BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047625
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 298 bits (762), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 166/375 (44%), Positives = 229/375 (61%), Gaps = 16/375 (4%)
Query: 1 MQVEQVLFMNGGEGDNSYAKNSAPPREAILKAKPLLHESLFDLYSNGFPD---CIRFTDM 57
M++++VL MNGGEGD SYAKNSA + + K KP+L + + +L P+ CI+ D+
Sbjct: 1 MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60
Query: 58 GCSSGPNAFLPTWQAIEALDTICSRLKHK--PPILHAFLNDLPGNDFNTLSKSLPSFYER 115
GC+SGPN L ++++D + K++ P + FLNDL NDFN++ K LPSFY +
Sbjct: 61 GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120
Query: 116 LKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLL 175
L+ E GSC IG PGS Y RLFP ++ ++S +CL WLSQVP LV+E GI
Sbjct: 121 LEKE-NGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGT- 178
Query: 176 NKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFI--GNDKHHTG 233
NK + +K S V KAYLDQF DFT+FL EEL GRM+L I G +
Sbjct: 179 NKGSIYSSKA-SRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVELDARN 237
Query: 234 VFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETSHISW 293
+L+ M +ND+V EG +EE KL+SFN P+Y P EEV+ ++E EGSF I LET + +
Sbjct: 238 AIDLLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLY 297
Query: 294 SVGYENDDKGLEFNKHARAKNVANNIRAVSESLLANHFGSAIMDDLFHRFTIKISAHLEM 353
G+ DD +H +A+ VA+++RAV E +LA+HFG AI+ D+FHRF + L +
Sbjct: 298 DAGFSIDD------EHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKHAAKVLPL 351
Query: 354 GLGAHTVLFIYLIKK 368
G G + L I L KK
Sbjct: 352 GKGFYNNLIISLAKK 366
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/382 (42%), Positives = 230/382 (60%), Gaps = 18/382 (4%)
Query: 1 MQVEQVLFMNGGEGDNSYAKNSAPPREAILKAKPLLHESLFDLYSNGFPD---CIRFTDM 57
M++++VL MNGGEGD SYAKNS+ +++ KP+L + + +L P+ C + D+
Sbjct: 1 MELQEVLHMNGGEGDTSYAKNSSY-NLFLIRVKPVLEQCIQELLRANLPNINKCFKVGDL 59
Query: 58 GCSSGPNAFLPTWQAIEALDTICSRLKHK--PPILHAFLNDLPGNDFNTLSKSLPSFYER 115
GC+SGPN F ++++D + K++ P + FLNDL NDFN++ K LPSFY
Sbjct: 60 GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119
Query: 116 LKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLL 175
L+ E GSC IG PGS Y RLFP ++ ++S +CL+WLSQVP LV+E GI +
Sbjct: 120 LEKEN-GRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISV- 177
Query: 176 NKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGNDKH--HTG 233
NK + +K P + KAYLDQF DFT+FL EEL GRM+L FI + H
Sbjct: 178 NKGCIYSSKASRPP-IQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPN 236
Query: 234 VFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETSHISW 293
+L+ M +ND+V EG +EE KL+SFN PIY P EEV++++E EGSF I LET + +
Sbjct: 237 SMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPY 296
Query: 294 SVGYENDD-------KGLEFNKHARAKNVANNIRAVSESLLANHFGSAIMDDLFHRFTIK 346
G+ DD + ++HARA +VA+ +R++ E +LA+HFG AI+ DL HR
Sbjct: 297 DAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKN 356
Query: 347 ISAHLEMGLGAHTVLFIYLIKK 368
+ L G G + + I L KK
Sbjct: 357 AAKVLRSGKGFYDSVIISLAKK 378
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 254 bits (649), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 152/376 (40%), Positives = 208/376 (55%), Gaps = 27/376 (7%)
Query: 1 MQVEQVLFMNGGEGDNSYAKNSAPPREAILKAKPLLHESLFDLYS-NGFPDCIRFTDMGC 59
M V QVL M GG G+NSYA NS R+ I KP+ ++ LYS + + D+GC
Sbjct: 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60
Query: 60 SSGPNAFLPTWQAIEALDTICSRL-KHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKT 118
SSGPNA + I+ ++ + ++ + P FLNDLPGNDFN + +SLP
Sbjct: 61 SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPI------- 113
Query: 119 EKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKR 178
ND G CFI PGS YGRLFP L+ ++SS+ L WLSQVP + S NK
Sbjct: 114 --ENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES-------NKG 164
