Query 047625
Match_columns 368
No_of_seqs 151 out of 557
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 13:02:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 1.3E-97 3E-102 729.6 38.2 359 1-367 13-385 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 1.2E-90 2.6E-95 676.9 31.3 322 36-368 1-334 (334)
3 PRK01683 trans-aconitate 2-met 99.6 2E-13 4.4E-18 128.7 18.0 244 16-368 7-257 (258)
4 PRK14103 trans-aconitate 2-met 99.5 3.3E-13 7.1E-18 127.3 17.0 226 16-351 5-232 (255)
5 PRK10258 biotin biosynthesis p 99.4 1.1E-11 2.4E-16 116.5 15.9 229 16-368 18-251 (251)
6 TIGR02072 BioC biotin biosynth 99.4 1.4E-11 3.1E-16 113.5 15.9 217 15-348 6-223 (240)
7 COG4106 Tam Trans-aconitate me 99.0 2.8E-09 6E-14 96.7 12.4 220 50-368 30-256 (257)
8 PTZ00098 phosphoethanolamine N 98.9 4.1E-08 8.9E-13 93.3 17.0 195 50-348 52-246 (263)
9 TIGR00740 methyltransferase, p 98.9 4.2E-08 9E-13 91.6 14.3 164 50-282 53-221 (239)
10 PRK08317 hypothetical protein; 98.9 3.3E-07 7.2E-12 84.2 19.8 219 50-368 19-240 (241)
11 TIGR02752 MenG_heptapren 2-hep 98.9 8.9E-09 1.9E-13 95.3 8.7 167 51-289 46-219 (231)
12 PLN02233 ubiquinone biosynthes 98.8 4.5E-08 9.8E-13 92.9 12.7 166 51-286 74-246 (261)
13 PRK15068 tRNA mo(5)U34 methylt 98.8 1.4E-08 3E-13 99.3 9.1 153 51-289 123-275 (322)
14 PLN02244 tocopherol O-methyltr 98.8 1.1E-07 2.4E-12 93.7 15.4 157 50-287 118-277 (340)
15 PLN02336 phosphoethanolamine N 98.8 1.5E-07 3.2E-12 96.6 16.8 190 51-349 267-459 (475)
16 PRK15451 tRNA cmo(5)U34 methyl 98.8 1.5E-07 3.3E-12 88.4 14.4 165 50-282 56-224 (247)
17 PF13489 Methyltransf_23: Meth 98.7 1.7E-08 3.7E-13 87.1 6.2 90 139-285 71-160 (161)
18 PRK11036 putative S-adenosyl-L 98.7 2E-07 4.3E-12 88.0 12.5 165 50-290 44-209 (255)
19 TIGR00452 methyltransferase, p 98.7 9.4E-08 2E-12 93.0 10.5 92 140-288 182-273 (314)
20 PLN02396 hexaprenyldihydroxybe 98.7 2.4E-07 5.3E-12 90.5 12.9 102 135-289 187-290 (322)
21 COG2226 UbiE Methylase involve 98.6 5.7E-07 1.2E-11 84.0 13.3 164 50-285 51-221 (238)
22 PRK00216 ubiE ubiquinone/menaq 98.6 5.6E-07 1.2E-11 82.9 11.4 169 51-292 52-229 (239)
23 smart00828 PKS_MT Methyltransf 98.6 4.7E-07 1E-11 83.3 10.7 82 144-290 65-146 (224)
24 PLN02490 MPBQ/MSBQ methyltrans 98.5 6.3E-07 1.4E-11 88.1 11.7 148 51-293 114-261 (340)
25 PRK11705 cyclopropane fatty ac 98.5 1.1E-05 2.5E-10 80.7 20.0 140 144-361 226-368 (383)
26 KOG2940 Predicted methyltransf 98.5 1.8E-06 3.8E-11 79.2 12.8 94 142-288 133-227 (325)
27 PF01209 Ubie_methyltran: ubiE 98.5 1.1E-07 2.3E-12 88.9 5.1 165 50-286 47-218 (233)
28 PF02353 CMAS: Mycolic acid cy 98.5 1.3E-05 2.8E-10 76.7 19.0 74 202-289 144-218 (273)
29 PF08241 Methyltransf_11: Meth 98.5 3.4E-07 7.4E-12 71.6 5.8 50 132-222 46-95 (95)
30 TIGR01934 MenG_MenH_UbiE ubiqu 98.4 2.2E-06 4.7E-11 78.2 10.0 167 50-290 39-212 (223)
31 TIGR02716 C20_methyl_CrtF C-20 98.4 9.1E-06 2E-10 78.7 14.6 155 50-285 149-303 (306)
32 PF08242 Methyltransf_12: Meth 98.3 7E-07 1.5E-11 71.4 5.0 99 55-220 1-99 (99)
33 PRK06202 hypothetical protein; 98.3 1.1E-05 2.4E-10 74.9 13.2 168 49-293 59-227 (232)
34 KOG1541 Predicted protein carb 98.3 1E-05 2.3E-10 73.9 12.3 60 140-229 106-165 (270)
35 PRK11873 arsM arsenite S-adeno 98.3 5.9E-06 1.3E-10 78.5 11.0 153 51-288 78-230 (272)
36 PF12847 Methyltransf_18: Meth 98.3 4.4E-06 9.6E-11 67.9 8.4 23 202-224 89-111 (112)
37 PRK11207 tellurite resistance 98.3 1.3E-05 2.8E-10 72.8 12.1 138 51-287 31-169 (197)
38 COG2230 Cfa Cyclopropane fatty 98.2 0.00011 2.4E-09 70.2 17.9 72 201-289 153-224 (283)
39 PRK11088 rrmA 23S rRNA methylt 98.2 1.7E-05 3.6E-10 75.6 11.6 22 50-71 85-106 (272)
40 TIGR02021 BchM-ChlM magnesium 98.2 0.00015 3.3E-09 66.5 17.1 30 260-290 179-208 (219)
41 PF13847 Methyltransf_31: Meth 98.1 3.7E-06 8E-11 72.8 5.8 110 50-226 3-112 (152)
42 PRK06922 hypothetical protein; 98.1 4.9E-06 1.1E-10 87.4 7.5 118 51-224 419-537 (677)
43 PRK00121 trmB tRNA (guanine-N( 98.1 3.7E-06 8.1E-11 76.7 5.4 141 24-225 14-157 (202)
44 KOG1540 Ubiquinone biosynthesi 98.1 2.1E-05 4.6E-10 73.4 9.4 168 50-285 100-278 (296)
45 TIGR01983 UbiG ubiquinone bios 98.1 5.3E-05 1.2E-09 69.5 11.9 95 144-289 110-204 (224)
46 TIGR00477 tehB tellurite resis 98.0 3.1E-05 6.8E-10 70.2 9.7 77 144-287 92-168 (195)
47 KOG1270 Methyltransferases [Co 98.0 2.7E-05 5.8E-10 73.0 9.3 75 202-287 173-248 (282)
48 PRK07580 Mg-protoporphyrin IX 98.0 0.00023 4.9E-09 65.5 15.6 31 261-292 188-218 (230)
49 PRK05785 hypothetical protein; 98.0 0.00013 2.8E-09 67.8 13.6 74 51-161 52-125 (226)
50 PF08003 Methyltransf_9: Prote 98.0 2.8E-05 6.1E-10 74.7 9.1 149 51-285 116-264 (315)
51 PRK05134 bifunctional 3-demeth 98.0 7.5E-05 1.6E-09 69.1 11.8 95 143-288 111-205 (233)
52 PRK12335 tellurite resistance 98.0 3.3E-05 7.2E-10 74.2 9.3 76 144-287 182-258 (287)
53 TIGR02081 metW methionine bios 98.0 3.5E-05 7.7E-10 69.6 8.9 27 263-290 143-169 (194)
54 PLN02336 phosphoethanolamine N 98.0 5.7E-05 1.2E-09 77.5 11.5 78 142-282 99-176 (475)
55 PRK11188 rrmJ 23S rRNA methylt 97.9 6.9E-05 1.5E-09 68.8 10.3 111 51-229 52-170 (209)
56 TIGR00537 hemK_rel_arch HemK-r 97.9 0.00013 2.7E-09 65.1 10.9 125 51-228 20-144 (179)
57 TIGR03438 probable methyltrans 97.9 4.5E-05 9.7E-10 73.9 8.3 130 34-229 48-182 (301)
58 TIGR00138 gidB 16S rRNA methyl 97.9 6.2E-05 1.3E-09 67.6 8.4 49 207-262 125-173 (181)
59 KOG3010 Methyltransferase [Gen 97.8 0.00027 5.9E-09 65.6 12.2 47 141-229 95-141 (261)
60 PF03848 TehB: Tellurite resis 97.8 5.9E-05 1.3E-09 68.4 7.4 21 50-70 30-50 (192)
61 smart00138 MeTrc Methyltransfe 97.8 0.00029 6.2E-09 67.1 11.6 43 142-223 199-241 (264)
62 COG4123 Predicted O-methyltran 97.7 8.7E-05 1.9E-09 69.7 7.3 37 188-224 134-170 (248)
63 KOG2361 Predicted methyltransf 97.7 0.00043 9.3E-09 64.3 11.3 198 17-289 30-238 (264)
64 PF00891 Methyltransf_2: O-met 97.7 0.00061 1.3E-08 63.5 12.3 103 50-229 100-204 (241)
65 PRK09489 rsmC 16S ribosomal RN 97.7 0.00012 2.6E-09 72.3 7.8 107 52-225 198-304 (342)
66 TIGR00091 tRNA (guanine-N(7)-) 97.6 0.00045 9.8E-09 62.5 10.5 113 51-224 17-132 (194)
67 PF05175 MTS: Methyltransferas 97.6 0.00025 5.4E-09 62.8 8.6 110 51-225 32-141 (170)
68 TIGR03587 Pse_Me-ase pseudamin 97.6 0.0002 4.4E-09 65.5 8.2 105 14-159 14-118 (204)
69 PF05401 NodS: Nodulation prot 97.6 0.0002 4.4E-09 64.7 7.6 94 49-225 42-147 (201)
70 PLN02585 magnesium protoporphy 97.6 0.0031 6.7E-08 61.6 16.4 28 263-291 275-302 (315)
71 PLN02232 ubiquinone biosynthes 97.6 0.00022 4.8E-09 62.6 7.3 100 141-285 39-144 (160)
72 PF13649 Methyltransf_25: Meth 97.5 5.4E-05 1.2E-09 60.8 2.7 100 54-218 1-101 (101)
73 PRK15001 SAM-dependent 23S rib 97.4 0.00051 1.1E-08 68.7 8.4 111 52-224 230-340 (378)
74 TIGR03534 RF_mod_PrmC protein- 97.4 0.00057 1.2E-08 63.6 8.3 25 200-224 193-217 (251)
75 TIGR00438 rrmJ cell division p 97.4 0.0009 2E-08 60.0 9.2 29 201-229 123-151 (188)
76 PRK14967 putative methyltransf 97.4 0.0015 3.3E-08 60.3 10.5 69 201-279 136-204 (223)
77 PRK14121 tRNA (guanine-N(7)-)- 97.4 0.00037 7.9E-09 69.7 6.7 112 52-224 124-235 (390)
78 TIGR03533 L3_gln_methyl protei 97.4 0.001 2.2E-08 64.0 9.4 24 202-225 229-252 (284)
79 PRK00107 gidB 16S rRNA methylt 97.3 0.00058 1.3E-08 61.7 7.0 23 204-226 125-147 (187)
80 PRK13255 thiopurine S-methyltr 97.3 0.0059 1.3E-07 56.5 13.8 59 203-290 134-192 (218)
81 PRK04266 fibrillarin; Provisio 97.3 0.0023 4.9E-08 59.6 10.6 22 206-227 158-179 (226)
82 PRK08287 cobalt-precorrin-6Y C 97.3 0.002 4.2E-08 57.8 9.6 33 50-97 31-63 (187)
83 PTZ00146 fibrillarin; Provisio 97.2 0.0027 5.9E-08 61.1 11.0 21 52-72 134-154 (293)
84 PF06080 DUF938: Protein of un 97.2 0.0016 3.5E-08 59.4 8.8 153 53-285 28-189 (204)
85 TIGR02469 CbiT precorrin-6Y C5 97.2 0.0015 3.2E-08 53.6 7.5 21 204-224 102-122 (124)
86 PRK11805 N5-glutamine S-adenos 97.1 0.0023 5E-08 62.3 9.3 23 203-225 242-264 (307)
87 TIGR03840 TMPT_Se_Te thiopurin 97.1 0.0054 1.2E-07 56.6 11.3 61 203-292 131-191 (213)
88 COG2227 UbiG 2-polyprenyl-3-me 97.1 0.002 4.3E-08 60.0 8.3 71 206-288 143-215 (243)
89 KOG3178 Hydroxyindole-O-methyl 97.1 0.0062 1.3E-07 59.6 11.3 184 9-289 138-331 (342)
90 cd02440 AdoMet_MTases S-adenos 97.0 0.0014 3E-08 50.5 5.6 41 143-223 63-103 (107)
91 PRK00312 pcm protein-L-isoaspa 97.0 0.0071 1.5E-07 55.2 10.9 19 50-68 78-96 (212)
92 PF07021 MetW: Methionine bios 97.0 0.0077 1.7E-07 54.4 10.8 97 141-293 70-172 (193)
93 PRK13944 protein-L-isoaspartat 97.0 0.0038 8.1E-08 57.0 8.8 21 51-71 73-93 (205)
94 PF03291 Pox_MCEL: mRNA cappin 97.0 0.0029 6.4E-08 62.2 8.4 50 141-227 138-189 (331)
95 PHA03411 putative methyltransf 96.9 0.0029 6.2E-08 60.4 7.8 141 51-283 65-209 (279)
96 PLN03075 nicotianamine synthas 96.9 0.0078 1.7E-07 58.1 10.5 114 50-229 123-237 (296)
97 TIGR00080 pimt protein-L-isoas 96.9 0.0059 1.3E-07 56.0 9.3 21 51-71 78-98 (215)
98 PF05148 Methyltransf_8: Hypot 96.8 0.0013 2.9E-08 60.1 4.4 50 202-288 136-185 (219)
99 PF13659 Methyltransf_26: Meth 96.8 0.0031 6.8E-08 51.4 6.3 24 202-225 93-116 (117)
100 PRK13942 protein-L-isoaspartat 96.8 0.0087 1.9E-07 55.0 9.5 20 51-70 77-96 (212)
101 PRK10901 16S rRNA methyltransf 96.8 0.011 2.5E-07 60.0 11.2 128 51-227 245-375 (427)
102 COG2242 CobL Precorrin-6B meth 96.7 0.0091 2E-07 53.7 8.6 35 178-227 104-138 (187)
103 TIGR00536 hemK_fam HemK family 96.7 0.0091 2E-07 57.3 9.3 24 202-225 222-245 (284)
104 TIGR00563 rsmB ribosomal RNA s 96.6 0.0095 2.1E-07 60.6 9.5 130 51-229 239-373 (426)
105 PRK14966 unknown domain/N5-glu 96.6 0.012 2.5E-07 59.6 9.5 23 203-225 360-382 (423)
106 PRK01544 bifunctional N5-gluta 96.6 0.006 1.3E-07 63.4 7.7 24 202-225 247-270 (506)
107 PRK00811 spermidine synthase; 96.6 0.0072 1.6E-07 58.1 7.7 118 49-225 75-192 (283)
108 PRK09328 N5-glutamine S-adenos 96.6 0.0053 1.2E-07 58.1 6.6 24 201-224 215-238 (275)
109 PRK14968 putative methyltransf 96.5 0.02 4.3E-07 50.6 9.8 24 202-225 126-149 (188)
110 PRK14903 16S rRNA methyltransf 96.5 0.016 3.4E-07 59.1 10.2 130 51-229 238-371 (431)
111 PF05891 Methyltransf_PK: AdoM 96.5 0.0023 5.1E-08 58.8 3.5 94 126-288 106-201 (218)
112 COG2813 RsmC 16S RNA G1207 met 96.5 0.011 2.3E-07 57.0 8.1 112 52-229 160-271 (300)
113 KOG4300 Predicted methyltransf 96.4 0.022 4.9E-07 52.0 9.2 59 128-229 129-187 (252)
114 KOG3045 Predicted RNA methylas 96.3 0.0076 1.6E-07 56.7 6.0 24 202-225 242-265 (325)
115 PRK04457 spermidine synthase; 96.3 0.0068 1.5E-07 57.6 5.8 25 205-229 158-182 (262)
116 PRK14902 16S rRNA methyltransf 96.3 0.029 6.3E-07 57.3 10.6 127 51-227 251-382 (444)
117 TIGR00406 prmA ribosomal prote 96.2 0.0098 2.1E-07 57.3 6.4 25 205-229 240-264 (288)
118 PRK14904 16S rRNA methyltransf 96.2 0.023 5E-07 58.1 9.1 30 200-229 353-382 (445)
119 PF03141 Methyltransf_29: Puta 96.2 0.0076 1.6E-07 61.6 5.4 49 139-228 174-223 (506)
120 PF12147 Methyltransf_20: Puta 96.1 0.17 3.7E-06 48.7 13.6 60 206-282 231-292 (311)
121 TIGR03704 PrmC_rel_meth putati 95.9 0.043 9.3E-07 51.8 9.0 23 203-225 195-217 (251)
122 PRK07402 precorrin-6B methylas 95.9 0.043 9.4E-07 49.4 8.5 25 202-226 120-144 (196)
123 TIGR00417 speE spermidine synt 95.8 0.023 5E-07 54.1 6.8 20 205-224 167-186 (270)
124 PRK00517 prmA ribosomal protei 95.8 0.04 8.6E-07 51.8 8.3 21 205-225 194-214 (250)
125 PRK14901 16S rRNA methyltransf 95.8 0.073 1.6E-06 54.3 10.7 29 199-227 359-387 (434)
126 PF02390 Methyltransf_4: Putat 95.5 0.049 1.1E-06 49.5 7.3 113 53-224 20-133 (195)
127 COG2890 HemK Methylase of poly 95.4 0.083 1.8E-06 50.8 9.0 126 53-225 113-239 (280)
128 COG2518 Pcm Protein-L-isoaspar 95.4 0.064 1.4E-06 49.2 7.6 21 51-72 73-93 (209)
129 PRK00377 cbiT cobalt-precorrin 95.3 0.094 2E-06 47.4 8.5 22 204-225 125-146 (198)
130 TIGR00446 nop2p NOL1/NOP2/sun 95.3 0.22 4.8E-06 47.2 11.3 31 199-229 174-204 (264)
131 TIGR01177 conserved hypothetic 95.2 0.15 3.3E-06 50.0 10.2 27 203-229 273-299 (329)
132 PRK01581 speE spermidine synth 95.1 0.1 2.2E-06 51.9 8.5 21 205-225 249-269 (374)
133 PLN02366 spermidine synthase 95.0 0.069 1.5E-06 52.1 7.2 117 49-225 90-207 (308)
134 PRK01544 bifunctional N5-gluta 95.0 0.064 1.4E-06 55.8 7.3 140 23-224 323-462 (506)
135 PF10294 Methyltransf_16: Puta 94.3 0.074 1.6E-06 47.2 5.1 35 204-238 136-170 (173)
136 PF01135 PCMT: Protein-L-isoas 94.2 0.14 3.1E-06 47.0 6.8 19 51-69 73-91 (209)
137 KOG2899 Predicted methyltransf 94.0 0.23 5E-06 46.6 7.7 62 201-279 186-247 (288)
138 KOG3191 Predicted N6-DNA-methy 93.8 2.7 5.9E-05 37.9 13.7 88 32-151 28-115 (209)
139 PRK03612 spermidine synthase; 93.5 0.22 4.8E-06 52.0 7.6 41 206-250 397-437 (521)
140 COG0220 Predicted S-adenosylme 93.5 1 2.2E-05 42.0 11.2 65 127-224 99-164 (227)
141 KOG1499 Protein arginine N-met 93.0 0.17 3.6E-06 49.8 5.2 105 50-221 60-164 (346)
142 PRK13943 protein-L-isoaspartat 92.9 0.69 1.5E-05 45.4 9.5 21 51-71 81-101 (322)
143 PF01728 FtsJ: FtsJ-like methy 92.8 0.61 1.3E-05 41.2 8.4 36 50-99 23-58 (181)
144 KOG1331 Predicted methyltransf 92.7 0.11 2.3E-06 49.8 3.4 53 139-229 96-148 (293)
145 PLN02672 methionine S-methyltr 92.2 0.27 6E-06 55.3 6.5 26 204-229 258-283 (1082)
146 PRK00274 ksgA 16S ribosomal RN 92.2 0.052 1.1E-06 51.8 0.7 57 5-71 7-63 (272)
147 KOG1975 mRNA cap methyltransfe 92.1 0.55 1.2E-05 45.9 7.4 120 51-229 118-242 (389)
148 PRK15128 23S rRNA m(5)C1962 me 91.4 2.1 4.6E-05 43.2 11.3 28 198-225 313-340 (396)
149 PF01234 NNMT_PNMT_TEMT: NNMT/ 91.0 0.38 8.1E-06 45.7 5.1 82 145-287 157-238 (256)
150 TIGR03439 methyl_EasF probable 90.7 0.91 2E-05 44.5 7.6 24 50-73 76-99 (319)
151 PRK11783 rlmL 23S rRNA m(2)G24 89.7 1.1 2.4E-05 48.6 8.0 26 200-225 632-657 (702)
152 COG1352 CheR Methylase of chem 88.4 3 6.6E-05 39.8 9.1 50 50-108 96-145 (268)
153 COG2264 PrmA Ribosomal protein 87.9 0.37 8.1E-06 46.7 2.6 20 50-69 162-181 (300)
154 PF06325 PrmA: Ribosomal prote 86.8 0.58 1.3E-05 45.3 3.2 18 52-69 163-180 (295)
155 PLN02781 Probable caffeoyl-CoA 86.6 1.7 3.6E-05 40.6 6.1 22 50-71 68-89 (234)
156 PF01739 CheR: CheR methyltran 86.1 1.4 3E-05 40.1 5.1 19 206-224 157-175 (196)
157 PHA03412 putative methyltransf 85.9 0.47 1E-05 44.5 2.0 21 51-71 50-70 (241)
158 PF13679 Methyltransf_32: Meth 85.7 0.94 2E-05 38.6 3.7 40 30-71 7-46 (141)
159 TIGR00478 tly hemolysin TlyA f 85.7 0.57 1.2E-05 43.7 2.5 20 51-70 76-95 (228)
160 PRK11933 yebU rRNA (cytosine-C 85.3 3.5 7.5E-05 42.7 8.2 26 204-229 222-247 (470)
161 PRK13256 thiopurine S-methyltr 84.9 9.3 0.0002 35.6 10.1 51 208-288 147-197 (226)
162 PF08123 DOT1: Histone methyla 83.4 3.7 8E-05 37.6 6.7 24 199-222 133-156 (205)
163 PTZ00338 dimethyladenosine tra 83.3 1.1 2.4E-05 43.4 3.4 51 51-102 37-99 (294)
164 PF05724 TPMT: Thiopurine S-me 83.1 14 0.00031 34.0 10.6 90 132-290 101-192 (218)
165 COG2263 Predicted RNA methylas 82.8 0.59 1.3E-05 42.3 1.2 18 51-68 46-63 (198)
166 smart00650 rADc Ribosomal RNA 82.5 0.6 1.3E-05 40.9 1.1 21 51-71 14-34 (169)
167 PF08704 GCD14: tRNA methyltra 81.8 6.1 0.00013 37.3 7.7 21 52-72 42-62 (247)
168 PRK03522 rumB 23S rRNA methylu 81.2 1.6 3.6E-05 42.4 3.7 20 51-70 174-193 (315)
169 PRK14896 ksgA 16S ribosomal RN 80.2 0.88 1.9E-05 43.0 1.4 21 51-71 30-50 (258)
170 PF02384 N6_Mtase: N-6 DNA Met 80.1 5.7 0.00012 38.2 7.1 40 50-97 46-85 (311)
171 PLN02823 spermine synthase 79.8 6.3 0.00014 38.9 7.3 21 206-226 201-222 (336)
172 TIGR00755 ksgA dimethyladenosi 79.6 1.6 3.5E-05 40.9 3.0 22 50-71 29-50 (253)
173 KOG2904 Predicted methyltransf 78.8 1.3 2.9E-05 42.3 2.1 27 203-229 264-290 (328)
174 PRK11727 23S rRNA mA1618 methy 78.2 2.1 4.5E-05 42.0 3.4 19 50-68 114-132 (321)
175 PRK10909 rsmD 16S rRNA m(2)G96 77.9 1.8 3.9E-05 39.5 2.6 19 52-70 55-73 (199)
176 PRK04148 hypothetical protein; 75.7 7.2 0.00016 33.3 5.6 18 51-68 17-35 (134)
177 COG4976 Predicted methyltransf 74.1 2.5 5.4E-05 39.6 2.5 65 202-290 203-267 (287)
178 PF09243 Rsm22: Mitochondrial 73.9 12 0.00025 35.8 7.2 63 147-225 103-168 (274)
179 KOG1500 Protein arginine N-met 73.3 3.1 6.6E-05 41.0 3.0 25 200-225 259-283 (517)
180 PRK11524 putative methyltransf 72.6 7.4 0.00016 37.2 5.5 22 203-224 59-80 (284)
181 PF05185 PRMT5: PRMT5 arginine 71.1 2.1 4.5E-05 44.0 1.4 22 51-72 187-208 (448)
182 PF06859 Bin3: Bicoid-interact 69.8 3.5 7.6E-05 34.0 2.2 24 201-224 21-44 (110)
183 TIGR00095 RNA methyltransferas 68.7 4.3 9.3E-05 36.5 2.8 21 51-71 50-70 (189)
184 PRK13168 rumA 23S rRNA m(5)U19 68.4 4.8 0.0001 41.1 3.4 20 51-70 298-317 (443)
185 PF11968 DUF3321: Putative met 67.2 9.7 0.00021 35.3 4.7 94 50-227 51-152 (219)
186 PF07942 N2227: N2227-like pro 66.5 18 0.00039 34.6 6.6 64 201-288 179-242 (270)
187 COG0030 KsgA Dimethyladenosine 66.1 10 0.00022 36.1 4.8 52 51-106 31-94 (259)
188 PLN02589 caffeoyl-CoA O-methyl 65.5 11 0.00023 35.7 4.8 23 50-72 79-101 (247)
189 COG4122 Predicted O-methyltran 63.6 19 0.00041 33.4 6.0 23 50-72 59-81 (219)
190 COG1189 Predicted rRNA methyla 62.6 6.5 0.00014 36.9 2.7 68 204-289 158-225 (245)
191 KOG3115 Methyltransferase-like 60.6 4.2 9E-05 37.4 1.1 33 207-244 166-198 (249)
192 TIGR02085 meth_trns_rumB 23S r 59.4 8.9 0.00019 38.3 3.3 18 52-69 235-252 (374)
193 PRK04338 N(2),N(2)-dimethylgua 58.8 11 0.00023 38.0 3.8 61 13-97 29-89 (382)
194 KOG1271 Methyltransferases [Ge 58.7 10 0.00023 34.3 3.2 12 52-63 69-80 (227)
195 PRK13699 putative methylase; P 58.4 20 0.00043 33.3 5.2 21 204-224 52-72 (227)
196 TIGR00479 rumA 23S rRNA (uraci 58.0 9.5 0.00021 38.7 3.3 20 51-70 293-312 (431)
197 PF07757 AdoMet_MTase: Predict 56.4 10 0.00022 31.2 2.6 16 50-65 58-73 (112)
198 PRK10611 chemotaxis methyltran 56.0 14 0.00029 35.8 3.8 19 205-223 243-261 (287)
199 PRK05031 tRNA (uracil-5-)-meth 55.2 13 0.00028 37.0 3.7 19 52-70 208-226 (362)
200 TIGR02143 trmA_only tRNA (urac 54.8 11 0.00025 37.3 3.2 19 52-70 199-217 (353)
201 KOG3420 Predicted RNA methylas 52.0 9 0.0002 33.5 1.7 17 50-66 48-64 (185)
202 PRK00050 16S rRNA m(4)C1402 me 51.3 40 0.00086 32.7 6.2 29 201-229 213-241 (296)
203 KOG4589 Cell division protein 50.9 15 0.00032 33.5 2.9 22 51-72 70-91 (232)
204 PRK11760 putative 23S rRNA C24 49.3 15 0.00031 36.6 2.9 20 51-70 212-231 (357)
205 PHA03297 envelope glycoprotein 49.3 3 6.5E-05 36.0 -1.6 58 48-105 37-104 (185)
206 TIGR01444 fkbM_fam methyltrans 48.9 7.8 0.00017 32.3 0.8 17 53-69 1-17 (143)
207 COG2519 GCD14 tRNA(1-methylade 42.7 47 0.001 31.5 5.0 44 206-257 177-220 (256)
208 TIGR02987 met_A_Alw26 type II 40.5 27 0.00058 36.5 3.5 41 50-97 31-71 (524)
209 PF03962 Mnd1: Mnd1 family; I 40.4 19 0.00041 32.5 2.0 33 237-269 31-63 (188)
210 PF09445 Methyltransf_15: RNA 39.3 14 0.0003 32.7 0.9 20 53-72 2-21 (163)
211 COG5124 Protein predicted to b 38.3 24 0.00052 31.6 2.2 35 234-268 41-75 (209)
212 COG0275 Predicted S-adenosylme 38.0 39 0.00085 32.9 3.8 32 198-229 218-249 (314)
213 TIGR00730 conserved hypothetic 37.6 1.1E+02 0.0024 27.3 6.5 68 207-277 86-177 (178)
214 KOG1501 Arginine N-methyltrans 36.3 24 0.00052 36.2 2.1 34 37-70 53-86 (636)
215 KOG1269 SAM-dependent methyltr 36.3 76 0.0017 31.7 5.7 26 133-158 165-190 (364)
216 TIGR00006 S-adenosyl-methyltra 36.1 37 0.0008 33.1 3.4 29 201-229 217-245 (305)
217 COG4262 Predicted spermidine s 31.9 1.3E+02 0.0028 30.4 6.3 121 49-227 288-410 (508)
218 PF02167 Cytochrom_C1: Cytochr 30.2 50 0.0011 30.6 3.0 51 133-211 133-183 (219)
219 KOG1136 Predicted cleavage and 29.9 1.1E+02 0.0024 30.3 5.5 40 205-245 220-259 (501)
220 PF07091 FmrO: Ribosomal RNA m 29.8 23 0.00049 33.5 0.8 21 49-69 104-124 (251)
221 PF01795 Methyltransf_5: MraW 29.1 41 0.00088 32.9 2.4 28 201-228 218-245 (310)
222 KOG1661 Protein-L-isoaspartate 28.8 52 0.0011 30.5 2.9 18 52-69 84-101 (237)
223 PRK00050 16S rRNA m(4)C1402 me 28.3 39 0.00084 32.8 2.1 21 52-72 21-41 (296)
