-----~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE-----DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH-----HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC-----HHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 45777778887777543211 1456777888888765 21 112233334577888888833 2333
Q ss_pred ccCchhHhhhcccCcEEEecCccccCCCchhhc-CCCCCcEEecC--C----ceeeeecC-------CCCCCCCcEEEee
Q 047624 235 GMLPEAVGNLSTRIRILRVGNNQLFGNIPSELR-NLVNLELLELG--D----NQFTGRIP-------GRNLTSLAILVFV 300 (353)
Q Consensus 235 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----n~~~~~~~-------~~~~~~L~~L~l~ 300 (353)
+.....+....++|++|.+.++.+++..+..+. .+++|++|+++ + +.+++... ...+++|+.|+++
T Consensus 361 ~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence 332233333225888888777777654444444 58899999998 3 23331110 1456789999997
Q ss_pred cccccccCChhhhc-CCCCcEEecCCCcCCCCCCccc-ccccccceEEecCCCCC
Q 047624 301 ENMLEGSIPSSLGK-CQNLILLDLSNNNLSGTIPTEV-IGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 301 ~~~~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~-~~l~~l~~~l~l~~~~~ 353 (353)
+ .+++.....+.. +++|+.|++++|++++..+..+ ..+++| ++|+|++|++
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L-~~L~L~~n~~ 493 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL-RKLEIRDCPF 493 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC-CEEEEESCSC
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc-CEEECcCCCC
Confidence 7 565555555554 8899999999999886555555 668999 8999999975
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=6.2e-22 Score=166.49 Aligned_cols=220 Identities=19% Similarity=0.176 Sum_probs=167.4
Q ss_pred EcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCC
Q 047624 29 FLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLS 108 (353)
Q Consensus 29 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 108 (353)
+..+..+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 34444443 2344443 47999999999988555568889999999999999888766677889999999999999998
Q ss_pred CCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccc-ccccccCCCCccEEecCCCcceeeCCC-
Q 047624 109 GEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGP-IPASISNASNLMRLTIPQNGFSGKVPS- 186 (353)
Q Consensus 109 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~- 186 (353)
...+..+..+++|++|++++|.+. .++......+++|++|++++|.+... ++..+..+++|++|++++|.+++..+.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred ccChhhhcCCccccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 666677888999999999999887 34443334788999999999988753 577888899999999999998876543
Q ss_pred cccccCcc----EEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccC
Q 047624 187 LENLHKLQ----WVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFG 260 (353)
Q Consensus 187 ~~~~~~L~----~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 260 (353)
+..+++++ .++++.|.+.+... ......+|+.|++++|.+.+..+..+..+ ++|++|++++|.+..
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~-------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQP-------GAFKEIRLKELALDTNQLKSVPDGIFDRL-TSLQKIWLHTNPWDC 238 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECT-------TSSCSCCEEEEECCSSCCSCCCTTTTTTC-CSCCEEECCSSCBCC
T ss_pred hhhhhhccccceeeecCCCcccccCc-------cccCCCcccEEECCCCceeecCHhHhccc-ccccEEEccCCcccc
Confidence 55566666 78888887764322 22233479999999999885555455566 489999999998873
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=7.7e-23 Score=175.02 Aligned_cols=223 Identities=20% Similarity=0.233 Sum_probs=173.6
Q ss_pred cEEEccCCCCc-cccCcccc-------cCCCCcEEEcccCcccccCCccc--CCCCCccEEEecCCccCCccCccccCC-
Q 047624 2 RILWLDNNTYG-GQIPDNIS-------HCVNLESLFLAHNELVGKVPGKL--GSLSKLRTLAVHHNNLSGEIPSSFGNL- 70 (353)
Q Consensus 2 ~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l- 70 (353)
++|++++|.+. ..++..+. .+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+. |..+..+
T Consensus 66 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~ 144 (312)
T 1wwl_A 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQ 144 (312)
T ss_dssp HHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHH
T ss_pred hhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHH
Confidence 56788888884 34555444 68999999999999887777765 8899999999999998855 7777776
Q ss_pred ----CcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCC--Cchhh--cCCCCCCEEEcCCCCCCC--CCCcccc
Q 047624 71 ----SSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGE--IPSSI--YNLSSLSNFDFPVNQLQG--GLPTDLG 140 (353)
Q Consensus 71 ----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~--~~~~~~~ 140 (353)
++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+ ..+++|++|++++|.+.. .++..+.
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 8999999999999877778889999999999999987643 23334 778899999999998862 1222333
Q ss_pred CCCCCCCEEeccCcccccccc-ccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcc
Q 047624 141 FTLPNLERLNVGDNQFTGPIP-ASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVN 219 (353)
Q Consensus 141 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 219 (353)
..+++|+.|++++|.+....+ ..+..+++|++|++++|.++.++..+. ++|+.|+++.|.+.+.+ .+..
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p--------~~~~ 294 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP--------SPDE 294 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCC--------CTTT
T ss_pred hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCCh--------hHhh
Confidence 357899999999999876553 345567899999999999886655554 88999999999887642 2567
Q ss_pred cCCccEEEccCCcCCc
Q 047624 220 AYGLELLEINTNNFGG 235 (353)
Q Consensus 220 ~~~L~~L~l~~~~~~~ 235 (353)
+++|++|++++|.+++
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 7889999999998764
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=2e-21 Score=162.75 Aligned_cols=182 Identities=23% Similarity=0.300 Sum_probs=159.2
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
+++|++++|.+.+..+..|..+++|++|++++|.+..+.+..|.++++|++|++++|.+....+..+..+++|++|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 57899999999987777899999999999999999877777788999999999999999866667789999999999999
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccc
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPI 160 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 160 (353)
|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+....
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCC
Confidence 9998777777899999999999999998655566889999999999999998 555544447899999999999998655
Q ss_pred cccccCCCCccEEecCCCcceee
Q 047624 161 PASISNASNLMRLTIPQNGFSGK 183 (353)
Q Consensus 161 ~~~l~~~~~L~~L~l~~~~~~~~ 183 (353)
+..+..+++|+.|++++|++...
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCS
T ss_pred HHHhccccCCCEEEecCCCeeCC
Confidence 55678899999999999987653
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.5e-21 Score=163.60 Aligned_cols=200 Identities=22% Similarity=0.205 Sum_probs=112.0
Q ss_pred cCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccE
Q 047624 116 YNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQW 195 (353)
Q Consensus 116 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 195 (353)
..+++++.++++++.+. .+|..+ .+.++.|++++|.+....+..+..+++|++|++++|.++..... ..+++|+.
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 44555666666666655 444433 24566666666666554455566667777777777666654332 44555555
Q ss_pred EEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEE
Q 047624 196 VVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELL 275 (353)
Q Consensus 196 l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 275 (353)
|+++.|.+... ...+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+++|++|
T Consensus 82 L~Ls~N~l~~l-------~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 82 LDLSHNQLQSL-------PLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp EECCSSCCSSC-------CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred EECCCCcCCcC-------chhhccCCCCCEEECCCCcCcccCHHHHcCCC-CCCEEECCCCCCCccChhhcccccCCCEE
Confidence 55555554321 11233445555555555555544444444553 66666666666664444455566666666
Q ss_pred ecCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCC
Q 047624 276 ELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLS 329 (353)
Q Consensus 276 ~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 329 (353)
++++|++++..+. ..+++|+.|++++|++. .+|..+...+.|+.+++++|++.
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 6666666544332 34556666666666665 45555555556666666666655
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.1e-23 Score=178.86 Aligned_cols=251 Identities=12% Similarity=0.121 Sum_probs=136.5
Q ss_pred cEEEccCCCCccccCcccccC--CCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCc-cCccccCCCcccEeec
Q 047624 2 RILWLDNNTYGGQIPDNISHC--VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGE-IPSSFGNLSSLERLSA 78 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l 78 (353)
++++++++.+. +..+..+ ++++.|++.++.+.+..+. +.++++|++|++++|.+.+. ++..+..+++|++|++
T Consensus 50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 45666666655 2334444 6677777777666544333 44566777777777666533 5556666777777777
Q ss_pred CCCcccccChhhhhccccccEEEeCCC-cCCC-CCchhhcCCCCCCEEEcCCC-CCCCC-CCccccCCCC-CCCEEeccC
Q 047624 79 AANQFVGQIPETLGELKRMRFIGFGAN-KLSG-EIPSSIYNLSSLSNFDFPVN-QLQGG-LPTDLGFTLP-NLERLNVGD 153 (353)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~-~L~~L~l~~ 153 (353)
++|.+....+..+..+++|+.|++++| .++. .++..+..+++|++|++++| .+... ++..+. .++ +|++|++++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~ 204 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSG 204 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCS
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCC
Confidence 777666555666666677777777776 4443 14444566667777777766 55421 222222 455 677777766
Q ss_pred cc--cc-ccccccccCCCCccEEecCCCc-cee-eCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEc
Q 047624 154 NQ--FT-GPIPASISNASNLMRLTIPQNG-FSG-KVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEI 228 (353)
Q Consensus 154 ~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 228 (353)
|. +. ..++..+..+++|++|++++|. +++ ....+..+++|+.|+++.|.. ... .....+..+++|+.|++
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~--~~~---~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD--IIP---ETLLELGEIPTLKTLQV 279 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT--CCG---GGGGGGGGCTTCCEEEC
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC--CCH---HHHHHHhcCCCCCEEec
Confidence 63 32 2334444556666777766666 332 223355556666666665531 000 11123445556666666
Q ss_pred cCCcCCccCchhHhhhcccCcEEEecCccccCCCchhh
Q 047624 229 NTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSEL 266 (353)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 266 (353)
++| +.+.. +..+..+++.|++++|.+++..|..+
T Consensus 280 ~~~-i~~~~---~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 280 FGI-VPDGT---LQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp TTS-SCTTC---HHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred cCc-cCHHH---HHHHHhhCcceEEecccCccccCCcc
Confidence 555 32221 12221234445555555554444433
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=5.4e-21 Score=161.49 Aligned_cols=195 Identities=21% Similarity=0.271 Sum_probs=84.7
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
++++++++.++. +|..+. ++++.|++++|.+....+..|.++++|++|++++|.+. .++.. ..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 13 LEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHN 87 (290)
T ss_dssp CEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEEECCSS
T ss_pred cEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEEECCCC
Confidence 344444444442 222221 34445555555444444444444455555555544444 22221 34444555555544
Q ss_pred cccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccc
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIP 161 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 161 (353)
.+. .+|..+..+++|+.|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+....+
T Consensus 88 ~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp CCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred cCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCccCH
Confidence 444 33334444444455555544444333334444444555555444444 2333222234444444444444442222
Q ss_pred ccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccC
Q 047624 162 ASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHL 203 (353)
Q Consensus 162 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 203 (353)
..+..+++|++|++++|.++.++..+...++++.+.+.+|.+
T Consensus 166 ~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 223344444444444444444333333334444444444433
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2e-22 Score=176.04 Aligned_cols=256 Identities=15% Similarity=0.145 Sum_probs=119.8
Q ss_pred EcccCcccccCCcccCCCCCccEEEecCCccCCccC----ccccCCC-cccEeecCCCcccccChhhhhcc-----cccc
Q 047624 29 FLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIP----SSFGNLS-SLERLSAAANQFVGQIPETLGEL-----KRMR 98 (353)
Q Consensus 29 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~ 98 (353)
.++.+.+.+.+|..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 455555554444444444456666666666553333 4555555 56666666666654444444443 5566
Q ss_pred EEEeCCCcCCCCCchh----hcCC-CCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccC-CCCccE
Q 047624 99 FIGFGANKLSGEIPSS----IYNL-SSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISN-ASNLMR 172 (353)
Q Consensus 99 ~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~ 172 (353)
.|++++|.++...+.. +..+ ++|++|++++|.+....+..+. ..+.. .++|++
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~---------------------~~l~~~~~~L~~ 142 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK---------------------QAFSNLPASITS 142 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH---------------------HHHTTSCTTCCE
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH---------------------HHHHhCCCceeE
Confidence 6666655555333332 2222 4555555555554321111110 00111 124444
Q ss_pred EecCCCcceeeCC-----Cccccc-CccEEEEeeccCCCCCcchhHHHhhhccc-CCccEEEccCCcCCccC----chhH
Q 047624 173 LTIPQNGFSGKVP-----SLENLH-KLQWVVIAVNHLGNGEKDDLEFVNSLVNA-YGLELLEINTNNFGGML----PEAV 241 (353)
Q Consensus 173 L~l~~~~~~~~~~-----~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~----~~~~ 241 (353)
|++++|.+.+... .+...+ +|+.|+++.|.+++.... .+...+..+ ++|+.|++++|.+.+.. +..+
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA--ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHH--HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 4444444332110 011122 344444444433222111 223344444 36777777777666532 2333
Q ss_pred hhhcccCcEEEecCccccCCCc----hhhcCCCCCcEEecCCceeeeec---------CCCCCCCCcEEEeeccccccc
Q 047624 242 GNLSTRIRILRVGNNQLFGNIP----SELRNLVNLELLELGDNQFTGRI---------PGRNLTSLAILVFVENMLEGS 307 (353)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~---------~~~~~~~L~~L~l~~~~~~~~ 307 (353)
...+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.. ....+++|+.|++++|++...
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3333467777777776654332 23345566666666666532111 113444555555555555443
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3.6e-23 Score=180.80 Aligned_cols=256 Identities=15% Similarity=0.178 Sum_probs=176.5
Q ss_pred EEEccCCCCccccCcccccCCCCcEEEcccCcccccCC----cccCCCC-CccEEEecCCccCCccCccccCC-----Cc
Q 047624 3 ILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVP----GKLGSLS-KLRTLAVHHNNLSGEIPSSFGNL-----SS 72 (353)
Q Consensus 3 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 72 (353)
.++++++.+++..|..+...++|++|++++|.+.+..+ ..+.+++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46889999998888877777779999999999886655 6778888 99999999999986666666664 89
Q ss_pred ccEeecCCCcccccChhhhh----cc-ccccEEEeCCCcCCCCCchhh----cC-CCCCCEEEcCCCCCCCCCCcc----
Q 047624 73 LERLSAAANQFVGQIPETLG----EL-KRMRFIGFGANKLSGEIPSSI----YN-LSSLSNFDFPVNQLQGGLPTD---- 138 (353)
Q Consensus 73 L~~L~l~~~~~~~~~~~~~~----~l-~~L~~L~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~~~---- 138 (353)
|++|++++|.+....+..+. .+ ++|+.|++++|.+....+..+ .. .++|++|++++|.+.......
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999999866666544 44 899999999999986555443 33 358999999998876322222
Q ss_pred ccCCC-CCCCEEeccCcccccccccc----ccCC-CCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhH
Q 047624 139 LGFTL-PNLERLNVGDNQFTGPIPAS----ISNA-SNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLE 212 (353)
Q Consensus 139 ~~~~~-~~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 212 (353)
+. .. ++|++|++++|.+....+.. +..+ ++|++|++++|.+.+. .. ..
T Consensus 162 l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-----------------------~~--~~ 215 (362)
T 3goz_A 162 LA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK-----------------------SY--AE 215 (362)
T ss_dssp HH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS-----------------------CH--HH
T ss_pred Hh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh-----------------------HH--HH
Confidence 12 23 37777777777776443322 2333 3677777777665431 11 02
Q ss_pred HHhhhcc-cCCccEEEccCCcCCccCchhH----hhhcccCcEEEecCccccCC-------CchhhcCCCCCcEEecCCc
Q 047624 213 FVNSLVN-AYGLELLEINTNNFGGMLPEAV----GNLSTRIRILRVGNNQLFGN-------IPSELRNLVNLELLELGDN 280 (353)
Q Consensus 213 ~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~n 280 (353)
+...+.. .++|+.|++++|.+.+..+..+ ... ++|++|++++|.+.+. ++..+..+++|++|++++|
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l-~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL-KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT-TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC-CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 3333444 3467777777777665443222 223 4788888888874322 2335667888999999999
Q ss_pred eeeee
Q 047624 281 QFTGR 285 (353)
Q Consensus 281 ~~~~~ 285 (353)
++.+.