Query: 179 DVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGN---DKHHTG-- 233
++ +A TC P +V AY QF+ D FL R +E+ GGRM+L +G D+ T
Sbjct: 165 NIYMANTC-PQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECC 223
Query: 234 -VFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETSHIS 292
+++L+ M LN MV EGLIEE K++ FN P Y P EV I +EGSF I +E S I
Sbjct: 224 LIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIY 283
Query: 293 WSVGYENDDKGLEFNKHARAKNVANNIRAVSESLLANHFGSAIMDDLFHRFTIKISAHLE 352
WS ++ D G + NVA +RAV+E LL +HFG AI++D+FHR+ + I +
Sbjct: 284 WSSCTKDGDGGGSVEEE--GYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMS 341
Query: 353 MGLGAHTVLFIYLIKK 368
+ + LI+K
Sbjct: 342 KEKTKFINVIVSLIRK 357
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 174/369 (47%), Gaps = 34/369 (9%)
Query: 1 MQVEQVLFMNGGEGDNSYAKNSAPPREAILKAKPLLHESLFDLY--SNGFPDCIRFTDMG 58
M++E++L M GG+G +SYA NS LL E+L +++ S+ P D+G
Sbjct: 1 MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 60
Query: 59 CSSGPNAFLPTWQAIEALDTICSRLKHK-------PPILHAFLNDLPGNDFNTLSKSLPS 111
CSSG N + +D I + + PP AF +DLP NDFNTL + LP
Sbjct: 61 CSSGANT-------VHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPP 113
Query: 112 FYERLKTEK--RNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSE 169
E+ D S F+ PGS Y RLFP ++ +S+F L+WLSQVP E V++
Sbjct: 114 LVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVP-ESVTD 172
Query: 170 CGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIG--- 226
N+ V + + AY QF++D FL R E+K GG M L +G
Sbjct: 173 RRSAAYNRGRVFIHGAGEKTTT--AYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTS 230
Query: 227 -NDKHHTGVFELMGM----VLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSF 281
+ G L G +D+V EGL+ K + FN P+Y P +++ ++V++ GSF
Sbjct: 231 VDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSF 290
Query: 282 NIHQLETSHISWSVGYENDDKGLEFNKHARAKNVANNIRAVSESLLANHFGSAIMDDLFH 341
I +L + D E + A++ R+V+ L+ H G + + LF
Sbjct: 291 AIDKLVVYKGGSPLVVNEPDDASEV-----GRAFASSCRSVAGVLVEAHIGEELSNKLFS 345
Query: 342 RFTIKISAH 350
R + ++H
Sbjct: 346 RVESRATSH 354
>pdb|3EJ6|A Chain A, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|B Chain B, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|C Chain C, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|D Chain D, Neurospora Crassa Catalase-3 Crystal Structure
Length = 688
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 38 ESLFDLYSNGFP-----DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHA 92
E FD+ N P D IRF D+ S P+ QA A D+ +P LH
Sbjct: 136 EGNFDIVGNNIPVFFIQDAIRFPDLIHSVKPSPDNEVPQAATAHDSAWDFFSSQPSALHT 195
Query: 93 FLNDLPGN 100
+ GN
Sbjct: 196 LFWAMSGN 203
>pdb|3KW3|A Chain A, Crystal Structure Of Alanine Racemase From Bartonella
Henselae With Covalently Bound Pyridoxal Phosphate
pdb|3KW3|B Chain B, Crystal Structure Of Alanine Racemase From Bartonella
Henselae With Covalently Bound Pyridoxal Phosphate
Length = 376
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 27 EAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHK 86
E L+ K +L E++ NGFP + + SG L +W IE T+C + K
Sbjct: 80 EEALQLKAVLPENVMIALLNGFPH--KAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKK 137
Query: 87 -PPILHAFLN-DLPGNDFNTLSKSL--PSFYER 115
P I+ N G D L K + P+ +E+
Sbjct: 138 FPAIIQVDTNMSRLGLDKKELQKLIKNPTIFEK 170
>pdb|3K4X|A Chain A, Eukaryotic Sliding Clamp Pcna Bound To Dna
Length = 798
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 13 EGDNSYAKNSAPPREAILKAKPLLHESLFDLYSNGFPDCIRFTDMGC 59
EG NS A NS L+AK SLF +GF DC++ + C
Sbjct: 530 EGSNSQASNSGA-----LEAK-FEEASLFKRIIDGFKDCVQLVNFQC 570
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,779,532
Number of Sequences: 62578
Number of extensions: 502567
Number of successful extensions: 1011
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 10
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)