224 PF00398 RrnaAD: Ribosomal RNA 27.6 83 0.0018 29.6 4.2 23 50-72 30-52 (262)
225 COG4627 Uncharacterized protei 27.4 61 0.0013 28.7 2.9 25 203-227 65-89 (185)
226 smart00400 ZnF_CHCC zinc finge 27.4 46 0.001 23.4 1.9 21 52-72 22-42 (55)
227 PF02636 Methyltransf_28: Puta 27.4 55 0.0012 30.5 2.9 23 50-72 18-40 (252)
228 COG4798 Predicted methyltransf 26.9 91 0.002 28.7 4.0 21 52-72 50-70 (238)
229 TIGR00308 TRM1 tRNA(guanine-26 26.6 57 0.0012 32.7 3.0 64 14-97 14-77 (374)
230 COG4076 Predicted RNA methylas 26.4 35 0.00075 31.2 1.3 33 34-72 22-54 (252)
231 PF10357 Kin17_mid: Domain of 26.4 67 0.0014 27.2 2.9 74 188-287 10-83 (127)
232 PF01596 Methyltransf_3: O-met 26.2 35 0.00076 31.2 1.3 23 50-72 45-67 (205)
233 KOG0820 Ribosomal RNA adenine 26.1 1.8E+02 0.0039 28.2 6.0 52 49-101 57-120 (315)
234 KOG2920 Predicted methyltransf 25.5 34 0.00074 32.9 1.1 34 31-68 100-134 (282)
235 PF02268 TFIIA_gamma_N: Transc 25.5 92 0.002 21.9 3.0 21 234-254 11-31 (49)
236 PF09597 IGR: IGR protein moti 25.0 71 0.0015 23.1 2.4 27 193-219 13-39 (57)
237 PF10672 Methyltrans_SAM: S-ad 24.8 95 0.0021 30.0 4.1 28 200-227 214-241 (286)
238 KOG2798 Putative trehalase [Ca 24.8 2.6E+02 0.0057 27.6 7.0 68 202-292 274-341 (369)
239 PF01564 Spermine_synth: Sperm 24.0 1E+02 0.0022 28.9 4.0 24 205-228 172-195 (246)
240 PF14904 FAM86: Family of unkn 23.9 86 0.0019 25.4 3.0 31 316-346 67-99 (100)
241 PF09851 SHOCT: Short C-termin 23.4 64 0.0014 20.1 1.7 18 240-257 6-23 (31)
242 PF04672 Methyltransf_19: S-ad 22.4 2.2E+02 0.0047 27.3 5.9 55 26-96 46-102 (267)
243 PF04816 DUF633: Family of unk 22.4 36 0.00078 31.1 0.6 23 266-289 103-125 (205)
244 COG0144 Sun tRNA and rRNA cyto 22.1 7.7E+02 0.017 24.3 11.5 133 51-229 157-293 (355)
245 PLN02476 O-methyltransferase 21.9 99 0.0021 29.7 3.5 23 50-72 118-140 (278)
246 KOG4068 Uncharacterized conser 21.5 1.2E+02 0.0027 26.6 3.6 57 235-292 68-128 (174)
247 PF01189 Nol1_Nop2_Fmu: NOL1/N 21.5 1.9E+02 0.0041 27.6 5.4 24 204-227 195-222 (283)
248 PF02475 Met_10: Met-10+ like- 20.8 2E+02 0.0043 26.2 5.1 32 51-97 102-133 (200)
249 PRK05568 flavodoxin; Provision 20.7 2.3E+02 0.005 23.4 5.3 24 54-78 5-28 (142)
250 PF02375 JmjN: jmjN domain; I 20.2 44 0.00096 21.5 0.5 15 262-276 1-15 (34)
251 COG0293 FtsJ 23S rRNA methylas 20.1 1.2E+02 0.0026 27.8 3.5 23 50-72 45-67 (205)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=1.3e-97 Score=729.57 Aligned_cols=359 Identities=31% Similarity=0.485 Sum_probs=321.3
Q ss_pred CCccceeeccCCCCCchHHhhCHHHHHHHHHhHHHHHHHHHhhhcCCCC-CceEEeeecCCCCCCchHHHHHHHHHHHHH
Q 047625 1 MQVEQVLFMNGGEGDNSYAKNSAPPREAILKAKPLLHESLFDLYSNGFP-DCIRFTDMGCSSGPNAFLPTWQAIEALDTI 79 (368)
Q Consensus 1 ~~~~~~~~m~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~a~~~~~~~~~~-~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~ 79 (368)
|+++++|||+||+|++||++||.+|++++..++|+|+++|++++....+ ++++|||||||+|+||+.+|+.||++|+++
T Consensus 13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~ 92 (386)
T PLN02668 13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKR 92 (386)
T ss_pred ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999988654334 689999999999999999999999999999
Q ss_pred hhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhh-hhcc--CCCCCceeeeecCCCcccccCCCCccceEEccccc
Q 047625 80 CSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLK-TEKR--NDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCL 156 (368)
Q Consensus 80 ~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~-~~~~--~~~~~~~f~~~vp~SFy~~l~P~~sid~~~S~~al 156 (368)
|...+.++||+||||||||+||||+||++|+++.+.+. ...+ ....++||++|||||||+||||++|+||+||++||
T Consensus 93 ~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl 172 (386)
T PLN02668 93 YESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSL 172 (386)
T ss_pred hhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccc
Confidence 98877778899999999999999999999998765320 0000 01124699999999999999999999999999999
Q ss_pred ccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCC------c
Q 047625 157 NWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGNDK------H 230 (368)
Q Consensus 157 hWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~------e 230 (368)
||||++|+.+.|..+ +.||||+||++.++ ++|.+||++||++||..||++||+||+|||+||+++.||.+ +
T Consensus 173 HWLS~vP~~l~d~~s-~~~Nkg~iyi~~~s--~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~ 249 (386)
T PLN02668 173 HWLSQVPESVTDKRS-AAYNKGRVFIHGAS--ESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQG 249 (386)
T ss_pred eecccCchhhccCCc-ccccCCceEecCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCC
Confidence 999999999987764 89999999999885 89999999999999999999999999999999999999965 1
Q ss_pred -cchHHHH-HHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEEEeecCCCCCCCCcccchhhh
Q 047625 231 -HTGVFEL-MGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETSHISWSVGYENDDKGLEFNK 308 (368)
Q Consensus 231 -~~~~~~~-l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~~~~~~~~~~~~~~~~d~~~ 308 (368)
.+.+|+. +.++|++||.||+|++|++|+||+|+|+||++|++++|+++|+|+|+++|+++..|++ +.+.. .| .
T Consensus 250 ~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~-~~~~~--~d--~ 324 (386)
T PLN02668 250 GAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPL-VVNEP--DD--A 324 (386)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcc-cccCc--cc--H
Confidence 3345665 9999999999999999999999999999999999999999999999999999988865 33221 23 4
Q ss_pred hhhHHHHHHHHHHHHhhHHHhhhChHHHHHHHHHHHHHHHHhHhh--cCCCEEEEEEEEEe
Q 047625 309 HARAKNVANNIRAVSESLLANHFGSAIMDDLFHRFTIKISAHLEM--GLGAHTVLFIYLIK 367 (368)
Q Consensus 309 ~~~~~~~~~~ira~~~p~l~~~~~~~i~delf~r~~~~~~~~l~~--~~~~~~~~~~~l~r 367 (368)
...++.+++++||++||++.+|||++++|+||+||+++++++++. ++.++.+++++|.-
T Consensus 325 ~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~~~sL~~ 385 (386)
T PLN02668 325 AEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKELLEKLQFFHIVASLSF 385 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEEEEec
Confidence 567889999999999999999999999999999999999999988 88899999999864
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=1.2e-90 Score=676.89 Aligned_cols=322 Identities=46% Similarity=0.785 Sum_probs=271.3
Q ss_pred HHHHHHhhhc-CCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcC-CCCCcceEEecCCCCCchhhhhhcChhhH
Q 047625 36 LHESLFDLYS-NGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLK-HKPPILHAFLNDLPGNDFNTLSKSLPSFY 113 (368)
Q Consensus 36 l~~a~~~~~~-~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~-~~~p~~~v~~nDLp~NDfn~lf~~l~~~~ 113 (368)
|++||.+++. ...+++++|||||||+|+||+.+|+.||++|+++|++.+ +++|+|||||||||+||||+||++|+.+.
T Consensus 1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~ 80 (334)
T PF03492_consen 1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ 80 (334)
T ss_dssp -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence 5788888875 446789999999999999999999999999999998776 67789999999999999999999999998
Q ss_pred HHhhhhccCCCCCceeeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHH
Q 047625 114 ERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHK 193 (368)
Q Consensus 114 ~~~~~~~~~~~~~~~f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ 193 (368)
+++.. .++||++|||||||+||||++||||+||++||||||++|+.+.++++ ++||||+||+++++ |++|.+
T Consensus 81 ~~~~~------~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~-~~~Nkg~i~~~~~~-~~~v~~ 152 (334)
T PF03492_consen 81 QSLKK------FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSS-PAWNKGNIYISRTS-PPEVAK 152 (334)
T ss_dssp HHHHH------TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTS-TTTSTTTSSSSTTS--HHHHH
T ss_pred hccCC------CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccc-cccccCcEEEecCC-CHHHHH
Confidence 87765 27999999999999999999999999999999999999999999875 99999999999887 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCC------ccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCC
Q 047625 194 AYLDQFESDFTSFLNFRWEELKIGGRMILNFIGNDK------HHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPC 267 (368)
Q Consensus 194 ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~------e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps 267 (368)
||++||++||.+||++||+||+|||+||+.++|+++ +...+|+++.++|++||.+|+|+++++|+||+|+|+||
T Consensus 153 ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps 232 (334)
T PF03492_consen 153 AYAKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPS 232 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---
T ss_pred HHHHHHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCC
Confidence 999999999999999999999999999999999988 23468999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceeEeEEEEEeecCCCCCCC-CcccchhhhhhhHHHHHHHHHHHHhhHHHhhhChHHHHHHHHHHHHH
Q 047625 268 VEEVRQVIEREGSFNIHQLETSHISWSVGYEN-DDKGLEFNKHARAKNVANNIRAVSESLLANHFGSAIMDDLFHRFTIK 346 (368)
Q Consensus 268 ~~E~~~~l~~~GsF~I~~le~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~ira~~~p~l~~~~~~~i~delf~r~~~~ 346 (368)
++|++++|+++|+|+|+++|.++.+|.. ... .....| ...+++.+++++||+++|++.+|||++++|+||+||+++
T Consensus 233 ~eEv~~~I~~~gsF~I~~le~~~~~~~~-~~~~~~~~~d--~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~ 309 (334)
T PF03492_consen 233 PEEVRAIIEEEGSFEIEKLELFEQPWWS-VPDDESWKED--AKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKK 309 (334)
T ss_dssp HHHHHHHHHHHTSEEEEEEEEEEEETCC-TCTTT-STTT--HHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEEEEeecccc-cchhhhcccc--hhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 9999999999999999999999866543 221 111233 567899999999999999999999999999999999999
Q ss_pred HHHhHhhcC---CCEEEEEEEEEeC
Q 047625 347 ISAHLEMGL---GAHTVLFIYLIKK 368 (368)
Q Consensus 347 ~~~~l~~~~---~~~~~~~~~l~r~ 368 (368)
++++++.++ +++++++++|+||
T Consensus 310 v~~~~~~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 310 VAEHLEKEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HHHHHHHTHTT-BEEEEEEEEEEE-
T ss_pred HHHHHHHhhccCCCcEEEEEEEeeC
Confidence 999998776 8899999999998
No 3
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.56 E-value=2e-13 Score=128.66 Aligned_cols=244 Identities=14% Similarity=0.174 Sum_probs=147.3
Q ss_pred chHHhhCHHHHHHHHHhHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEec
Q 047625 16 NSYAKNSAPPREAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLN 95 (368)
Q Consensus 16 ~sY~~nS~~Q~~~~~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~n 95 (368)
..|.+++..|.+....++..+. .....+|+|+|||+|..+..+.+.. |..+|+-.
T Consensus 7 ~~Y~~~~~~~~~~~~~ll~~~~----------~~~~~~vLDiGcG~G~~~~~la~~~---------------~~~~v~gv 61 (258)
T PRK01683 7 SLYLKFEDERTRPARDLLARVP----------LENPRYVVDLGCGPGNSTELLVERW---------------PAARITGI 61 (258)
T ss_pred HHHHHHHHHhhcHHHHHHhhCC----------CcCCCEEEEEcccCCHHHHHHHHHC---------------CCCEEEEE
Confidence 5799988888776655443221 1235799999999998887665432 33678877
Q ss_pred CCCCCchhhhhhcChhhHHHhhhhccCCCCCc-eeeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCC
Q 047625 96 DLPGNDFNTLSKSLPSFYERLKTEKRNDDFGS-CFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPL 174 (368)
Q Consensus 96 DLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~-~f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~ 174 (368)
|+.. +.-...+.. .++ -|..+ ++ ..+.|++++|+++|+.++||+.+.
T Consensus 62 D~s~-~~i~~a~~~---------------~~~~~~~~~---d~-~~~~~~~~fD~v~~~~~l~~~~d~------------ 109 (258)
T PRK01683 62 DSSP-AMLAEARSR---------------LPDCQFVEA---DI-ASWQPPQALDLIFANASLQWLPDH------------ 109 (258)
T ss_pred ECCH-HHHHHHHHh---------------CCCCeEEEC---ch-hccCCCCCccEEEEccChhhCCCH------------
Confidence 8731 111111100 011 12222 22 234577899999999999996321
Q ss_pred cCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchh
Q 047625 175 LNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEES 254 (368)
Q Consensus 175 ~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e 254 (368)
..+|+.-.+.|+|||++++++.+...+ .... .++++.....+...
T Consensus 110 -----------------------------~~~l~~~~~~LkpgG~~~~~~~~~~~~--~~~~----~~~~~~~~~~w~~~ 154 (258)
T PRK01683 110 -----------------------------LELFPRLVSLLAPGGVLAVQMPDNLDE--PSHV----LMREVAENGPWEQN 154 (258)
T ss_pred -----------------------------HHHHHHHHHhcCCCcEEEEECCCCCCC--HHHH----HHHHHHccCchHHH
Confidence 125677888999999999986443221 1111 12222222212211
Q ss_pred hhccCCcccccCCHHHHHHHHHhcCceeEeEEEEEeecCCCCCCCCcccchhhhhhhHHHHHHHHHHHH-hhHHHhhhCh
Q 047625 255 KLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETSHISWSVGYENDDKGLEFNKHARAKNVANNIRAVS-ESLLANHFGS 333 (368)
Q Consensus 255 ~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ira~~-~p~l~~~~~~ 333 (368)
....-..+.++++++++...+...| +.++..+... +. + +. ....+..|++++. .+++ .++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~-~~-~-~~------------~~~~~~~~~~~~~~~~~~-~~l~~ 217 (258)
T PRK01683 155 LPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTY-YH-P-MP------------SAQAIVEWVKGTGLRPFL-DPLTE 217 (258)
T ss_pred hccccccCcCCCCHHHHHHHHHhCC-Cceeeeeeee-ee-e-cC------------CchhhhhhhhhccHHHHH-hhCCH
Confidence 1111123457789999999999999 7765544321 11 1 21 1346777888764 6776 67999
Q ss_pred HHHHHHHHHHHHHHHHhHh-hc----CCCEEEEEEEEEeC
Q 047625 334 AIMDDLFHRFTIKISAHLE-MG----LGAHTVLFIYLIKK 368 (368)
Q Consensus 334 ~i~delf~r~~~~~~~~l~-~~----~~~~~~~~~~l~r~ 368 (368)
+..++|.++|.+.+.+... .. ...|..++++-+|+
T Consensus 218 ~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (258)
T PRK01683 218 SEQAAFLAAYLARIAEAYPLQADGKVLLAFPRLFIVARRK 257 (258)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCcEEcccceEEEEEEec
Confidence 9999999999999987642 22 24566667766653
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=3.3e-13 Score=127.31 Aligned_cols=226 Identities=12% Similarity=0.123 Sum_probs=137.9
Q ss_pred chHHhhCHHHHHHHHHhHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEec
Q 047625 16 NSYAKNSAPPREAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLN 95 (368)
Q Consensus 16 ~sY~~nS~~Q~~~~~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~n 95 (368)
..|.+++..|.+....++..+. .....+|+|+|||+|..+..+.... |..+|+--
T Consensus 5 ~~y~~~~~~~~~~~~~ll~~l~----------~~~~~~vLDlGcG~G~~~~~l~~~~---------------p~~~v~gv 59 (255)
T PRK14103 5 DVYLAFADHRGRPFYDLLARVG----------AERARRVVDLGCGPGNLTRYLARRW---------------PGAVIEAL 59 (255)
T ss_pred HHHHHHHhHhhCHHHHHHHhCC----------CCCCCEEEEEcCCCCHHHHHHHHHC---------------CCCEEEEE
Confidence 5799999999877755444322 1235899999999997766543321 33567777
Q ss_pred CCCCCchhhhhhcChhhHHHhhhhccCCCCCceeeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCc
Q 047625 96 DLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLL 175 (368)
Q Consensus 96 DLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~ 175 (368)
|+-. +.-...+. . +--| +.+.+ +.+.|++++|+++|..++||+.+.
T Consensus 60 D~s~-~~~~~a~~-----------~-----~~~~---~~~d~-~~~~~~~~fD~v~~~~~l~~~~d~------------- 105 (255)
T PRK14103 60 DSSP-EMVAAARE-----------R-----GVDA---RTGDV-RDWKPKPDTDVVVSNAALQWVPEH------------- 105 (255)
T ss_pred ECCH-HHHHHHHh-----------c-----CCcE---EEcCh-hhCCCCCCceEEEEehhhhhCCCH-------------
Confidence 7621 11111110 0 1112 22333 345678899999999999996431
Q ss_pred CcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhh
Q 047625 176 NKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESK 255 (368)
Q Consensus 176 nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~ 255 (368)
..+|+.-++.|||||++++.+.+... ...... +..+...+-+....
T Consensus 106 ----------------------------~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~----~~~~~~~~~w~~~~ 151 (255)
T PRK14103 106 ----------------------------ADLLVRWVDELAPGSWIAVQVPGNFD--APSHAA----VRALARREPWAKLL 151 (255)
T ss_pred ----------------------------HHHHHHHHHhCCCCcEEEEEcCCCcC--ChhHHH----HHHHhccCchhHHh
Confidence 12466678889999999999866422 111111 12221111111110
Q ss_pred h-ccCCcccccCCHHHHHHHHHhcCceeEeEEEEEeecCCCCCCCCcccchhhhhhhHHHHHHHHHHHH-hhHHHhhhCh
Q 047625 256 L-ESFNYPIYYPCVEEVRQVIEREGSFNIHQLETSHISWSVGYENDDKGLEFNKHARAKNVANNIRAVS-ESLLANHFGS 333 (368)
Q Consensus 256 ~-d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ira~~-~p~l~~~~~~ 333 (368)
- ..+..+..+.+++++.++|++.| |++...+..... + +. ....+..|+++.. .+++ +.+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~--~-~~------------~~~~~~~~~~~~~~~~~~-~~l~~ 214 (255)
T PRK14103 152 RDIPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVH--Q-LT------------GEDPVLDWITGTALRPVR-ERLSD 214 (255)
T ss_pred cccccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeee--e-CC------------Cchhhhhhhhccchhhhh-hhCCH
Confidence 0 01233556789999999999999 987765543221 1 11 1235777888654 5677 46999
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 047625 334 AIMDDLFHRFTIKISAHL 351 (368)
Q Consensus 334 ~i~delf~r~~~~~~~~l 351 (368)
+.++++.+.+.+.+++.+
T Consensus 215 ~~~~~~~~~~~~~l~~~~ 232 (255)
T PRK14103 215 DSWEQFRAELIPLLREAY 232 (255)
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 999999999999888764
No 5
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.39 E-value=1.1e-11 Score=116.46 Aligned_cols=229 Identities=9% Similarity=0.153 Sum_probs=138.2
Q ss_pred chHHhhCHHHHHHHHHhHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEec
Q 047625 16 NSYAKNSAPPREAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLN 95 (368)
Q Consensus 16 ~sY~~nS~~Q~~~~~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~n 95 (368)
.+|++++..|+.+...+...+.. ...-+|+|+|||+|.++..+. +. ..+++-.
T Consensus 18 ~~Y~~~~~~q~~~a~~l~~~l~~----------~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~~ 70 (251)
T PRK10258 18 AHYEQHAELQRQSADALLAMLPQ----------RKFTHVLDAGCGPGWMSRYWR--------ER---------GSQVTAL 70 (251)
T ss_pred HhHhHHHHHHHHHHHHHHHhcCc----------cCCCeEEEeeCCCCHHHHHHH--------Hc---------CCeEEEE
Confidence 57998889999888776655431 234689999999997765441 11 2567777
Q ss_pred CCCCCchhhhhhcChhhHHHhhhhccCCCCCceeeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCc
Q 047625 96 DLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLL 175 (368)
Q Consensus 96 DLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~ 175 (368)
|+-. +.-...+. .. . ...|+ .+.+..-.+|++++|+++|+.++||..+.
T Consensus 71 D~s~-~~l~~a~~-----------~~-~--~~~~~---~~d~~~~~~~~~~fD~V~s~~~l~~~~d~------------- 119 (251)
T PRK10258 71 DLSP-PMLAQARQ-----------KD-A--ADHYL---AGDIESLPLATATFDLAWSNLAVQWCGNL------------- 119 (251)
T ss_pred ECCH-HHHHHHHh-----------hC-C--CCCEE---EcCcccCcCCCCcEEEEEECchhhhcCCH-------------
Confidence 7721 11000000 00 0 11232 23333334788899999999999995432
Q ss_pred CcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhh
Q 047625 176 NKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESK 255 (368)
Q Consensus 176 nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~ 255 (368)
..+|+.-.+-|+|||++++.+++.++ +.-+.++|..+ ++
T Consensus 120 ----------------------------~~~l~~~~~~Lk~gG~l~~~~~~~~~-----~~el~~~~~~~--~~------ 158 (251)
T PRK10258 120 ----------------------------STALRELYRVVRPGGVVAFTTLVQGS-----LPELHQAWQAV--DE------ 158 (251)
T ss_pred ----------------------------HHHHHHHHHHcCCCeEEEEEeCCCCc-----hHHHHHHHHHh--cc------
Confidence 22567778999999999999999887 22234455432 11
Q ss_pred hccCCcccccCCHHHHHHHHHhcCceeEeEEEEEeecCCCCCCCCcccchhhhhhhHHHHHHHHHHHHhhHHH-----hh
Q 047625 256 LESFNYPIYYPCVEEVRQVIEREGSFNIHQLETSHISWSVGYENDDKGLEFNKHARAKNVANNIRAVSESLLA-----NH 330 (368)
Q Consensus 256 ~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ira~~~p~l~-----~~ 330 (368)
.....-|++.+|+...+...| +.+ ..+.+...+ . .+..+...+|......+. ..