T Consensus 295 ~l~~~ 299 (362)
T 3goz_A 295 EIHPS 299 (362)
T ss_dssp BCCGG
T ss_pred cCCCc
Confidence 88754
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.1e-21 Score=164.36 Aligned_cols=179 Identities=21% Similarity=0.281 Sum_probs=100.2
Q ss_pred cccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhcccccc
Q 047624 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMR 98 (353)
Q Consensus 19 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 98 (353)
...+++|+.|++.++.+... ..+..+++|++|++++|.+.+ + +.+..+++|++|++++|.+....+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34556666666666665422 235566666666666666552 2 3556666666666666666544444456666666
Q ss_pred EEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCC
Q 047624 99 FIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQN 178 (353)
Q Consensus 99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 178 (353)
.|++++|.+.+..+..+..+++|++|++++|.+. .++......+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 6666666666444444556666666666666655 333333234566666666666655433334455566666666666
Q ss_pred cceeeCCC-cccccCccEEEEeecc
Q 047624 179 GFSGKVPS-LENLHKLQWVVIAVNH 202 (353)
Q Consensus 179 ~~~~~~~~-~~~~~~L~~l~l~~~~ 202 (353)
.+.+..+. +..+++|+.+++++|.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCC
Confidence 55554433 3444555555554443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.1e-21 Score=161.23 Aligned_cols=196 Identities=17% Similarity=0.178 Sum_probs=141.7
Q ss_pred CCCcEEEcccCcccccCCcccCCCCCccEEEecCCc-cCCccCccccCCCcccEeecCC-CcccccChhhhhccccccEE
Q 047624 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNN-LSGEIPSSFGNLSSLERLSAAA-NQFVGQIPETLGELKRMRFI 100 (353)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 100 (353)
+++++|+++++.+..+.+..|.++++|++|++++|. +....+..|..+++|++|++++ |.+....+..+..+++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478888888888876666678888888888888886 6644445778888888888887 77776555677788888888
Q ss_pred EeCCCcCCCCCchhhcCCCCCC---EEEcCCC-CCCCCCCccccCCCCCCC-EEeccCccccccccccccCCCCccEEec
Q 047624 101 GFGANKLSGEIPSSIYNLSSLS---NFDFPVN-QLQGGLPTDLGFTLPNLE-RLNVGDNQFTGPIPASISNASNLMRLTI 175 (353)
Q Consensus 101 ~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l 175 (353)
++++|.+. .+|. +..+++|+ +|++++| .+. .++...+..+++|+ ++++++|.+. .++......++|++|++
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEEC
T ss_pred eCCCCCCc-cccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEc
Confidence 88888877 3554 66677777 8888888 665 45544444677888 8888888876 45544444478888888
Q ss_pred CCCc-ceeeCCC-cccc-cCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCC
Q 047624 176 PQNG-FSGKVPS-LENL-HKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTN 231 (353)
Q Consensus 176 ~~~~-~~~~~~~-~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 231 (353)
++|. ++...+. +..+ ++|+.++++.|.+...+.. .+++++.|+++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---------GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---------TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---------HhccCceeeccCc
Confidence 8884 7766544 6777 8888888888877643321 4567788877654
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=6.5e-23 Score=177.59 Aligned_cols=222 Identities=13% Similarity=0.158 Sum_probs=108.3
Q ss_pred CcEEEcccCcccccCCcccCCC--CCccEEEecCCccCCccCccccCCCcccEeecCCCccccc-ChhhhhccccccEEE
Q 047624 25 LESLFLAHNELVGKVPGKLGSL--SKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQ-IPETLGELKRMRFIG 101 (353)
Q Consensus 25 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ 101 (353)
++.++++++.+. +..+..+ ++++.|+++++.+.+..+. +..+++|++|++++|.+... ++..+..+++|+.|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455555554433 2233333 4555555555555433222 33455555555555554432 344444555555555
Q ss_pred eCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccc-cccccccCCCCccEEecCCC-c
Q 047624 102 FGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTG-PIPASISNASNLMRLTIPQN-G 179 (353)
Q Consensus 102 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~-~ 179 (353)
+++|.+....+..+..+++|++|++++|. .+.+ .++..+..+++|++|++++| .
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~------------------------~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCS------------------------GFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCB------------------------SCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCC------------------------CCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 55555443344444444444444444441 2332 13333445566666666665 4
Q ss_pred ceee--CCCccccc-CccEEEEeecc--CCCCCcchhHHHhhhcccCCccEEEccCCc-CCccCchhHhhhcccCcEEEe
Q 047624 180 FSGK--VPSLENLH-KLQWVVIAVNH--LGNGEKDDLEFVNSLVNAYGLELLEINTNN-FGGMLPEAVGNLSTRIRILRV 253 (353)
Q Consensus 180 ~~~~--~~~~~~~~-~L~~l~l~~~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l 253 (353)
+++. ...+..++ +|+.|+++.|. +.+ ..+...+..+++|+.|++++|. +++..+..+..+ ++|++|++
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-----~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l-~~L~~L~l 254 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQK-----SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSL 254 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-----HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC-TTCCEEEC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCH-----HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC-CCCCEeeC
Confidence 4431 11133444 55555554442 110 1333444556667777776666 444555555555 36777777
Q ss_pred cCcc-ccCCCchhhcCCCCCcEEecCCc
Q 047624 254 GNNQ-LFGNIPSELRNLVNLELLELGDN 280 (353)
Q Consensus 254 ~~~~-~~~~~~~~~~~~~~L~~L~l~~n 280 (353)
++|. +.+.....+..+++|++|++++|
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 7663 32222234556666666666666
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=9.6e-23 Score=179.84 Aligned_cols=248 Identities=19% Similarity=0.260 Sum_probs=145.8
Q ss_pred ccCccccCCCcccEeecCCCcccccChh----hhhccccccEEEeCCCcCC---CCCchhh-------cCCCCCCEEEcC
Q 047624 62 EIPSSFGNLSSLERLSAAANQFVGQIPE----TLGELKRMRFIGFGANKLS---GEIPSSI-------YNLSSLSNFDFP 127 (353)
Q Consensus 62 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~---~~~~~~l-------~~l~~L~~L~l~ 127 (353)
.++..+..+++|++|++++|.+....+. .+..+++|+.|++++|.+. +.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4555666677777777777766543222 2445666677766665332 2223322 344555555555
Q ss_pred CCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCC-----cccc---------cCc
Q 047624 128 VNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPS-----LENL---------HKL 193 (353)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~~~~---------~~L 193 (353)
+|.+...... .++..+..+++|++|++++|.+...... +..+ ++|
T Consensus 103 ~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 103 DNAFGPTAQE---------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp SCCCCTTTHH---------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHH---------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC
Confidence 5554321000 1333344455555555555554321111 2222 566
Q ss_pred cEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCcc-----CchhHhhhcccCcEEEecCcccc----CCCch
Q 047624 194 QWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGM-----LPEAVGNLSTRIRILRVGNNQLF----GNIPS 264 (353)
Q Consensus 194 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~ 264 (353)
+.|++++|.++..... .+...+..+++|+.|++++|.+.+. .+..+... ++|++|++++|.++ ..+|.
T Consensus 162 ~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 162 RSIICGRNRLENGSMK--EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CEEECCSSCCTGGGHH--HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHH
T ss_pred cEEECCCCCCCcHHHH--HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHH
Confidence 6666666655421111 2224556677777777777776532 12244444 47888888888774 34667
Q ss_pred hhcCCCCCcEEecCCceeeeec----CC----CCCCCCcEEEeecccccc----cCChhh-hcCCCCcEEecCCCcCCCC
Q 047624 265 ELRNLVNLELLELGDNQFTGRI----PG----RNLTSLAILVFVENMLEG----SIPSSL-GKCQNLILLDLSNNNLSGT 331 (353)
Q Consensus 265 ~~~~~~~L~~L~l~~n~~~~~~----~~----~~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~l~l~~n~~~~~ 331 (353)
.+..+++|++|++++|.+.+.. +. ..+++|+.|++++|.+.+ .+|..+ .++++|+.|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 7778888888888888876541 11 347888888888888876 477766 5679999999999999866
Q ss_pred CC
Q 047624 332 IP 333 (353)
Q Consensus 332 ~~ 333 (353)
.+
T Consensus 319 ~~ 320 (386)
T 2ca6_A 319 DD 320 (386)
T ss_dssp SH
T ss_pred hh
Confidence 53
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=4.1e-20 Score=153.05 Aligned_cols=179 Identities=20% Similarity=0.269 Sum_probs=95.0
Q ss_pred CCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeC
Q 047624 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFG 103 (353)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 103 (353)
..++++++++.+.. +|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34455555555442 232222 355555555555554444455555555555555555554444445555555555555
Q ss_pred CCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceee
Q 047624 104 ANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGK 183 (353)
Q Consensus 104 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 183 (353)
+|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 55555444444555556666666665555 33333333455666666666655533333455556666666666666554
Q ss_pred CCC-cccccCccEEEEeeccCCCC
Q 047624 184 VPS-LENLHKLQWVVIAVNHLGNG 206 (353)
Q Consensus 184 ~~~-~~~~~~L~~l~l~~~~~~~~ 206 (353)
.+. +..+++|+.+++++|.+...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 442 55556666666666655443
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=9.8e-23 Score=179.78 Aligned_cols=251 Identities=16% Similarity=0.210 Sum_probs=112.9
Q ss_pred cCcccccCCCCcEEEcccCccccc----CCcccCCCCCccEEEecCCccC---CccCccc-------cCCCcccEeecCC
Q 047624 15 IPDNISHCVNLESLFLAHNELVGK----VPGKLGSLSKLRTLAVHHNNLS---GEIPSSF-------GNLSSLERLSAAA 80 (353)
Q Consensus 15 ~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~ 80 (353)
++..+..+++|++|++++|.+... ++..+.++++|++|++++|.+. +.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 334455666677777766665533 2233556666666666665332 2223222 4555566666655
Q ss_pred Ccccc----cChhhhhccccccEEEeCCCcCCCCCchh----hcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEecc
Q 047624 81 NQFVG----QIPETLGELKRMRFIGFGANKLSGEIPSS----IYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVG 152 (353)
Q Consensus 81 ~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 152 (353)
|.+.. .++..+..+++|+.|++++|.+....+.. +..+. .+. +....++|++|+++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~--------~~~--------~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA--------VNK--------KAKNAPPLRSIICG 167 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH--------HHH--------HHHTCCCCCEEECC
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh--------hhh--------hcccCCCCcEEECC
Confidence 55543 23444455555555555555553221111 22220 000 00000344444444
Q ss_pred Cccccc-ccc---ccccCCCCccEEecCCCccee-----eCC-CcccccCccEEEEeeccCCCCCcchhHHHhhhcccCC
Q 047624 153 DNQFTG-PIP---ASISNASNLMRLTIPQNGFSG-----KVP-SLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYG 222 (353)
Q Consensus 153 ~~~~~~-~~~---~~l~~~~~L~~L~l~~~~~~~-----~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 222 (353)
+|.+.. .++ ..+..+++|++|++++|.+.. ..+ .+..+++|+.|+++.|.++... ...+...+..+++
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--SSALAIALKSWPN 245 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--HHHHHHHGGGCTT
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--HHHHHHHHccCCC
Confidence 444431 111 223344455555555554441 111 3344444555555444432100 0123334455555
Q ss_pred ccEEEccCCcCCcc----CchhHhh--hcccCcEEEecCccccC----CCchhh-cCCCCCcEEecCCceeee
Q 047624 223 LELLEINTNNFGGM----LPEAVGN--LSTRIRILRVGNNQLFG----NIPSEL-RNLVNLELLELGDNQFTG 284 (353)
Q Consensus 223 L~~L~l~~~~~~~~----~~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~n~~~~ 284 (353)
|+.|++++|.+.+. ++..+.. . ++|++|++++|.+++ .+|..+ .++++|++|++++|++.+
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~-~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSS-CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccC-CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 55565555555433 1222211 2 355666666655553 244444 345566666666655553
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=163.46 Aligned_cols=203 Identities=16% Similarity=0.138 Sum_probs=122.9
Q ss_pred CCCCcEEEcccCcccccCCccc--CCCCCccEEEecCCccCCccC----ccccCCCcccEeecCCCcccccChhhhhccc
Q 047624 22 CVNLESLFLAHNELVGKVPGKL--GSLSKLRTLAVHHNNLSGEIP----SSFGNLSSLERLSAAANQFVGQIPETLGELK 95 (353)
Q Consensus 22 l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 95 (353)
+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4557777777776665556555 666777777777776654322 2334566777777777776655556666677
Q ss_pred cccEEEeCCCcCCCC--C--chhhcCCCCCCEEEcCCCCCCCCCCcc---ccCCCCCCCEEeccCccccccccccccCC-
Q 047624 96 RMRFIGFGANKLSGE--I--PSSIYNLSSLSNFDFPVNQLQGGLPTD---LGFTLPNLERLNVGDNQFTGPIPASISNA- 167 (353)
Q Consensus 96 ~L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~- 167 (353)
+|+.|++++|.+.+. . +..+..+++|++|++++|.+. .++.. +...+++|++|++++|.+....|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 777777777765421 1 112345667777777777664 22221 22245667777777777665545555444
Q ss_pred --CCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCc
Q 047624 168 --SNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGG 235 (353)
Q Consensus 168 --~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 235 (353)
++|++|++++|.++.++..+. ++|+.|+++.|.+.+.+ .+..+++|+.|++++|.+++
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~--------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAP--------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCC--------CTTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCc--------hhhhCCCccEEECcCCCCCC
Confidence 577777777777765444332 57777777777665431 13455777777777777653
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=6.2e-20 Score=153.78 Aligned_cols=191 Identities=20% Similarity=0.276 Sum_probs=159.0
Q ss_pred CcEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 1 LRILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
|+.|+++++.+.. . ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 43 L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 43 IDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp CCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred eeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 5789999999874 3 3488899999999999998753 4688999999999999999866667789999999999999
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccc
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPI 160 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 160 (353)
|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .++......+++|+.|++++|.+....
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCccC
Confidence 9998766777899999999999999999666666789999999999999998 555544447899999999999998766
Q ss_pred cccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeecc
Q 047624 161 PASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202 (353)
Q Consensus 161 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~ 202 (353)
+..+..+++|++|++++|.+... ++.++++.+..+.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINK 233 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHH
T ss_pred HHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHh
Confidence 66678899999999999987643 3445544444443
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=6.8e-20 Score=156.27 Aligned_cols=194 Identities=19% Similarity=0.337 Sum_probs=123.3
Q ss_pred cccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhcccccc
Q 047624 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMR 98 (353)
Q Consensus 19 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 98 (353)
...+++|++|+++++.+... + .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.. . ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence 34566777777777766532 2 4566777777777777666 3333 6677777777777776653 2 3466677777
Q ss_pred EEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCC
Q 047624 99 FIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQN 178 (353)
Q Consensus 99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 178 (353)
.|++++|.+.. ++. +..+++|++|++++|.+. .++. +. .+++|+.|++++|.+.+ ++. +..+++|++|++++|
T Consensus 111 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 111 TLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp EEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred EEECCCCCCCC-chh-hcCCCCCCEEECCCCccC-cCcc-cc-CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCC
Confidence 77777777663 332 666677777777777665 3332 22 56677777777776653 222 666777777777777
Q ss_pred cceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCC
Q 047624 179 GFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFG 234 (353)
Q Consensus 179 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 234 (353)
.+++..+ +..+++|+.|++++|.+.+.. .+..+++|+.|++++|.+.
T Consensus 184 ~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 184 KISDISP-LASLPNLIEVHLKNNQISDVS--------PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCCGG-GGGCTTCCEEECTTSCCCBCG--------GGTTCTTCCEEEEEEEEEE
T ss_pred ccCcChh-hcCCCCCCEEEccCCccCccc--------cccCCCCCCEEEccCCeee
Confidence 7665443 666677777777777665422 2566677777777777665
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.3e-20 Score=160.72 Aligned_cols=211 Identities=20% Similarity=0.348 Sum_probs=166.9
Q ss_pred EeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcc
Q 047624 101 GFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGF 180 (353)
Q Consensus 101 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 180 (353)
.+....+.... ....+++|+.|+++++.+. .++ .+. .+++|+.|++++|.+.+ ++. +..+++|++|++++|.+
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~-~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCC
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhh-ccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcC
Confidence 34444444222 2455789999999999987 455 333 68999999999999874 344 88899999999999998
Q ss_pred eeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccC
Q 047624 181 SGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFG 260 (353)
Q Consensus 181 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 260 (353)
.+. +.+..+++|+.|+++.|.+.+. ..+..+++|+.|++++|.+.+..+ +..+ ++|++|++++|.+.+
T Consensus 98 ~~~-~~~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 98 KNV-SAIAGLQSIKTLDLTSTQITDV--------TPLAGLSNLQVLYLDLNQITNISP--LAGL-TNLQYLSIGNAQVSD 165 (308)
T ss_dssp SCC-GGGTTCTTCCEEECTTSCCCCC--------GGGTTCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCC
T ss_pred CCc-hhhcCCCCCCEEECCCCCCCCc--------hhhcCCCCCCEEECCCCccCcCcc--ccCC-CCccEEEccCCcCCC
Confidence 875 4688899999999999988653 236788999999999998875433 5556 499999999999874
Q ss_pred CCchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcc
Q 047624 261 NIPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTE 335 (353)
Q Consensus 261 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 335 (353)
.+. +..+++|++|++++|.+.+..+...+++|+.|++++|++.+.. .+..+++|+.|++++|++++ .|..
T Consensus 166 -~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~-~~~~ 235 (308)
T 1h6u_A 166 -LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN-QPVF 235 (308)
T ss_dssp -CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC-CCEE
T ss_pred -Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec-CCee
Confidence 343 8889999999999999987777788899999999999998544 38889999999999999984 4443
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=160.42 Aligned_cols=207 Identities=15% Similarity=0.131 Sum_probs=110.0
Q ss_pred cccccEEEeCCCcCCCCCchhh--cCCCCCCEEEcCCCCCCCCCC----ccccCCCCCCCEEeccCccccccccccccCC
Q 047624 94 LKRMRFIGFGANKLSGEIPSSI--YNLSSLSNFDFPVNQLQGGLP----TDLGFTLPNLERLNVGDNQFTGPIPASISNA 167 (353)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 167 (353)
+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+....+ ..+. .+++|++|++++|.+....+..+..+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccC
Confidence 3456666666666655555554 555666666666666543222 1111 34455555555555543333444455
Q ss_pred CCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCcc--CchhH-hhh
Q 047624 168 SNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGM--LPEAV-GNL 244 (353)
Q Consensus 168 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~-~~~ 244 (353)
++|++|++++|.+.+... ......+..+++|++|++++|.++.. .+.++ ..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~-------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERG-------------------------LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp TTCCEEECCSCTTCHHHH-------------------------HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred CCCCEEECCCCCCccchh-------------------------hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 555555555554322100 00001113445566666666655411 11122 233
Q ss_pred cccCcEEEecCccccCCCchhhcCC---CCCcEEecCCceeeeecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEE
Q 047624 245 STRIRILRVGNNQLFGNIPSELRNL---VNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILL 321 (353)
Q Consensus 245 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 321 (353)
++|++|++++|.+.+..|..+..+ ++|++|++++|.++ ..+...+++|+.|++++|++++ +|. +..+++|+.|
T Consensus 224 -~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L 299 (310)
T 4glp_A 224 -VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNR-APQ-PDELPEVDNL 299 (310)
T ss_dssp -CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCS-CCC-TTSCCCCSCE
T ss_pred -CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCC-Cch-hhhCCCccEE
Confidence 477777777777775556555554 57777777777776 3343444666666666666663 232 4566677777
Q ss_pred ecCCCcCCC
Q 047624 322 DLSNNNLSG 330 (353)
Q Consensus 322 ~l~~n~~~~ 330 (353)
++++|++++
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 777776663
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=6.5e-19 Score=145.80 Aligned_cols=178 Identities=22% Similarity=0.285 Sum_probs=148.6
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
++++++++.++ .+|..+. ++++.|+++++.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 56888888888 4555443 68999999999998888888899999999999999998777777899999999999999
Q ss_pred cccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccc
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIP 161 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 161 (353)
.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+....+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 998766677889999999999999998555556788899999999999987 5555444478899999999999886656
Q ss_pred ccccCCCCccEEecCCCcceee
Q 047624 162 ASISNASNLMRLTIPQNGFSGK 183 (353)
Q Consensus 162 ~~l~~~~~L~~L~l~~~~~~~~ 183 (353)
..+..+++|++|++++|++...
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 6778889999999999988754
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1.6e-19 Score=148.42 Aligned_cols=197 Identities=20% Similarity=0.229 Sum_probs=151.9
Q ss_pred CccEEEecCCccCCccCccccCCCcccEeecCCCc-ccccChhhhhccccccEEEeCC-CcCCCCCchhhcCCCCCCEEE
Q 047624 48 KLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ-FVGQIPETLGELKRMRFIGFGA-NKLSGEIPSSIYNLSSLSNFD 125 (353)
Q Consensus 48 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 125 (353)
++++|++++|.+.+..+..|..+++|++|++++|. +....+..+..+++|+.|++++ |.+....+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 89999999999885555588899999999999996 7755566788899999999998 888855556788889999999
Q ss_pred cCCCCCCCCCCccccCCCCCCC---EEeccCc-cccccccccccCCCCcc-EEecCCCcceeeCCCcccccCccEEEEee
Q 047624 126 FPVNQLQGGLPTDLGFTLPNLE---RLNVGDN-QFTGPIPASISNASNLM-RLTIPQNGFSGKVPSLENLHKLQWVVIAV 200 (353)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~L~~l~l~~ 200 (353)
+++|.+. .++. + ..+++|+ .+++++| .+....+..+..+++|+ +|++++|.++.........++|+.++++.
T Consensus 112 l~~n~l~-~lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLK-MFPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCC-SCCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred CCCCCCc-cccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 9999887 4665 3 3677787 9999998 77755555678889999 99999999887666533347899999988
Q ss_pred cc-CCCCCcchhHHHhhhccc-CCccEEEccCCcCCccCchhHhhhcccCcEEEecCcc
Q 047624 201 NH-LGNGEKDDLEFVNSLVNA-YGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQ 257 (353)
Q Consensus 201 ~~-~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 257 (353)
|. +...+ ...+..+ ++|+.+++++|.+.+ +|.. .+ ++|+.|++.++.
T Consensus 189 n~~l~~i~------~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~-~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVID------KDAFGGVYSGPSLLDVSQTSVTA-LPSK--GL-EHLKELIARNTW 237 (239)
T ss_dssp CTTCCEEC------TTTTTTCSBCCSEEECTTCCCCC-CCCT--TC-TTCSEEECTTC-
T ss_pred CCCcccCC------HHHhhccccCCcEEECCCCcccc-CChh--Hh-ccCceeeccCcc
Confidence 84 65322 2345666 889999999998874 3433 33 588999888763
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.5e-18 Score=139.43 Aligned_cols=179 Identities=21% Similarity=0.233 Sum_probs=142.3
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
+.++.+++.++. +|..+ .+++++|+++++.+....+..+.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 356777777773 44433 468999999999998777777889999999999999998555566889999999999999
Q ss_pred cccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccc
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIP 161 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 161 (353)
.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+. .++......+++|+.+++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee----
Confidence 998666666789999999999999998666666888999999999999988 555554447899999999998664
Q ss_pred ccccCCCCccEEecCCCcceeeCCC-ccccc
Q 047624 162 ASISNASNLMRLTIPQNGFSGKVPS-LENLH 191 (353)
Q Consensus 162 ~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~ 191 (353)
..+++++.|++..|.+++..+. +..++
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ---cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 3467888888888887765443 44433
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=3e-18 Score=148.89 Aligned_cols=239 Identities=17% Similarity=0.187 Sum_probs=123.4
Q ss_pred cEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCc-hhhcCCCCCCE-EEcC
Q 047624 50 RTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIP-SSIYNLSSLSN-FDFP 127 (353)
Q Consensus 50 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~-L~l~ 127 (353)
++++.+++.++ .+|..+. +++++|++++|.+....+..|..+++|+.|++++|.+.+.++ ..|..+++++. +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555555 4555442 456666666666654333445666666666666665543333 23444555443 2333
Q ss_pred CCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCC-CcceeeCCC-cccccCccEEEEeeccCCC
Q 047624 128 VNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQ-NGFSGKVPS-LENLHKLQWVVIAVNHLGN 205 (353)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~-~~~~~~L~~l~l~~~~~~~ 205 (353)
.|.+. .++...+..+++|+.+++++|.+....+..+....++..+++.+ +.+...... +..+
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~--------------- 152 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL--------------- 152 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS---------------
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc---------------
Confidence 44444 33222222455555555555555432222222333344444433 222222211 1111
Q ss_pred CCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecC-ccccCCCc-hhhcCCCCCcEEecCCceee
Q 047624 206 GEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGN-NQLFGNIP-SELRNLVNLELLELGDNQFT 283 (353)
Q Consensus 206 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~~L~~L~l~~n~~~ 283 (353)
...++.|++++|.+.. ++...+.. .+++++++.+ +.+. .+| .+|.++++|++|++++|+++
T Consensus 153 --------------~~~l~~L~L~~N~i~~-i~~~~f~~-~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 153 --------------SFESVILWLNKNGIQE-IHNSAFNG-TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp --------------BSSCEEEECCSSCCCE-ECTTSSTT-EEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred --------------chhhhhhccccccccC-CChhhccc-cchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence 1245566666666653 33333333 3677777765 3444 443 45677777777777777776
Q ss_pred eecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCC
Q 047624 284 GRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNN 326 (353)
Q Consensus 284 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 326 (353)
. .+...+.+|++|.+.++...+.+| .+..+++|+.+++.++
T Consensus 216 ~-lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 216 S-LPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp C-CCSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred c-cChhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 3 344567777777776665555666 3667777777777653
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=8.4e-18 Score=146.06 Aligned_cols=197 Identities=15% Similarity=0.167 Sum_probs=99.7
Q ss_pred EEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccC-ccccCCCcccE-eecCC
Q 047624 3 ILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIP-SSFGNLSSLER-LSAAA 80 (353)
Q Consensus 3 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~~ 80 (353)
+++-++++++ .+|..+ .+++++|++++|.+..+.+.+|.++++|++|++++|.+.+.++ .+|..++++++ +.+.+
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3445555555 344433 2456666666666665555566666666666666666543333 34566666554 33344
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCC-CCCCCCCccccCCC-CCCCEEeccCccccc
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVN-QLQGGLPTDLGFTL-PNLERLNVGDNQFTG 158 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 158 (353)
|.+....+..+..+++|+.|++++|.+....+..+....++..+++..+ .+. .++...+... ..++.|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc-
Confidence 5555444555666666666666666665333333333344555555432 232 3332221122 23555555555554
Q ss_pred cccccccCCCCccEEecCC-CcceeeCCC-cccccCccEEEEeeccCC
Q 047624 159 PIPASISNASNLMRLTIPQ-NGFSGKVPS-LENLHKLQWVVIAVNHLG 204 (353)
Q Consensus 159 ~~~~~l~~~~~L~~L~l~~-~~~~~~~~~-~~~~~~L~~l~l~~~~~~ 204 (353)
.++......++++++.+.+ |.+..+... +..+++|+.|++++|.++
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 2333333444555555543 334333322 444555555555555443
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=1e-17 Score=134.59 Aligned_cols=170 Identities=17% Similarity=0.227 Sum_probs=132.1
Q ss_pred cEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCC
Q 047624 26 ESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGAN 105 (353)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 105 (353)
+.++..++.+..+ |..+ .++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 5667777766533 3333 458999999999988655666888999999999999888655566788999999999999
Q ss_pred cCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCC
Q 047624 106 KLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVP 185 (353)
Q Consensus 106 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 185 (353)
.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+....+..+..+++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 998555556788899999999999887 5555444478899999999998885555557788999999999997653
Q ss_pred CcccccCccEEEEeeccCCC
Q 047624 186 SLENLHKLQWVVIAVNHLGN 205 (353)
Q Consensus 186 ~~~~~~~L~~l~l~~~~~~~ 205 (353)
.++.++++.+..+.+.+
T Consensus 163 ---~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTT
T ss_pred ---CCCCHHHHHHHHHhCCc
Confidence 45677777777777765
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.3e-17 Score=139.38 Aligned_cols=174 Identities=21% Similarity=0.335 Sum_probs=138.0
Q ss_pred cccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhcccccc
Q 047624 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMR 98 (353)
Q Consensus 19 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 98 (353)
+..+++|++|+++++.+... + .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.. +..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD--LSSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC--GGGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC--ChhhccCCCCC
Confidence 45688899999999887744 3 47788999999999998874 444 8889999999999998874 34488889999
Q ss_pred EEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCC
Q 047624 99 FIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQN 178 (353)
Q Consensus 99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 178 (353)
.|++++|.+.. + ..+..+++|+.|++++|.+. .+ ..+. .+++|+.|++++|.+.+..+ +..+++|++|++++|
T Consensus 116 ~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~-~~l~-~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 116 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CC-GGGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC-cc-hhhc-cCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 99999998874 3 45778889999999999887 33 3333 68899999999998875433 778899999999999
Q ss_pred cceeeCCCcccccCccEEEEeeccCCCC
Q 047624 179 GFSGKVPSLENLHKLQWVVIAVNHLGNG 206 (353)
Q Consensus 179 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 206 (353)
.+++.. .+..+++|+.|++++|.+...
T Consensus 189 ~i~~l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 189 HISDLR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCCBCG-GGTTCTTCSEEEEEEEEEECC
T ss_pred cCCCCh-hhccCCCCCEEECcCCcccCC
Confidence 888753 478889999999998877553
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2.9e-17 Score=132.87 Aligned_cols=153 Identities=19% Similarity=0.229 Sum_probs=82.2
Q ss_pred cEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCC
Q 047624 26 ESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGAN 105 (353)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 105 (353)
+.++++++.+.. +|..+. +++++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 344555554442 232222 35555555555555333345555555555555555555444555555566666666666
Q ss_pred cCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCccee
Q 047624 106 KLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSG 182 (353)
Q Consensus 106 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 182 (353)
.+....+..+..+++|++|++++|.+....+..+ ..+++|+.|++++|.+....+..+..+++|++|++++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAF-QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc-CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 5553333344555666666666666553222222 255666666666666654444445566667777777766543
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.2e-17 Score=145.56 Aligned_cols=177 Identities=18% Similarity=0.213 Sum_probs=128.8
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccC-CCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLG-SLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
++++++++.++. +|..+. +.++.|++++|.+....+..+. ++++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 457777887773 554332 4578888888888777676676 788888888888888755556788888888888888
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCcccc---CCCCCCCEEeccCcccc
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLG---FTLPNLERLNVGDNQFT 157 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 157 (353)
|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+ ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 8887666666788888888888888887666677788888888888888877 5555443 35778888888888777
Q ss_pred ccccccccCCCC--ccEEecCCCccee
Q 047624 158 GPIPASISNASN--LMRLTIPQNGFSG 182 (353)
Q Consensus 158 ~~~~~~l~~~~~--L~~L~l~~~~~~~ 182 (353)
...+..+..++. ++.|++.+|++..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 443345556665 3677888877653
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.3e-17 Score=152.35 Aligned_cols=189 Identities=24% Similarity=0.321 Sum_probs=114.5
Q ss_pred cccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEec
Q 047624 96 RMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTI 175 (353)
Q Consensus 96 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 175 (353)
+++.|++++|.+.+ +|..+ +++|++|++++|.+. .+| ..+++|+.|++++|.+.. +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 67777777777663 55433 256777777777766 455 135667777777766653 444 332 6666666
Q ss_pred CCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecC
Q 047624 176 PQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGN 255 (353)
Q Consensus 176 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 255 (353)
++|.+++++. .+++ |+.|++++|.+++ +|. .+++|++|++++
T Consensus 128 s~N~l~~lp~---~l~~------------------------------L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 128 DNNQLTMLPE---LPAL------------------------------LEYINADNNQLTM-LPE----LPTSLEVLSVRN 169 (571)
T ss_dssp CSSCCSCCCC---CCTT------------------------------CCEEECCSSCCSC-CCC----CCTTCCEEECCS
T ss_pred CCCcCCCCCC---cCcc------------------------------ccEEeCCCCccCc-CCC----cCCCcCEEECCC
Confidence 6666555332 3444 4555555554442 232 124667777777
Q ss_pred ccccCCCchhhcCCCCCcEEecCCceeeeecCCCCCCCC-------cEEEeecccccccCChhhhcCCCCcEEecCCCcC
Q 047624 256 NQLFGNIPSELRNLVNLELLELGDNQFTGRIPGRNLTSL-------AILVFVENMLEGSIPSSLGKCQNLILLDLSNNNL 328 (353)
Q Consensus 256 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 328 (353)
|.+++ +|. +. ++|++|++++|.++.... ...+| +.|++++|.++ .+|..+..+++|+.|++++|++
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSC
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcC
Confidence 66663 444 43 667777777776663322 23355 77788877777 5777777788888888888888
Q ss_pred CCCCCcccccccc
Q 047624 329 SGTIPTEVIGLSS 341 (353)
Q Consensus 329 ~~~~~~~~~~l~~ 341 (353)
++.+|..+..+..