T Consensus 159 ---~~~~~~~~~~~~l~~~l~~~~-~~~-~~~~~~~~f----~------------~~~~~l~~lk~~G~~~~~~~~~~~~ 217 (251)
T PRK10258 159 ---RPHANRFLPPDAIEQALNGWR-YQH-HIQPITLWF----D------------DALSAMRSLKGIGATHLHEGRDPRI 217 (251)
T ss_pred ---CCccccCCCHHHHHHHHHhCC-cee-eeeEEEEEC----C------------CHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 112335778999999998776 554 344444433 1 244677788877664432 23
Q ss_pred hChHHHHHHHHHHHHHHHHhHhhcCCCEEEEEEEEEeC
Q 047625 331 FGSAIMDDLFHRFTIKISAHLEMGLGAHTVLFIYLIKK 368 (368)
Q Consensus 331 ~~~~i~delf~r~~~~~~~~l~~~~~~~~~~~~~l~r~ 368 (368)
++...+.++.+.| ...-...+..|-.+|.++.|.
T Consensus 218 ~~~~~~~~~~~~~----~~~~g~~~lty~v~~~~~~~~ 251 (251)
T PRK10258 218 LTRSQLQRLQLAW----PQQQGRYPLTYHLFLGVIERD 251 (251)
T ss_pred CcHHHHHHHHHhc----cccCCCcceEEEEEEEEEEcC
Confidence 4444444444444 222223467888888887763
No 6
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.38 E-value=1.4e-11 Score=113.49 Aligned_cols=217 Identities=16% Similarity=0.263 Sum_probs=135.4
Q ss_pred CchHHhhCHHHHHHHHHhHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEe
Q 047625 15 DNSYAKNSAPPREAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFL 94 (368)
Q Consensus 15 ~~sY~~nS~~Q~~~~~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~ 94 (368)
..+|.+.+..|+.+...+.+.+.... ...+.+|+|+|||+|..+..+.... |..+++.
T Consensus 6 ~~~y~~~~~~q~~~~~~l~~~~~~~~-------~~~~~~vLDlG~G~G~~~~~l~~~~---------------~~~~~~~ 63 (240)
T TIGR02072 6 AKTYDRHAKIQREMAKRLLALLKEKG-------IFIPASVLDIGCGTGYLTRALLKRF---------------PQAEFIA 63 (240)
T ss_pred hhchhHHHHHHHHHHHHHHHHhhhhc-------cCCCCeEEEECCCccHHHHHHHHhC---------------CCCcEEE
Confidence 46799999999988888777766321 1235789999999998776654432 3466777
Q ss_pred cCCCCCchhhhhhcChhhHHHhhhhccCCCCCceeeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCC
Q 047625 95 NDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPL 174 (368)
Q Consensus 95 nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~ 174 (368)
.|+.....+..-+.+. . +-.| +-+++.+..+|++++|++++..++||+..
T Consensus 64 ~D~~~~~~~~~~~~~~------------~--~~~~---~~~d~~~~~~~~~~fD~vi~~~~l~~~~~------------- 113 (240)
T TIGR02072 64 LDISAGMLAQAKTKLS------------E--NVQF---ICGDAEKLPLEDSSFDLIVSNLALQWCDD------------- 113 (240)
T ss_pred EeChHHHHHHHHHhcC------------C--CCeE---EecchhhCCCCCCceeEEEEhhhhhhccC-------------
Confidence 7773222111111111 0 1122 33444556678899999999999999632
Q ss_pred cCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchh
Q 047625 175 LNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEES 254 (368)
Q Consensus 175 ~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e 254 (368)
...+|+...+.|+|||++++..++.+. + ..+...+..
T Consensus 114 ----------------------------~~~~l~~~~~~L~~~G~l~~~~~~~~~----~-~~~~~~~~~---------- 150 (240)
T TIGR02072 114 ----------------------------LSQALSELARVLKPGGLLAFSTFGPGT----L-HELRQSFGQ---------- 150 (240)
T ss_pred ----------------------------HHHHHHHHHHHcCCCcEEEEEeCCccC----H-HHHHHHHHH----------
Confidence 123678889999999999999887766 2 112222211
Q ss_pred hhccCCcccccCCHHHHHHHHHhcCceeEeEEEEEeecCCCCCCCCcccchhhhhhhHHHHHHHHHHHHhhHH-HhhhCh
Q 047625 255 KLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETSHISWSVGYENDDKGLEFNKHARAKNVANNIRAVSESLL-ANHFGS 333 (368)
Q Consensus 255 ~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ira~~~p~l-~~~~~~ 333 (368)
....+++.+++.+++++. |....++....+.. +. ....+..++|....... ...++.
T Consensus 151 ------~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~--~~------------~~~~~~~~l~~~g~~~~~~~~~~~ 208 (240)
T TIGR02072 151 ------HGLRYLSLDELKALLKNS--FELLTLEEELITLS--FD------------DPLDVLRHLKKTGANGLSSGRTSR 208 (240)
T ss_pred ------hccCCCCHHHHHHHHHHh--cCCcEEEEEEEEEe--CC------------CHHHHHHHHHHhccCcCCCCCCCH
Confidence 112567899999999875 77666554433321 11 23457777777655332 233566
Q ss_pred HHHHHHHHHHHHHHH
Q 047625 334 AIMDDLFHRFTIKIS 348 (368)
Q Consensus 334 ~i~delf~r~~~~~~ 348 (368)
+.+.++.+.|.+...
T Consensus 209 ~~~~~~~~~~~~~~~ 223 (240)
T TIGR02072 209 KQLKAFLERYEQEFQ 223 (240)
T ss_pred HHHHHHHHHHHHhhc
Confidence 666777777766553
No 7
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.04 E-value=2.8e-09 Score=96.69 Aligned_cols=220 Identities=15% Similarity=0.141 Sum_probs=130.5
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
.+.+|.|||||.|.-|.++.+.. |.-++.=-|- ..+.+.+... .-++--|
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~Rw---------------P~A~i~GiDs--------------S~~Mla~Aa~-rlp~~~f 79 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRW---------------PDAVITGIDS--------------SPAMLAKAAQ-RLPDATF 79 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhC---------------CCCeEeeccC--------------CHHHHHHHHH-hCCCCce
Confidence 46899999999999888887654 3233332222 0111111110 0001112
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
.-|. ....-|+...|+++|.-+||||.+-|.. |..
T Consensus 80 ~~aD----l~~w~p~~~~dllfaNAvlqWlpdH~~l-----------------------------------------l~r 114 (257)
T COG4106 80 EEAD----LRTWKPEQPTDLLFANAVLQWLPDHPEL-----------------------------------------LPR 114 (257)
T ss_pred eccc----HhhcCCCCccchhhhhhhhhhccccHHH-----------------------------------------HHH
Confidence 1121 2456789999999999999997665553 344
Q ss_pred HHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCC-cccccCCHHHHHHHHHhcCceeEeEEEE
Q 047625 210 RWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFN-YPIYYPCVEEVRQVIEREGSFNIHQLET 288 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~-~P~y~ps~~E~~~~l~~~GsF~I~~le~ 288 (368)
--.+|.|||.|.+.|++--.+. ....+++.++++-+..+ +..+. .----+++..|-++|...+ =+|+--++
T Consensus 115 L~~~L~Pgg~LAVQmPdN~dep------sH~~mr~~A~~~p~~~~-l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T 186 (257)
T COG4106 115 LVSQLAPGGVLAVQMPDNLDEP------SHRLMRETADEAPFAQE-LGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHT 186 (257)
T ss_pred HHHhhCCCceEEEECCCccCch------hHHHHHHHHhcCchhhh-hCccccccCCCCCHHHHHHHhCccc-ceeeeeee
Confidence 5568999999999996443321 12223343333322222 21111 1223578999999998766 34433332
Q ss_pred EeecCCCCCCCCcccchhhhhhhHHHHHHHHHHHHh-hHHHhhhChHHHHHHHHHHHHHHHHhH-hhcC----CCEEEEE
Q 047625 289 SHISWSVGYENDDKGLEFNKHARAKNVANNIRAVSE-SLLANHFGSAIMDDLFHRFTIKISAHL-EMGL----GAHTVLF 362 (368)
Q Consensus 289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ira~~~-p~l~~~~~~~i~delf~r~~~~~~~~l-~~~~----~~~~~~~ 362 (368)
.-. .+.. .+..+..|+|+..- |++. .++++-...|.++|..++.+.+ ...+ ..|.-+|
T Consensus 187 ~Y~---h~l~------------~a~aIvdWvkgTgLrP~L~-~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlF 250 (257)
T COG4106 187 TYY---HQLP------------GADAIVDWVKGTGLRPYLD-RLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLF 250 (257)
T ss_pred ecc---ccCC------------Cccchhhheeccccceecc-ccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEE
Confidence 211 1011 23479999998876 8884 4999999999999999998754 2222 3455666
Q ss_pred EEEEeC
Q 047625 363 IYLIKK 368 (368)
Q Consensus 363 ~~l~r~ 368 (368)
|+-+|+
T Consensus 251 iVA~~~ 256 (257)
T COG4106 251 IVATRG 256 (257)
T ss_pred EEEecC
Confidence 666653
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.94 E-value=4.1e-08 Score=93.27 Aligned_cols=195 Identities=15% Similarity=0.141 Sum_probs=109.7
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
...+|+|+|||+|..+..+... ...+|+--|+.. +.....+... . .. .+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~----------------~~~~v~giD~s~-~~~~~a~~~~------~-----~~-~~-- 100 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEK----------------YGAHVHGVDICE-KMVNIAKLRN------S-----DK-NK-- 100 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhh----------------cCCEEEEEECCH-HHHHHHHHHc------C-----cC-Cc--
Confidence 3479999999999987655321 115677777632 1111111100 0 00 11
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
+..+.+++.+.-+|++++|+++|..++++++ . .|...+|+.
T Consensus 101 i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~---~------------------------------------~d~~~~l~~ 141 (263)
T PTZ00098 101 IEFEANDILKKDFPENTFDMIYSRDAILHLS---Y------------------------------------ADKKKLFEK 141 (263)
T ss_pred eEEEECCcccCCCCCCCeEEEEEhhhHHhCC---H------------------------------------HHHHHHHHH
Confidence 1223455566668899999999988876532 1 134457888
Q ss_pred HHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEEE
Q 047625 210 RWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETS 289 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~ 289 (368)
-++-|||||++++.-....+ .....+. +....... .+.++++++|.++++++| |++...+-.
T Consensus 142 i~r~LkPGG~lvi~d~~~~~-~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~l~~aG-F~~v~~~d~ 203 (263)
T PTZ00098 142 CYKWLKPNGILLITDYCADK-IENWDEE----FKAYIKKR------------KYTLIPIQEYGDLIKSCN-FQNVVAKDI 203 (263)
T ss_pred HHHHcCCCcEEEEEEecccc-ccCcHHH----HHHHHHhc------------CCCCCCHHHHHHHHHHCC-CCeeeEEeC
Confidence 99999999999998776554 1111111 11211111 124579999999999999 997666532
Q ss_pred eecCCCCCCCCcccchhhhhhhHHHHHHHHHHHHhhHHHhhhChHHHHHHHHHHHHHHH
Q 047625 290 HISWSVGYENDDKGLEFNKHARAKNVANNIRAVSESLLANHFGSAIMDDLFHRFTIKIS 348 (368)
Q Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ira~~~p~l~~~~~~~i~delf~r~~~~~~ 348 (368)
...|. ..+. .+..-+++- +.-+...+|++-.+.+-.-+...+.
T Consensus 204 ~~~~~--------------~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 204 SDYWL--------------ELLQ-VELKKLEEK-KEEFLKLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred cHHHH--------------HHHH-HHHHHHHHh-HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 21111 0111 222222222 2333355777766666666655553
No 9
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.88 E-value=4.2e-08 Score=91.60 Aligned_cols=164 Identities=15% Similarity=0.191 Sum_probs=96.0
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
...+|+|+|||+|.++..+.+.+ ..|..+++--|+-. +.-...+. .... .+ .. .+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~-~ml~~a~~------~~~~-~~-~~-~~-- 107 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQ-PMVERCRQ------HIAA-YH-SE-IP-- 107 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-HHHHHHHH------HHHh-cC-CC-CC--
Confidence 34689999999998877766543 12447777777721 21111111 1110 00 00 11
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
+..+.+++.+--+ .+.|++++.+++||++. . |...+|+.
T Consensus 108 v~~~~~d~~~~~~--~~~d~v~~~~~l~~~~~--~-------------------------------------~~~~~l~~ 146 (239)
T TIGR00740 108 VEILCNDIRHVEI--KNASMVILNFTLQFLPP--E-------------------------------------DRIALLTK 146 (239)
T ss_pred eEEEECChhhCCC--CCCCEEeeecchhhCCH--H-------------------------------------HHHHHHHH
Confidence 1224455554333 35789999999999632 1 23347888
Q ss_pred HHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHH-cCCCchhhh----ccCCcccccCCHHHHHHHHHhcCcee
Q 047625 210 RWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVY-EGLIEESKL----ESFNYPIYYPCVEEVRQVIEREGSFN 282 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~-eGli~~e~~----d~f~~P~y~ps~~E~~~~l~~~GsF~ 282 (368)
-.+.|+|||++++.-....+ .......+.+.+..+.. .| .+.+++ +.+.......|++|+.++++++| |+
T Consensus 147 i~~~LkpgG~l~i~d~~~~~-~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 147 IYEGLNPNGVLVLSEKFRFE-DTKINHLLIDLHHQFKRANG-YSELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred HHHhcCCCeEEEEeecccCC-CHhHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 99999999999998654443 11222333344444333 34 454433 22233445679999999999999 76
No 10
>PRK08317 hypothetical protein; Provisional
Probab=98.87 E-value=3.3e-07 Score=84.17 Aligned_cols=219 Identities=18% Similarity=0.110 Sum_probs=115.4
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
...+|+|+|||+|..+..+.... .|..+++--|+-..-. ..-+.. .. . .....-|
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~-~~a~~~-------~~--~-~~~~~~~ 73 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAML-ALAKER-------AA--G-LGPNVEF 73 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHH-HHHHHH-------hh--C-CCCceEE
Confidence 35799999999998777665433 1335677777631100 000000 00 0 0001122
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
.. +.+...-++++++|++++..++||+.+. ..+|+.
T Consensus 74 ~~---~d~~~~~~~~~~~D~v~~~~~~~~~~~~-----------------------------------------~~~l~~ 109 (241)
T PRK08317 74 VR---GDADGLPFPDGSFDAVRSDRVLQHLEDP-----------------------------------------ARALAE 109 (241)
T ss_pred Ee---cccccCCCCCCCceEEEEechhhccCCH-----------------------------------------HHHHHH
Confidence 22 2333334678899999999999996431 225677
Q ss_pred HHHHhccCceEEEEeecCCC-ccch-HHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEE
Q 047625 210 RWEELKIGGRMILNFIGNDK-HHTG-VFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLE 287 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g~~~-e~~~-~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le 287 (368)
..+.|+|||++++.....+. .... -...+...+..+... +.. ..+..++...++++| |.+..++
T Consensus 110 ~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~l~~aG-f~~~~~~ 175 (241)
T PRK08317 110 IARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDH----------FAD---PWLGRRLPGLFREAG-LTDIEVE 175 (241)
T ss_pred HHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhc----------CCC---CcHHHHHHHHHHHcC-CCceeEE
Confidence 88899999999998754322 0000 011122222221111 111 123568999999999 9988887
Q ss_pred EEeecCCCCCCCCcccchhhhhhhHHHHHHHHHHHHhhHHHhhhChHHHHHHHHHHHHHHHHhHhhcCC-CEEEEEEEEE
Q 047625 288 TSHISWSVGYENDDKGLEFNKHARAKNVANNIRAVSESLLANHFGSAIMDDLFHRFTIKISAHLEMGLG-AHTVLFIYLI 366 (368)
Q Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ira~~~p~l~~~~~~~i~delf~r~~~~~~~~l~~~~~-~~~~~~~~l~ 366 (368)
.+...... +.. ......+..+++.+.+ ...+.++-++++++.+++... .... -+.+++++..
T Consensus 176 ~~~~~~~~-~~~---------~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~ 238 (241)
T PRK08317 176 PYTLIETD-LKE---------ADKGFGLIRAARRAVE---AGGISADEADAWLADLAQLAR----AGEFFFSVTGFLVVG 238 (241)
T ss_pred EEEEeccC-cch---------hhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHh----cCCEEEEEEEEEEEE
Confidence 77654322 211 1122233334443322 122345667777777766443 2222 2456666665
Q ss_pred eC
Q 047625 367 KK 368 (368)
Q Consensus 367 r~ 368 (368)
||
T Consensus 239 ~k 240 (241)
T PRK08317 239 RK 240 (241)
T ss_pred eC
Confidence 54
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.85 E-value=8.9e-09 Score=95.29 Aligned_cols=167 Identities=14% Similarity=0.192 Sum_probs=95.3
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
.-+|+|+|||+|..+..+.+.+ .|..+++--|+.. ..-...+. .... . ...++
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~-~~~~~a~~------~~~~-~---~~~~v-- 98 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAV--------------GPEGHVIGLDFSE-NMLSVGRQ------KVKD-A---GLHNV-- 98 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHHH------HHHh-c---CCCce--
Confidence 4799999999998777665443 1345777777731 11111111 1100 0 01121
Q ss_pred eecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFR 210 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~R 210 (368)
..+.+...+-.+|++++|++++..++||++.. ..+|+..
T Consensus 99 ~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-----------------------------------------~~~l~~~ 137 (231)
T TIGR02752 99 ELVHGNAMELPFDDNSFDYVTIGFGLRNVPDY-----------------------------------------MQVLREM 137 (231)
T ss_pred EEEEechhcCCCCCCCccEEEEecccccCCCH-----------------------------------------HHHHHHH
Confidence 12333444444688999999999999995421 1256777
Q ss_pred HHHhccCceEEEEeecCCCccchHHHHHH-------HHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeE
Q 047625 211 WEELKIGGRMILNFIGNDKHHTGVFELMG-------MVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNI 283 (368)
Q Consensus 211 a~ELkpGG~lvl~~~g~~~e~~~~~~~l~-------~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I 283 (368)
.+-|+|||++++.-.+..+ ...+..... ..+......+..+...+. ..-..+++.+|+++.+++.| |++
T Consensus 138 ~~~Lk~gG~l~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aG-f~~ 213 (231)
T TIGR02752 138 YRVVKPGGKVVCLETSQPT-IPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ--ESTRDFPGMDELAEMFQEAG-FKD 213 (231)
T ss_pred HHHcCcCeEEEEEECCCCC-ChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH--HHHHHcCCHHHHHHHHHHcC-CCe
Confidence 8899999999988776665 211111111 111111111100000000 11236889999999999999 998
Q ss_pred eEEEEE
Q 047625 284 HQLETS 289 (368)
Q Consensus 284 ~~le~~ 289 (368)
.+++.+
T Consensus 214 ~~~~~~ 219 (231)
T TIGR02752 214 VEVKSY 219 (231)
T ss_pred eEEEEc
Confidence 877654
No 12
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.82 E-value=4.5e-08 Score=92.90 Aligned_cols=166 Identities=19% Similarity=0.227 Sum_probs=89.2
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCce-e
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSC-F 129 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~-f 129 (368)
..+|+|+|||+|..+..+...+ .|.-+|+--|+-. +.-...+. +...... ....++ |
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~--------------~~~~~V~gvD~S~-~ml~~A~~------r~~~~~~-~~~~~i~~ 131 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKV--------------GSDGKVMGLDFSS-EQLAVAAS------RQELKAK-SCYKNIEW 131 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHHH------Hhhhhhh-ccCCCeEE
Confidence 5799999999998766554332 1234566666521 11111110 0000000 000121 2
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
+. ++..+--+|++|+|++++++++||+.+. ..+|+.
T Consensus 132 ~~---~d~~~lp~~~~sfD~V~~~~~l~~~~d~-----------------------------------------~~~l~e 167 (261)
T PLN02233 132 IE---GDATDLPFDDCYFDAITMGYGLRNVVDR-----------------------------------------LKAMQE 167 (261)
T ss_pred EE---cccccCCCCCCCEeEEEEecccccCCCH-----------------------------------------HHHHHH
Confidence 22 2333334788999999999999995421 225788
Q ss_pred HHHHhccCceEEEEeecCCCccc---hHHHHH-HHHHHHHH-HcCCCchhhhccC-CcccccCCHHHHHHHHHhcCceeE
Q 047625 210 RWEELKIGGRMILNFIGNDKHHT---GVFELM-GMVLNDMV-YEGLIEESKLESF-NYPIYYPCVEEVRQVIEREGSFNI 283 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g~~~e~~---~~~~~l-~~al~~l~-~eGli~~e~~d~f-~~P~y~ps~~E~~~~l~~~GsF~I 283 (368)
-++-|||||++++..+++.+ .. .++... ...+.-+. .-|. . +.+... ..=-.|++++|+.+.+++.| |++
T Consensus 168 i~rvLkpGG~l~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~y~~l~~s~~~f~s~~el~~ll~~aG-F~~ 243 (261)
T PLN02233 168 MYRVLKPGSRVSILDFNKST-QPFTTSMQEWMIDNVVVPVATGYGL-A-KEYEYLKSSINEYLTGEELEKLALEAG-FSS 243 (261)
T ss_pred HHHHcCcCcEEEEEECCCCC-cHHHHHHHHHHHhhhhhHHHHHhCC-h-HHHHHHHHHHHhcCCHHHHHHHHHHCC-CCE
Confidence 88999999999999888766 11 111111 00010000 0021 0 100000 00013789999999999999 987
Q ss_pred eEE
Q 047625 284 HQL 286 (368)
Q Consensus 284 ~~l 286 (368)
...
T Consensus 244 ~~~ 246 (261)
T PLN02233 244 AKH 246 (261)
T ss_pred EEE
Confidence 654
No 13
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.82 E-value=1.4e-08 Score=99.31 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=90.2
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
.-+|+|+|||+|..++.+... .+ -.|+--| |+..+...++.... .. + .. .++-
T Consensus 123 g~~VLDIGCG~G~~~~~la~~---------------g~-~~V~GiD-~S~~~l~q~~a~~~----~~---~-~~-~~i~- 175 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGA---------------GA-KLVVGID-PSQLFLCQFEAVRK----LL---G-ND-QRAH- 175 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHc---------------CC-CEEEEEc-CCHHHHHHHHHHHH----hc---C-CC-CCeE-
Confidence 369999999999888755322 13 2466566 33233222221110 00 0 00 1222
Q ss_pred eecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFR 210 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~R 210 (368)
.+++++.+ +-.++++|+++|..++||... ...+|+.-
T Consensus 176 -~~~~d~e~-lp~~~~FD~V~s~~vl~H~~d-----------------------------------------p~~~L~~l 212 (322)
T PRK15068 176 -LLPLGIEQ-LPALKAFDTVFSMGVLYHRRS-----------------------------------------PLDHLKQL 212 (322)
T ss_pred -EEeCCHHH-CCCcCCcCEEEECChhhccCC-----------------------------------------HHHHHHHH
Confidence 23334332 222789999999999988432 12367888
Q ss_pred HHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEEE
Q 047625 211 WEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETS 289 (368)
Q Consensus 211 a~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~ 289 (368)
++.|+|||++++.....+.+.... ++..+.+..+...++.||.+++..+++++| |++.+++..
T Consensus 213 ~~~LkpGG~lvl~~~~i~~~~~~~---------------l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~~ 275 (322)
T PRK15068 213 KDQLVPGGELVLETLVIDGDENTV---------------LVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVDV 275 (322)
T ss_pred HHhcCCCcEEEEEEEEecCCCccc---------------cCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEeC
Confidence 899999999999876443311000 011112223444567799999999999999 998777543
No 14
>PLN02244 tocopherol O-methyltransferase
Probab=98.81 E-value=1.1e-07 Score=93.69 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=87.5
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
...+|+|+|||+|.++..+.+.. ..+|+--|+-.+ .-...+.. . ...+ ...+-.|
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~----------------g~~v~gvD~s~~-~i~~a~~~------~-~~~g-~~~~v~~ 172 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY----------------GANVKGITLSPV-QAARANAL------A-AAQG-LSDKVSF 172 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc----------------CCEEEEEECCHH-HHHHHHHH------H-HhcC-CCCceEE
Confidence 35789999999999888775432 134444454210 00011110 0 0111 0001122
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
+-+...+.-||++++|+++|..++|++.+ ...+|+.
T Consensus 173 ---~~~D~~~~~~~~~~FD~V~s~~~~~h~~d-----------------------------------------~~~~l~e 208 (340)
T PLN02244 173 ---QVADALNQPFEDGQFDLVWSMESGEHMPD-----------------------------------------KRKFVQE 208 (340)
T ss_pred ---EEcCcccCCCCCCCccEEEECCchhccCC-----------------------------------------HHHHHHH
Confidence 22344455578999999999999888532 1136677
Q ss_pred HHHHhccCceEEEEeecCCC---ccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEE
Q 047625 210 RWEELKIGGRMILNFIGNDK---HHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQL 286 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g~~~---e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~l 286 (368)
-.+-|||||++++......+ ....+...-...+..+.. .+..| .+.+++++.+++++.| |.....