T Consensus 243 ~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 243 SSRIRESLSQQTA 255 (571)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCcCHHHHHHhhc
Confidence 8777777666543
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4.5e-17 Score=137.55 Aligned_cols=172 Identities=23% Similarity=0.398 Sum_probs=112.7
Q ss_pred CCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCE
Q 047624 44 GSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSN 123 (353)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 123 (353)
..+++|++|++++|.+. .++ .+..+++|++|++++|.+... +. +..+++|+.|++++|.+.. ++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 45667777777777665 333 366677777777777777642 32 6677777777777777763 33 3666777777
Q ss_pred EEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccC
Q 047624 124 FDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHL 203 (353)
Q Consensus 124 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 203 (353)
|++++|.+. .++ .+. .+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|+.|+++.|.+
T Consensus 117 L~L~~n~i~-~~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCC-CCG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCC-CCh-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 777777765 232 232 567777777777776643 456667777777777777766554 66677777777777766
Q ss_pred CCCCcchhHHHhhhcccCCccEEEccCCcCCc
Q 047624 204 GNGEKDDLEFVNSLVNAYGLELLEINTNNFGG 235 (353)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 235 (353)
.+. ..+..+++|+.|++++|.+..
T Consensus 191 ~~l--------~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 SDL--------RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CBC--------GGGTTCTTCSEEEEEEEEEEC
T ss_pred CCC--------hhhccCCCCCEEECcCCcccC
Confidence 532 235666777777777776653
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=1.3e-16 Score=129.88 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=94.4
Q ss_pred CcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCC
Q 047624 25 LESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGA 104 (353)
Q Consensus 25 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 104 (353)
-+.++.+++.+.. +|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4455666555542 233222 5666666666666655566666666666666666666544444456666677777776
Q ss_pred CcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCccee
Q 047624 105 NKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSG 182 (353)
Q Consensus 105 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 182 (353)
|.+....+..+..+++|+.|++++|.+. .++..+. .+++|+.|++++|.+....+..+..+++|++|++++|++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 6666444445566667777777777666 5555553 56677777777776664444456667777777777776654
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=7.9e-17 Score=128.07 Aligned_cols=155 Identities=18% Similarity=0.268 Sum_probs=122.4
Q ss_pred cccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhcccccc
Q 047624 19 ISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMR 98 (353)
Q Consensus 19 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 98 (353)
...+++|++|+++++.+.. ++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 4677889999999988873 34 5788889999999988664 334788889999999999988866677788899999
Q ss_pred EEEeCCCcCCCCCchhhcCCCCCCEEEcCCCC-CCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCC
Q 047624 99 FIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQ-LQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQ 177 (353)
Q Consensus 99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 177 (353)
.|++++|.+....+..+..+++|++|++++|. +. .++ .+. .+++|+.|++++|.+.+ ++ .+..+++|++|++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~-~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK-TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG-GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc-CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 99999999886677788888999999999987 54 554 333 68899999999998874 33 677889999999999
Q ss_pred Cccee
Q 047624 178 NGFSG 182 (353)
Q Consensus 178 ~~~~~ 182 (353)
|.+.+
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 88754
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=1.2e-16 Score=129.22 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=97.4
Q ss_pred cEEEcccCcccccCCcccCCCCCccEEEecCCccCCccC-ccccCCCcccEeecCCCcccccChhhhhccccccEEEeCC
Q 047624 26 ESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIP-SSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGA 104 (353)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 104 (353)
++++++++.+.. +|..+. ..+++|++++|.+.+..+ ..|..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 456666666553 333332 245667777766663322 3466667777777777766655555666677777777777
Q ss_pred CcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCccee
Q 047624 105 NKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSG 182 (353)
Q Consensus 105 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 182 (353)
|.+....+..+..+++|++|++++|.+....+..+. .+++|+.|++++|.+....+..+..+++|++|++++|++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 777655555566677777777777776633333333 56777777777777765556667777777778887777664
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=2.2e-16 Score=144.41 Aligned_cols=188 Identities=22% Similarity=0.305 Sum_probs=133.8
Q ss_pred CCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeC
Q 047624 24 NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFG 103 (353)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 103 (353)
+++.|+++++.+.+ +|..+ .++|++|++++|.+. .+| ..+++|++|++++|.+.+ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888775 44434 367888888888877 566 446788888888888775 555 443 78888888
Q ss_pred CCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceee
Q 047624 104 ANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGK 183 (353)
Q Consensus 104 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 183 (353)
+|.+.+ +|. .+++|+.|++++|.+. .++. .+++|+.|++++|.+.. +|. +. ++|+.|++++|.++.+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence 888874 554 5678888888888876 3554 36778888888888774 555 44 7888888888888755
Q ss_pred CCCcccccCc-------cEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhc
Q 047624 184 VPSLENLHKL-------QWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLS 245 (353)
Q Consensus 184 ~~~~~~~~~L-------~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 245 (353)
+. +.. +| +.|++++|.+... +..+..+++|+.|++++|.+.+..|..+..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-------p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRITHI-------PENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCCCC-------CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcceec-------CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 54 332 66 8888888877643 23445578888888888888877777766653
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=4.5e-17 Score=129.50 Aligned_cols=154 Identities=15% Similarity=0.267 Sum_probs=122.9
Q ss_pred CCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCE
Q 047624 44 GSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSN 123 (353)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 123 (353)
..+++|++|++++|.+. .++ .+..+++|++|++++|.+. .+..+..+++|+.|++++|.+....+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56788999999999887 556 6888999999999999665 3446888999999999999988667777888999999
Q ss_pred EEcCCCCCCCCCCccccCCCCCCCEEeccCcc-ccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeecc
Q 047624 124 FDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQ-FTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNH 202 (353)
Q Consensus 124 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~ 202 (353)
|++++|.+....+..+. .+++|+.|++++|. +. .++ .+..+++|++|++++|.+++.. .+..+++|+.|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 99999988744455554 78899999999997 54 444 6788899999999999888754 67888999999999887
Q ss_pred CCC
Q 047624 203 LGN 205 (353)
Q Consensus 203 ~~~ 205 (353)
+++
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 653
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=9.1e-17 Score=129.93 Aligned_cols=153 Identities=21% Similarity=0.295 Sum_probs=133.0
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
+.++.+++.++ .+|..+. ++++.|++++|.+..+.+..|..+++|++|++++|.+....|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46788899888 4565443 78999999999999888888999999999999999998777899999999999999999
Q ss_pred cccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccc
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTG 158 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 158 (353)
.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.+++.+|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcCC
Confidence 998655566789999999999999999777888999999999999999998 5555444478999999999998863
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1.2e-16 Score=147.59 Aligned_cols=172 Identities=20% Similarity=0.343 Sum_probs=86.4
Q ss_pred ccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccE
Q 047624 20 SHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRF 99 (353)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 99 (353)
..+++|+.|+++++.+... + .+..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.. + ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 3455555555555554422 2 345555555555555555422 22 5555555555555555542 2 24555555555
Q ss_pred EEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCc
Q 047624 100 IGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNG 179 (353)
Q Consensus 100 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 179 (353)
|++++|.+.. + ..+..+++|+.|++++|.+.. + ..+. .+++|+.|++++|.+....+ +..+++|++|++++|.
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 5555555542 2 234555555555555555542 2 2222 45555555555555543222 4555555555555555
Q ss_pred ceeeCCCcccccCccEEEEeeccCCC
Q 047624 180 FSGKVPSLENLHKLQWVVIAVNHLGN 205 (353)
Q Consensus 180 ~~~~~~~~~~~~~L~~l~l~~~~~~~ 205 (353)
+++. +.+..+++|+.|+++.|.+..
T Consensus 187 i~~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 ISDL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCC-hHHccCCCCCEEEccCCcCcC
Confidence 5543 335555555555555554433
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1e-16 Score=148.07 Aligned_cols=190 Identities=21% Similarity=0.290 Sum_probs=127.9
Q ss_pred cccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEec
Q 047624 96 RMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTI 175 (353)
Q Consensus 96 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 175 (353)
.+..+.+..+.+.... .+..+++|+.|+++++.+. .++. +. .+++|+.|++++|.+.... . +..+++|+.|++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~~-l~-~l~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIK-P-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCTT-GG-GCTTCCEEECTTSCCCCCG-G-GGGCTTCCEEEC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CChH-Hc-cCCCCCEEEeeCCCCCCCh-h-hccCCCCCEEEC
Confidence 3444455555555322 2456788999999999886 4443 33 6889999999999887543 3 778899999999
Q ss_pred CCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecC
Q 047624 176 PQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGN 255 (353)
Q Consensus 176 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 255 (353)
++|.+... +.+..+++|+.|+++.|.+.+. ..+..+++|+.|++++|.+.+. ..+..++ +|+.|++++
T Consensus 95 s~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~ 162 (605)
T 1m9s_A 95 DENKIKDL-SSLKDLKKLKSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLED 162 (605)
T ss_dssp CSSCCCCC-TTSTTCTTCCEEECTTSCCCCC--------GGGGGCTTCSEEECCSSCCCCC--GGGGSCT-TCSEEECCS
T ss_pred cCCCCCCC-hhhccCCCCCEEEecCCCCCCC--------ccccCCCccCEEECCCCccCCc--hhhcccC-CCCEEECcC
Confidence 99988764 3577778888888887776542 2355667777777777766643 3444443 677777777
Q ss_pred ccccCCCchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeecccccc
Q 047624 256 NQLFGNIPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENMLEG 306 (353)
Q Consensus 256 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~ 306 (353)
|.+.+..| +..+++|+.|++++|.+.+......+++|+.|++++|++.+
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence 77664333 66677777777777766655444566666677666666654
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=2.4e-16 Score=128.30 Aligned_cols=153 Identities=24% Similarity=0.319 Sum_probs=131.9
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
+.++.+++.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 46788888887 4555443 89999999999999888888999999999999999998555567899999999999999
Q ss_pred cccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccc
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGP 159 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 159 (353)
.+....+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .++...+..+++|+.+++.+|.+...
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 998766667889999999999999999 78888999999999999999998 55555555799999999999988643
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=128.08 Aligned_cols=153 Identities=21% Similarity=0.259 Sum_probs=131.8
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCC-cccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVP-GKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
++++++++.++. +|..+ .+.+++|++++|.+....+ ..|.++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 578999999884 56544 3567999999999987644 5588999999999999999866667899999999999999
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccc
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTG 158 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 158 (353)
|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+. .+++|+.+++++|.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD-TLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT-TCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc-CCCCCCEEEecCcCCcC
Confidence 999977777899999999999999999977788899999999999999999844455554 79999999999998864
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1e-16 Score=139.73 Aligned_cols=156 Identities=24% Similarity=0.239 Sum_probs=132.3
Q ss_pred CcEEEccCCCCccccCcccc-cCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecC
Q 047624 1 LRILWLDNNTYGGQIPDNIS-HCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAA 79 (353)
Q Consensus 1 L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (353)
++.|+|++|.+++..+..+. .+++|++|++++|.+..+.+..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 57899999999987777787 99999999999999998888889999999999999999986666689999999999999
Q ss_pred CCcccccChhhhhccccccEEEeCCCcCCCCCchhh---cCCCCCCEEEcCCCCCCCCCCccccCCCCC--CCEEeccCc
Q 047624 80 ANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSI---YNLSSLSNFDFPVNQLQGGLPTDLGFTLPN--LERLNVGDN 154 (353)
Q Consensus 80 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~~ 154 (353)
+|.+....+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+. .++......++. ++.+++.+|
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCC
Confidence 999997778889999999999999999984433344 56899999999999997 555433334555 478999998
Q ss_pred ccc
Q 047624 155 QFT 157 (353)
Q Consensus 155 ~~~ 157 (353)
.+.
T Consensus 200 ~~~ 202 (361)
T 2xot_A 200 PLE 202 (361)
T ss_dssp CEE
T ss_pred Ccc
Confidence 875
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=4.6e-17 Score=135.35 Aligned_cols=169 Identities=19% Similarity=0.250 Sum_probs=133.8
Q ss_pred CCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCc
Q 047624 144 PNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGL 223 (353)
Q Consensus 144 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L 223 (353)
.++..+++.++.+.+. + .+..+++|++|++++|.+.... .+..+++|+.|++++|.+.+.. .+..+++|
T Consensus 19 ~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~--------~l~~l~~L 87 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLS--------PLKDLTKL 87 (263)
T ss_dssp HHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG--------GGTTCSSC
T ss_pred HHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCCh--------hhccCCCC
Confidence 3466677777777633 3 4677899999999999888654 6888899999999999886532 16788899
Q ss_pred cEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCCCCCCCCcEEEeeccc
Q 047624 224 ELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPGRNLTSLAILVFVENM 303 (353)
Q Consensus 224 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~ 303 (353)
+.|++++|.+.+. +.. .. ++|++|++++|.+++ . ..+..+++|++|++++|.+.+......+++|+.|++++|+
T Consensus 88 ~~L~L~~N~l~~l-~~~-~~--~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 88 EELSVNRNRLKNL-NGI-PS--ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CEEECCSSCCSCC-TTC-CC--SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSC
T ss_pred CEEECCCCccCCc-Ccc-cc--CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCc
Confidence 9999999988753 322 22 489999999999874 3 3588899999999999998877666778899999999999
Q ss_pred ccccCChhhhcCCCCcEEecCCCcCCCC
Q 047624 304 LEGSIPSSLGKCQNLILLDLSNNNLSGT 331 (353)
Q Consensus 304 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 331 (353)
+.+. ..+..+++|+.|++++|++++.
T Consensus 162 i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred Ccch--HHhccCCCCCEEeCCCCcccCC
Confidence 8865 6688889999999999998854
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=2.3e-16 Score=131.18 Aligned_cols=169 Identities=20% Similarity=0.284 Sum_probs=90.3
Q ss_pred CCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEE
Q 047624 22 CVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIG 101 (353)
Q Consensus 22 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 101 (353)
+.+++.++++++.+.+.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+ .+. +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEE
Confidence 334444455555544322 2445555566666655554 333 45555566666666555553 222 55555666666
Q ss_pred eCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcce
Q 047624 102 FGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFS 181 (353)
Q Consensus 102 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 181 (353)
+++|.+.+ ++.. .. ++|+.|++++|.+. .++ .+. .+++|+.|++++|.+.+. + .+..+++|++|++++|.++
T Consensus 92 L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~-~~~-~l~-~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 92 VNRNRLKN-LNGI-PS-ACLSRLFLDNNELR-DTD-SLI-HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSSCCSC-CTTC-CC-SSCCEEECCSSCCS-BSG-GGT-TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred CCCCccCC-cCcc-cc-CcccEEEccCCccC-CCh-hhc-CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 66665552 2221 12 55666666666654 222 222 456666666666666532 2 4555666666666666666
Q ss_pred eeCCCcccccCccEEEEeeccCCC
Q 047624 182 GKVPSLENLHKLQWVVIAVNHLGN 205 (353)
Q Consensus 182 ~~~~~~~~~~~L~~l~l~~~~~~~ 205 (353)
+. ..+..+++|+.+++++|.+..
T Consensus 164 ~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred ch-HHhccCCCCCEEeCCCCcccC
Confidence 55 445666666666666665543
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=6e-16 Score=119.70 Aligned_cols=133 Identities=20% Similarity=0.260 Sum_probs=101.3
Q ss_pred CCCCcEEEcccCccc-ccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEE
Q 047624 22 CVNLESLFLAHNELV-GKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFI 100 (353)
Q Consensus 22 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 100 (353)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 377888888888876 45566677888888888888887743 677888888888888888876577777778888888
Q ss_pred EeCCCcCCCCC-chhhcCCCCCCEEEcCCCCCCCCCCc---cccCCCCCCCEEeccCcccc
Q 047624 101 GFGANKLSGEI-PSSIYNLSSLSNFDFPVNQLQGGLPT---DLGFTLPNLERLNVGDNQFT 157 (353)
Q Consensus 101 ~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 157 (353)
++++|.+.... +..+..+++|++|++++|.+. ..+. .....+++|+.|++++|...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888887432 256778888888888888887 4444 23346888888888888765
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=8.5e-16 Score=116.34 Aligned_cols=128 Identities=18% Similarity=0.261 Sum_probs=92.8
Q ss_pred CCCCcEEEcccCccc-ccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEE
Q 047624 22 CVNLESLFLAHNELV-GKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFI 100 (353)
Q Consensus 22 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 100 (353)
.+++++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367888888888776 45566677788888888888877643 667778888888888888876567777778888888
Q ss_pred EeCCCcCCCC-CchhhcCCCCCCEEEcCCCCCCCCCCc---cccCCCCCCCEEecc
Q 047624 101 GFGANKLSGE-IPSSIYNLSSLSNFDFPVNQLQGGLPT---DLGFTLPNLERLNVG 152 (353)
Q Consensus 101 ~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~ 152 (353)
++++|.+.+. .+..+..+++|++|++++|.+. ..+. .....+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 8888887742 2366777888888888888776 3333 233367788887765
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=3.8e-15 Score=117.68 Aligned_cols=128 Identities=23% Similarity=0.357 Sum_probs=81.7
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCc-ccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPG-KLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
++++++++.++ .+|..+. +++++|++++|.+....+. .+.++++|++|++++|.+.+..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45667777665 3444332 2677777777766654443 366677777777777776655566677777777777777
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCC
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQ 132 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 132 (353)
|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7666555555666666677777666666555556666666666666666654
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=7.1e-15 Score=126.47 Aligned_cols=286 Identities=10% Similarity=0.039 Sum_probs=181.7
Q ss_pred CCCccEEEecCCccCCccCccccC-CCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcC-------
Q 047624 46 LSKLRTLAVHHNNLSGEIPSSFGN-LSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYN------- 117 (353)
Q Consensus 46 l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~------- 117 (353)
+.++++|.+++.--. .-...+.. +++|++|++++|.+... ...-+.++.++......+.+. ...|..
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEE
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEe-cCccccccccccccccccccC---HHHhccccccccc
Confidence 567888888864211 11122333 78899999999887610 001112222344444444332 234566
Q ss_pred -CCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcc----eee-CCCccccc
Q 047624 118 -LSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGF----SGK-VPSLENLH 191 (353)
Q Consensus 118 -l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~~-~~~~~~~~ 191 (353)
+++|+.+++.. .+. .++...+..+++|+.+++.++.+....+..+..+.++..+....... ... ...+..+.
T Consensus 99 g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp ECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred ccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88899998888 665 66666666888999999988877655566676676676666555321 111 11244555
Q ss_pred Ccc-EEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCC
Q 047624 192 KLQ-WVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLV 270 (353)
Q Consensus 192 ~L~-~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 270 (353)
.++ .+.+.... .........-....++..+.+.+.-.. .....+....++|+++++++|.++.....+|.+|+
T Consensus 177 ~L~~~i~~~~~~-----~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~ 250 (329)
T 3sb4_A 177 PLETTIQVGAMG-----KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK 250 (329)
T ss_dssp CCEEEEEECTTC-----CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred ccceeEEecCCC-----cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence 665 33332211 011112222234456666666554221 11222333346999999999988755567899999
Q ss_pred CCcEEecCCceeeeecC--CCCCCCCc-EEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEe
Q 047624 271 NLELLELGDNQFTGRIP--GRNLTSLA-ILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLD 347 (353)
Q Consensus 271 ~L~~L~l~~n~~~~~~~--~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~ 347 (353)
+|+.+++.+| +..... ...+++|+ .+.+.+ .+....+.+|.+|++|+.+++++|.++...+.+|.++++| +++.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L-~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS-KLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC-CEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch-hhhc
Confidence 9999999998 443332 36788999 999988 6765667899999999999999999997777899999999 7875
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=5e-18 Score=155.89 Aligned_cols=198 Identities=17% Similarity=0.174 Sum_probs=150.6
Q ss_pred ccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCc-------------cCCccCccccCCCcccEee-cCCCcccc
Q 047624 20 SHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNN-------------LSGEIPSSFGNLSSLERLS-AAANQFVG 85 (353)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 85 (353)
..+++|+.|+++++.+. .+|..+.++++|++|+++++. ..+..|..+..+++|+.|+ +..+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 56789999999999887 567888889999999987653 3446667788888888888 55554321
Q ss_pred cChh------hhhc--cccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccc
Q 047624 86 QIPE------TLGE--LKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFT 157 (353)
Q Consensus 86 ~~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 157 (353)
++. .+.. ...|+.|++++|.++ .+|. +..+++|+.|++++|.+. .+|..+. .+++|+.|++++|.++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhh-cCCCCCEEECCCCCCC
Confidence 111 1111 236889999999998 4665 888999999999999988 7887666 7899999999999988
Q ss_pred ccccccccCCCCccEEecCCCcceee--CCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEc
Q 047624 158 GPIPASISNASNLMRLTIPQNGFSGK--VPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEI 228 (353)
Q Consensus 158 ~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 228 (353)
. +| .+..+++|++|++++|.+++. +..+..+++|+.|++++|.+.+.+... ......+++|+.|++
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~---~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ---ERLAEMLPSVSSILT 567 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT---THHHHHCTTCSEEEC
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH---HHHHHHCcccCccCC
Confidence 4 56 788899999999999999887 456889999999999999887654321 123344677887753
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=3.5e-15 Score=117.94 Aligned_cols=108 Identities=24% Similarity=0.364 Sum_probs=59.6
Q ss_pred CccEEEccCCcCCccCch-hHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEE
Q 047624 222 GLELLEINTNNFGGMLPE-AVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILV 298 (353)
Q Consensus 222 ~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~ 298 (353)
.+++|++++|.+.+..+. .+..+ ++|++|++++|.+++..|.++.++++|++|++++|.+.+..+. ..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccC-CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 556666666655533332 23344 2566666666665544455555666666666666665554442 3455566666
Q ss_pred eecccccccCChhhhcCCCCcEEecCCCcCCC
Q 047624 299 FVENMLEGSIPSSLGKCQNLILLDLSNNNLSG 330 (353)
Q Consensus 299 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 330 (353)
+++|++.+..|..+..+++|+.|++++|++.+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 66655555555555555556666666655553
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=9.1e-15 Score=113.02 Aligned_cols=136 Identities=17% Similarity=0.193 Sum_probs=103.4
Q ss_pred CCCccEEEecCCccC-CccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEE
Q 047624 46 LSKLRTLAVHHNNLS-GEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNF 124 (353)
Q Consensus 46 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 124 (353)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|+.|++++|.+....+..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467888888888876 56777778888888888888887743 667788888888888888886577777778888888
Q ss_pred EcCCCCCCCCCCc-cccCCCCCCCEEeccCcccccccc---ccccCCCCccEEecCCCcceeeC
Q 047624 125 DFPVNQLQGGLPT-DLGFTLPNLERLNVGDNQFTGPIP---ASISNASNLMRLTIPQNGFSGKV 184 (353)
Q Consensus 125 ~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~ 184 (353)
++++|.+. .++. .....+++|+.|++++|.+....+ ..+..+++|++|++++|.....+
T Consensus 101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 88888886 4331 223368888888888888874333 25777888888888888776544
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=114.84 Aligned_cols=124 Identities=26% Similarity=0.363 Sum_probs=91.3
Q ss_pred cEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecC--CCCCCCCcEEEeec
Q 047624 224 ELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIP--GRNLTSLAILVFVE 301 (353)
Q Consensus 224 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~ 301 (353)
+.++++++.+. .+|.. +++++++|++++|.++ .+|..+.++++|++|++++|.+.+..+ ...+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~---~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKG---IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSC---CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCC---CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666655 34432 2347888888888876 666778888888888888888776554 25677888888888
Q ss_pred ccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 302 NMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 302 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
|.+....+..|..+++|+.|++++|.++...+..|..+++| ++|++++|++
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL-SHLAIGANPL 138 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC-CEEECCSSCE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc-cEEEeCCCCe
Confidence 88886666778888888888888888885555567788888 7888888764
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3e-14 Score=112.56 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=73.8
Q ss_pred cEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCC
Q 047624 26 ESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGAN 105 (353)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 105 (353)
+.++++++.+.. +|..+. ++|++|++++|.+. .+|..|..+++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 445555555542 233222 35666666666665 55556666666666666666665544555666666666666666
Q ss_pred cCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccc
Q 047624 106 KLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFT 157 (353)
Q Consensus 106 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 157 (353)
.+....+..+..+++|+.|++++|.+. .++...+..+++|+.+++.+|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 666444555666666666666666665 444433335666666666666554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=1e-14 Score=110.35 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=69.1
Q ss_pred CCccEEEecCCccC-CccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEE
Q 047624 47 SKLRTLAVHHNNLS-GEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFD 125 (353)
Q Consensus 47 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 125 (353)
++|++|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666554 44555555666666666666655532 4455566666666666666544555555556666666
Q ss_pred cCCCCCCCCCC--ccccCCCCCCCEEeccCcccccccc---ccccCCCCccEEecC
Q 047624 126 FPVNQLQGGLP--TDLGFTLPNLERLNVGDNQFTGPIP---ASISNASNLMRLTIP 176 (353)
Q Consensus 126 l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~ 176 (353)
+++|.+. .++ ..+. .+++|+.|++++|.+....+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~-~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIK-DLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCC-SHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCC-ChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666554 221 2222 45566666666665553322 234555666665554
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=4.5e-16 Score=142.92 Aligned_cols=200 Identities=22% Similarity=0.198 Sum_probs=148.9
Q ss_pred CCCCCCEEeccCccccccccccccCCCCccEEecCCCc-------------ceeeCC-CcccccCccEEE-EeeccCCCC
Q 047624 142 TLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNG-------------FSGKVP-SLENLHKLQWVV-IAVNHLGNG 206 (353)
Q Consensus 142 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~-~~~~~~~L~~l~-l~~~~~~~~ 206 (353)
..+.|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..+ .+..+++|+.|+ +..+.+...
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 5778999999999887 678889999999999987663 121111 245666677666 343322110
Q ss_pred Ccchh--HHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeee
Q 047624 207 EKDDL--EFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTG 284 (353)
Q Consensus 207 ~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 284 (353)
..... .....+ ....|+.|++++|.+++ +|. +..++ +|++|++++|.++ .+|..++.+++|++|++++|.+++
T Consensus 426 ~~l~l~~n~i~~l-~~~~L~~L~Ls~n~l~~-lp~-~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 426 RSKFLLENSVLKM-EYADVRVLHLAHKDLTV-LCH-LEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHH-HHTTCSEEECTTSCCSS-CCC-GGGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhccccccc-CccCceEEEecCCCCCC-CcC-ccccc-cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 00000 001111 12368999999999885 565 77774 9999999999998 889999999999999999999998
Q ss_pred ecCCCCCCCCcEEEeecccccccC-ChhhhcCCCCcEEecCCCcCCCCCCc---ccccccccceEEec
Q 047624 285 RIPGRNLTSLAILVFVENMLEGSI-PSSLGKCQNLILLDLSNNNLSGTIPT---EVIGLSSLSIYLDL 348 (353)
Q Consensus 285 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~l~~l~~~l~l 348 (353)
......+++|+.|++++|.+.+.. |..+..+++|+.|++++|++++..|. .+..+|+| +.||+
T Consensus 501 lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L-~~L~l 567 (567)
T 1dce_A 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV-SSILT 567 (567)
T ss_dssp CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC-SEEEC
T ss_pred CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc-CccCC
Confidence 665578999999999999999766 89999999999999999999966553 23348899 78875
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=3.6e-14 Score=122.07 Aligned_cols=217 Identities=12% Similarity=0.099 Sum_probs=135.2
Q ss_pred CcEEEccCCCCc--------------------cccCccccc--------CCCCcEEEcccCcccccCCcccCCCCCccEE
Q 047624 1 LRILWLDNNTYG--------------------GQIPDNISH--------CVNLESLFLAHNELVGKVPGKLGSLSKLRTL 52 (353)
Q Consensus 1 L~~L~l~~~~~~--------------------~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 52 (353)
|++|||++|++. ......|.. |++|+.+++.. .+..+.+.+|.++++|+.+
T Consensus 51 L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l 129 (329)
T 3sb4_A 51 LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKIC 129 (329)
T ss_dssp CCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEE
T ss_pred CeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceE
Confidence 678999999877 223346667 88888888887 6766777788888888888
Q ss_pred EecCCccCCccCccccCCCcccEeecCCCccc----ccChhhhhcccccc--------------------------EEEe
Q 047624 53 AVHHNNLSGEIPSSFGNLSSLERLSAAANQFV----GQIPETLGELKRMR--------------------------FIGF 102 (353)
Q Consensus 53 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~--------------------------~L~l 102 (353)
++.++.+....+.+|..+.++..+........ ......+..+..|+ .+.+
T Consensus 130 ~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~ 209 (329)
T 3sb4_A 130 QIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTI 209 (329)
T ss_dssp EBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEE
T ss_pred EcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEE
Confidence 88888776556667777777777665542210 00111122223332 2222
Q ss_pred CCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCcc-EEecCCCcce
Q 047624 103 GANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLM-RLTIPQNGFS 181 (353)
Q Consensus 103 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~ 181 (353)
.+.-...........+++|+.++++.|.+. .++...+..+.+|+.+++.++ +...-...+..+++|+ .+.+.+ .++
T Consensus 210 ~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 210 EGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp EECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred eeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence 221110000000112678888888887776 666666667888888888776 5444455677788888 888877 555
Q ss_pred eeCC-CcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEE
Q 047624 182 GKVP-SLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLE 227 (353)
Q Consensus 182 ~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 227 (353)
.+.. .+..+++|+.+.+..+.+...+ ..++.++++|+.+.
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~------~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITTLG------DELFGNGVPSKLIY 327 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCEEC------TTTTCTTCCCCEEE
T ss_pred EEchhhhhCCccCCEEEeCCCccCccc------hhhhcCCcchhhhc
Confidence 5543 3778888888888666654322 23556677777664
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=9.1e-14 Score=108.33 Aligned_cols=110 Identities=22% Similarity=0.308 Sum_probs=55.9
Q ss_pred CCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEc
Q 047624 47 SKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDF 126 (353)
Q Consensus 47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 126 (353)
++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34555555555554333334445555555555555554333333455555555555555555333334455555666666
Q ss_pred CCCCCCCCCCccccCCCCCCCEEeccCcccc
Q 047624 127 PVNQLQGGLPTDLGFTLPNLERLNVGDNQFT 157 (353)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 157 (353)
++|.+. .++...+..+++|+.+++++|.+.