T Consensus 209 ~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~----------~~~~p-~~~s~~~~~~~l~~aG-f~~v~~ 276 (340)
T PLN02244 209 LARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICA----------AYYLP-AWCSTSDYVKLAESLG-LQDIKT 276 (340)
T ss_pred HHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHh----------hccCC-CCCCHHHHHHHHHHCC-CCeeEe
Confidence 78999999999998776543 001111111111222111 11223 2358999999999999 987665
Q ss_pred E
Q 047625 287 E 287 (368)
Q Consensus 287 e 287 (368)
+
T Consensus 277 ~ 277 (340)
T PLN02244 277 E 277 (340)
T ss_pred e
Confidence 4
No 15
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.81 E-value=1.5e-07 Score=96.62 Aligned_cols=190 Identities=15% Similarity=0.212 Sum_probs=112.6
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
..+|+|+|||+|..++.+.+.. ..+++--|+.. +.-...+. +..+ .. .+ +
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~----------------~~~v~gvDiS~-~~l~~A~~---------~~~~-~~-~~--v 316 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENF----------------DVHVVGIDLSV-NMISFALE---------RAIG-RK-CS--V 316 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhc----------------CCEEEEEECCH-HHHHHHHH---------Hhhc-CC-Cc--e
Confidence 4799999999997665443211 24666667631 11111110 0001 00 11 1
Q ss_pred eecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFR 210 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~R 210 (368)
.-.-+.+....+|++++|+++|..+++|+.+. ..+|+.-
T Consensus 317 ~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~-----------------------------------------~~~l~~~ 355 (475)
T PLN02336 317 EFEVADCTKKTYPDNSFDVIYSRDTILHIQDK-----------------------------------------PALFRSF 355 (475)
T ss_pred EEEEcCcccCCCCCCCEEEEEECCcccccCCH-----------------------------------------HHHHHHH
Confidence 12334556666788999999999999996431 1257788
Q ss_pred HHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEEEe
Q 047625 211 WEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETSH 290 (368)
Q Consensus 211 a~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~~ 290 (368)
++-|||||++++....+.+ .... ..+...+. ..| +..++.+++.++++++| |++...+.+.
T Consensus 356 ~r~LkpgG~l~i~~~~~~~-~~~~-~~~~~~~~---~~g-------------~~~~~~~~~~~~l~~aG-F~~i~~~d~~ 416 (475)
T PLN02336 356 FKWLKPGGKVLISDYCRSP-GTPS-PEFAEYIK---QRG-------------YDLHDVQAYGQMLKDAG-FDDVIAEDRT 416 (475)
T ss_pred HHHcCCCeEEEEEEeccCC-CCCc-HHHHHHHH---hcC-------------CCCCCHHHHHHHHHHCC-Ceeeeeecch
Confidence 8999999999999887654 1110 01111111 112 25678999999999999 9987554221
Q ss_pred ecCCCCCCCCcccchhhhhhhHHHHHHHHHHHHh---hHHHhhhChHHHHHHHHHHHHHHHH
Q 047625 291 ISWSVGYENDDKGLEFNKHARAKNVANNIRAVSE---SLLANHFGSAIMDDLFHRFTIKISA 349 (368)
Q Consensus 291 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~ira~~~---p~l~~~~~~~i~delf~r~~~~~~~ 349 (368)
..+...+..|+..+-. .++ ..++++..+.+...+.+.+..
T Consensus 417 ------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 459 (475)
T PLN02336 417 ------------------DQFLQVLQRELDAVEKEKDEFI-SDFSEEDYNDIVGGWKAKLVR 459 (475)
T ss_pred ------------------HHHHHHHHHHHHHHHhCHHHHH-HhcCHHHHHHHHHhHHHHHhh
Confidence 1244445555554432 333 457887777777777776653
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.77 E-value=1.5e-07 Score=88.44 Aligned_cols=165 Identities=16% Similarity=0.173 Sum_probs=93.1
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
...+|+|+|||+|.+++.+...+ ..|..+++.-|+- -+.-...+.. ... .+ . ..++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~-------------~~~~~~v~gvD~S-~~ml~~A~~~------~~~-~~-~-~~~v- 111 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDNS-PAMIERCRRH------IDA-YK-A-PTPV- 111 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhc-------------CCCCCeEEEEeCC-HHHHHHHHHH------HHh-cC-C-CCCe-
Confidence 34789999999998877664433 1134677777762 1222222211 100 00 0 0111
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
..+.+++.+- |....|++++..++||++. . +...+|+.
T Consensus 112 -~~~~~d~~~~--~~~~~D~vv~~~~l~~l~~--~-------------------------------------~~~~~l~~ 149 (247)
T PRK15451 112 -DVIEGDIRDI--AIENASMVVLNFTLQFLEP--S-------------------------------------ERQALLDK 149 (247)
T ss_pred -EEEeCChhhC--CCCCCCEEehhhHHHhCCH--H-------------------------------------HHHHHHHH
Confidence 1233444432 3345899999999999652 1 12236788
Q ss_pred HHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCC---ccccc-CCHHHHHHHHHhcCcee
Q 047625 210 RWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFN---YPIYY-PCVEEVRQVIEREGSFN 282 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~---~P~y~-ps~~E~~~~l~~~GsF~ 282 (368)
-++.|||||+|++.-.-..+ .....+.+...|..+....-++++++..+. --... -++++..++|+++| |+
T Consensus 150 i~~~LkpGG~l~l~e~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG-F~ 224 (247)
T PRK15451 150 IYQGLNPGGALVLSEKFSFE-DAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-FE 224 (247)
T ss_pred HHHhcCCCCEEEEEEecCCC-cchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-ch
Confidence 89999999999997533322 111223334445554433336665554321 11233 48899999999999 65
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.74 E-value=1.7e-08 Score=87.13 Aligned_cols=90 Identities=21% Similarity=0.238 Sum_probs=62.8
Q ss_pred cccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 047625 139 GRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGG 218 (368)
Q Consensus 139 ~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG 218 (368)
...+|++++|+|+|+.+|||+.+ +..+|+.-.+-|||||
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d-----------------------------------------~~~~l~~l~~~LkpgG 109 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPD-----------------------------------------PEEFLKELSRLLKPGG 109 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSH-----------------------------------------HHHHHHHHHHCEEEEE
T ss_pred hhhccccchhhHhhHHHHhhccc-----------------------------------------HHHHHHHHHHhcCCCC
Confidence 34568899999999999999663 1236788899999999
Q ss_pred eEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeE
Q 047625 219 RMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQ 285 (368)
Q Consensus 219 ~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~ 285 (368)
++++....+.. .. ...+..+ ....... --..+.++++++.++++.| |+|..
T Consensus 110 ~l~~~~~~~~~----~~---~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 110 YLVISDPNRDD----PS---PRSFLKW---RYDRPYG-----GHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp EEEEEEEBTTS----HH---HHHHHHC---CGTCHHT-----TTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred EEEEEEcCCcc----hh---hhHHHhc---CCcCccC-----ceeccCCHHHHHHHHHHCC-CEEEE
Confidence 99999998754 11 1112221 1111100 1126669999999999999 98864
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.69 E-value=2e-07 Score=87.97 Aligned_cols=165 Identities=19% Similarity=0.198 Sum_probs=92.2
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
.+.+|+|+|||+|..+..+.+. ..+|+.-|+-. +.-...+. .. ...+ . ..++-
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~-----------------g~~v~~vD~s~-~~l~~a~~------~~-~~~g-~-~~~v~ 96 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL-----------------GHQVILCDLSA-EMIQRAKQ------AA-EAKG-V-SDNMQ 96 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc-----------------CCEEEEEECCH-HHHHHHHH------HH-HhcC-C-ccceE
Confidence 4579999999999877666421 14566667621 11111111 00 0011 0 01111
Q ss_pred eeecCCCcccc-cCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGR-LFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLN 208 (368)
Q Consensus 130 ~~~vp~SFy~~-l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~ 208 (368)
.+-++..+- -++++++|++++..++||+.+.+ .+|+
T Consensus 97 --~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~-----------------------------------------~~l~ 133 (255)
T PRK11036 97 --FIHCAAQDIAQHLETPVDLILFHAVLEWVADPK-----------------------------------------SVLQ 133 (255)
T ss_pred --EEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHH-----------------------------------------HHHH
Confidence 122222221 14678999999999999975311 1467
Q ss_pred HHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEE
Q 047625 209 FRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLET 288 (368)
Q Consensus 209 ~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~ 288 (368)
.-++-|||||++++.+..... . .+...+..-+. .+..++..... ....|-+..+++++.+++++.| |++....-
T Consensus 134 ~~~~~LkpgG~l~i~~~n~~~-~-~~~~~~~~~~~-~~~~~~~~~~~--~~~~p~~~~~~~~l~~~l~~aG-f~~~~~~g 207 (255)
T PRK11036 134 TLWSVLRPGGALSLMFYNANG-L-LMHNMVAGNFD-YVQAGMPKRKK--RTLSPDYPLDPEQVYQWLEEAG-WQIMGKTG 207 (255)
T ss_pred HHHHHcCCCeEEEEEEECccH-H-HHHHHHccChH-HHHhcCccccc--cCCCCCCCCCHHHHHHHHHHCC-CeEeeeee
Confidence 778899999999998776543 1 01111111111 11223211111 1123556779999999999999 99987665
Q ss_pred Ee
Q 047625 289 SH 290 (368)
Q Consensus 289 ~~ 290 (368)
+.
T Consensus 208 i~ 209 (255)
T PRK11036 208 VR 209 (255)
T ss_pred EE
Confidence 54
No 19
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.69 E-value=9.4e-08 Score=93.01 Aligned_cols=92 Identities=18% Similarity=0.270 Sum_probs=62.5
Q ss_pred ccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCce
Q 047625 140 RLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGR 219 (368)
Q Consensus 140 ~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~ 219 (368)
.+-+.+++|+|+|..++||+. .+ ..+|+.-++.|+|||+
T Consensus 182 ~lp~~~~FD~V~s~gvL~H~~---dp--------------------------------------~~~L~el~r~LkpGG~ 220 (314)
T TIGR00452 182 QLHELYAFDTVFSMGVLYHRK---SP--------------------------------------LEHLKQLKHQLVIKGE 220 (314)
T ss_pred HCCCCCCcCEEEEcchhhccC---CH--------------------------------------HHHHHHHHHhcCCCCE
Confidence 444557999999999999942 21 1267889999999999
Q ss_pred EEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEE
Q 047625 220 MILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLET 288 (368)
Q Consensus 220 lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~ 288 (368)
|++++...+.+.... +...+....+...++.||.+++..+++++| |+..++..
T Consensus 221 Lvletl~i~g~~~~~---------------l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~ 273 (314)
T TIGR00452 221 LVLETLVIDGDLNTV---------------LVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILD 273 (314)
T ss_pred EEEEEEEecCccccc---------------cCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEe
Confidence 999876432200000 011111223444567899999999999999 99776654
No 20
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.68 E-value=2.4e-07 Score=90.48 Aligned_cols=102 Identities=10% Similarity=0.035 Sum_probs=66.1
Q ss_pred CCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047625 135 GSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEEL 214 (368)
Q Consensus 135 ~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 214 (368)
+++.+-.++++++|++++..++||+.+.+ .||+..++-|
T Consensus 187 ~dae~l~~~~~~FD~Vi~~~vLeHv~d~~-----------------------------------------~~L~~l~r~L 225 (322)
T PLN02396 187 TTAEKLADEGRKFDAVLSLEVIEHVANPA-----------------------------------------EFCKSLSALT 225 (322)
T ss_pred cCHHHhhhccCCCCEEEEhhHHHhcCCHH-----------------------------------------HHHHHHHHHc
Confidence 34443345678999999999999965421 2778888999
Q ss_pred ccCceEEEEeecCCCccchHHHHH--HHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEEE
Q 047625 215 KIGGRMILNFIGNDKHHTGVFELM--GMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETS 289 (368)
Q Consensus 215 kpGG~lvl~~~g~~~e~~~~~~~l--~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~ 289 (368)
||||++++....+.. ...+..+ ..-+..++..|- -....|.+++|+..+++..| |++..+.-+
T Consensus 226 kPGG~liist~nr~~--~~~~~~i~~~eyi~~~lp~gt---------h~~~~f~tp~eL~~lL~~aG-f~i~~~~G~ 290 (322)
T PLN02396 226 IPNGATVLSTINRTM--RAYASTIVGAEYILRWLPKGT---------HQWSSFVTPEELSMILQRAS-VDVKEMAGF 290 (322)
T ss_pred CCCcEEEEEECCcCH--HHHHHhhhhHHHHHhcCCCCC---------cCccCCCCHHHHHHHHHHcC-CeEEEEeee
Confidence 999999999986543 1111111 111122222220 01124789999999999999 998877643
No 21
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.63 E-value=5.7e-07 Score=84.03 Aligned_cols=164 Identities=22% Similarity=0.245 Sum_probs=100.5
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
...+|+|+|||||.-++.+.+.+ ++-+|+.-|. |. ..|..-..+..+ ....+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~---------------g~g~v~~~D~-----s~--~ML~~a~~k~~~----~~~~~-- 102 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV---------------GTGEVVGLDI-----SE--SMLEVAREKLKK----KGVQN-- 102 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc---------------CCceEEEEEC-----CH--HHHHHHHHHhhc----cCccc--
Confidence 46999999999998888776654 1356665555 33 112211222211 01111
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
+.=|=|...+--||++|+|++.+++.||++.+.+.. |+-
T Consensus 103 i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~a-----------------------------------------L~E 141 (238)
T COG2226 103 VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKA-----------------------------------------LKE 141 (238)
T ss_pred eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHH-----------------------------------------HHH
Confidence 333445557888999999999999999998776653 566
Q ss_pred HHHHhccCceEEEEeecCCC--ccchHHH-HHHH-HHHHHHHcCCCc--hhhhc-cCCcccccCCHHHHHHHHHhcCcee
Q 047625 210 RWEELKIGGRMILNFIGNDK--HHTGVFE-LMGM-VLNDMVYEGLIE--ESKLE-SFNYPIYYPCVEEVRQVIEREGSFN 282 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g~~~--e~~~~~~-~l~~-al~~l~~eGli~--~e~~d-~f~~P~y~ps~~E~~~~l~~~GsF~ 282 (368)
-+|-|||||++++.=+.+.+ .....+. .... ++-.+. .++. .+.+. -....--+|+.+++.+.+++.| |+
T Consensus 142 ~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g--~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~ 218 (238)
T COG2226 142 MYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIG--KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FE 218 (238)
T ss_pred HHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhc--eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ce
Confidence 78899999999988887766 1111221 1111 221110 1111 11111 1123446899999999999999 88
Q ss_pred EeE
Q 047625 283 IHQ 285 (368)
Q Consensus 283 I~~ 285 (368)
...
T Consensus 219 ~i~ 221 (238)
T COG2226 219 EVR 221 (238)
T ss_pred EEe
Confidence 555
No 22
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.56 E-value=5.6e-07 Score=82.94 Aligned_cols=169 Identities=15% Similarity=0.152 Sum_probs=94.4
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
..+|+|+|||+|..+..+.... ++..+++..|+.. +.-...+.. ... .+ . ..++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~-~~~~~a~~~------~~~-~~-~-~~~~-- 105 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSE-GMLAVGREK------LRD-LG-L-SGNV-- 105 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCH-HHHHHHHHh------hcc-cc-c-ccCe--
Confidence 4799999999998777665433 1246788888832 111111110 000 00 0 0111
Q ss_pred eecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFR 210 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~R 210 (368)
..+-+++.+..++++++|++++++.+|++++.+ .+|+..
T Consensus 106 ~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~-----------------------------------------~~l~~~ 144 (239)
T PRK00216 106 EFVQGDAEALPFPDNSFDAVTIAFGLRNVPDID-----------------------------------------KALREM 144 (239)
T ss_pred EEEecccccCCCCCCCccEEEEecccccCCCHH-----------------------------------------HHHHHH
Confidence 123345555557788999999999999854322 256777
Q ss_pred HHHhccCceEEEEeecCCCccchHHHHHHHHHHH--------HHHcCCCchhhhccC-CcccccCCHHHHHHHHHhcCce
Q 047625 211 WEELKIGGRMILNFIGNDKHHTGVFELMGMVLND--------MVYEGLIEESKLESF-NYPIYYPCVEEVRQVIEREGSF 281 (368)
Q Consensus 211 a~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~--------l~~eGli~~e~~d~f-~~P~y~ps~~E~~~~l~~~GsF 281 (368)
.+-|+|||++++.-..... ... +....+.+.. +..... +....+ +.--.+++.+++..+++++| |
T Consensus 145 ~~~L~~gG~li~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~aG-f 218 (239)
T PRK00216 145 YRVLKPGGRLVILEFSKPT-NPP-LKKAYDFYLFKVLPLIGKLISKNA---EAYSYLAESIRAFPDQEELAAMLEEAG-F 218 (239)
T ss_pred HHhccCCcEEEEEEecCCC-chH-HHHHHHHHHHhhhHHHHHHHcCCc---HHHHHHHHHHHhCCCHHHHHHHHHhCC-C
Confidence 8899999999887665544 111 1111111111 111110 000000 00124679999999999999 9
Q ss_pred eEeEEEEEeec
Q 047625 282 NIHQLETSHIS 292 (368)
Q Consensus 282 ~I~~le~~~~~ 292 (368)
++.+...+...
T Consensus 219 ~~~~~~~~~~~ 229 (239)
T PRK00216 219 ERVRYRNLTGG 229 (239)
T ss_pred ceeeeeeeecC
Confidence 98877765433
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.56 E-value=4.7e-07 Score=83.32 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=58.8
Q ss_pred CCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEE
Q 047625 144 PCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILN 223 (368)
Q Consensus 144 ~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~ 223 (368)
++++|+++|...+|++.+ +..+|+.-++-|+|||++++.
T Consensus 65 ~~~fD~I~~~~~l~~~~~-----------------------------------------~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 65 PDTYDLVFGFEVIHHIKD-----------------------------------------KMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred CCCCCEeehHHHHHhCCC-----------------------------------------HHHHHHHHHHHcCCCCEEEEE
Confidence 368999999999999532 223678889999999999987
Q ss_pred eecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEEEe
Q 047625 224 FIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETSH 290 (368)
Q Consensus 224 ~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~~ 290 (368)
-..... +. + +.. -..+.|+++.+++.+.+++.| |++...+.+.
T Consensus 104 ~~~~~~------------~~-----~-~~~-----~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~~ 146 (224)
T smart00828 104 DFIANL------------LS-----A-IEH-----EETTSYLVTREEWAELLARNN-LRVVEGVDAS 146 (224)
T ss_pred Eccccc------------Cc-----c-ccc-----cccccccCCHHHHHHHHHHCC-CeEEEeEECc
Confidence 653321 00 0 001 112446899999999999999 9998876653
No 24
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.55 E-value=6.3e-07 Score=88.06 Aligned_cols=148 Identities=16% Similarity=0.206 Sum_probs=89.6
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
..+|+|+|||+|..++.+.+.. +..++..-|+-. +.-...+.... . .++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~---------------~~~~VtgVD~S~-~mL~~A~~k~~--------~-----~~i-- 162 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV---------------DAKNVTILDQSP-HQLAKAKQKEP--------L-----KEC-- 162 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHHHhhh--------c-----cCC--
Confidence 4799999999998777664432 225677777731 12111111100 0 111
Q ss_pred eecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFR 210 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~R 210 (368)
..+.++..+.-++++++|+++++.++|++.+. ...|+.-
T Consensus 163 ~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~-----------------------------------------~~~L~e~ 201 (340)
T PLN02490 163 KIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP-----------------------------------------QRGIKEA 201 (340)
T ss_pred eEEeccHHhCCCCCCceeEEEEcChhhhCCCH-----------------------------------------HHHHHHH
Confidence 12444445555788999999999999984321 1247888
Q ss_pred HHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEEEe
Q 047625 211 WEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETSH 290 (368)
Q Consensus 211 a~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~~ 290 (368)
.+-|+|||++++.-....+ .+ +...+.+ .-..+++.+|+.+++++.| |+...++.+.
T Consensus 202 ~rvLkPGG~LvIi~~~~p~----~~--~~r~~~~----------------~~~~~~t~eEl~~lL~~aG-F~~V~i~~i~ 258 (340)
T PLN02490 202 YRVLKIGGKACLIGPVHPT----FW--LSRFFAD----------------VWMLFPKEEEYIEWFTKAG-FKDVKLKRIG 258 (340)
T ss_pred HHhcCCCcEEEEEEecCcc----hh--HHHHhhh----------------hhccCCCHHHHHHHHHHCC-CeEEEEEEcC
Confidence 8999999999886432221 01 1100110 0113579999999999999 9988877654
Q ss_pred ecC
Q 047625 291 ISW 293 (368)
Q Consensus 291 ~~~ 293 (368)
..|
T Consensus 259 ~~~ 261 (340)
T PLN02490 259 PKW 261 (340)
T ss_pred hhh
Confidence 444
No 25
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.52 E-value=1.1e-05 Score=80.69 Aligned_cols=140 Identities=11% Similarity=0.181 Sum_probs=83.8
Q ss_pred CCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEE
Q 047625 144 PCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILN 223 (368)
Q Consensus 144 ~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~ 223 (368)
++++|.++|...++|+. . +++..+++.-.+-|||||++++.
T Consensus 226 ~~~fD~Ivs~~~~ehvg---~------------------------------------~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVG---P------------------------------------KNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CCCCCEEEEeCchhhCC---h------------------------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 57899999988888841 1 13445788889999999999999
Q ss_pred eecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCccc-ccCCHHHHHHHHHhcCceeEeEEEEEeecCCCCCCCCcc
Q 047625 224 FIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPI-YYPCVEEVRQVIEREGSFNIHQLETSHISWSVGYENDDK 302 (368)
Q Consensus 224 ~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~-y~ps~~E~~~~l~~~GsF~I~~le~~~~~~~~~~~~~~~ 302 (368)
..+.+. ... .....++.+.+|- +.|+++++...++ .| |+|..++.+..
T Consensus 267 ~i~~~~-~~~-----------------~~~~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~d~~~~~~----------- 315 (383)
T PRK11705 267 TIGSNK-TDT-----------------NVDPWINKYIFPNGCLPSVRQIAQASE-GL-FVMEDWHNFGA----------- 315 (383)
T ss_pred EccCCC-CCC-----------------CCCCCceeeecCCCcCCCHHHHHHHHH-CC-cEEEEEecChh-----------
Confidence 887765 100 0011223344553 6789999999876 46 88877754321
Q ss_pred cchhhhhhhHHHHHHHHHHHHhh--HHHhhhChHHHHHHHHHHHHHHHHhHhhcCCCEEEE
Q 047625 303 GLEFNKHARAKNVANNIRAVSES--LLANHFGSAIMDDLFHRFTIKISAHLEMGLGAHTVL 361 (368)
Q Consensus 303 ~~d~~~~~~~~~~~~~ira~~~p--~l~~~~~~~i~delf~r~~~~~~~~l~~~~~~~~~~ 361 (368)
-|++++..|.+.+-.. -+..-+|++. -.+++-|-...+.........-.++
T Consensus 316 -------hy~~TL~~W~~~f~~~~~~~~~~~~~~~-~r~w~~yl~~~~~~F~~~~~~~~q~ 368 (383)
T PRK11705 316 -------DYDRTLMAWHENFEAAWPELADNYSERF-YRMWRYYLLSCAGAFRARDIQLWQV 368 (383)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhCCCceEEEE
Confidence 2455666666655442 2233444433 2344445444444444444444444
No 26
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=1.8e-06 Score=79.24 Aligned_cols=94 Identities=26% Similarity=0.484 Sum_probs=73.3
Q ss_pred CCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEE
Q 047625 142 FPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMI 221 (368)
Q Consensus 142 ~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lv 221 (368)
|-.+|+|+++|+.++||..++|.. ...+...|||.|.|+
T Consensus 133 f~ens~DLiisSlslHW~NdLPg~-----------------------------------------m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 133 FKENSVDLIISSLSLHWTNDLPGS-----------------------------------------MIQCKLALKPDGLFI 171 (325)
T ss_pred ccccchhhhhhhhhhhhhccCchH-----------------------------------------HHHHHHhcCCCccch
Confidence 788999999999999999999983 366788999999999
Q ss_pred EEeecCCCccchHHH-HHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEE
Q 047625 222 LNFIGNDKHHTGVFE-LMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLET 288 (368)
Q Consensus 222 l~~~g~~~e~~~~~~-~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~ 288 (368)
.+|+|-+. +++ ...-.|.+|-.+|-|++- ..| |-...++-.+|..+| |....+.+
T Consensus 172 asmlggdT----LyELR~slqLAelER~GGiSph-----iSP--f~qvrDiG~LL~rAG-F~m~tvDt 227 (325)
T KOG2940|consen 172 ASMLGGDT----LYELRCSLQLAELEREGGISPH-----ISP--FTQVRDIGNLLTRAG-FSMLTVDT 227 (325)
T ss_pred hHHhcccc----HHHHHHHhhHHHHHhccCCCCC-----cCh--hhhhhhhhhHHhhcC-cccceecc
Confidence 99999987 555 244557888888887752 223 234678889999999 87655543
No 27
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.51 E-value=1.1e-07 Score=88.91 Aligned_cols=165 Identities=19% Similarity=0.285 Sum_probs=62.5
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
...+|+|+|||+|..|+.+...+ .|...|+--|+.. +.-... ..+.... ...++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~--------------~~~~~v~~vD~s~-~ML~~a------~~k~~~~----~~~~i- 100 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRV--------------GPNGKVVGVDISP-GMLEVA------RKKLKRE----GLQNI- 100 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGS--------------S---EEEEEES-H-HHHHHH------HHHHHHT----T--SE-
T ss_pred CCCEEEEeCCChHHHHHHHHHHC--------------CCccEEEEecCCH-HHHHHH------HHHHHhh----CCCCe-
Confidence 35799999999998777664433 1335677666621 111111 1122111 11122
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
.-+-++..+--||++|+|.+++++.+|-+.+.+ ..|+.
T Consensus 101 -~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~-----------------------------------------~~l~E 138 (233)
T PF01209_consen 101 -EFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRE-----------------------------------------RALRE 138 (233)
T ss_dssp -EEEE-BTTB--S-TT-EEEEEEES-GGG-SSHH-----------------------------------------HHHHH
T ss_pred -eEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHH-----------------------------------------HHHHH
Confidence 223344466668999999999999999864422 24677
Q ss_pred HHHHhccCceEEEEeecCCCc--cchHHHHHHH-HHHHHHHcCCCchhhhccC----CcccccCCHHHHHHHHHhcCcee
Q 047625 210 RWEELKIGGRMILNFIGNDKH--HTGVFELMGM-VLNDMVYEGLIEESKLESF----NYPIYYPCVEEVRQVIEREGSFN 282 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g~~~e--~~~~~~~l~~-al~~l~~eGli~~e~~d~f----~~P~y~ps~~E~~~~l~~~GsF~ 282 (368)
-.+-|||||++++.=+++.+. ...++..... .+- ++ -.++..+ .+.+ ..--.||+++|+.+.++++| |+
T Consensus 139 ~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP-~~-g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~ 214 (233)
T PF01209_consen 139 MYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILP-LI-GRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG-FK 214 (233)
T ss_dssp HHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--------------------------------------------------
T ss_pred HHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccc-cc-ccccccc-cccccccccccccccccccccccccccc-cc
Confidence 788999999999888887761 1112211111 110 00 0122221 1111 12235899999999999999 88
Q ss_pred EeEE
Q 047625 283 IHQL 286 (368)
Q Consensus 283 I~~l 286 (368)
..+.
T Consensus 215 ~v~~ 218 (233)
T PF01209_consen 215 NVEY 218 (233)
T ss_dssp ----
T ss_pred cccc
Confidence 5443
No 28
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.50 E-value=1.3e-05 Score=76.67 Aligned_cols=74 Identities=22% Similarity=0.439 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCccc-ccCCHHHHHHHHHhcCc
Q 047625 202 DFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPI-YYPCVEEVRQVIEREGS 280 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~-y~ps~~E~~~~l~~~Gs 280 (368)
++..|++..++-|||||++++...+..+ . ... . +.-.+.+-+....+|- +.|+.+++...+++.|
T Consensus 144 ~~~~~f~~~~~~LkpgG~~~lq~i~~~~-~--~~~-~---------~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~- 209 (273)
T PF02353_consen 144 NYPAFFRKISRLLKPGGRLVLQTITHRD-P--PYH-A---------ERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG- 209 (273)
T ss_dssp GHHHHHHHHHHHSETTEEEEEEEEEE---H--HHH-H---------CTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeccccc-c--cch-h---------hcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC-
Confidence 5667999999999999999999887766 1 000 0 0000001111222232 6789999999999888
Q ss_pred eeEeEEEEE
Q 047625 281 FNIHQLETS 289 (368)
Q Consensus 281 F~I~~le~~ 289 (368)
|+|...+.+
T Consensus 210 l~v~~~~~~ 218 (273)
T PF02353_consen 210 LEVEDVENL 218 (273)
T ss_dssp -EEEEEEE-
T ss_pred EEEEEEEEc
Confidence 998777544
No 29
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.45 E-value=3.4e-07 Score=71.58 Aligned_cols=50 Identities=28% Similarity=0.422 Sum_probs=39.1
Q ss_pred ecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047625 132 VAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRW 211 (368)
Q Consensus 132 ~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra 211 (368)
-+-+++..--||++|+|++++..++||+ + |...+|+..+
T Consensus 46 ~~~~d~~~l~~~~~sfD~v~~~~~~~~~----~-------------------------------------~~~~~l~e~~ 84 (95)
T PF08241_consen 46 FRQGDAEDLPFPDNSFDVVFSNSVLHHL----E-------------------------------------DPEAALREIY 84 (95)
T ss_dssp EEESBTTSSSS-TT-EEEEEEESHGGGS----S-------------------------------------HHHHHHHHHH
T ss_pred heeehHHhCccccccccccccccceeec----c-------------------------------------CHHHHHHHHH
Confidence 3445567778999999999999999997 1 3344789999
Q ss_pred HHhccCceEEE
Q 047625 212 EELKIGGRMIL 222 (368)
Q Consensus 212 ~ELkpGG~lvl 222 (368)
+-|||||++++
T Consensus 85 rvLk~gG~l~~ 95 (95)
T PF08241_consen 85 RVLKPGGRLVI 95 (95)
T ss_dssp HHEEEEEEEEE
T ss_pred HHcCcCeEEeC
Confidence 99999999986
No 30
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.38 E-value=2.2e-06 Score=78.20 Aligned_cols=167 Identities=16% Similarity=0.188 Sum_probs=92.3
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
...+|+|+|||+|..+..+.... + ...+++.-|+-. ++-...+. ... . . .++-
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~-------------~-~~~~~~~iD~~~-~~~~~~~~------~~~---~-~--~~i~ 91 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA-------------P-DRGKVTGVDFSS-EMLEVAKK------KSE---L-P--LNIE 91 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc-------------C-CCceEEEEECCH-HHHHHHHH------Hhc---c-C--CCce
Confidence 45799999999998877665432 1 115677777621 11111110 000 0 0 1111
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
.+.+++.+..++++++|+++++..+|+..+ ...+|+.
T Consensus 92 --~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~-----------------------------------------~~~~l~~ 128 (223)
T TIGR01934 92 --FIQADAEALPFEDNSFDAVTIAFGLRNVTD-----------------------------------------IQKALRE 128 (223)
T ss_pred --EEecchhcCCCCCCcEEEEEEeeeeCCccc-----------------------------------------HHHHHHH
Confidence 123444555577889999999999987432 1236788
Q ss_pred HHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHH---cCCCchhhhccCC----cccccCCHHHHHHHHHhcCcee
Q 047625 210 RWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVY---EGLIEESKLESFN----YPIYYPCVEEVRQVIEREGSFN 282 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~---eGli~~e~~d~f~----~P~y~ps~~E~~~~l~~~GsF~ 282 (368)
..+.|+|||++++.-.-... .. .+..+.+.+..... .+.+... .+.+. ....+++.+|+..++++.| |+
T Consensus 129 ~~~~L~~gG~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~ 204 (223)
T TIGR01934 129 MYRVLKPGGRLVILEFSKPA-NA-LLKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FE 204 (223)
T ss_pred HHHHcCCCcEEEEEEecCCC-ch-hhHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cc
Confidence 89999999999986653333 11 12211122211100 0111100 01110 1123679999999999999 99
Q ss_pred EeEEEEEe
Q 047625 283 IHQLETSH 290 (368)
Q Consensus 283 I~~le~~~ 290 (368)
+...+.+.
T Consensus 205 ~~~~~~~~ 212 (223)
T TIGR01934 205 EVRYRSLT 212 (223)
T ss_pred cceeeeee
Confidence 88777553
No 31
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.37 E-value=9.1e-06 Score=78.71 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=88.5
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
...+|+|+|||+|..++.+.+.. |..+++.-|+|. .-...+ .. . ...+.. ..
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~---------------p~~~~~~~D~~~--~~~~a~---~~---~-~~~gl~--~r-- 200 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF---------------PELDSTILNLPG--AIDLVN---EN---A-AEKGVA--DR-- 200 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC---------------CCCEEEEEecHH--HHHHHH---HH---H-HhCCcc--ce--
Confidence 45799999999997666554442 557777778862 111111 11 0 111100 12
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
+..++++|++.-+|+ .|+++.+..+|-. ++ .+-..+|+.
T Consensus 201 v~~~~~d~~~~~~~~--~D~v~~~~~lh~~---~~------------------------------------~~~~~il~~ 239 (306)
T TIGR02716 201 MRGIAVDIYKESYPE--ADAVLFCRILYSA---NE------------------------------------QLSTIMCKK 239 (306)
T ss_pred EEEEecCccCCCCCC--CCEEEeEhhhhcC---Ch------------------------------------HHHHHHHHH
Confidence 345788888755665 4999888888731 11 012346888
Q ss_pred HHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeE
Q 047625 210 RWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQ 285 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~ 285 (368)
-++.|+|||++++.=.-.++.....+..+...+. ..+.. ..+..+++.+|+.+++++.| |+...
T Consensus 240 ~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~~e~~~ll~~aG-f~~v~ 303 (306)
T TIGR02716 240 AFDAMRSGGRLLILDMVIDDPENPNFDYLSHYIL---GAGMP--------FSVLGFKEQARYKEILESLG-YKDVT 303 (306)
T ss_pred HHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHH---Hcccc--------cccccCCCHHHHHHHHHHcC-CCeeE
Confidence 8999999999988744222211111222222211 11211 01124566899999999999 87543
No 32
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.33 E-value=7e-07 Score=71.43 Aligned_cols=99 Identities=23% Similarity=0.234 Sum_probs=47.6
Q ss_pred eeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceeeeecC
Q 047625 55 TDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGVAP 134 (368)
Q Consensus 55 aD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vp 134 (368)
+|+|||+|.++..+++.. |..+++..|.-. ++-...+. +...... . ....+....
T Consensus 1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~-~~l~~a~~------~~~~~~~-~--~~~~~~~~~ 55 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISP-SMLERARE------RLAELGN-D--NFERLRFDV 55 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------------EEEEEEEESSS-STTSTTCC------CHHHCT------EEEEE--S
T ss_pred CEeCccChHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHHHH------HhhhcCC-c--ceeEEEeec
Confidence 699999999999887765 357888888732 11111111 0100000 0 111222222
Q ss_pred CCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047625 135 GSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEEL 214 (368)
Q Consensus 135 ~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 214 (368)
....... +++++|+|+++.++||+. |+..+|+.-++-|
T Consensus 56 ~~~~~~~-~~~~fD~V~~~~vl~~l~-----------------------------------------~~~~~l~~~~~~L 93 (99)
T PF08242_consen 56 LDLFDYD-PPESFDLVVASNVLHHLE-----------------------------------------DIEAVLRNIYRLL 93 (99)
T ss_dssp SS---CC-C----SEEEEE-TTS--S------------------------------------------HHHHHHHHTTT-
T ss_pred CChhhcc-cccccceehhhhhHhhhh-----------------------------------------hHHHHHHHHHHHc
Confidence 2222222 227999999999999971 2334788899999
Q ss_pred ccCceE
Q 047625 215 KIGGRM 220 (368)
Q Consensus 215 kpGG~l 220 (368)
+|||+|
T Consensus 94 ~pgG~l 99 (99)
T PF08242_consen 94 KPGGIL 99 (99)
T ss_dssp TSS-EE
T ss_pred CCCCCC
Confidence 999986
No 33
>PRK06202 hypothetical protein; Provisional
Probab=98.31 E-value=1.1e-05 Score=74.92 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=90.2
Q ss_pred CCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCce
Q 047625 49 PDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSC 128 (368)
Q Consensus 49 ~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~ 128 (368)
....+|+|+|||+|.++..+.... ++. .|..+++--|+-. +.-...+.... . . +--
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~----~~~-------g~~~~v~gvD~s~-~~l~~a~~~~~---------~-~--~~~ 114 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA----RRD-------GLRLEVTAIDPDP-RAVAFARANPR---------R-P--GVT 114 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH----HhC-------CCCcEEEEEcCCH-HHHHHHHhccc---------c-C--CCe
Confidence 346899999999999887654432 111 1336788888731 22222221100 0 0 111
Q ss_pred eeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047625 129 FIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLN 208 (368)
Q Consensus 129 f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~ 208 (368)
+..+....+ -++++++|+++|+.++||+.+. ++..+|+
T Consensus 115 ~~~~~~~~l---~~~~~~fD~V~~~~~lhh~~d~---------------------------------------~~~~~l~ 152 (232)
T PRK06202 115 FRQAVSDEL---VAEGERFDVVTSNHFLHHLDDA---------------------------------------EVVRLLA 152 (232)
T ss_pred EEEEecccc---cccCCCccEEEECCeeecCChH---------------------------------------HHHHHHH
Confidence 222222111 1367899999999999996431 1223555
Q ss_pred HHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcC-CCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEE
Q 047625 209 FRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEG-LIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLE 287 (368)
Q Consensus 209 ~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eG-li~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le 287 (368)
.-++-++ |.+++.-+.++. ..... . .........| ++..+ ....-.-+++++|+.+.+++ | |++...-
T Consensus 153 ~~~r~~~--~~~~i~dl~~~~-~~~~~--~-~~~~~~~~~~~~~~~d---~~~s~~~~~~~~el~~ll~~-G-f~~~~~~ 221 (232)
T PRK06202 153 DSAALAR--RLVLHNDLIRSR-LAYAL--F-WAGTRLLSRSSFVHTD---GLLSVRRSYTPAELAALAPQ-G-WRVERQW 221 (232)
T ss_pred HHHHhcC--eeEEEeccccCH-HHHHH--H-HHHHHHhccCceeecc---chHHHHhhcCHHHHHHHhhC-C-CeEEecc
Confidence 5555555 666666666653 11111 1 1111111112 12221 22222368899999999998 8 9988876
Q ss_pred EEeecC
Q 047625 288 TSHISW 293 (368)
Q Consensus 288 ~~~~~~ 293 (368)
.|...|
T Consensus 222 ~~~~~~ 227 (232)
T PRK06202 222 PFRYLL 227 (232)
T ss_pred ceeeEE
Confidence 665544
No 34
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.30 E-value=1e-05 Score=73.89 Aligned_cols=60 Identities=27% Similarity=0.440 Sum_probs=48.0
Q ss_pred ccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCce
Q 047625 140 RLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGR 219 (368)
Q Consensus 140 ~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~ 219 (368)
--|+++++|=++|-+|+|||=+.-+.... | ++.+.+|+..-...|++|++
T Consensus 106 lpfrpGtFDg~ISISAvQWLcnA~~s~~~-------------------P-----------~~Rl~~FF~tLy~~l~rg~r 155 (270)
T KOG1541|consen 106 LPFRPGTFDGVISISAVQWLCNADKSLHV-------------------P-----------KKRLLRFFGTLYSCLKRGAR 155 (270)
T ss_pred CCCCCCccceEEEeeeeeeecccCccccC-------------------h-----------HHHHHHHhhhhhhhhccCce
Confidence 45899999999999999997654432210 2 56889999999999999999
Q ss_pred EEEEeecCCC
Q 047625 220 MILNFIGNDK 229 (368)
Q Consensus 220 lvl~~~g~~~ 229 (368)
.|+++.-...
T Consensus 156 aV~QfYpen~ 165 (270)
T KOG1541|consen 156 AVLQFYPENE 165 (270)
T ss_pred eEEEecccch
Confidence 9999975544
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.28 E-value=5.9e-06 Score=78.54 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=85.2
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
.-+|+|+|||+|..++.+...+ .+..+|+--|.-. +.-...+. .. ...+ ..++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~--------------g~~~~v~gvD~s~-~~l~~A~~------~~-~~~g---~~~v-- 130 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRV--------------GPTGKVIGVDMTP-EMLAKARA------NA-RKAG---YTNV-- 130 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEECCCH-HHHHHHHH------HH-HHcC---CCCE--
Confidence 4799999999997766543322 1334677677621 11111111 00 0011 1111
Q ss_pred eecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFR 210 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~R 210 (368)
..+.+++..--+|++++|+++|..++||..+.+ ..|+.-
T Consensus 131 ~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~-----------------------------------------~~l~~~ 169 (272)
T PRK11873 131 EFRLGEIEALPVADNSVDVIISNCVINLSPDKE-----------------------------------------RVFKEA 169 (272)
T ss_pred EEEEcchhhCCCCCCceeEEEEcCcccCCCCHH-----------------------------------------HHHHHH
Confidence 123344444346788999999999999842211 245667
Q ss_pred HHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEE
Q 047625 211 WEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLET 288 (368)
Q Consensus 211 a~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~ 288 (368)
.+-|||||+|++.-.....+ +...+...+.-+ .+. .....+.+|+..++++.| |....+..
T Consensus 170 ~r~LkpGG~l~i~~~~~~~~---~~~~~~~~~~~~--~~~-----------~~~~~~~~e~~~~l~~aG-f~~v~i~~ 230 (272)
T PRK11873 170 FRVLKPGGRFAISDVVLRGE---LPEEIRNDAELY--AGC-----------VAGALQEEEYLAMLAEAG-FVDITIQP 230 (272)
T ss_pred HHHcCCCcEEEEEEeeccCC---CCHHHHHhHHHH--hcc-----------ccCCCCHHHHHHHHHHCC-CCceEEEe
Confidence 88899999999975533321 112222222111 010 113457889999999999 88776543
No 36
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.26 E-value=4.4e-06 Score=67.90 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhccCceEEEEe
Q 047625 202 DFTSFLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~ 224 (368)
+...+|+...+.|+|||+|++..
T Consensus 89 ~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 89 ERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEE
Confidence 45567899999999999999874
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.26 E-value=1.3e-05 Score=72.82 Aligned_cols=138 Identities=16% Similarity=0.134 Sum_probs=78.8
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
..+|+|+|||+|.+++.+.+. -.+|.--|+-. +.-...+.. ....+ ..+ +
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~-----------------g~~V~gvD~S~-~~i~~a~~~-------~~~~~---~~~--v 80 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN-----------------GFDVTAWDKNP-MSIANLERI-------KAAEN---LDN--L 80 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC-----------------CCEEEEEeCCH-HHHHHHHHH-------HHHcC---CCc--c
Confidence 479999999999998776532 13455556621 111111111 00111 011 1
Q ss_pred eecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFR 210 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~R 210 (368)
..+..++.+ +-+++++|+++|..++||++. . |...+++.-
T Consensus 81 ~~~~~d~~~-~~~~~~fD~I~~~~~~~~~~~--~-------------------------------------~~~~~l~~i 120 (197)
T PRK11207 81 HTAVVDLNN-LTFDGEYDFILSTVVLMFLEA--K-------------------------------------TIPGLIANM 120 (197)
T ss_pred eEEecChhh-CCcCCCcCEEEEecchhhCCH--H-------------------------------------HHHHHHHHH
Confidence 122233332 223578999999999999631 1 344578888
Q ss_pred HHHhccCceEEEE-eecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEE
Q 047625 211 WEELKIGGRMILN-FIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLE 287 (368)
Q Consensus 211 a~ELkpGG~lvl~-~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le 287 (368)
++-|+|||++++. .+...+ .. . ..| |-+..+++|+.+.++ | |++.+.+
T Consensus 121 ~~~LkpgG~~~~~~~~~~~~-~~-----------~--~~~------------~~~~~~~~el~~~~~--~-~~~~~~~ 169 (197)
T PRK11207 121 QRCTKPGGYNLIVAAMDTAD-YP-----------C--TVG------------FPFAFKEGELRRYYE--G-WEMVKYN 169 (197)
T ss_pred HHHcCCCcEEEEEEEecCCC-CC-----------C--CCC------------CCCccCHHHHHHHhC--C-CeEEEee
Confidence 9999999996554 433222 00 0 011 225568899998887 6 8876664
No 38
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.22 E-value=0.00011 Score=70.24 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCc
Q 047625 201 SDFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGS 280 (368)
Q Consensus 201 ~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~Gs 280 (368)
+.+..|++.-.+-|+|||+|++...+... .... . ...=+..- |-+ =-+.||..++....++.|
T Consensus 153 ~~~~~ff~~~~~~L~~~G~~llh~I~~~~-~~~~-~-~~~~i~~y-----iFP--------gG~lPs~~~i~~~~~~~~- 215 (283)
T COG2230 153 ENYDDFFKKVYALLKPGGRMLLHSITGPD-QEFR-R-FPDFIDKY-----IFP--------GGELPSISEILELASEAG- 215 (283)
T ss_pred ccHHHHHHHHHhhcCCCceEEEEEecCCC-cccc-c-chHHHHHh-----CCC--------CCcCCCHHHHHHHHHhcC-
Confidence 45667999999999999999999988766 1110 0 00001111 111 126789999999999999
Q ss_pred eeEeEEEEE
Q 047625 281 FNIHQLETS 289 (368)
Q Consensus 281 F~I~~le~~ 289 (368)
|.|...+.+
T Consensus 216 ~~v~~~~~~ 224 (283)
T COG2230 216 FVVLDVESL 224 (283)
T ss_pred cEEehHhhh
Confidence 888655443
No 39
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.18 E-value=1.7e-05 Score=75.64 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=17.5
Q ss_pred CceEEeeecCCCCCCchHHHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQ 71 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ 71 (368)
...+|+|+|||+|..+..+...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~ 106 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADA 106 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHh
Confidence 3478999999999888777544
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.15 E-value=0.00015 Score=66.55 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=25.4
Q ss_pred CcccccCCHHHHHHHHHhcCceeEeEEEEEe
Q 047625 260 NYPIYYPCVEEVRQVIEREGSFNIHQLETSH 290 (368)
Q Consensus 260 ~~P~y~ps~~E~~~~l~~~GsF~I~~le~~~ 290 (368)
..++++++++|+.++++..| |++...+...
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred ccceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 34678899999999999999 9998887554
No 41
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.14 E-value=3.7e-06 Score=72.83 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=65.9
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
+..+|+|+|||+|..+..+...+ .|..+++--|+-. +.-...+. .. ...+ -. +--|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~--------------~~~~~i~gvD~s~-~~i~~a~~------~~-~~~~-~~-ni~~ 58 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL--------------NPGAKIIGVDISE-EMIEYAKK------RA-KELG-LD-NIEF 58 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS--------------TTTSEEEEEESSH-HHHHHHHH------HH-HHTT-ST-TEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhc--------------CCCCEEEEEECcH-HHHHHhhc------cc-cccc-cc-ccce
Confidence 35899999999998887776422 1336788888721 11111111 00 0111 00 1233
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
..+--.+ ..+.++ +.+|++++..++||+.. ...+|+.
T Consensus 59 ~~~d~~~-l~~~~~-~~~D~I~~~~~l~~~~~-----------------------------------------~~~~l~~ 95 (152)
T PF13847_consen 59 IQGDIED-LPQELE-EKFDIIISNGVLHHFPD-----------------------------------------PEKVLKN 95 (152)
T ss_dssp EESBTTC-GCGCSS-TTEEEEEEESTGGGTSH-----------------------------------------HHHHHHH
T ss_pred EEeehhc-cccccC-CCeeEEEEcCchhhccC-----------------------------------------HHHHHHH
Confidence 3333323 222244 89999999999988443 2235778
Q ss_pred HHHHhccCceEEEEeec
Q 047625 210 RWEELKIGGRMILNFIG 226 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g 226 (368)
-.+-|++||++++....
T Consensus 96 ~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 96 IIRLLKPGGILIISDPN 112 (152)
T ss_dssp HHHHEEEEEEEEEEEEE
T ss_pred HHHHcCCCcEEEEEECC
Confidence 88999999999999876
No 42
>PRK06922 hypothetical protein; Provisional
Probab=98.13 E-value=4.9e-06 Score=87.35 Aligned_cols=118 Identities=18% Similarity=0.085 Sum_probs=69.3
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
..+|+|+|||+|..+..+.+.. |..+++--|+.. +.-...+ .... ..+ .+-.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~---------------P~~kVtGIDIS~-~MLe~Ar------arl~-~~g---~~ie~I 472 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEET---------------EDKRIYGIDISE-NVIDTLK------KKKQ-NEG---RSWNVI 472 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHHH------HHhh-hcC---CCeEEE
Confidence 4799999999997665443321 447778778742 1111111 0000 000 011122
Q ss_pred eecCCCcccccCCCCccceEEcccccccc-cCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWL-SQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWl-s~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
.+.... ....||++++|++++++++||+ +.+|..-. .|| .+|...+|+.
T Consensus 473 ~gDa~d-Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~------~f~-----------------------~edl~kiLre 522 (677)
T PRK06922 473 KGDAIN-LSSSFEKESVDTIVYSSILHELFSYIEYEGK------KFN-----------------------HEVIKKGLQS 522 (677)
T ss_pred EcchHh-CccccCCCCEEEEEEchHHHhhhhhcccccc------ccc-----------------------HHHHHHHHHH
Confidence 222211 1224788999999999999975 44553210 000 2477889999
Q ss_pred HHHHhccCceEEEEe
Q 047625 210 RWEELKIGGRMILNF 224 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~ 224 (368)
-.+.|||||++++.-
T Consensus 523 I~RVLKPGGrLII~D 537 (677)
T PRK06922 523 AYEVLKPGGRIIIRD 537 (677)
T ss_pred HHHHcCCCcEEEEEe
Confidence 999999999999964
No 43
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.11 E-value=3.7e-06 Score=76.71 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=77.5
Q ss_pred HHHHHHHHhHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchh
Q 047625 24 PPREAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFN 103 (368)
Q Consensus 24 ~Q~~~~~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn 103 (368)
+|+.+.....|++-........-......+|+|+|||+|..+..+.+.. |..+++-.|.-. +.-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~---------------p~~~v~gVD~s~-~~i 77 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKAN---------------PDINFIGIEVHE-PGV 77 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHC---------------CCccEEEEEech-HHH
Confidence 4556666666665322222111111245799999999998888775432 335677667621 111
Q ss_pred hhhhcChhhHHHhhhhccCCCCCceeeeecCCCc---ccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccE
Q 047625 104 TLSKSLPSFYERLKTEKRNDDFGSCFIGVAPGSL---YGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDV 180 (368)
Q Consensus 104 ~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vp~SF---y~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i 180 (368)
...+. ... .. ...++- .+-++. +.+.++++++|.+++....+|.... ... .
T Consensus 78 ~~a~~------~~~-~~---~~~~v~--~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~-~~~-----------~-- 131 (202)
T PRK00121 78 GKALK------KIE-EE---GLTNLR--LLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKR-HHK-----------R-- 131 (202)
T ss_pred HHHHH------HHH-Hc---CCCCEE--EEecCHHHHHHHHcCccccceEEEECCCCCCCcc-ccc-----------c--
Confidence 11110 000 00 112222 122333 3355788999999998877774421 100 0
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEee
Q 047625 181 CVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 181 ~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
+.+...||+.-++-|+|||++++...
T Consensus 132 -------------------~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 132 -------------------RLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred -------------------ccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 00234588888999999999999873
No 44
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.07 E-value=2.1e-05 Score=73.39 Aligned_cols=168 Identities=15% Similarity=0.148 Sum_probs=96.1
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccC-CCCCce
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRN-DDFGSC 128 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~-~~~~~~ 128 (368)
...+++|.+||||-.++.++..+-.. .+.. +-+|...|. |.--..+ ..++-.+ .+. .+..-.
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~-------~~~~--~~~V~v~Di-----np~mL~v--gkqRa~~-~~l~~~~~~~ 162 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQ-------FGDR--ESKVTVLDI-----NPHMLAV--GKQRAKK-RPLKASSRVE 162 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccc-------cCCC--CceEEEEeC-----CHHHHHH--HHHHHhh-cCCCcCCceE
Confidence 35999999999999999998776322 1111 245555555 4322111 1111111 010 111123
Q ss_pred eeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047625 129 FIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLN 208 (368)
Q Consensus 129 f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~ 208 (368)
|+.+.. ..--||++++|...+++.+.-..+++.. |+
T Consensus 163 w~~~dA---E~LpFdd~s~D~yTiafGIRN~th~~k~-----------------------------------------l~ 198 (296)
T KOG1540|consen 163 WVEGDA---EDLPFDDDSFDAYTIAFGIRNVTHIQKA-----------------------------------------LR 198 (296)
T ss_pred EEeCCc---ccCCCCCCcceeEEEecceecCCCHHHH-----------------------------------------HH
Confidence 443333 5566999999999999988765544442 24
Q ss_pred HHHHHhccCceEEEEeecCCC-c-cchHHH--------HHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhc
Q 047625 209 FRWEELKIGGRMILNFIGNDK-H-HTGVFE--------LMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIERE 278 (368)
Q Consensus 209 ~Ra~ELkpGG~lvl~~~g~~~-e-~~~~~~--------~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~ 278 (368)
--++-||||||+.+.-+.+-+ + ...+++ .+.+.+....+.+.+=-+-+. -||+.+|+...++++
T Consensus 199 EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~------rfp~qe~f~~mieda 272 (296)
T KOG1540|consen 199 EAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR------RFPPQEEFASMIEDA 272 (296)
T ss_pred HHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh------cCCCHHHHHHHHHHc
Confidence 445679999999998888766 1 111111 122222222122211111111 479999999999999
Q ss_pred CceeEeE
Q 047625 279 GSFNIHQ 285 (368)
Q Consensus 279 GsF~I~~ 285 (368)
| |....