T Consensus 108 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 655555 344433334556666666666554
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=5.8e-14 Score=109.46 Aligned_cols=105 Identities=28% Similarity=0.242 Sum_probs=49.9
Q ss_pred cCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEeecccccccCChhhhcCCCCcEEecC
Q 047624 247 RIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLS 324 (353)
Q Consensus 247 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 324 (353)
++++|++++|.+.+..+..+..+++|++|++++|.+.+..+. ..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 455555555554433333344455555555555554433321 334455555555555543333344455555555555
Q ss_pred CCcCCCCCCcccccccccceEEecCCCC
Q 047624 325 NNNLSGTIPTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 325 ~n~~~~~~~~~~~~l~~l~~~l~l~~~~ 352 (353)
+|++++..+..+..++++ ++|++++|+
T Consensus 109 ~N~l~~~~~~~~~~l~~L-~~L~l~~N~ 135 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSL-QKIWLHTNP 135 (177)
T ss_dssp SSCCSCCCTTTTTTCTTC-CEEECCSSC
T ss_pred CCcceEeCHHHhcCCccc-CEEEecCCC
Confidence 555553333334445555 455555554
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.6e-14 Score=112.52 Aligned_cols=129 Identities=16% Similarity=0.211 Sum_probs=99.7
Q ss_pred hcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCC
Q 047624 217 LVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSL 294 (353)
Q Consensus 217 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L 294 (353)
+..+++++.|++++|.+.. ++. +....++|++|++++|.+++. ..+..+++|++|++++|.+.+..+. ..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3456678888888887763 333 444434899999999988743 5678888999999999988866543 567899
Q ss_pred cEEEeecccccccCCh--hhhcCCCCcEEecCCCcCCCCCCcc----cccccccceEEecCCCC
Q 047624 295 AILVFVENMLEGSIPS--SLGKCQNLILLDLSNNNLSGTIPTE----VIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 295 ~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~----~~~l~~l~~~l~l~~~~ 352 (353)
+.|++++|.+. .+|. .+..+++|+.|++++|+++ .+|.. +..+++| ++||+++|.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L-~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV-RVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC-SEETTEECC
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc-ceeCCCcCC
Confidence 99999999886 4555 7888999999999999998 55664 8889999 899998875
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=1.2e-12 Score=115.37 Aligned_cols=156 Identities=10% Similarity=0.005 Sum_probs=77.3
Q ss_pred ccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhc
Q 047624 14 QIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGE 93 (353)
Q Consensus 14 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 93 (353)
.....|..|.+|+++.+..+ +..+...+|.++.+|+.+++..+ +...-..+|..+.+|+.+.+..+ +.......|..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 34456778888888888643 55566677888888888888754 33233456777777777665433 11122223333
Q ss_pred cccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEE
Q 047624 94 LKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRL 173 (353)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 173 (353)
+..++...... ........|..+.+|+.+.+..+.. .++...+..+.+|+.+.+..+ +.......+..++.|+.+
T Consensus 139 ~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 139 CDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred ccccccccCcc--ccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 32222111111 1111223445555555555544321 233333334555555555433 221222334444555544
Q ss_pred ecCC
Q 047624 174 TIPQ 177 (353)
Q Consensus 174 ~l~~ 177 (353)
.+..
T Consensus 214 ~~~~ 217 (394)
T 4fs7_A 214 EFPN 217 (394)
T ss_dssp CCCT
T ss_pred ecCC
Confidence 4443
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=7.7e-15 Score=138.88 Aligned_cols=174 Identities=18% Similarity=0.217 Sum_probs=103.5
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcc-----cCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEe
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLA-----HNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERL 76 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~-----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 76 (353)
+.|+|.++.+.. .+..+....+|+.+.+. .+.+. ..++.+..++.|++|++++|.+. .+|..+..+++|++|
T Consensus 176 ~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 176 PKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRL 252 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCC
T ss_pred ceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEE
Confidence 346666666664 33333333334443332 23333 45677788888999999998887 677777788899999
Q ss_pred ecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccc
Q 047624 77 SAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQF 156 (353)
Q Consensus 77 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 156 (353)
++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|+.|++++|.+
T Consensus 253 ~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~-~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 253 YLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFG-NLCNLQFLGVEGNPL 328 (727)
T ss_dssp BCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTT-SCTTCCCEECTTSCC
T ss_pred EeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhh-cCCCccEEeCCCCcc
Confidence 99999888 67888888899999999999888 77888888889999999998886 7777755 788899999998888
Q ss_pred cccccccccCCC-CccEEecCCCccee
Q 047624 157 TGPIPASISNAS-NLMRLTIPQNGFSG 182 (353)
Q Consensus 157 ~~~~~~~l~~~~-~L~~L~l~~~~~~~ 182 (353)
....+..+.... ....+++++|.++.
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCChHHHhhcchhhhHHhhccCcccC
Confidence 765555543321 11224556665544
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=9.2e-14 Score=108.18 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=108.3
Q ss_pred ccccCCCCcEEEcccCcccccCCcccCCCC-CccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhcccc
Q 047624 18 NISHCVNLESLFLAHNELVGKVPGKLGSLS-KLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKR 96 (353)
Q Consensus 18 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 96 (353)
.+..+.+|++|++++|.+..+ +. +..+. +|++|++++|.+.+ + ..+..+++|++|++++|.+....+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 466788999999999988744 44 44444 99999999999874 4 67889999999999999998654455688999
Q ss_pred ccEEEeCCCcCCCCCch--hhcCCCCCCEEEcCCCCCCCCCCcc---ccCCCCCCCEEeccCcccc
Q 047624 97 MRFIGFGANKLSGEIPS--SIYNLSSLSNFDFPVNQLQGGLPTD---LGFTLPNLERLNVGDNQFT 157 (353)
Q Consensus 97 L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~ 157 (353)
|+.|++++|.+. .++. .+..+++|+.|++++|.+. ..+.. ....+++|+.++++++...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999997 5555 7888999999999999987 55553 2337899999999988765
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=1.9e-12 Score=114.19 Aligned_cols=318 Identities=12% Similarity=0.065 Sum_probs=198.2
Q ss_pred cEEEccCCCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 2 RILWLDNNTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 2 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
+.+.+.. .++......|.+|.+|+.+++..+ +..+...+|.++..|+.+.+..+ +...-..+|..+..++.......
T Consensus 74 ~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~ 150 (394)
T 4fs7_A 74 TEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGV 150 (394)
T ss_dssp EEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTC
T ss_pred eEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccc
Confidence 4555543 355555678999999999999765 55466778899999998877654 22234456666654444333332
Q ss_pred cccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccc
Q 047624 82 QFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIP 161 (353)
Q Consensus 82 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 161 (353)
.. ....+|..+++|+.+.+..+... .....+..+.+|+.+.+..+ +. .+....+..+..|+.+.+.++... +.
T Consensus 151 ~~--i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~ 223 (394)
T 4fs7_A 151 TV--IGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LG 223 (394)
T ss_dssp CE--ECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--EC
T ss_pred cc--cchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--ee
Confidence 22 23456888889999988765432 44556778888888888765 22 455555557778888877655432 33
Q ss_pred ccccCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhH
Q 047624 162 ASISNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAV 241 (353)
Q Consensus 162 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 241 (353)
.......+|+.+.+......-....+..+..++.+.+..+...- ....+..+..++.+......+.. ..+
T Consensus 224 ~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i-------~~~~F~~~~~l~~~~~~~~~i~~---~~F 293 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRI-------GGSLFYNCSGLKKVIYGSVIVPE---KTF 293 (394)
T ss_dssp TTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEE-------CSCTTTTCTTCCEEEECSSEECT---TTT
T ss_pred hhhcccCCCceEEECCCceecccccccccccceeEEcCCCccee-------eccccccccccceeccCceeecc---ccc
Confidence 34445677888888664332222336777888888776543210 11244556667776665443221 122
Q ss_pred hhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceee--eecCCCCCCCCcEEEeecccccccCChhhhcCCCCc
Q 047624 242 GNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFT--GRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLI 319 (353)
Q Consensus 242 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 319 (353)
... .+|+.+.+..+ +...-..+|.+|++|+.+++..+ ++ +......+.+|+.+.+..+ +......+|.+|++|+
T Consensus 294 ~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 294 YGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 333 47888888754 33233467888888888888754 32 2223366778888888665 5544556788888888
Q ss_pred EEecCCCcCCCCCCcccccccccceEE
Q 047624 320 LLDLSNNNLSGTIPTEVIGLSSLSIYL 346 (353)
Q Consensus 320 ~l~l~~n~~~~~~~~~~~~l~~l~~~l 346 (353)
.+++..+ ++ .+..+|..+.+| +++
T Consensus 370 ~i~lp~~-~~-~~~~~F~~c~~L-~~I 393 (394)
T 4fs7_A 370 KVELPKR-LE-QYRYDFEDTTKF-KWI 393 (394)
T ss_dssp EEEEEGG-GG-GGGGGBCTTCEE-EEE
T ss_pred EEEECCC-CE-EhhheecCCCCC-cEE
Confidence 8888654 22 334577777777 664
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=1.9e-14 Score=136.24 Aligned_cols=156 Identities=23% Similarity=0.230 Sum_probs=81.1
Q ss_pred CCCcEEEcccCcccccCCcccCCCCCccEEEec-----CCccCCccCccccCCCcccEeecCCCcccccChhhhhccccc
Q 047624 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVH-----HNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRM 97 (353)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~-----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 97 (353)
+.++.|++.++.+.. .+..+.....|+.+.+. .+.+. ..+..+..++.|+.|++++|.+. .++..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 456777776666553 23333233333333322 22222 44566777777778887777776 455556677777
Q ss_pred cEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCC
Q 047624 98 RFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQ 177 (353)
Q Consensus 98 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 177 (353)
+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+. .+|..+..+++|++|++++
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 77777777777 66777777777777777777776 6666655 5777777777777775 5566677777777777777
Q ss_pred CcceeeCC
Q 047624 178 NGFSGKVP 185 (353)
Q Consensus 178 ~~~~~~~~ 185 (353)
|.+++..+
T Consensus 326 N~l~~~~p 333 (727)
T 4b8c_D 326 NPLEKQFL 333 (727)
T ss_dssp SCCCSHHH
T ss_pred CccCCCCh
Confidence 77765443
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=2.7e-12 Score=112.83 Aligned_cols=253 Identities=11% Similarity=0.063 Sum_probs=179.3
Q ss_pred CccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhh
Q 047624 11 YGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPET 90 (353)
Q Consensus 11 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 90 (353)
++......|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+...-..+|..+++|+.+.+..+.+.......
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence 343445567775 7999998766 555667778775 699999986 455455678999999999999988887555555
Q ss_pred hhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCc
Q 047624 91 LGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNL 170 (353)
Q Consensus 91 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 170 (353)
|. ..+|+.+.+..+ +.......|..+++|+.+++..+ +. .+....+.. .+|+.+.+.+ .+...-...+..+++|
T Consensus 200 F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L 273 (401)
T 4fdw_A 200 FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPEL 273 (401)
T ss_dssp TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTC
T ss_pred Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCC
Confidence 65 588999999854 55455667888899999999874 33 555555544 7899999854 3444455678889999
Q ss_pred cEEecCCCcce-----eeC-CCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhh
Q 047624 171 MRLTIPQNGFS-----GKV-PSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNL 244 (353)
Q Consensus 171 ~~L~l~~~~~~-----~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 244 (353)
+.+.+.++... .+. ..+..|++|+.+.+..+ +...+ ..++..|++|+.+.+..+ +......+|...
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~------~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~ 345 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILG------QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT 345 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEEC------TTTTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEh------hhhhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence 99999887654 233 33888999999988742 32211 236678889999999654 443334444443
Q ss_pred cccCcEEEecCccccCCCchhhcCCC-CCcEEecCCceee
Q 047624 245 STRIRILRVGNNQLFGNIPSELRNLV-NLELLELGDNQFT 283 (353)
Q Consensus 245 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~ 283 (353)
+|+.+.+.++.........+.+++ .+..+++..+...
T Consensus 346 --~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 346 --GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp --CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred --CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 899999999887655556777774 7889988876543
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=5.4e-12 Score=110.93 Aligned_cols=269 Identities=9% Similarity=0.108 Sum_probs=191.1
Q ss_pred ccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccE
Q 047624 20 SHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRF 99 (353)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 99 (353)
..+..++.+.+... +..+...+|.++ +|+.+.+..+ +...-..+|..+ +|+.+.+.. .+.......|..+++|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34578888888654 455667778876 7999999876 553555677774 799999986 455456678999999999
Q ss_pred EEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCc
Q 047624 100 IGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNG 179 (353)
Q Consensus 100 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 179 (353)
+.++.+.+.......|. ..+|+.+.+..+ +. .++...+..+++|+.+.+.++ +...-...+.. .+|+.+.+.+ .
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~ 258 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G 258 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence 99999988844444555 589999999854 44 666666668999999999875 33233344444 7899999955 4
Q ss_pred ceeeCC-CcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccc
Q 047624 180 FSGKVP-SLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQL 258 (353)
Q Consensus 180 ~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 258 (353)
+..+.. .+..+++|+.+.+..+......... --..++..|++|+.+.+.. .+......+|... .+|+.+.+..+ +
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~-I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c-~~L~~l~lp~~-l 334 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAM-IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN-RKVTQLTIPAN-V 334 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCE-ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC-CSCCEEEECTT-C
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccE-ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC-CCccEEEECcc-c
Confidence 555543 4899999999999877654211111 1134678899999999984 3554444555555 49999999765 4
Q ss_pred cCCCchhhcCCCCCcEEecCCceeeeecCC--CCC-CCCcEEEeecccc
Q 047624 259 FGNIPSELRNLVNLELLELGDNQFTGRIPG--RNL-TSLAILVFVENML 304 (353)
Q Consensus 259 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~-~~L~~L~l~~~~~ 304 (353)
......+|.++ +|+.+++.+|........ ..+ ..++.+.+-.+.+
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 43456788999 999999999976543332 223 4788998877654
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=7.4e-16 Score=122.55 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=99.2
Q ss_pred CCCCccEEecCCCcceeeCC-------CcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCc
Q 047624 166 NASNLMRLTIPQNGFSGKVP-------SLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLP 238 (353)
Q Consensus 166 ~~~~L~~L~l~~~~~~~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 238 (353)
..+.++.++++++.+.+..+ .+..+++|+.|+++.|.+.+.+ .+..+++|+.|++++|.+. .+|
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--------~~~~l~~L~~L~l~~n~l~-~l~ 86 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--------SLSGMENLRILSLGRNLIK-KIE 86 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--------CHHHHTTCCEEEEEEEEEC-SCS
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--------ccccCCCCCEEECCCCCcc-ccc
Confidence 34455555555555544333 4667778888888887776521 4556677888888888776 456
Q ss_pred hhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecC---CCCCCCCcEEEeecccccccCCh-----
Q 047624 239 EAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIP---GRNLTSLAILVFVENMLEGSIPS----- 310 (353)
Q Consensus 239 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~----- 310 (353)
..+..++ +|++|++++|.+++ +| .+..+++|++|++++|.+.+... ...+++|+.|++++|++.+..|.
T Consensus 87 ~~~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 87 NLDAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp SHHHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred chhhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchH
Confidence 5555553 78888888887763 44 57777888888888887775332 35677777888877777654433
Q ss_pred -----hhhcCCCCcEEecCCCcCCC
Q 047624 311 -----SLGKCQNLILLDLSNNNLSG 330 (353)
Q Consensus 311 -----~~~~~~~L~~l~l~~n~~~~ 330 (353)
.+..+++|+.|+ +++++.
T Consensus 164 ~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHHHhCCCcEEEC--CcccCH
Confidence 266777777765 666653
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.6e-12 Score=100.34 Aligned_cols=106 Identities=23% Similarity=0.284 Sum_probs=83.7
Q ss_pred CccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEe
Q 047624 222 GLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVF 299 (353)
Q Consensus 222 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l 299 (353)
..+.++++++.+. .+|..+ ++++++|++++|.+++..+..+.++++|++|++++|.+.+..+. ..+++|+.|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4578888888877 355433 35889999999998876678888899999999999988866553 56788888898
Q ss_pred ecccccccCChhhhcCCCCcEEecCCCcCCCC
Q 047624 300 VENMLEGSIPSSLGKCQNLILLDLSNNNLSGT 331 (353)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 331 (353)
++|.+.+..+..|..+++|+.|++++|++...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88888865556688888888899988888843
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.9e-12 Score=98.89 Aligned_cols=104 Identities=20% Similarity=0.261 Sum_probs=51.7
Q ss_pred cEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCC
Q 047624 26 ESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGAN 105 (353)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 105 (353)
+.++++++.+.. +|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 445555554442 22222 145555555555555444444555555555555555555433334455555555555555
Q ss_pred cCCCCCchhhcCCCCCCEEEcCCCCCC
Q 047624 106 KLSGEIPSSIYNLSSLSNFDFPVNQLQ 132 (353)
Q Consensus 106 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 132 (353)
.+....+..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 555333334555555555555555543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=4.8e-15 Score=117.81 Aligned_cols=110 Identities=22% Similarity=0.262 Sum_probs=58.4
Q ss_pred ccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCC
Q 047624 42 KLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSL 121 (353)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 121 (353)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ ++ .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 45556666666666665552 44 5555666666666666555 344455555666666666666552 33 34455555
Q ss_pred CEEEcCCCCCCCCCCc-cccCCCCCCCEEeccCcccc
Q 047624 122 SNFDFPVNQLQGGLPT-DLGFTLPNLERLNVGDNQFT 157 (353)
Q Consensus 122 ~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 157 (353)
++|++++|.+. .++. .....+++|+++++++|.+.