T Consensus 273 G-F~~~~ 278 (296)
T KOG1540|consen 273 G-FSSVN 278 (296)
T ss_pred C-Ccccc
Confidence 9 88765
No 45
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.05 E-value=5.3e-05 Score=69.49 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=57.0
Q ss_pred CCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEE
Q 047625 144 PCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILN 223 (368)
Q Consensus 144 ~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~ 223 (368)
++++|++++..++|+..+ ...+|+...+-|+|||.+++.
T Consensus 110 ~~~~D~i~~~~~l~~~~~-----------------------------------------~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 110 AKSFDVVTCMEVLEHVPD-----------------------------------------PQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred CCCccEEEehhHHHhCCC-----------------------------------------HHHHHHHHHHhcCCCcEEEEE
Confidence 478999999988887422 123678888899999999987
Q ss_pred eecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEEE
Q 047625 224 FIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETS 289 (368)
Q Consensus 224 ~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~ 289 (368)
...+.. ...+..+.. .++.. +.... .......+.+++++.+++++.| |+|..+..+
T Consensus 149 ~~~~~~--~~~~~~~~~--~~~~~-~~~~~----~~~~~~~~~~~~~l~~~l~~~G-~~i~~~~~~ 204 (224)
T TIGR01983 149 TINRTP--KSYLLAIVG--AEYIL-RIVPK----GTHDWEKFIKPSELTSWLESAG-LRVKDVKGL 204 (224)
T ss_pred ecCCCc--hHHHHHHHh--hhhhh-hcCCC----CcCChhhcCCHHHHHHHHHHcC-CeeeeeeeE
Confidence 764432 111111000 01110 11110 0011123568899999999999 999887654
No 46
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.03 E-value=3.1e-05 Score=70.21 Aligned_cols=77 Identities=9% Similarity=0.092 Sum_probs=51.1
Q ss_pred CCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEE
Q 047625 144 PCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILN 223 (368)
Q Consensus 144 ~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~ 223 (368)
++++|+++|+.++||++. .|+..+++..++-|+|||++++.
T Consensus 92 ~~~fD~I~~~~~~~~~~~---------------------------------------~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 NEDYDFIFSTVVFMFLQA---------------------------------------GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cCCCCEEEEecccccCCH---------------------------------------HHHHHHHHHHHHHhCCCcEEEEE
Confidence 468999999999999532 13445788889999999996665
Q ss_pred eecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEE
Q 047625 224 FIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLE 287 (368)
Q Consensus 224 ~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le 287 (368)
..-..+.. ..| .. +-+-.+++|+.+.++ + |++.+.+
T Consensus 133 ~~~~~~~~---------------~~~---------~~-~~~~~~~~el~~~f~--~-~~~~~~~ 168 (195)
T TIGR00477 133 AAMDTADY---------------PCH---------MP-FSFTFKEDELRQYYA--D-WELLKYN 168 (195)
T ss_pred EecccCCC---------------CCC---------CC-cCccCCHHHHHHHhC--C-CeEEEee
Confidence 43222200 001 11 125678999999885 4 8877765
No 47
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.03 E-value=2.7e-05 Score=73.02 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhccCceEEEEeecCCCccchHHH-HHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCc
Q 047625 202 DFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFE-LMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGS 280 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~-~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~Gs 280 (368)
|...||.+..+-|||||+|+++..-|.- ....-. .+.+.+..+|-.|--..+ -|.+|+|+..+++.++
T Consensus 173 dp~~~l~~l~~~lkP~G~lfittinrt~-lS~~~~i~~~E~vl~ivp~Gth~~e---------kfi~p~e~~~~l~~~~- 241 (282)
T KOG1270|consen 173 DPQEFLNCLSALLKPNGRLFITTINRTI-LSFAGTIFLAEIVLRIVPKGTHTWE---------KFINPEELTSILNANG- 241 (282)
T ss_pred CHHHHHHHHHHHhCCCCceEeeehhhhH-HHhhccccHHHHHHHhcCCCCcCHH---------HcCCHHHHHHHHHhcC-
Confidence 5666999999999999999999986653 111111 233444447777754444 6789999999999997
Q ss_pred eeEeEEE
Q 047625 281 FNIHQLE 287 (368)
Q Consensus 281 F~I~~le 287 (368)
+++..+.
T Consensus 242 ~~v~~v~ 248 (282)
T KOG1270|consen 242 AQVNDVV 248 (282)
T ss_pred cchhhhh
Confidence 7776653
No 48
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.02 E-value=0.00023 Score=65.50 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=25.3
Q ss_pred cccccCCHHHHHHHHHhcCceeEeEEEEEeec
Q 047625 261 YPIYYPCVEEVRQVIEREGSFNIHQLETSHIS 292 (368)
Q Consensus 261 ~P~y~ps~~E~~~~l~~~GsF~I~~le~~~~~ 292 (368)
.+.++.+.+++.+.++..| |++...+.+...
T Consensus 188 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~ 218 (230)
T PRK07580 188 TRIYPHREKGIRRALAAAG-FKVVRTERISSG 218 (230)
T ss_pred CCccccCHHHHHHHHHHCC-CceEeeeeccch
Confidence 4567789999999999999 999888766543
No 49
>PRK05785 hypothetical protein; Provisional
Probab=98.01 E-value=0.00013 Score=67.80 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=45.1
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
.-+|+|+|||+|.++..+.+.. . .+|+--|+- -+.-.+.+. . .-+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~---------------~-~~v~gvD~S-~~Ml~~a~~--------------~---~~~- 96 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF---------------K-YYVVALDYA-ENMLKMNLV--------------A---DDK- 96 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc---------------C-CEEEEECCC-HHHHHHHHh--------------c---cce-
Confidence 5799999999998876653321 1 355555652 111111110 0 011
Q ss_pred eecCCCcccccCCCCccceEEcccccccccC
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQ 161 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWls~ 161 (368)
+-+++..--||++|+|+++|+.++||+.+
T Consensus 97 --~~~d~~~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 97 --VVGSFEALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred --EEechhhCCCCCCCEEEEEecChhhccCC
Confidence 23445555678999999999999999654
No 50
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.00 E-value=2.8e-05 Score=74.65 Aligned_cols=149 Identities=20% Similarity=0.249 Sum_probs=97.1
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
--+|+|+||+.|.-++.+... .| -.|+=-| |+-.|..-|+-+..+.. ....+|.
T Consensus 116 gk~VLDIGC~nGY~~frM~~~---------------GA-~~ViGiD-P~~lf~~QF~~i~~~lg---------~~~~~~~ 169 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR---------------GA-KSVIGID-PSPLFYLQFEAIKHFLG---------QDPPVFE 169 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc---------------CC-CEEEEEC-CChHHHHHHHHHHHHhC---------CCccEEE
Confidence 369999999999887766422 13 2333333 55567666666544321 1134554
Q ss_pred eecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFR 210 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~R 210 (368)
..++ .+.|-+.+++|.|+|.-.|=. ..+ |-. .|+.-
T Consensus 170 lplg---vE~Lp~~~~FDtVF~MGVLYH-------------------------rr~-Pl~---------------~L~~L 205 (315)
T PF08003_consen 170 LPLG---VEDLPNLGAFDTVFSMGVLYH-------------------------RRS-PLD---------------HLKQL 205 (315)
T ss_pred cCcc---hhhccccCCcCEEEEeeehhc-------------------------cCC-HHH---------------HHHHH
Confidence 4333 344444789999998755533 222 221 46777
Q ss_pred HHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeE
Q 047625 211 WEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQ 285 (368)
Q Consensus 211 a~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~ 285 (368)
...|+|||.||+++..-+.+.. .-++..+.+..|+.-|+.||...+..+++.+| |+-.+
T Consensus 206 k~~L~~gGeLvLETlvi~g~~~---------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~v~ 264 (315)
T PF08003_consen 206 KDSLRPGGELVLETLVIDGDEN---------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKDVR 264 (315)
T ss_pred HHhhCCCCEEEEEEeeecCCCc---------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-CceEE
Confidence 8899999999999986543111 12355556778888899999999999999999 87433
No 51
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.99 E-value=7.5e-05 Score=69.11 Aligned_cols=95 Identities=13% Similarity=0.207 Sum_probs=58.4
Q ss_pred CCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEE
Q 047625 143 PPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMIL 222 (368)
Q Consensus 143 P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl 222 (368)
+++.+|+++++..+++..+ ...+|+...+-|+|||++++
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~-----------------------------------------~~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPD-----------------------------------------PASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred cCCCccEEEEhhHhhccCC-----------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 5588999999888877422 11357888889999999999
Q ss_pred EeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEE
Q 047625 223 NFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLET 288 (368)
Q Consensus 223 ~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~ 288 (368)
...++.. ......... .+.+..+ ... .....-.+.+++++.+++++.| |++.....
T Consensus 150 ~~~~~~~-~~~~~~~~~---~~~~~~~-~~~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~~ 205 (233)
T PRK05134 150 STLNRNL-KSYLLAIVG---AEYVLRM-LPK----GTHDYKKFIKPSELAAWLRQAG-LEVQDITG 205 (233)
T ss_pred EecCCCh-HHHHHHHhh---HHHHhhh-cCc----ccCchhhcCCHHHHHHHHHHCC-CeEeeeee
Confidence 8776433 111111110 1111111 110 0111224678999999999999 99887754
No 52
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.97 E-value=3.3e-05 Score=74.24 Aligned_cols=76 Identities=12% Similarity=0.172 Sum_probs=52.7
Q ss_pred CCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEE
Q 047625 144 PCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILN 223 (368)
Q Consensus 144 ~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~ 223 (368)
++++|+|+|..++|+++. .++..+|+.-.+-|+|||++++.
T Consensus 182 ~~~fD~I~~~~vl~~l~~---------------------------------------~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNR---------------------------------------ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred cCCccEEEEcchhhhCCH---------------------------------------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 689999999999999631 14455788889999999997775
Q ss_pred eecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcc-cccCCHHHHHHHHHhcCceeEeEEE
Q 047625 224 FIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYP-IYYPCVEEVRQVIEREGSFNIHQLE 287 (368)
Q Consensus 224 ~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P-~y~ps~~E~~~~l~~~GsF~I~~le 287 (368)
.....++. . ...| -+..+++|+++.++. |+|.+.+
T Consensus 223 ~~~~~~~~-----------------~---------~~~p~~~~~~~~el~~~~~~---~~i~~~~ 258 (287)
T PRK12335 223 CAMDTEDY-----------------P---------CPMPFSFTFKEGELKDYYQD---WEIVKYN 258 (287)
T ss_pred EecccccC-----------------C---------CCCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence 53322200 0 1123 255779999998853 8887764
No 53
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.97 E-value=3.5e-05 Score=69.56 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=23.7
Q ss_pred cccCCHHHHHHHHHhcCceeEeEEEEEe
Q 047625 263 IYYPCVEEVRQVIEREGSFNIHQLETSH 290 (368)
Q Consensus 263 ~y~ps~~E~~~~l~~~GsF~I~~le~~~ 290 (368)
..+++.+++.+++++.| |+|...+.+.
T Consensus 143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 143 IHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred cccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 46889999999999999 9998887763
No 54
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.97 E-value=5.7e-05 Score=77.54 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=54.0
Q ss_pred CCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEE
Q 047625 142 FPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMI 221 (368)
Q Consensus 142 ~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lv 221 (368)
+|++++|+|++..++||++. .++..+|+..++-|||||+|+
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~---------------------------------------~~~~~~l~~~~r~Lk~gG~l~ 139 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSD---------------------------------------KEVENLAERMVKWLKVGGYIF 139 (475)
T ss_pred CCCCCEEEEehhhhHHhCCH---------------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence 68899999999999999632 133457888999999999998
Q ss_pred EEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCcee
Q 047625 222 LNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFN 282 (368)
Q Consensus 222 l~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~ 282 (368)
+.=..-.+ .+ .+....-|..+++..++..++.++| |.
T Consensus 140 ~~d~~~~~------------------~~-----~~~~~~~~~~~~~~~~~~~~f~~~~-~~ 176 (475)
T PLN02336 140 FRESCFHQ------------------SG-----DSKRKNNPTHYREPRFYTKVFKECH-TR 176 (475)
T ss_pred EEeccCCC------------------CC-----cccccCCCCeecChHHHHHHHHHhe-ec
Confidence 74211111 01 0111233667788899999998887 44
No 55
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.94 E-value=6.9e-05 Score=68.83 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=67.3
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
.-+|+|+|||+|..|..+++.. .+.-.|+--|+- +.+ .++ ++
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~--------------~~~~~V~aVDi~--~~~----~~~----------------~v-- 93 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQI--------------GDKGRVIACDIL--PMD----PIV----------------GV-- 93 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHc--------------CCCceEEEEecc--ccc----CCC----------------Cc--
Confidence 4689999999998777665443 122456656652 211 111 11
Q ss_pred eecCCCcccc--------cCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGR--------LFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESD 202 (368)
Q Consensus 131 ~~vp~SFy~~--------l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D 202 (368)
..+-+++.+. -++++++|+++|..+.||... |. .| . +.. ...
T Consensus 94 ~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d--------------------~----~~~---~~~ 143 (209)
T PRK11188 94 DFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD--------------------I----PRA---MYL 143 (209)
T ss_pred EEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH--------------------H----HHH---HHH
Confidence 1223344432 256789999999999999331 11 00 0 000 111
Q ss_pred HHHHHHHHHHHhccCceEEEEeecCCC
Q 047625 203 FTSFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 203 ~~~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
....|+.-.+-|+|||+|++..+..+.
T Consensus 144 ~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 144 VELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 356889999999999999998776655
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.89 E-value=0.00013 Score=65.06 Aligned_cols=125 Identities=14% Similarity=-0.020 Sum_probs=66.1
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
.-+|+|+|||+|..++.+... .+ +++-.|+- -..+-..-. ... ..+ .+ +
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~---------------~~--~v~~vD~s---~~~~~~a~~----~~~-~~~----~~--~ 68 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGK---------------GK--CILTTDIN---PFAVKELRE----NAK-LNN----VG--L 68 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhc---------------CC--EEEEEECC---HHHHHHHHH----HHH-HcC----Cc--e
Confidence 368999999999877665421 12 67777772 122111100 000 010 11 2
Q ss_pred eecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFR 210 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~R 210 (368)
..+.+++++. +.+++|+++|....|.....+.. . .|.+- .+. .. + .-...+..||+.-
T Consensus 69 ~~~~~d~~~~--~~~~fD~Vi~n~p~~~~~~~~~~-~------~~~~~-~~~-~~--~---------~~~~~~~~~l~~~ 126 (179)
T TIGR00537 69 DVVMTDLFKG--VRGKFDVILFNPPYLPLEDDLRR-G------DWLDV-AID-GG--K---------DGRKVIDRFLDEL 126 (179)
T ss_pred EEEEcccccc--cCCcccEEEECCCCCCCcchhcc-c------chhhh-hhh-cC--C---------chHHHHHHHHHhH
Confidence 2234455553 24599999999888765432221 0 00000 000 00 0 0012245689999
Q ss_pred HHHhccCceEEEEeecCC
Q 047625 211 WEELKIGGRMILNFIGND 228 (368)
Q Consensus 211 a~ELkpGG~lvl~~~g~~ 228 (368)
.+-|+|||++++...+..
T Consensus 127 ~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 127 PEILKEGGRVQLIQSSLN 144 (179)
T ss_pred HHhhCCCCEEEEEEeccC
Confidence 999999999999875443
No 57
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.87 E-value=4.5e-05 Score=73.93 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=75.7
Q ss_pred HHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhH
Q 047625 34 PLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFY 113 (368)
Q Consensus 34 ~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~ 113 (368)
.+|++..+++.... +...+|+|+|||+|..|..+++.+. .+ .+++--|+.. ++=...+.
T Consensus 48 ~il~~~~~~ia~~~-~~~~~iLELGcGtG~~t~~Ll~~l~-------------~~-~~~~~iDiS~-~mL~~a~~----- 106 (301)
T TIGR03438 48 AILERHADEIAAAT-GAGCELVELGSGSSRKTRLLLDALR-------------QP-ARYVPIDISA-DALKESAA----- 106 (301)
T ss_pred HHHHHHHHHHHHhh-CCCCeEEecCCCcchhHHHHHHhhc-------------cC-CeEEEEECCH-HHHHHHHH-----
Confidence 34444444443221 2347899999999999998887651 02 6677667742 22111111
Q ss_pred HHhhhhccCCCCCceeeeecCCCccccc-CCCC----ccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCC
Q 047625 114 ERLKTEKRNDDFGSCFIGVAPGSLYGRL-FPPC----FLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSP 188 (368)
Q Consensus 114 ~~~~~~~~~~~~~~~f~~~vp~SFy~~l-~P~~----sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~ 188 (368)
++.. ..+.+=+.++-|+|.+-+ +|.. ...++++.+++++++ |.
T Consensus 107 -~l~~-----~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~--~~------------------------ 154 (301)
T TIGR03438 107 -ALAA-----DYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFT--PE------------------------ 154 (301)
T ss_pred -HHHh-----hCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCC--HH------------------------
Confidence 1110 012233445666776532 3322 345666667788753 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCC
Q 047625 189 SNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 189 ~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
|...||+.-++.|+|||+|++.+-...+
T Consensus 155 -------------e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 155 -------------EAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred -------------HHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 3456899999999999999998866655
No 58
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.86 E-value=6.2e-05 Score=67.61 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=30.5
Q ss_pred HHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcc
Q 047625 207 LNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYP 262 (368)
Q Consensus 207 L~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P 262 (368)
++.-.+-|+|||++++.. |... ...+....+.+...| +++.+.+++..|
T Consensus 125 ~~~~~~~LkpgG~lvi~~-~~~~-----~~~~~~~~e~~~~~~-~~~~~~~~~~~~ 173 (181)
T TIGR00138 125 LELTLNLLKVGGYFLAYK-GKKY-----LDEIEEAKRKCQVLG-VEPLEVPPLTGP 173 (181)
T ss_pred HHHHHHhcCCCCEEEEEc-CCCc-----HHHHHHHHHhhhhcC-ceEeeccccCCC
Confidence 444467799999999885 3332 122223335555567 666677777777
No 59
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.83 E-value=0.00027 Score=65.58 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=37.7
Q ss_pred cCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceE
Q 047625 141 LFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRM 220 (368)
Q Consensus 141 l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~l 220 (368)
+-+++|||+|.++-|+||+ |+.+|.+.-.+-||+.|.+
T Consensus 95 ~g~e~SVDlI~~Aqa~HWF------------------------------------------dle~fy~~~~rvLRk~Gg~ 132 (261)
T KOG3010|consen 95 LGGEESVDLITAAQAVHWF------------------------------------------DLERFYKEAYRVLRKDGGL 132 (261)
T ss_pred cCCCcceeeehhhhhHHhh------------------------------------------chHHHHHHHHHHcCCCCCE
Confidence 3358999999999999992 5677888999999998876
Q ss_pred EEEeecCCC
Q 047625 221 ILNFIGNDK 229 (368)
Q Consensus 221 vl~~~g~~~ 229 (368)
++.-+=.++
T Consensus 133 iavW~Y~dd 141 (261)
T KOG3010|consen 133 IAVWNYNDD 141 (261)
T ss_pred EEEEEccCC
Confidence 666665544
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.81 E-value=5.9e-05 Score=68.37 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=16.8
Q ss_pred CceEEeeecCCCCCCchHHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPTW 70 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~ 70 (368)
++-+++|+|||.|+||+-+.+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~ 50 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLAS 50 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHHHH
Confidence 357999999999999998754
No 61
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.76 E-value=0.00029 Score=67.08 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=33.7
Q ss_pred CCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEE
Q 047625 142 FPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMI 221 (368)
Q Consensus 142 ~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lv 221 (368)
+|.+++|+|+|.++|||++. | +....|+.-++.|+|||+|+
T Consensus 199 ~~~~~fD~I~crnvl~yf~~-~--------------------------------------~~~~~l~~l~~~L~pGG~L~ 239 (264)
T smart00138 199 PPLGDFDLIFCRNVLIYFDE-P--------------------------------------TQRKLLNRFAEALKPGGYLF 239 (264)
T ss_pred CccCCCCEEEechhHHhCCH-H--------------------------------------HHHHHHHHHHHHhCCCeEEE
Confidence 46889999999999999643 1 22236788889999999999
Q ss_pred EE
Q 047625 222 LN 223 (368)
Q Consensus 222 l~ 223 (368)
+.
T Consensus 240 lg 241 (264)
T smart00138 240 LG 241 (264)
T ss_pred EE
Confidence 74
No 62
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.72 E-value=8.7e-05 Score=69.66 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEe
Q 047625 188 PSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 188 ~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~ 224 (368)
+.+.++..+.+..-++..+++.-++-|||||++.+..
T Consensus 134 ~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 134 ENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred cChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 4456777788888999999999999999999999887
No 63
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.70 E-value=0.00043 Score=64.28 Aligned_cols=198 Identities=17% Similarity=0.200 Sum_probs=110.9
Q ss_pred hHHhhCHHHHHHHHH--------hHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCC
Q 047625 17 SYAKNSAPPREAILK--------AKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPP 88 (368)
Q Consensus 17 sY~~nS~~Q~~~~~~--------~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p 88 (368)
-|.+++..+..+.-. -..+|.+...++..-....+.+|+++|||.|...+.+++.. +.+
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~-------------~n~ 96 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTS-------------PNN 96 (264)
T ss_pred hhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcC-------------CCC
Confidence 455555555554432 34567776776654322234599999999997777665442 334
Q ss_pred cceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCc--eeeeecCCCcccccCCCCccceEEcccccccccCCcccc
Q 047625 89 ILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGS--CFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKEL 166 (368)
Q Consensus 89 ~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~--~f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~ 166 (368)
.+.+|..|-..| -..+ +++..+ ..... .|+.-.-++=...-++++|+|++..-+. ||-+|+.-
T Consensus 97 ~l~v~acDfsp~-----Ai~~------vk~~~~-~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~pek 161 (264)
T KOG2361|consen 97 RLKVYACDFSPR-----AIEL------VKKSSG-YDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHPEK 161 (264)
T ss_pred CeEEEEcCCChH-----HHHH------HHhccc-cchhhhcccceeccchhccCCCCcCccceEEEEEE---EeccChHH
Confidence 488887766322 1111 111110 00011 1221111111344555677776654443 23344321
Q ss_pred cccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHH
Q 047625 167 VSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMV 246 (368)
Q Consensus 167 ~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~ 246 (368)
+..-+....+-|||||.|++-=.|+.+ ...+ +-.
T Consensus 162 ------------------------------------~~~a~~nl~~llKPGG~llfrDYg~~D-laql--------RF~- 195 (264)
T KOG2361|consen 162 ------------------------------------MQSVIKNLRTLLKPGGSLLFRDYGRYD-LAQL--------RFK- 195 (264)
T ss_pred ------------------------------------HHHHHHHHHHHhCCCcEEEEeecccch-HHHH--------hcc-
Confidence 233467788899999999999999987 1111 111
Q ss_pred HcCCCchhhh-ccCCcccccCCHHHHHHHHHhcCceeEeEEEEE
Q 047625 247 YEGLIEESKL-ESFNYPIYYPCVEEVRQVIEREGSFNIHQLETS 289 (368)
Q Consensus 247 ~eGli~~e~~-d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~ 289 (368)
.+..|+...+ .+=-.+.||.+.+|+..++..+| |...+++..
T Consensus 196 ~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~ 238 (264)
T KOG2361|consen 196 KGQCISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD 238 (264)
T ss_pred CCceeecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence 2222333221 12236889999999999999999 887776654
No 64
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.67 E-value=0.00061 Score=63.53 Aligned_cols=103 Identities=23% Similarity=0.290 Sum_probs=69.3
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
..-+|+|+|+|+|..+..++... |..++..=|||. ...... . . +.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~---------------P~l~~~v~Dlp~-----v~~~~~---~--~--------~r-- 144 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAY---------------PNLRATVFDLPE-----VIEQAK---E--A--------DR-- 144 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHS---------------TTSEEEEEE-HH-----HHCCHH---H--T--------TT--
T ss_pred CccEEEeccCcchHHHHHHHHHC---------------CCCcceeeccHh-----hhhccc---c--c--------cc--
Confidence 45689999999997776664432 678999999983 111111 1 0 12
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
+.-+||+|+ .-+|. .|+++-.+.||=.+ + +|-..+|+.
T Consensus 145 v~~~~gd~f-~~~P~--~D~~~l~~vLh~~~---d------------------------------------~~~~~iL~~ 182 (241)
T PF00891_consen 145 VEFVPGDFF-DPLPV--ADVYLLRHVLHDWS---D------------------------------------EDCVKILRN 182 (241)
T ss_dssp EEEEES-TT-TCCSS--ESEEEEESSGGGS----H------------------------------------HHHHHHHHH
T ss_pred cccccccHH-hhhcc--ccceeeehhhhhcc---h------------------------------------HHHHHHHHH
Confidence 225999999 77786 99999999996422 1 234558999
Q ss_pred HHHHhccC--ceEEEEeecCCC
Q 047625 210 RWEELKIG--GRMILNFIGNDK 229 (368)
Q Consensus 210 Ra~ELkpG--G~lvl~~~g~~~ 229 (368)
-++.|+|| |++++.=.-.++
T Consensus 183 ~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 183 AAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp HHHHSEECTTEEEEEEEEEECS
T ss_pred HHHHhCCCCCCeEEEEeeccCC
Confidence 99999999 998887665444
No 65
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.67 E-value=0.00012 Score=72.28 Aligned_cols=107 Identities=15% Similarity=0.172 Sum_probs=64.8
Q ss_pred eEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceeee
Q 047625 52 IRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIG 131 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 131 (368)
-+|+|+|||+|..++.+.... |..+|+..|.- -..+-.. ..... .++ ...-
T Consensus 198 g~VLDlGCG~G~ls~~la~~~---------------p~~~v~~vDis---~~Al~~A----~~nl~-~n~---l~~~--- 248 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS---------------PKIRLTLSDVS---AAALESS----RATLA-ANG---LEGE--- 248 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC---------------CCCEEEEEECC---HHHHHHH----HHHHH-HcC---CCCE---
Confidence 589999999998766554332 45788888882 2222111 11111 111 0111
Q ss_pred ecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047625 132 VAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRW 211 (368)
Q Consensus 132 ~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra 211 (368)
.+.+..+.. .++++|+|+|.-.+||.-.. . ..+...|++.-+
T Consensus 249 ~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~-------------------------~-----------~~~~~~~i~~a~ 290 (342)
T PRK09489 249 VFASNVFSD--IKGRFDMIISNPPFHDGIQT-------------------------S-----------LDAAQTLIRGAV 290 (342)
T ss_pred EEEcccccc--cCCCccEEEECCCccCCccc-------------------------c-----------HHHHHHHHHHHH
Confidence 123333442 35789999999999972110 0 124566899999
Q ss_pred HHhccCceEEEEee
Q 047625 212 EELKIGGRMILNFI 225 (368)
Q Consensus 212 ~ELkpGG~lvl~~~ 225 (368)
+.|+|||+|++..-
T Consensus 291 ~~LkpgG~L~iVan 304 (342)
T PRK09489 291 RHLNSGGELRIVAN 304 (342)
T ss_pred HhcCcCCEEEEEEe
Confidence 99999999998763
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.64 E-value=0.00045 Score=62.51 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=64.4
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
.-+|+|+|||+|..++.+.... |..+++--|+- -..+-+.. ..... ....++-
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~---------------p~~~v~gvD~~---~~~l~~a~----~~~~~----~~l~ni~- 69 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN---------------PDKNFLGIEIH---TPIVLAAN----NKANK----LGLKNLH- 69 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC---------------CCCCEEEEEee---HHHHHHHH----HHHHH----hCCCCEE-
Confidence 3589999999998777665332 44566666662 11111100 00100 1112322
Q ss_pred eecCCCcc---cccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLY---GRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFL 207 (368)
Q Consensus 131 ~~vp~SFy---~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL 207 (368)
.+-++.. ..++|++++|.++.....+|..+ ... |..+ .-..||
T Consensus 70 -~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~-~h~-----------~~r~---------------------~~~~~l 115 (194)
T TIGR00091 70 -VLCGDANELLDKFFPDGSLSKVFLNFPDPWPKK-RHN-----------KRRI---------------------TQPHFL 115 (194)
T ss_pred -EEccCHHHHHHhhCCCCceeEEEEECCCcCCCC-Ccc-----------cccc---------------------CCHHHH
Confidence 2333332 34577789999999988888332 110 0000 013478
Q ss_pred HHHHHHhccCceEEEEe
Q 047625 208 NFRWEELKIGGRMILNF 224 (368)
Q Consensus 208 ~~Ra~ELkpGG~lvl~~ 224 (368)
+.-++-|||||++.+..
T Consensus 116 ~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 116 KEYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHHHhCCCCEEEEEe
Confidence 89999999999999987
No 67
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.63 E-value=0.00025 Score=62.84 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=64.7
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
.-+|+|+|||+|..++.+.... |...|+..|. +-..+-..- .... . ....+ +
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~---------------~~~~v~~vDi---~~~a~~~a~----~n~~-~---n~~~~--v 83 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRG---------------PDAKVTAVDI---NPDALELAK----RNAE-R---NGLEN--V 83 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTS---------------TCEEEEEEES---BHHHHHHHH----HHHH-H---TTCTT--E
T ss_pred CCeEEEecCChHHHHHHHHHhC---------------CCCEEEEEcC---CHHHHHHHH----HHHH-h---cCccc--c
Confidence 5789999999998887664332 5567888888 222221111 0111 1 11123 4
Q ss_pred eecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFR 210 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~R 210 (368)
..+....++.+- ++++|+++|.==+|+ . ... -..-+..|++.-
T Consensus 84 ~~~~~d~~~~~~-~~~fD~Iv~NPP~~~---------~-------------------~~~--------~~~~~~~~i~~a 126 (170)
T PF05175_consen 84 EVVQSDLFEALP-DGKFDLIVSNPPFHA---------G-------------------GDD--------GLDLLRDFIEQA 126 (170)
T ss_dssp EEEESSTTTTCC-TTCEEEEEE---SBT---------T-------------------SHC--------HHHHHHHHHHHH
T ss_pred cccccccccccc-ccceeEEEEccchhc---------c-------------------ccc--------chhhHHHHHHHH
Confidence 455666676554 799999998522222 0 100 012345578888
Q ss_pred HHHhccCceEEEEee
Q 047625 211 WEELKIGGRMILNFI 225 (368)
Q Consensus 211 a~ELkpGG~lvl~~~ 225 (368)
.+-|+|||+|++..-
T Consensus 127 ~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 127 RRYLKPGGRLFLVIN 141 (170)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHhccCCCEEEEEee
Confidence 999999999988664
No 68
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.63 E-value=0.0002 Score=65.52 Aligned_cols=105 Identities=20% Similarity=0.264 Sum_probs=57.2
Q ss_pred CCchHHhhCHHHHHHHHHhHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEE
Q 047625 14 GDNSYAKNSAPPREAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAF 93 (368)
Q Consensus 14 g~~sY~~nS~~Q~~~~~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~ 93 (368)
|..-..+|. .+. .......++.+.+..+ +...+|+|+|||+|.++..+...+ |..+++
T Consensus 14 g~~~~~rn~-~~~-~~~~~~~~~~~~l~~~-----~~~~~VLDiGCG~G~~~~~L~~~~---------------~~~~v~ 71 (204)
T TIGR03587 14 GKEYIDRNS-RQS-LVAAKLAMFARALNRL-----PKIASILELGANIGMNLAALKRLL---------------PFKHIY 71 (204)
T ss_pred cchhhhccc-cHH-HHHHHHHHHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHHhC---------------CCCeEE
Confidence 555444444 332 2334455556555533 345689999999997777664332 224566
Q ss_pred ecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceeeeecCCCcccccCCCCccceEEcccccccc
Q 047625 94 LNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWL 159 (368)
Q Consensus 94 ~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vp~SFy~~l~P~~sid~~~S~~alhWl 159 (368)
--|+-. +.-...+.. . . +.-+ +.++..+ .+|++++|+|++..++|++
T Consensus 72 giDiS~-~~l~~A~~~------~------~--~~~~---~~~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 72 GVEINE-YAVEKAKAY------L------P--NINI---IQGSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred EEECCH-HHHHHHHhh------C------C--CCcE---EEeeccC-CCCCCCEEEEEECChhhhC
Confidence 556621 111111110 0 0 1112 2334444 6789999999999999875
No 69
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.61 E-value=0.0002 Score=64.75 Aligned_cols=94 Identities=20% Similarity=0.271 Sum_probs=63.4
Q ss_pred CCceEEeeecCCCCCCchHHH------------HHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHh
Q 047625 49 PDCIRFTDMGCSSGPNAFLPT------------WQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERL 116 (368)
Q Consensus 49 ~~~~~IaD~GCs~G~ns~~~~------------~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~ 116 (368)
+..-+++|+|||.|.+|..+. ...|+.-++++. ..|.+++..-|+|.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp~----------------- 100 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA----GLPHVEWIQADVPE----------------- 100 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TTT-----------------
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCCC-----------------
Confidence 346889999999999998764 344444444432 22457777777762
Q ss_pred hhhccCCCCCceeeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHH
Q 047625 117 KTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYL 196 (368)
Q Consensus 117 ~~~~~~~~~~~~f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~ 196 (368)
..|++++|+++-+-.+++|+..
T Consensus 101 ------------------------~~P~~~FDLIV~SEVlYYL~~~---------------------------------- 122 (201)
T PF05401_consen 101 ------------------------FWPEGRFDLIVLSEVLYYLDDA---------------------------------- 122 (201)
T ss_dssp ---------------------------SS-EEEEEEES-GGGSSSH----------------------------------
T ss_pred ------------------------CCCCCCeeEEEEehHhHcCCCH----------------------------------
Confidence 3578999999999999997541
Q ss_pred HHHHHHHHHHHHHHHHHhccCceEEEEee
Q 047625 197 DQFESDFTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 197 ~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
.|+..++..-...|+|||.||+.-.
T Consensus 123 ----~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 123 ----EDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ----HHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 2566788888999999999999765
No 70
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.60 E-value=0.0031 Score=61.59 Aligned_cols=28 Identities=14% Similarity=0.418 Sum_probs=23.4
Q ss_pred cccCCHHHHHHHHHhcCceeEeEEEEEee
Q 047625 263 IYYPCVEEVRQVIEREGSFNIHQLETSHI 291 (368)
Q Consensus 263 ~y~ps~~E~~~~l~~~GsF~I~~le~~~~ 291 (368)
.|+.+++|+++++++.| |+|...+....
T Consensus 275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~~ 302 (315)
T PLN02585 275 AYLHAEADVERALKKAG-WKVARREMTAT 302 (315)
T ss_pred eeeCCHHHHHHHHHHCC-CEEEEEEEeec
Confidence 46779999999999999 99988776543
No 71
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.57 E-value=0.00022 Score=62.62 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=60.2
Q ss_pred cCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceE
Q 047625 141 LFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRM 220 (368)
Q Consensus 141 l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~l 220 (368)
-++++++|++++.+++||+.+ ...+|+.-++-|||||+|
T Consensus 39 p~~~~~fD~v~~~~~l~~~~d-----------------------------------------~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 39 PFDDCEFDAVTMGYGLRNVVD-----------------------------------------RLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CCCCCCeeEEEecchhhcCCC-----------------------------------------HHHHHHHHHHHcCcCeEE
Confidence 367889999999999999632 123678889999999999
Q ss_pred EEEeecCCCc-cch-HHHHHHHHHHHHHHcCCCchhhhccCCc----ccccCCHHHHHHHHHhcCceeEeE
Q 047625 221 ILNFIGNDKH-HTG-VFELMGMVLNDMVYEGLIEESKLESFNY----PIYYPCVEEVRQVIEREGSFNIHQ 285 (368)
Q Consensus 221 vl~~~g~~~e-~~~-~~~~l~~al~~l~~eGli~~e~~d~f~~----P~y~ps~~E~~~~l~~~GsF~I~~ 285 (368)
++.-++..+. ... .+..... ...+.-|.+... .+.+.. =..|++++|+.++|+++| |+..+
T Consensus 78 ~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~ 144 (160)
T PLN02232 78 SILDFNKSNQSVTTFMQGWMID--NVVVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSAC 144 (160)
T ss_pred EEEECCCCChHHHHHHHHHHcc--chHhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcce
Confidence 9987776551 110 1100000 000000111110 111111 125799999999999999 87544
No 72
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.53 E-value=5.4e-05 Score=60.81 Aligned_cols=100 Identities=22% Similarity=0.241 Sum_probs=55.5
Q ss_pred EeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceeeeec
Q 047625 54 FTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGVA 133 (368)
Q Consensus 54 IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~v 133 (368)
|+|+|||+|.++..+.... +. .|+.++..-|+- -..|-. ....... ...+--|+.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~-----------~~~~~~~gvD~s---~~~l~~----~~~~~~~----~~~~~~~~~~D 57 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA-----------GPSSRVIGVDIS---PEMLEL----AKKRFSE----DGPKVRFVQAD 57 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------------SEEEEEES----HHHHHH----HHHHSHH----TTTTSEEEESC
T ss_pred CEEeecCCcHHHHHHHHHh-hh-----------cccceEEEEECC---HHHHHH----HHHhchh----cCCceEEEECC
Confidence 7999999999888877653 11 134677777772 222111 0011100 11122333333
Q ss_pred CCCcccccCCCCccceEEcccc-cccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047625 134 PGSLYGRLFPPCFLNLVYSSFC-LNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWE 212 (368)
Q Consensus 134 p~SFy~~l~P~~sid~~~S~~a-lhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ 212 (368)
... --++.+++|+++++.. +|++++ +++..+|+.-++
T Consensus 58 ~~~---l~~~~~~~D~v~~~~~~~~~~~~---------------------------------------~~~~~ll~~~~~ 95 (101)
T PF13649_consen 58 ARD---LPFSDGKFDLVVCSGLSLHHLSP---------------------------------------EELEALLRRIAR 95 (101)
T ss_dssp TTC---HHHHSSSEEEEEE-TTGGGGSSH---------------------------------------HHHHHHHHHHHH
T ss_pred HhH---CcccCCCeeEEEEcCCccCCCCH---------------------------------------HHHHHHHHHHHH
Confidence 322 2346779999999655 887432 256678999999
Q ss_pred HhccCc
Q 047625 213 ELKIGG 218 (368)
Q Consensus 213 ELkpGG 218 (368)
-|+|||
T Consensus 96 ~l~pgG 101 (101)
T PF13649_consen 96 LLRPGG 101 (101)
T ss_dssp TEEEEE
T ss_pred HhCCCC
Confidence 999998
No 73
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.42 E-value=0.00051 Score=68.66 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=62.9
Q ss_pred eEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceeee
Q 047625 52 IRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIG 131 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 131 (368)
.+|+|+|||+|..++.+.+.. |..+|+.-|.. ...+-.. ..... .++.....+ +.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~---------------P~~~V~~vD~S---~~Av~~A----~~N~~-~n~~~~~~~--v~ 284 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKN---------------PQAKVVFVDES---PMAVASS----RLNVE-TNMPEALDR--CE 284 (378)
T ss_pred CeEEEEeccccHHHHHHHHhC---------------CCCEEEEEECC---HHHHHHH----HHHHH-HcCcccCce--EE
Confidence 589999999998666554332 56889999983 1111111 11110 010000001 11
Q ss_pred ecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047625 132 VAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRW 211 (368)
Q Consensus 132 ~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra 211 (368)
.+.+..+..+ ++.++|+|+|.--+|+...+. .+ ...++++.-.
T Consensus 285 ~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~-------------------------~~-----------ia~~l~~~a~ 327 (378)
T PRK15001 285 FMINNALSGV-EPFRFNAVLCNPPFHQQHALT-------------------------DN-----------VAWEMFHHAR 327 (378)
T ss_pred EEEccccccC-CCCCEEEEEECcCcccCccCC-------------------------HH-----------HHHHHHHHHH
Confidence 2233344443 557899999987777632211 11 1123677778
Q ss_pred HHhccCceEEEEe
Q 047625 212 EELKIGGRMILNF 224 (368)
Q Consensus 212 ~ELkpGG~lvl~~ 224 (368)
+.|+|||+|+++.
T Consensus 328 ~~LkpGG~L~iV~ 340 (378)
T PRK15001 328 RCLKINGELYIVA 340 (378)
T ss_pred HhcccCCEEEEEE
Confidence 8999999999995
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.42 E-value=0.00057 Score=63.60 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEe
Q 047625 200 ESDFTSFLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 200 ~~D~~~FL~~Ra~ELkpGG~lvl~~ 224 (368)
..++..|++.-.+.|+|||++++..
T Consensus 193 ~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 193 LDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred HHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3566789999999999999999875
No 75
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.40 E-value=0.0009 Score=60.04 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeecCCC
Q 047625 201 SDFTSFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 201 ~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
.+...+|+.-.+-|+|||++++..+...+
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~~~~~~ 151 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKVFQGEE 151 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEccCcc
Confidence 35667899999999999999998754444
No 76
>PRK14967 putative methyltransferase; Provisional
Probab=97.37 E-value=0.0015 Score=60.28 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcC
Q 047625 201 SDFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREG 279 (368)
Q Consensus 201 ~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~G 279 (368)
.++..|++.-.+-|||||++++......+ . .++++.+...| +..+.+....+|+ -+..-....++++.|
T Consensus 136 ~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~----~----~~~~~~l~~~g-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (223)
T PRK14967 136 AVLDRLCDAAPALLAPGGSLLLVQSELSG----V----ERTLTRLSEAG-LDAEVVASQWIPF-GPVLRARAAWLERRG 204 (223)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccC----H----HHHHHHHHHCC-CCeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence 35677888889999999999987655433 1 12233333334 4454455555664 222223446678888
No 77
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.37 E-value=0.00037 Score=69.68 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=65.1
Q ss_pred eEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceeee
Q 047625 52 IRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIG 131 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 131 (368)
-.++|+|||+|..++.+.... |+..++--|+ +...+-+... .... ....++.+.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~---------------P~~~~iGIEI---~~~~i~~a~~----ka~~----~gL~NV~~i 177 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNN---------------PNKLFIGIEI---HTPSIEQVLK----QIEL----LNLKNLLII 177 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhC---------------CCCCEEEEEC---CHHHHHHHHH----HHHH----cCCCcEEEE
Confidence 489999999997776664332 5567776666 2222222111 1111 112344333
Q ss_pred ecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047625 132 VAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRW 211 (368)
Q Consensus 132 ~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra 211 (368)
-.-....-..+|++++|.++......| |. .. . ++. -...||+.-+
T Consensus 178 ~~DA~~ll~~~~~~s~D~I~lnFPdPW----~K-------------kr----------H-----RRl---v~~~fL~e~~ 222 (390)
T PRK14121 178 NYDARLLLELLPSNSVEKIFVHFPVPW----DK-------------KP----------H-----RRV---ISEDFLNEAL 222 (390)
T ss_pred ECCHHHhhhhCCCCceeEEEEeCCCCc----cc-------------cc----------h-----hhc---cHHHHHHHHH
Confidence 222222224689999999997665555 21 10 0 011 1245899999
Q ss_pred HHhccCceEEEEe
Q 047625 212 EELKIGGRMILNF 224 (368)
Q Consensus 212 ~ELkpGG~lvl~~ 224 (368)
+-|+|||.+.+.+
T Consensus 223 RvLkpGG~l~l~T 235 (390)
T PRK14121 223 RVLKPGGTLELRT 235 (390)
T ss_pred HHcCCCcEEEEEE
Confidence 9999999999988
No 78
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.35 E-value=0.001 Score=64.03 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhccCceEEEEee
Q 047625 202 DFTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
....|++.-.+-|+|||+++++++
T Consensus 229 ~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 229 LVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEC
Confidence 345688988999999999999885
No 79
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.33 E-value=0.00058 Score=61.72 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhccCceEEEEeec
Q 047625 204 TSFLNFRWEELKIGGRMILNFIG 226 (368)
Q Consensus 204 ~~FL~~Ra~ELkpGG~lvl~~~g 226 (368)
..|++..++-|+|||++++..+.
T Consensus 125 ~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 125 SDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCC
Confidence 34788999999999999988643
No 80
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.32 E-value=0.0059 Score=56.48 Aligned_cols=59 Identities=22% Similarity=0.283 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCcee
Q 047625 203 FTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFN 282 (368)
Q Consensus 203 ~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~ 282 (368)
..++++.-++-|+|||++++.+....++ ++ .| |-+.-+++|+++.+. .+ |+
T Consensus 134 R~~~~~~l~~lL~pgG~~~l~~~~~~~~-------------~~--~g------------Pp~~~~~~el~~~~~-~~-~~ 184 (218)
T PRK13255 134 RERYVQQLAALLPAGCRGLLVTLDYPQE-------------EL--AG------------PPFSVSDEEVEALYA-GC-FE 184 (218)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEEEeCCc-------------cC--CC------------CCCCCCHHHHHHHhc-CC-ce
Confidence 3456788899999999866655544330 00 12 446789999999885 33 88
Q ss_pred EeEEEEEe
Q 047625 283 IHQLETSH 290 (368)
Q Consensus 283 I~~le~~~ 290 (368)
|..++..+
T Consensus 185 i~~~~~~~ 192 (218)
T PRK13255 185 IELLERQD 192 (218)
T ss_pred EEEeeecc
Confidence 88887654
No 81
>PRK04266 fibrillarin; Provisional
Probab=97.28 E-value=0.0023 Score=59.58 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=18.2
Q ss_pred HHHHHHHHhccCceEEEEeecC
Q 047625 206 FLNFRWEELKIGGRMILNFIGN 227 (368)
Q Consensus 206 FL~~Ra~ELkpGG~lvl~~~g~ 227 (368)
+|+.-++-|||||++++++..+
T Consensus 158 ~L~~~~r~LKpGG~lvI~v~~~ 179 (226)
T PRK04266 158 AIDNAEFFLKDGGYLLLAIKAR 179 (226)
T ss_pred HHHHHHHhcCCCcEEEEEEecc
Confidence 5677788899999999987654
No 82
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.26 E-value=0.002 Score=57.75 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=24.2
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDL 97 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDL 97 (368)
...+|+|+|||+|..++.+.... |..+++.-|.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~---------------~~~~v~~vD~ 63 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF---------------PSLQVTAIER 63 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC---------------CCCEEEEEEC
Confidence 34689999999998888775432 3466777776
No 83
>PTZ00146 fibrillarin; Provisional
Probab=97.25 E-value=0.0027 Score=61.11 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=17.6
Q ss_pred eEEeeecCCCCCCchHHHHHH
Q 047625 52 IRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~~~i 72 (368)
.+|+|+|||+|..|..+...+
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiV 154 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLV 154 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHh
Confidence 699999999999887776544
No 84
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.23 E-value=0.0016 Score=59.39 Aligned_cols=153 Identities=15% Similarity=0.118 Sum_probs=89.8
Q ss_pred EEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceeeee
Q 047625 53 RFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGV 132 (368)
Q Consensus 53 ~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~ 132 (368)
+|+|+|||||--...+.+.+ |.+++-=+|+..+-+.++-.-+.... +.+ - .+++.+ -
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l---------------P~l~WqPSD~~~~~~~sI~a~~~~~~--~~N----v-~~P~~l-D 84 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL---------------PHLTWQPSDPDDNLRPSIRAWIAEAG--LPN----V-RPPLAL-D 84 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC---------------CCCEEcCCCCChHHHhhHHHHHHhcC--Ccc----c-CCCeEe-e
Confidence 79999999997666665544 67899988887665555443221110 000 0 011111 0
Q ss_pred cCCCcc--c--ccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047625 133 APGSLY--G--RLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLN 208 (368)
Q Consensus 133 vp~SFy--~--~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~ 208 (368)
+....- . -.++.+++|.++|.+.+|-. |-. .+ ..+++
T Consensus 85 v~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~---p~~------------------------~~------------~~lf~ 125 (204)
T PF06080_consen 85 VSAPPWPWELPAPLSPESFDAIFCINMLHIS---PWS------------------------AV------------EGLFA 125 (204)
T ss_pred cCCCCCccccccccCCCCcceeeehhHHHhc---CHH------------------------HH------------HHHHH
Confidence 110000 0 01267899999999999982 221 11 22566
Q ss_pred HHHHHhccCceEEEEeecCCC-----ccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeE
Q 047625 209 FRWEELKIGGRMILNFIGNDK-----HHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNI 283 (368)
Q Consensus 209 ~Ra~ELkpGG~lvl~~~g~~~-----e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I 283 (368)
.-++.|+|||.|++--+=..+ +...-|| +.|++ -+.-|-.++.+++.++-++.| ++.
T Consensus 126 ~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD---~sLr~--------------rdp~~GiRD~e~v~~lA~~~G-L~l 187 (204)
T PF06080_consen 126 GAARLLKPGGLLFLYGPFNRDGKFTSESNAAFD---ASLRS--------------RDPEWGIRDIEDVEALAAAHG-LEL 187 (204)
T ss_pred HHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHH---HHHhc--------------CCCCcCccCHHHHHHHHHHCC-Ccc
Confidence 778999999999887663333 1112232 33332 233367899999999999999 664
Q ss_pred eE
Q 047625 284 HQ 285 (368)
Q Consensus 284 ~~ 285 (368)
..
T Consensus 188 ~~ 189 (204)
T PF06080_consen 188 EE 189 (204)
T ss_pred Cc
Confidence 43
No 85
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.19 E-value=0.0015 Score=53.56 Aligned_cols=21 Identities=38% Similarity=0.786 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhccCceEEEEe
Q 047625 204 TSFLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 204 ~~FL~~Ra~ELkpGG~lvl~~ 224 (368)
..+++..++.|+|||++++.+
T Consensus 102 ~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 102 QEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 368899999999999999986
No 86
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.13 E-value=0.0023 Score=62.29 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhccCceEEEEee
Q 047625 203 FTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 203 ~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
...|++.-.+-|+|||+++++++
T Consensus 242 ~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 242 VRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 34588888899999999999864
No 87
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.13 E-value=0.0054 Score=56.57 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCcee
Q 047625 203 FTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFN 282 (368)
Q Consensus 203 ~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~ 282 (368)
...+++.-.+-|||||++++..+..+. .. ..| |-+.-+++|+++.+.. + |+
T Consensus 131 R~~~~~~l~~lLkpgG~~ll~~~~~~~-~~--------------~~g------------pp~~~~~~eL~~~f~~-~-~~ 181 (213)
T TIGR03840 131 RQRYAAHLLALLPPGARQLLITLDYDQ-SE--------------MAG------------PPFSVSPAEVEALYGG-H-YE 181 (213)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEEEcCC-CC--------------CCC------------cCCCCCHHHHHHHhcC-C-ce
Confidence 344778889999999998888775543 00 012 4477899999998863 3 88
Q ss_pred EeEEEEEeec
Q 047625 283 IHQLETSHIS 292 (368)
Q Consensus 283 I~~le~~~~~ 292 (368)
|..++..+++
T Consensus 182 i~~~~~~~~~ 191 (213)
T TIGR03840 182 IELLESRDVL 191 (213)
T ss_pred EEEEeecccc
Confidence 8888765543
No 88
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.12 E-value=0.002 Score=59.99 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=45.6
Q ss_pred HHHHHHHHhccCceEEEEeecCCCccchHHH--HHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeE
Q 047625 206 FLNFRWEELKIGGRMILNFIGNDKHHTGVFE--LMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNI 283 (368)
Q Consensus 206 FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~--~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I 283 (368)
|++++++-+||||.+++++.-|.- ...+.. ..+-.++ ++..|--+-+ -|-.++|+...+..+| +++
T Consensus 143 ~~~~c~~lvkP~G~lf~STinrt~-ka~~~~i~~ae~vl~-~vP~gTH~~~---------k~irp~El~~~~~~~~-~~~ 210 (243)
T COG2227 143 FLRACAKLVKPGGILFLSTINRTL-KAYLLAIIGAEYVLR-IVPKGTHDYR---------KFIKPAELIRWLLGAN-LKI 210 (243)
T ss_pred HHHHHHHHcCCCcEEEEeccccCH-HHHHHHHHHHHHHHH-hcCCcchhHH---------HhcCHHHHHHhcccCC-ceE
Confidence 899999999999999999987754 222211 2223333 5555521111 2456788888888777 776
Q ss_pred eEEEE
Q 047625 284 HQLET 288 (368)
Q Consensus 284 ~~le~ 288 (368)
....-
T Consensus 211 ~~~~g 215 (243)
T COG2227 211 IDRKG 215 (243)
T ss_pred Eeecc
Confidence 66543
No 89
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.05 E-value=0.0062 Score=59.58 Aligned_cols=184 Identities=17% Similarity=0.218 Sum_probs=109.8
Q ss_pred ccCCCCCchHHhhCHHHHHHHHHhHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCC
Q 047625 9 MNGGEGDNSYAKNSAPPREAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPP 88 (368)
Q Consensus 9 m~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p 88 (368)
|-||-+..+|.-+-..|+........+.++.+. .+.. +...-..+|.|-|.|..+-.+++.. |
T Consensus 138 ~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~-~~~G-f~~v~~avDvGgGiG~v~k~ll~~f---------------p 200 (342)
T KOG3178|consen 138 MLGGYGGADERFSKDFNGSMSFLSTLVMKKILE-VYTG-FKGVNVAVDVGGGIGRVLKNLLSKY---------------P 200 (342)
T ss_pred hhhhhcccccccHHHHHHHHHHHHHHHHHhhhh-hhcc-cccCceEEEcCCcHhHHHHHHHHhC---------------C
Confidence 567666666655555554443322222223222 2221 3457889999999998887776533 5
Q ss_pred cceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceeeeecCCCcccccCCCCccceEEcccccccccCCcccccc
Q 047625 89 ILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVS 168 (368)
Q Consensus 89 ~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~ 168 (368)
.+..+==|||. +-..-+.. .++ +--+.|.++.. .|.+- ++|--|+||-+ .