T Consensus 118 ~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 118 RVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccc
Confidence 55555555554 2221 11124555555555555544
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=3.3e-12 Score=98.95 Aligned_cols=107 Identities=24% Similarity=0.284 Sum_probs=85.3
Q ss_pred ccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEee
Q 047624 223 LELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFV 300 (353)
Q Consensus 223 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~ 300 (353)
-+.++++++.+. .+|..+ +++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+. ..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 467888888875 555443 35899999999999877788889999999999999998876553 567899999999
Q ss_pred cccccccCChhhhcCCCCcEEecCCCcCCCCCCc
Q 047624 301 ENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPT 334 (353)
Q Consensus 301 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 334 (353)
+|++.+..+..|..+++|+.|++++|++. ..+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD-CECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence 99888555556888899999999999888 3443
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=5.7e-12 Score=97.59 Aligned_cols=104 Identities=18% Similarity=0.255 Sum_probs=67.6
Q ss_pred cEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCC
Q 047624 26 ESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGAN 105 (353)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 105 (353)
+.++++++.+.. +|..+. ++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 566666666653 343332 56777777777776555666777777777777777776544444567777777777777
Q ss_pred cCCCCCchhhcCCCCCCEEEcCCCCCC
Q 047624 106 KLSGEIPSSIYNLSSLSNFDFPVNQLQ 132 (353)
Q Consensus 106 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 132 (353)
.+....+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 776444444667777777777777664
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=7.9e-14 Score=121.43 Aligned_cols=167 Identities=20% Similarity=0.129 Sum_probs=118.7
Q ss_pred CCCccEEecCCCcceeeCCC-----cc-cccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchh
Q 047624 167 ASNLMRLTIPQNGFSGKVPS-----LE-NLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEA 240 (353)
Q Consensus 167 ~~~L~~L~l~~~~~~~~~~~-----~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 240 (353)
.+.+++|++++|.++..... +. ..++|+.|+++.|.+++. ........+++|+.|++++|.+++.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~-----~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA-----GLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH-----HHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH-----HHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 46799999999998753222 22 336899999999877531 12222334567899999999887654444
Q ss_pred Hhhh----cccCcEEEecCccccCC----CchhhcCCCCCcEEecCCceeeeecC------CCCCCCCcEEEeecccccc
Q 047624 241 VGNL----STRIRILRVGNNQLFGN----IPSELRNLVNLELLELGDNQFTGRIP------GRNLTSLAILVFVENMLEG 306 (353)
Q Consensus 241 ~~~~----~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l~~~~~~~ 306 (353)
+... .++|++|++++|.+++. ++.++..+++|++|++++|.+.+... ...+++|++|++++|.+++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 4322 25899999999998642 34556788999999999999875321 1455789999999999875
Q ss_pred c----CChhhhcCCCCcEEecCCCcCCCCCCccccc
Q 047624 307 S----IPSSLGKCQNLILLDLSNNNLSGTIPTEVIG 338 (353)
Q Consensus 307 ~----~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 338 (353)
. +...+..++.|+.|+|++|++++.....+..
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 3 3445667789999999999998654444443
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=2.8e-09 Score=93.86 Aligned_cols=315 Identities=10% Similarity=0.042 Sum_probs=170.7
Q ss_pred CcccccCC-CCcEEEcccCcccccCCcccCCCCCccEEEecCCc---cCCccCccccCCCcccEeecCCCcccccChhhh
Q 047624 16 PDNISHCV-NLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNN---LSGEIPSSFGNLSSLERLSAAANQFVGQIPETL 91 (353)
Q Consensus 16 ~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 91 (353)
...|..++ .|+.+.+..+ +..+-..+|.++.+|+.+.+..+. +...-..+|..+.+|+.+.+..+ +.......+
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34555664 4777777544 444566777888888888876653 33233456777777777666543 222334456
Q ss_pred hccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCcc
Q 047624 92 GELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLM 171 (353)
Q Consensus 92 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 171 (353)
..+.+|+.+.+.... .......+..+..|+.+.+..+- . .+....+ ....|+.+.+...... .....+..+.+++
T Consensus 134 ~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~~-~-~I~~~aF-~~~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDSV-T-AIEERAF-TGTALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTC-C-EECTTTT-TTCCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhccccccccccee-eeecccceeccccccccccccee-e-Eeccccc-cccceeEEEECCcccc-cccchhhhccccc
Confidence 777778777776533 22344456667777777776542 2 3333333 2356777776544322 3334455666676
Q ss_pred EEecCCCcceeeCCCcc--------------cccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccC
Q 047624 172 RLTIPQNGFSGKVPSLE--------------NLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGML 237 (353)
Q Consensus 172 ~L~l~~~~~~~~~~~~~--------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 237 (353)
...............+. ....+..+.+... +. .--..++..|..|+.+.+...... ..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~------~i~~~aF~~c~~L~~i~lp~~~~~-I~ 280 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA------RIETHAFDSCAYLASVKMPDSVVS-IG 280 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE------EECTTTTTTCSSCCEEECCTTCCE-EC
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCCc-ce------EcccceeeecccccEEecccccce-ec
Confidence 66555443322111110 0011111111100 00 001135567778888887544321 22
Q ss_pred chhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCce-eeeecCCCCCCCCcEEEeecccccccCChhhhcCC
Q 047624 238 PEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQ-FTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQ 316 (353)
Q Consensus 238 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 316 (353)
...+... +.|+.+.+... +...-..+|.+|.+|+.+++..+- ..+......+.+|+++.+-.+ ++.....+|.+|+
T Consensus 281 ~~aF~~c-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 281 TGAFMNC-PALQDIEFSSR-ITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred Ccccccc-cccccccCCCc-ccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 2334444 47888888643 332334678888889988887651 222333466788888888544 4444456788888
Q ss_pred CCcEEecCCCcCCCCCCcccccccccceEEecCCCC
Q 047624 317 NLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 317 ~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~ 352 (353)
+|+.+++.++.... .++.....| +.+.+..+.
T Consensus 358 ~L~~i~~~~~~~~~---~~~~~~~~L-~~i~i~~~~ 389 (394)
T 4gt6_A 358 ALNNIEYSGSRSQW---NAISTDSGL-QNLPVAPGS 389 (394)
T ss_dssp TCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECCceeeh---hhhhccCCC-CEEEeCCCC
Confidence 88888888774431 345566677 677776543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=3.4e-13 Score=117.40 Aligned_cols=184 Identities=16% Similarity=0.132 Sum_probs=124.2
Q ss_pred CCCCCEEeccCccccccccccc----c-CCCCccEEecCCCcceeeCC--CcccccCccEEEEeeccCCCCCcchhHHHh
Q 047624 143 LPNLERLNVGDNQFTGPIPASI----S-NASNLMRLTIPQNGFSGKVP--SLENLHKLQWVVIAVNHLGNGEKDDLEFVN 215 (353)
Q Consensus 143 ~~~L~~L~l~~~~~~~~~~~~l----~-~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 215 (353)
.+.++.+++++|.+.......+ . ..++|++|++++|.+.+... ....+++++.|+++.|.+++.... .+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~--~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK--DLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH--HHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH--HHHH
Confidence 4679999999998864322222 2 23689999999998865322 234567899999999987542211 2223
Q ss_pred hh-cccCCccEEEccCCcCCccC----chhHhhhcccCcEEEecCccccCC----CchhhcCCCCCcEEecCCceeeeec
Q 047624 216 SL-VNAYGLELLEINTNNFGGML----PEAVGNLSTRIRILRVGNNQLFGN----IPSELRNLVNLELLELGDNQFTGRI 286 (353)
Q Consensus 216 ~l-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~ 286 (353)
.+ ...+.|++|++++|.+++.. +..+... ++|++|++++|.+.+. ++.++..+++|++|++++|.+++..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN-TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTC-SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcC-CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 33 35688999999999887543 3333445 4899999999998743 3556777889999999999987543
Q ss_pred CC------CCCCCCcEEEeecccccccCChhhhcCCC-----CcEEe--cCCCcCC
Q 047624 287 PG------RNLTSLAILVFVENMLEGSIPSSLGKCQN-----LILLD--LSNNNLS 329 (353)
Q Consensus 287 ~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----L~~l~--l~~n~~~ 329 (353)
.. ...++|++|++++|.+.+.....+..+.. |+.+. +.++.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 21 34688999999999998665555544321 56665 5555554
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.15 E-value=3.4e-09 Score=93.30 Aligned_cols=297 Identities=9% Similarity=0.098 Sum_probs=180.2
Q ss_pred CccccCcccccCCCCcEEEcccCc---ccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccC
Q 047624 11 YGGQIPDNISHCVNLESLFLAHNE---LVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQI 87 (353)
Q Consensus 11 ~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 87 (353)
++......|.+|.+|+.+.+..+. +..+-..+|.++.+|+.+.+..+ +...-..+|..+.+|+.+.+.... ....
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~ 152 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVA 152 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEEC
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeec
Confidence 344455678899999999997653 55556778889999998887654 332445678889999999987543 2244
Q ss_pred hhhhhccccccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccccc----
Q 047624 88 PETLGELKRMRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPAS---- 163 (353)
Q Consensus 88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---- 163 (353)
...+..+..|+.+.+..+ +.......+.. ..|+.+.+..+.. .+....+..+..++........... ....
T Consensus 153 ~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~--~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~ 227 (394)
T 4gt6_A 153 DGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT--RIGTNAFSECFALSTITSDSESYPA-IDNVLYEK 227 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC--EECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEE
T ss_pred ccceecccccccccccce-eeEeccccccc-cceeEEEECCccc--ccccchhhhccccceeccccccccc-ccceeecc
Confidence 556788899999988764 33233334443 5788888765433 2333333356677776654433221 1111
Q ss_pred ----------ccCCCCccEEecCCCcceeeC-CCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCc
Q 047624 164 ----------ISNASNLMRLTIPQNGFSGKV-PSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNN 232 (353)
Q Consensus 164 ----------l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 232 (353)
......+..+.+... +.... ..+..+..|+.+.+...... --..++..++.|+.+.+.. .
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-------I~~~aF~~c~~L~~i~l~~-~ 298 (394)
T 4gt6_A 228 SANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-------IGTGAFMNCPALQDIEFSS-R 298 (394)
T ss_dssp CTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-------ECTTTTTTCTTCCEEECCT-T
T ss_pred cccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-------ecCcccccccccccccCCC-c
Confidence 111223444444432 23222 34788889998887543221 0123567788999999863 3
Q ss_pred CCccCchhHhhhcccCcEEEecCccccCCCchhhcCCCCCcEEecCCce-eeeecCCCCCCCCcEEEeecccccccCChh
Q 047624 233 FGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQ-FTGRIPGRNLTSLAILVFVENMLEGSIPSS 311 (353)
Q Consensus 233 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 311 (353)
+.......|... .+|+.+.+..+ ++..-..+|.+|.+|+.+.+..+- -.+......+.+|+.+.+.++.... .+
T Consensus 299 i~~I~~~aF~~c-~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~---~~ 373 (394)
T 4gt6_A 299 ITELPESVFAGC-ISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQW---NA 373 (394)
T ss_dssp CCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHH---HT
T ss_pred ccccCceeecCC-CCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeeh---hh
Confidence 332223344444 59999999865 332345689999999999997652 2233344788999999998875432 46
Q ss_pred hhcCCCCcEEecCCCcC
Q 047624 312 LGKCQNLILLDLSNNNL 328 (353)
Q Consensus 312 ~~~~~~L~~l~l~~n~~ 328 (353)
+..+..|+.+.+..+.+
T Consensus 374 ~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 374 ISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CBCCCCC----------
T ss_pred hhccCCCCEEEeCCCCE
Confidence 77788999988876543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=2.3e-10 Score=99.08 Aligned_cols=101 Identities=22% Similarity=0.135 Sum_probs=48.8
Q ss_pred EEEccCC-cCCccCchhHhhhcccCcEEEecC-ccccCCCchhhcCCCCCcEEecCCceeeeecCC--CCCCCCcEEEee
Q 047624 225 LLEINTN-NFGGMLPEAVGNLSTRIRILRVGN-NQLFGNIPSELRNLVNLELLELGDNQFTGRIPG--RNLTSLAILVFV 300 (353)
Q Consensus 225 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~ 300 (353)
.++++++ .+. .+|. +... ++|++|++++ |.+.+..+..|.++++|++|+|++|.+.+..+. ..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~-~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCC-CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3444444 343 3444 3333 2555666653 555533444555555555555555555544432 344555555555
Q ss_pred cccccccCChhhhcCCCCcEEecCCCcCC
Q 047624 301 ENMLEGSIPSSLGKCQNLILLDLSNNNLS 329 (353)
Q Consensus 301 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 329 (353)
+|++.+..+..+..++ |+.|++.+|++.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 5555432223333332 555555555554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=3.3e-10 Score=98.05 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=76.2
Q ss_pred EEEccCC-CCccccCcccccCCCCcEEEccc-CcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCC
Q 047624 3 ILWLDNN-TYGGQIPDNISHCVNLESLFLAH-NELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAA 80 (353)
Q Consensus 3 ~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (353)
.++.+++ .++ .+|. +..+++|+.|++++ |.+....+..|.++++|++|++++|.+.+..|..|..+++|++|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566776 666 3666 77778888888875 777766667788888888888888888766667778888888888888
Q ss_pred CcccccChhhhhccccccEEEeCCCcCCC
Q 047624 81 NQFVGQIPETLGELKRMRFIGFGANKLSG 109 (353)
Q Consensus 81 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 109 (353)
|.+....+..+..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 887754444455444 8888888877763
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.02 E-value=2e-10 Score=99.16 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=29.3
Q ss_pred CCCCcEEecCCceeeeec-----CCCCCCCCcEEEeecccccccC----ChhhhcCCCCcEEecCCCcCC
Q 047624 269 LVNLELLELGDNQFTGRI-----PGRNLTSLAILVFVENMLEGSI----PSSLGKCQNLILLDLSNNNLS 329 (353)
Q Consensus 269 ~~~L~~L~l~~n~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~ 329 (353)
+|+|++|++++|.+.+.. ....+++|++|+++.|.+.+.. +..+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 455555555555544211 1123455555555555554321 222234455555555555554
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.94 E-value=2.2e-07 Score=81.27 Aligned_cols=302 Identities=12% Similarity=0.078 Sum_probs=153.6
Q ss_pred cccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhcccc
Q 047624 17 DNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKR 96 (353)
Q Consensus 17 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 96 (353)
+++....+|+.+.+... ++.+...+|.++.+|+.+.+..+ +...-..+|..+ +|+.+.+..+ +.......|... +
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 35666778888888643 55566778889999999998754 443444567665 5776666443 222223344443 6
Q ss_pred ccEEEeCCCcCCCCCchhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccc------------cccccc
Q 047624 97 MRFIGFGANKLSGEIPSSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTG------------PIPASI 164 (353)
Q Consensus 97 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~l 164 (353)
|+.+.+..+... .....+.. .+++.+.+..+- . .+....+..+..++.+.+....... .....+
T Consensus 115 L~~i~lp~~~~~-i~~~~F~~-~~l~~~~~~~~v-~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 115 LDDFEFPGATTE-IGNYIFYN-SSVKRIVIPKSV-T-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CSEEECCTTCCE-ECTTTTTT-CCCCEEEECTTC-C-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred cccccCCCcccc-cccccccc-ceeeeeecccee-e-ccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 777777654221 22223333 245555444321 1 2223333345566666554322110 011122
Q ss_pred cCCCCccEEecCCCcceeeCCCcccccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhh
Q 047624 165 SNASNLMRLTIPQNGFSGKVPSLENLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNL 244 (353)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 244 (353)
.....+..+.+...........+..+..++.+.+..+- .. --..++..+..|+.+.+..+ ++.....++...
T Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~-~~------i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~ 262 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGV-TT------LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC 262 (379)
T ss_dssp CTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTC-CE------ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC
T ss_pred cccccccccccccceeEEeecccccccccceeeeccce-eE------EccccccCCccceEEEcCCC-ccEeCcccccee
Confidence 23344444444443322222334555666666553321 10 00123455666676666543 221222233333
Q ss_pred cccCcEEEecCccccCCCchhhcCCCCCcEEecCCceeeeec--CCCCCCCCcEEEeecccccccCChhhhcCCCCcEEe
Q 047624 245 STRIRILRVGNNQLFGNIPSELRNLVNLELLELGDNQFTGRI--PGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLD 322 (353)
Q Consensus 245 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 322 (353)
.+|+.+.+... +......+|.+|++|+.+.+.++.+.... ....+.+|+++.+..+ +......+|.+|++|+.+.
T Consensus 263 -~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 263 -TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp -TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred -ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 36777776543 22123346677777777777766554322 2255667777777543 4433445677777777777
Q ss_pred cCCCcCCCCCCcccccc
Q 047624 323 LSNNNLSGTIPTEVIGL 339 (353)
Q Consensus 323 l~~n~~~~~~~~~~~~l 339 (353)
+..+ ++.....+|.+.
T Consensus 340 ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 340 YPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCTT-CCEECTTTTTTS
T ss_pred ECCc-cCEEchhHhhCC
Confidence 7543 443333455444
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=8e-09 Score=89.18 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=26.4
Q ss_pred hhhcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCcccccccccccc--CCCCccEEec
Q 047624 113 SSIYNLSSLSNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASIS--NASNLMRLTI 175 (353)
Q Consensus 113 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l 175 (353)
..+..+++|+.|+++++.-. .++. + ..++|+.|++..+.+.......+. .+|+|++|+|
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence 33445556666666554211 1222 1 245566666555544322212222 3555555555
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.74 E-value=1.6e-06 Score=75.79 Aligned_cols=289 Identities=11% Similarity=0.082 Sum_probs=175.1
Q ss_pred ccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCCcccccChhhhhccccccEEEeCCCcCCCCCchhhcCCCCC
Q 047624 42 KLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQFVGQIPETLGELKRMRFIGFGANKLSGEIPSSIYNLSSL 121 (353)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 121 (353)
.+....+|+.+.+... +...-..+|..+.+|+.+.+..+ +...-..+|..+ +|+.+.+..+ +.......+.. .+|
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 3455678898888754 34344568999999999998654 443445567766 5777776543 33233334444 478
Q ss_pred CEEEcCCCCCCCCCCccccCCCCCCCEEeccCccccccccccccCCCCccEEecCCCcceeeCCC-------------cc
Q 047624 122 SNFDFPVNQLQGGLPTDLGFTLPNLERLNVGDNQFTGPIPASISNASNLMRLTIPQNGFSGKVPS-------------LE 188 (353)
Q Consensus 122 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-------------~~ 188 (353)
+.+.+..+.. .+....+. ...++.+.+..+ +...-...+..+..++.+.+........... +.
T Consensus 116 ~~i~lp~~~~--~i~~~~F~-~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 116 DDFEFPGATT--EIGNYIFY-NSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp SEEECCTTCC--EECTTTTT-TCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred ccccCCCccc--cccccccc-cceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 8888876432 33333332 235666665543 2223344566677788777765432211111 12
Q ss_pred cccCccEEEEeeccCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCchhHhhhcccCcEEEecCccccCCCchhhcC
Q 047624 189 NLHKLQWVVIAVNHLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPEAVGNLSTRIRILRVGNNQLFGNIPSELRN 268 (353)
Q Consensus 189 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 268 (353)
....+..+.+...... ........+..++.+.+..+ +.......+... ..|+.+.+..+ ++..-..++.+
T Consensus 192 ~~~~~~~~~~~~~~~~-------i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF~~ 261 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKT-------VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGM-KALDEIAIPKN-VTSIGSFLLQN 261 (379)
T ss_dssp TTCCCSEEECCTTCCE-------ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTC-SSCCEEEECTT-CCEECTTTTTT
T ss_pred ccccccccccccceeE-------Eeecccccccccceeeeccc-eeEEccccccCC-ccceEEEcCCC-ccEeCccccce
Confidence 2233333332211100 11224455667777777543 221223334444 48899988765 33233467888
Q ss_pred CCCCcEEecCCce-eeeecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEe
Q 047624 269 LVNLELLELGDNQ-FTGRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLD 347 (353)
Q Consensus 269 ~~~L~~L~l~~n~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~ 347 (353)
+.+|+.+.+..+- ..+......+.+|+++.+.++.+......+|.+|++|+.+.|..+ ++.....+|.++.+| +++.
T Consensus 262 ~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L-~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL-STIS 339 (379)
T ss_dssp CTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC-CCCC
T ss_pred eehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC-CEEE
Confidence 9999999997652 112233367899999999988887666788999999999999754 554556789999999 8988
Q ss_pred cCCC
Q 047624 348 LSQN 351 (353)
Q Consensus 348 l~~~ 351 (353)
+.++
T Consensus 340 ip~~ 343 (379)
T 4h09_A 340 YPKS 343 (379)
T ss_dssp CCTT
T ss_pred ECCc
Confidence 8653
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=2.5e-09 Score=83.46 Aligned_cols=117 Identities=18% Similarity=0.105 Sum_probs=75.0
Q ss_pred HHHhhhcccCCccEEEccCC-cCCccCch----hHhhhcccCcEEEecCccccCC----CchhhcCCCCCcEEecCCcee
Q 047624 212 EFVNSLVNAYGLELLEINTN-NFGGMLPE----AVGNLSTRIRILRVGNNQLFGN----IPSELRNLVNLELLELGDNQF 282 (353)
Q Consensus 212 ~~~~~l~~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~ 282 (353)
.+...+...+.|++|++++| .+.+.... .+... ++|++|++++|.+.+. +...+...++|++|++++|.+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 34556777888999999988 77654332 23333 4788899988887643 334556667888888888887
Q ss_pred eeecC------CCCCCCCcEEEe--eccccccc----CChhhhcCCCCcEEecCCCcCC
Q 047624 283 TGRIP------GRNLTSLAILVF--VENMLEGS----IPSSLGKCQNLILLDLSNNNLS 329 (353)
Q Consensus 283 ~~~~~------~~~~~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~ 329 (353)
.+... ....++|++|++ ++|.+.+. +...+...+.|++|++++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 75321 134456667777 55666543 2334455566666666666654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=1.9e-08 Score=78.47 Aligned_cols=115 Identities=12% Similarity=0.045 Sum_probs=51.8
Q ss_pred cccccCccEEEEeec-cCCCCCcchhHHHhhhcccCCccEEEccCCcCCccCch----hHhhhcccCcEEEecCccccCC
Q 047624 187 LENLHKLQWVVIAVN-HLGNGEKDDLEFVNSLVNAYGLELLEINTNNFGGMLPE----AVGNLSTRIRILRVGNNQLFGN 261 (353)
Q Consensus 187 ~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~ 261 (353)
+...+.++.|+++.| .++.... ..+...+...+.|++|++++|.+.+.... .+... ++|++|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~--~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTL--KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHH--HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHH--HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC-CCcCEEECcCCcCCHH
Confidence 344455555555554 4432111 12333444455555555555555433221 12222 2555555555555422
Q ss_pred ----CchhhcCCCCCcEEec--CCceeeeecCC------CCCCCCcEEEeecccc
Q 047624 262 ----IPSELRNLVNLELLEL--GDNQFTGRIPG------RNLTSLAILVFVENML 304 (353)
Q Consensus 262 ----~~~~~~~~~~L~~L~l--~~n~~~~~~~~------~~~~~L~~L~l~~~~~ 304 (353)
+..++...++|++|++ ++|.+...... ...++|++|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2334444555555555 45555432211 2234555555555554
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=3.2e-07 Score=69.79 Aligned_cols=84 Identities=11% Similarity=0.063 Sum_probs=49.1
Q ss_pred CCccEEEecCCccCCccCccccCCCcccEeecCCCc-ccccChhhhhcc----ccccEEEeCCCc-CCCCCchhhcCCCC
Q 047624 47 SKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAANQ-FVGQIPETLGEL----KRMRFIGFGANK-LSGEIPSSIYNLSS 120 (353)
Q Consensus 47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~l~~l~~ 120 (353)
.+|++||+++|.++..-...+..+++|+.|++++|. ++......+..+ ++|+.|++++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456677777666654444455666677777777664 443333334432 357777777664 55433344556677
Q ss_pred CCEEEcCCCC
Q 047624 121 LSNFDFPVNQ 130 (353)
Q Consensus 121 L~~L~l~~~~ 130 (353)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777776664
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=7.2e-07 Score=67.83 Aligned_cols=84 Identities=5% Similarity=0.092 Sum_probs=54.8
Q ss_pred CCCcEEEcccCcccccCCcccCCCCCccEEEecCCc-cCCccCccccCC----CcccEeecCCCc-ccccChhhhhcccc
Q 047624 23 VNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHHNN-LSGEIPSSFGNL----SSLERLSAAANQ-FVGQIPETLGELKR 96 (353)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~l~~ 96 (353)
..|++|++++|.+++.--..+.++++|++|++++|. +++.--..+..+ ++|++|++++|. ++..-...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457788888777665444556677788888888774 443333334443 367888887774 55444455667777
Q ss_pred ccEEEeCCCc
Q 047624 97 MRFIGFGANK 106 (353)
Q Consensus 97 L~~L~l~~~~ 106 (353)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888887775
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=1.6e-07 Score=76.97 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=21.3
Q ss_pred cCcEEEecCccccC--CCchhhcCCCCCcEEecCCceeee
Q 047624 247 RIRILRVGNNQLFG--NIPSELRNLVNLELLELGDNQFTG 284 (353)
Q Consensus 247 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~ 284 (353)
+|++|++++|.+++ .++..+..+++|+.|+|++|.+.+
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 56666666666553 233444556666666666666554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=1.7e-06 Score=70.86 Aligned_cols=79 Identities=27% Similarity=0.237 Sum_probs=63.2
Q ss_pred cCCCCCcEEecCCceeeeecCC----CCCCCCcEEEeecccccccCChhhhcCC--CCcEEecCCCcCCCCCCc------
Q 047624 267 RNLVNLELLELGDNQFTGRIPG----RNLTSLAILVFVENMLEGSIPSSLGKCQ--NLILLDLSNNNLSGTIPT------ 334 (353)
Q Consensus 267 ~~~~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~~~------ 334 (353)
.++++|++|+|++|.+.+.... ..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5689999999999999875432 3689999999999999854 3344444 999999999999977763
Q ss_pred -ccccccccceEEec
Q 047624 335 -EVIGLSSLSIYLDL 348 (353)
Q Consensus 335 -~~~~l~~l~~~l~l 348 (353)
.+..+|+| +.||=
T Consensus 245 ~il~~~P~L-~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKL-LRLDG 258 (267)
T ss_dssp HHHHHCTTC-CEESS
T ss_pred HHHHHCccc-CeECC
Confidence 36678999 78873
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.68 E-value=3.8e-05 Score=59.49 Aligned_cols=113 Identities=14% Similarity=0.142 Sum_probs=57.9
Q ss_pred hhhcccCCccEEEccCC-cCCccC----chhHhhhcccCcEEEecCccccCC----CchhhcCCCCCcEEecCCceeeee
Q 047624 215 NSLVNAYGLELLEINTN-NFGGML----PEAVGNLSTRIRILRVGNNQLFGN----IPSELRNLVNLELLELGDNQFTGR 285 (353)
Q Consensus 215 ~~l~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~ 285 (353)
..+...+.|+.|+++++ .+.+.. ...+... ..|++|++++|.+.+. +.+++...+.|++|+|++|.+.+.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 34444555666666553 444321 2222222 3666666666665532 233444556666666666666533
Q ss_pred cCC------CCCCCCcEEEeecc---cccc----cCChhhhcCCCCcEEecCCCcC
Q 047624 286 IPG------RNLTSLAILVFVEN---MLEG----SIPSSLGKCQNLILLDLSNNNL 328 (353)
Q Consensus 286 ~~~------~~~~~L~~L~l~~~---~~~~----~~~~~~~~~~~L~~l~l~~n~~ 328 (353)
... .....|++|+++++ .+.. .+...+...+.|+.|+++.|.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 221 33344666666543 2221 2344566677777777766543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.64 E-value=7e-06 Score=63.65 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=80.5
Q ss_pred ccCcEEEecCc-cccCC----CchhhcCCCCCcEEecCCceeeeecCC------CCCCCCcEEEeecccccccC----Ch
Q 047624 246 TRIRILRVGNN-QLFGN----IPSELRNLVNLELLELGDNQFTGRIPG------RNLTSLAILVFVENMLEGSI----PS 310 (353)
Q Consensus 246 ~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~------~~~~~L~~L~l~~~~~~~~~----~~ 310 (353)
+.|++|+++++ .+.+. +.+++...+.|++|+|++|.+.+.... .....|++|+|++|.|.+.. .+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 58999999986 66532 456677789999999999999865433 45678999999999997543 34
Q ss_pred hhhcCCCCcEEecCCCc---CCC----CCCcccccccccceEEecCCCC
Q 047624 311 SLGKCQNLILLDLSNNN---LSG----TIPTEVIGLSSLSIYLDLSQNQ 352 (353)
Q Consensus 311 ~~~~~~~L~~l~l~~n~---~~~----~~~~~~~~l~~l~~~l~l~~~~ 352 (353)
++...+.|++|+|++|. +.. .+.+.+..-++| .+|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL-~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESL-LRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSC-CEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCc-CeEeccCCC
Confidence 56677889999998763 332 234566778899 899998765
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.89 E-value=0.0016 Score=47.01 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=30.7
Q ss_pred EEecCCceee-eecCCCCCCCCcEEEeecccccccCChhhhcCCCCcEEecCCCcCC
Q 047624 274 LLELGDNQFT-GRIPGRNLTSLAILVFVENMLEGSIPSSLGKCQNLILLDLSNNNLS 329 (353)
Q Consensus 274 ~L~l~~n~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 329 (353)
.++.+++.++ ..+|...+++++.|+|++|.++..-+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555543 1333344445666666666665444445566666666666666654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.85 E-value=0.002 Score=46.41 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=43.1
Q ss_pred EEEeeccccc-ccCChhhhcCCCCcEEecCCCcCCCCCCcccccccccceEEecCCCCC
Q 047624 296 ILVFVENMLE-GSIPSSLGKCQNLILLDLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 353 (353)
Q Consensus 296 ~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~l~l~~~~~ 353 (353)
.++.++++++ ..+|..+- ++|+.|+|++|.++...+..|..+++| ++|+|.+|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L-~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPAL-RTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTC-CEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhcccc-CEEEecCCCe
Confidence 5666777665 35665433 479999999999996666788999999 8999999975
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.93 E-value=5.4 Score=26.70 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=26.8
Q ss_pred CCCccccCcccccCCCCcEEEcccCcccccCCcccCCCCCccEEEecC
Q 047624 9 NTYGGQIPDNISHCVNLESLFLAHNELVGKVPGKLGSLSKLRTLAVHH 56 (353)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 56 (353)
..++......|..|..|+.+.|..+ +..+-..+|.+|.+|+.+.+.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3444444556666666666666544 2334455566666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.92 E-value=6.5 Score=26.26 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=34.7
Q ss_pred CcccccCCcccCCCCCccEEEecCCccCCccCccccCCCcccEeecCCC
Q 047624 33 NELVGKVPGKLGSLSKLRTLAVHHNNLSGEIPSSFGNLSSLERLSAAAN 81 (353)
Q Consensus 33 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (353)
..+..+-..+|.++.+|+.+.+... +...-..+|..+.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3445556678888999999998865 33244567888888888888663
Done!