T Consensus 201 ~ik~infdlp~-----v~~~a~~~-----------~~g---V~~v~gdmfq~-~P~~d--aI~mkWiLhdw-------t- 250 (342)
T KOG3178|consen 201 HIKGINFDLPF-----VLAAAPYL-----------APG---VEHVAGDMFQD-TPKGD--AIWMKWILHDW-------T- 250 (342)
T ss_pred CCceeecCHHH-----HHhhhhhh-----------cCC---cceeccccccc-CCCcC--eEEEEeecccC-------C-
Confidence 67777667752 11111100 001 33467777888 88776 77777777641 1
Q ss_pred cCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEee-cCCC----cc-c---hHHHHHH
Q 047625 169 ECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFI-GNDK----HH-T---GVFELMG 239 (368)
Q Consensus 169 ~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~-g~~~----e~-~---~~~~~l~ 239 (368)
.+|+..||+++++.|+|||.+++.=. -..+ +. . ...+.+.
T Consensus 251 -------------------------------DedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm 299 (342)
T KOG3178|consen 251 -------------------------------DEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLM 299 (342)
T ss_pred -------------------------------hHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHH
Confidence 14888999999999999999887544 2211 11 1 1123332
Q ss_pred HHHHHHHHc-CCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEEE
Q 047625 240 MVLNDMVYE-GLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETS 289 (368)
Q Consensus 240 ~al~~l~~e-Gli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~ 289 (368)
... .+ | --++..|++..+.++| |.+-.....
T Consensus 300 ~~~----~~~G--------------kert~~e~q~l~~~~g-F~~~~~~~~ 331 (342)
T KOG3178|consen 300 LTQ----TSGG--------------KERTLKEFQALLPEEG-FPVCMVALT 331 (342)
T ss_pred HHH----hccc--------------eeccHHHHHhcchhhc-CceeEEEec
Confidence 222 23 4 4578999999999999 887666544
No 90
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.04 E-value=0.0014 Score=50.51 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=31.3
Q ss_pred CCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEE
Q 047625 143 PPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMIL 222 (368)
Q Consensus 143 P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl 222 (368)
+.+++|++++...++++ + .+...+++...+-|+|||++++
T Consensus 63 ~~~~~d~i~~~~~~~~~---~-------------------------------------~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 63 ADESFDVIISDPPLHHL---V-------------------------------------EDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred cCCceEEEEEccceeeh---h-------------------------------------hHHHHHHHHHHHHcCCCCEEEE
Confidence 56789999998888875 0 1334467777788999999987
Q ss_pred E
Q 047625 223 N 223 (368)
Q Consensus 223 ~ 223 (368)
.
T Consensus 103 ~ 103 (107)
T cd02440 103 T 103 (107)
T ss_pred E
Confidence 6
No 91
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.01 E-value=0.0071 Score=55.24 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=15.8
Q ss_pred CceEEeeecCCCCCCchHH
Q 047625 50 DCIRFTDMGCSSGPNAFLP 68 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~ 68 (368)
...+|+|+|||+|..|..+
T Consensus 78 ~~~~VLeiG~GsG~~t~~l 96 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVL 96 (212)
T ss_pred CCCEEEEECCCccHHHHHH
Confidence 3589999999999988743
No 92
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.01 E-value=0.0077 Score=54.42 Aligned_cols=97 Identities=20% Similarity=0.292 Sum_probs=64.5
Q ss_pred cCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceE
Q 047625 141 LFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRM 220 (368)
Q Consensus 141 l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~l 220 (368)
-||++|+|.++-+-|||=+.+ |..+. .+-|+.|.+.
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~-P~~vL-------------------------------------------~EmlRVgr~~ 105 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRR-PDEVL-------------------------------------------EEMLRVGRRA 105 (193)
T ss_pred hCCCCCccEEehHhHHHhHhH-HHHHH-------------------------------------------HHHHHhcCeE
Confidence 489999999999999998654 44332 2347789999
Q ss_pred EEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccc------cCCHHHHHHHHHhcCceeEeEEEEEeecC
Q 047625 221 ILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIY------YPCVEEVRQVIEREGSFNIHQLETSHISW 293 (368)
Q Consensus 221 vl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y------~ps~~E~~~~l~~~GsF~I~~le~~~~~~ 293 (368)
+++|+.-+. |..- ..+.-.|.....+ .+..+|| +-|..+++++.++.| ++|.+-..+...+
T Consensus 106 IVsFPNFg~-----W~~R----~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 106 IVSFPNFGH-----WRNR----LQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLDGGR 172 (193)
T ss_pred EEEecChHH-----HHHH----HHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEcCCC
Confidence 999964433 3311 1233346544432 2333344 579999999999999 9988877665443
No 93
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.99 E-value=0.0038 Score=57.02 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=17.2
Q ss_pred ceEEeeecCCCCCCchHHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQ 71 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ 71 (368)
..+|+|+|||+|..|..+.+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~ 93 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEA 93 (205)
T ss_pred CCEEEEECcCccHHHHHHHHh
Confidence 479999999999988766543
No 94
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.97 E-value=0.0029 Score=62.18 Aligned_cols=50 Identities=26% Similarity=0.326 Sum_probs=36.4
Q ss_pred cCCC--CccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 047625 141 LFPP--CFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGG 218 (368)
Q Consensus 141 l~P~--~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG 218 (368)
.+++ ..+|+|-+-.|||..=. + ++-.++||+.-++.|+|||
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fe------------------------s-------------e~~ar~~l~Nvs~~Lk~GG 180 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFE------------------------S-------------EEKARQFLKNVSSLLKPGG 180 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGS------------------------S-------------HHHHHHHHHHHHHTEEEEE
T ss_pred hccccCCCcceeehHHHHHHhcC------------------------C-------------HHHHHHHHHHHHHhcCCCC
Confidence 3444 49999999999999211 1 2234669999999999999
Q ss_pred eEEEEeecC
Q 047625 219 RMILNFIGN 227 (368)
Q Consensus 219 ~lvl~~~g~ 227 (368)
.++.+++-.
T Consensus 181 ~FIgT~~d~ 189 (331)
T PF03291_consen 181 YFIGTTPDS 189 (331)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEecCH
Confidence 999999744
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=96.94 E-value=0.0029 Score=60.45 Aligned_cols=141 Identities=9% Similarity=-0.013 Sum_probs=79.2
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
..+|+|+|||+|..++.+.... +..+|+..|+-. ++-.+.+... +++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~---------------~~~~V~gVDisp-~al~~Ar~n~---------------~~v-- 111 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC---------------KPEKIVCVELNP-EFARIGKRLL---------------PEA-- 111 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHHHHhC---------------cCC--
Confidence 3689999999997666543321 225777778721 2222222110 111
Q ss_pred eecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHH--HHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFES--DFTSFLN 208 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~--D~~~FL~ 208 (368)
..+-+++.+- .+..++|+|+|.-.++++..... .+. .+|..|.. ..+ .+..||+
T Consensus 112 ~~v~~D~~e~-~~~~kFDlIIsNPPF~~l~~~d~--~~~---~~~~GG~~------------------g~~~l~~~~~l~ 167 (279)
T PHA03411 112 EWITSDVFEF-ESNEKFDVVISNPPFGKINTTDT--KDV---FEYTGGEF------------------EFKVMTLGQKFA 167 (279)
T ss_pred EEEECchhhh-cccCCCcEEEEcCCccccCchhh--hhh---hhhccCcc------------------ccccccHHHHHh
Confidence 1233444432 34578999999888887432111 000 01110000 001 2567899
Q ss_pred HHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccC--CHHHHHHHHHhcCceeE
Q 047625 209 FRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYP--CVEEVRQVIEREGSFNI 283 (368)
Q Consensus 209 ~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~p--s~~E~~~~l~~~GsF~I 283 (368)
..+.-|+|+|++.+..-|+. +|+. +++||+++|++.| |..
T Consensus 168 ~v~~~L~p~G~~~~~yss~~----------------------------------~y~~sl~~~~y~~~l~~~g-~~~ 209 (279)
T PHA03411 168 DVGYFIVPTGSAGFAYSGRP----------------------------------YYDGTMKSNKYLKWSKQTG-LVT 209 (279)
T ss_pred hhHheecCCceEEEEEeccc----------------------------------cccccCCHHHHHHHHHhcC-cEe
Confidence 99999999998877754433 2332 4679999999988 663
No 96
>PLN03075 nicotianamine synthase; Provisional
Probab=96.90 E-value=0.0078 Score=58.14 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=63.8
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
.+-+|||+|||.|+.|.+++..- . .|.-++.-=|.-. +-..+-+.+-. ...+ -..+-.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~------~-------~p~~~~~giD~d~-~ai~~Ar~~~~------~~~g-L~~rV~F 181 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKH------H-------LPTTSFHNFDIDP-SANDVARRLVS------SDPD-LSKRMFF 181 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHh------c-------CCCCEEEEEeCCH-HHHHHHHHHhh------hccC-ccCCcEE
Confidence 56899999999999877665432 0 1334455445521 22222222110 0000 0112344
Q ss_pred eeecCCCcccccCC-CCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFP-PCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLN 208 (368)
Q Consensus 130 ~~~vp~SFy~~l~P-~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~ 208 (368)
..+--.+ +.+ .+.+|++++. ++|-.++.++ ...|+
T Consensus 182 ~~~Da~~----~~~~l~~FDlVF~~-ALi~~dk~~k---------------------------------------~~vL~ 217 (296)
T PLN03075 182 HTADVMD----VTESLKEYDVVFLA-ALVGMDKEEK---------------------------------------VKVIE 217 (296)
T ss_pred EECchhh----cccccCCcCEEEEe-cccccccccH---------------------------------------HHHHH
Confidence 4443322 222 3789999999 6665443221 12578
Q ss_pred HHHHHhccCceEEEEeecCCC
Q 047625 209 FRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 209 ~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
.-++.|+|||.+++.+ +.+.
T Consensus 218 ~l~~~LkPGG~Lvlr~-~~G~ 237 (296)
T PLN03075 218 HLGKHMAPGALLMLRS-AHGA 237 (296)
T ss_pred HHHHhcCCCcEEEEec-ccch
Confidence 8889999999999998 4554
No 97
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.89 E-value=0.0059 Score=56.01 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=17.3
Q ss_pred ceEEeeecCCCCCCchHHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQ 71 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ 71 (368)
..+|+|+|||+|.+|..+...
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~ 98 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEI 98 (215)
T ss_pred cCEEEEECCCccHHHHHHHHH
Confidence 479999999999999766543
No 98
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.83 E-value=0.0013 Score=60.07 Aligned_cols=50 Identities=16% Similarity=0.358 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCce
Q 047625 202 DFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSF 281 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF 281 (368)
||..||+--.+-|||||.|.+.=.-. -|.+.+++...++.-| |
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~S------------------------------------Rf~~~~~F~~~~~~~G-F 178 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKS------------------------------------RFENVKQFIKALKKLG-F 178 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGG------------------------------------G-S-HHHHHHHHHCTT-E
T ss_pred CcHHHHHHHHheeccCcEEEEEEecc------------------------------------cCcCHHHHHHHHHHCC-C
Confidence 78889999999999999998875321 1224667777788888 8
Q ss_pred eEeEEEE
Q 047625 282 NIHQLET 288 (368)
Q Consensus 282 ~I~~le~ 288 (368)
++.....
T Consensus 179 ~~~~~d~ 185 (219)
T PF05148_consen 179 KLKSKDE 185 (219)
T ss_dssp EEEEEE-
T ss_pred eEEeccc
Confidence 8877543
No 99
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.83 E-value=0.0031 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhccCceEEEEee
Q 047625 202 DFTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
+...|++.-.+-|+|||++++.+.
T Consensus 93 ~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 93 LYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 666799999999999999999874
No 100
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.78 E-value=0.0087 Score=54.95 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.8
Q ss_pred ceEEeeecCCCCCCchHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTW 70 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~ 70 (368)
..+|+|+|||+|..|..+..
T Consensus 77 g~~VLdIG~GsG~~t~~la~ 96 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAE 96 (212)
T ss_pred cCEEEEECCcccHHHHHHHH
Confidence 47999999999998876654
No 101
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.78 E-value=0.011 Score=60.00 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=66.8
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
.-+|+|+|||+|.-|+.+.+.. +...|+-.|.- -..+-. + ...... .+ ....++
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~s---~~~l~~-~---~~n~~~-~g---~~~~~~ 298 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA---------------PQAQVVALDID---AQRLER-V---RENLQR-LG---LKATVI 298 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc---------------CCCEEEEEeCC---HHHHHH-H---HHHHHH-cC---CCeEEE
Confidence 3689999999999888776543 11466766762 111111 1 111110 11 111222
Q ss_pred eecCCCcccccCCCCccceEEc---ccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPCFLNLVYS---SFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFL 207 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~sid~~~S---~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL 207 (368)
.+.... ....++++++|.+++ ++...-+.+.|... |.+ .++-. ..+......+|
T Consensus 299 ~~D~~~-~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~--------~~~----------~~~~l----~~l~~~q~~iL 355 (427)
T PRK10901 299 VGDARD-PAQWWDGQPFDRILLDAPCSATGVIRRHPDIK--------WLR----------RPEDI----AALAALQSEIL 355 (427)
T ss_pred EcCccc-chhhcccCCCCEEEECCCCCcccccccCcccc--------ccC----------CHHHH----HHHHHHHHHHH
Confidence 222211 112345678999983 23332233444421 111 12211 22334556789
Q ss_pred HHHHHHhccCceEEEEeecC
Q 047625 208 NFRWEELKIGGRMILNFIGN 227 (368)
Q Consensus 208 ~~Ra~ELkpGG~lvl~~~g~ 227 (368)
..-++-|||||+|+.+++.-
T Consensus 356 ~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 356 DALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred HHHHHhcCCCCEEEEEeCCC
Confidence 99999999999999888643
No 102
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.70 E-value=0.0091 Score=53.69 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=27.0
Q ss_pred ccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecC
Q 047625 178 RDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGN 227 (368)
Q Consensus 178 ~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~ 227 (368)
+.|++..+. .+...|+....-|+||||+|++..-.
T Consensus 104 daiFIGGg~---------------~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 104 DAIFIGGGG---------------NIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CEEEECCCC---------------CHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 467777664 34557889999999999999998533
No 103
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.69 E-value=0.0091 Score=57.30 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhccCceEEEEee
Q 047625 202 DFTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
+...++..-.+-|+|||+|+++++
T Consensus 222 ~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 222 ILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred HHHHHHHHHHHhccCCCEEEEEEC
Confidence 566788888999999999999985
No 104
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.64 E-value=0.0095 Score=60.55 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=72.3
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
..+|+|+|||+|.-|+.+...+ +.-.|+-.|.- -..+-. +. ..... .| .. +-+
T Consensus 239 g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~---~~~l~~-~~---~n~~r-~g---~~-~~v 291 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA---------------PQAQVVALDIH---EHRLKR-VY---ENLKR-LG---LT-IKA 291 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCC---HHHHHH-HH---HHHHH-cC---CC-eEE
Confidence 3799999999999998776443 12567777772 111111 11 11111 11 11 111
Q ss_pred eecCCCccc--ccCCCCccceEEc---ccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYG--RLFPPCFLNLVYS---SFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTS 205 (368)
Q Consensus 131 ~~vp~SFy~--~l~P~~sid~~~S---~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~ 205 (368)
..+.+.-.+ ...+.+++|.++. +++..-+.+.|.... .+ + +..+. ...+.-..
T Consensus 292 ~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~--------~~--------~-~~~~~-----~l~~lQ~~ 349 (426)
T TIGR00563 292 ETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKW--------LR--------K-PRDIA-----ELAELQSE 349 (426)
T ss_pred EEeccccccccccccccccCEEEEcCCCCCCcccccCcchhh--------cC--------C-HHHHH-----HHHHHHHH
Confidence 112222211 1235678999985 566666666676321 11 1 22222 23334456
Q ss_pred HHHHHHHHhccCceEEEEeecCCC
Q 047625 206 FLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 206 FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
+|..-++-|||||+||.+++.-..
T Consensus 350 lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 350 ILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCh
Confidence 888889999999999999886643
No 105
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.59 E-value=0.012 Score=59.57 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhccCceEEEEee
Q 047625 203 FTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 203 ~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
+.++++.-.+.|+|||+++++.+
T Consensus 360 yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEC
Confidence 45678888889999999988773
No 106
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.58 E-value=0.006 Score=63.41 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhccCceEEEEee
Q 047625 202 DFTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
.+..+++.-.+-|+|||+++++.+
T Consensus 247 ~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 247 AYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred HHHHHHHHHHHhccCCCEEEEEEC
Confidence 345588888899999999999853
No 107
>PRK00811 spermidine synthase; Provisional
Probab=96.57 E-value=0.0072 Score=58.12 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=64.4
Q ss_pred CCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCce
Q 047625 49 PDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSC 128 (368)
Q Consensus 49 ~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~ 128 (368)
+.+-+|+|+|||+|..+..+++. ++.-+|..-|+-. ..-.+.+..- ..+....- ++.+--
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~---------------~~~~~V~~VEid~-~vv~~a~~~~---~~~~~~~~-~d~rv~ 134 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH---------------PSVEKITLVEIDE-RVVEVCRKYL---PEIAGGAY-DDPRVE 134 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC---------------CCCCEEEEEeCCH-HHHHHHHHHh---HHhccccc-cCCceE
Confidence 45789999999999776655321 1224667667721 2222222210 00000000 111223
Q ss_pred eeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047625 129 FIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLN 208 (368)
Q Consensus 129 f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~ 208 (368)
++.+.+..|-.+ +++++|+|++-.+-+| . ++. ..|. ..|++
T Consensus 135 v~~~Da~~~l~~--~~~~yDvIi~D~~dp~---~-------------------------~~~--~l~t-------~ef~~ 175 (283)
T PRK00811 135 LVIGDGIKFVAE--TENSFDVIIVDSTDPV---G-------------------------PAE--GLFT-------KEFYE 175 (283)
T ss_pred EEECchHHHHhh--CCCcccEEEECCCCCC---C-------------------------chh--hhhH-------HHHHH
Confidence 455666565554 5788999988554333 0 111 1121 35788
Q ss_pred HHHHHhccCceEEEEee
Q 047625 209 FRWEELKIGGRMILNFI 225 (368)
Q Consensus 209 ~Ra~ELkpGG~lvl~~~ 225 (368)
...+-|+|||.|++...
T Consensus 176 ~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 176 NCKRALKEDGIFVAQSG 192 (283)
T ss_pred HHHHhcCCCcEEEEeCC
Confidence 88899999999998754
No 108
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.56 E-value=0.0053 Score=58.06 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhccCceEEEEe
Q 047625 201 SDFTSFLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 201 ~D~~~FL~~Ra~ELkpGG~lvl~~ 224 (368)
.++..|++.-.+-|+|||+++++.
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE
Confidence 466778999999999999999976
No 109
>PRK14968 putative methyltransferase; Provisional
Probab=96.53 E-value=0.02 Score=50.61 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhccCceEEEEee
Q 047625 202 DFTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
.+..|++...+-|+|||++++...
T Consensus 126 ~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 126 VIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEc
Confidence 356789999999999999998764
No 110
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.52 E-value=0.016 Score=59.12 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=75.6
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCce-e
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSC-F 129 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~-f 129 (368)
.-+|+|+|||+|.-|+.+.... .+.-+|+-.|+ +.+.+-.. ... .. ..| ..++ +
T Consensus 238 g~~VLD~cagpGgkt~~la~~~--------------~~~g~V~a~Di---s~~rl~~~-~~n---~~-r~g---~~~v~~ 292 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELM--------------KDQGKILAVDI---SREKIQLV-EKH---AK-RLK---LSSIEI 292 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEEEC---CHHHHHHH-HHH---HH-HcC---CCeEEE
Confidence 3689999999999998876443 12367888888 22332221 111 11 111 1121 2
Q ss_pred eeecCCCcccccCCCCccceEEc---ccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYS---SFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSF 206 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S---~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~F 206 (368)
..+....+ .. +.++++|.|+. ++.+..+.+.|...... +++. .....+.-...
T Consensus 293 ~~~Da~~l-~~-~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~------------------~~~~----~~~l~~~Q~~i 348 (431)
T PRK14903 293 KIADAERL-TE-YVQDTFDRILVDAPCTSLGTARNHPEVLRRV------------------NKED----FKKLSEIQLRI 348 (431)
T ss_pred EECchhhh-hh-hhhccCCEEEECCCCCCCccccCChHHHHhC------------------CHHH----HHHHHHHHHHH
Confidence 22222211 11 23567899885 56667777766643210 2221 23344455778
Q ss_pred HHHHHHHhccCceEEEEeecCCC
Q 047625 207 LNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 207 L~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
|..-++-|||||+||.+++....
T Consensus 349 L~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 349 VSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred HHHHHHhcCCCCEEEEEECCCCh
Confidence 99999999999999999987654
No 111
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.49 E-value=0.0023 Score=58.82 Aligned_cols=94 Identities=18% Similarity=0.341 Sum_probs=58.8
Q ss_pred CceeeeecCCCcccccCCC-CccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHH
Q 047625 126 GSCFIGVAPGSLYGRLFPP-CFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFT 204 (368)
Q Consensus 126 ~~~f~~~vp~SFy~~l~P~-~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~ 204 (368)
.++|..|. +..-|+ +++|+||.=||+..|++ .||.
T Consensus 106 ~~~~~~gL-----Q~f~P~~~~YDlIW~QW~lghLTD---------------------------------------~dlv 141 (218)
T PF05891_consen 106 GEFYCVGL-----QDFTPEEGKYDLIWIQWCLGHLTD---------------------------------------EDLV 141 (218)
T ss_dssp EEEEES-G-----GG----TT-EEEEEEES-GGGS-H---------------------------------------HHHH
T ss_pred ceEEecCH-----hhccCCCCcEeEEEehHhhccCCH---------------------------------------HHHH
Confidence 45665554 344565 79999998777766432 4899
Q ss_pred HHHHHHHHHhccCceEEEE-eecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeE
Q 047625 205 SFLNFRWEELKIGGRMILN-FIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNI 283 (368)
Q Consensus 205 ~FL~~Ra~ELkpGG~lvl~-~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I 283 (368)
.||+++.+.|+|||.+|+= +.+... . ..++++ | -...||.+.++++++++| ++|
T Consensus 142 ~fL~RCk~~L~~~G~IvvKEN~~~~~--~----------------~~~D~~--D----sSvTRs~~~~~~lF~~AG-l~~ 196 (218)
T PF05891_consen 142 AFLKRCKQALKPNGVIVVKENVSSSG--F----------------DEFDEE--D----SSVTRSDEHFRELFKQAG-LRL 196 (218)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEEESSS--E----------------EEEETT--T----TEEEEEHHHHHHHHHHCT--EE
T ss_pred HHHHHHHHhCcCCcEEEEEecCCCCC--C----------------cccCCc--c----CeeecCHHHHHHHHHHcC-CEE
Confidence 9999999999999988872 222211 0 011111 1 236788899999999999 888
Q ss_pred eEEEE
Q 047625 284 HQLET 288 (368)
Q Consensus 284 ~~le~ 288 (368)
...+.
T Consensus 197 v~~~~ 201 (218)
T PF05891_consen 197 VKEEK 201 (218)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 77664
No 112
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.011 Score=57.05 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=66.2
Q ss_pred eEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceeee
Q 047625 52 IRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIG 131 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~ 131 (368)
.+|||+|||-|..++.+.+. .|..++.+-|. |+..+=..-.. . ..++ ..+. .
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~---------------~p~~~vtmvDv---n~~Av~~ar~N----l-~~N~---~~~~--~ 211 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKK---------------SPQAKLTLVDV---NARAVESARKN----L-AANG---VENT--E 211 (300)
T ss_pred CcEEEeCCCccHHHHHHHHh---------------CCCCeEEEEec---CHHHHHHHHHh----H-HHcC---CCcc--E
Confidence 49999999999887766543 26789999998 55444322111 1 1111 1221 1
Q ss_pred ecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047625 132 VAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRW 211 (368)
Q Consensus 132 ~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra 211 (368)
.+-.+=|+.+.. ++|+|+|. |+....+. . ...+. .++++.-+
T Consensus 212 v~~s~~~~~v~~--kfd~IisN---------PPfh~G~~--------------v--~~~~~-----------~~~i~~A~ 253 (300)
T COG2813 212 VWASNLYEPVEG--KFDLIISN---------PPFHAGKA--------------V--VHSLA-----------QEIIAAAA 253 (300)
T ss_pred EEEecccccccc--cccEEEeC---------CCccCCcc--------------h--hHHHH-----------HHHHHHHH
Confidence 122233666665 89999884 66543210 0 01111 13677788
Q ss_pred HHhccCceEEEEeecCCC
Q 047625 212 EELKIGGRMILNFIGNDK 229 (368)
Q Consensus 212 ~ELkpGG~lvl~~~g~~~ 229 (368)
+.|++||.|.+..-|..+
T Consensus 254 ~~L~~gGeL~iVan~~l~ 271 (300)
T COG2813 254 RHLKPGGELWIVANRHLP 271 (300)
T ss_pred HhhccCCEEEEEEcCCCC
Confidence 999999999988865544
No 113
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.41 E-value=0.022 Score=52.01 Aligned_cols=59 Identities=20% Similarity=0.134 Sum_probs=40.8
Q ss_pred eeeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Q 047625 128 CFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFL 207 (368)
Q Consensus 128 ~f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL 207 (368)
.|+.|.+.+-- | +++.|+|.+++..+|.= +. |=..-|
T Consensus 129 ~fvva~ge~l~-~-l~d~s~DtVV~TlvLCS-------ve----------------------------------~~~k~L 165 (252)
T KOG4300|consen 129 RFVVADGENLP-Q-LADGSYDTVVCTLVLCS-------VE----------------------------------DPVKQL 165 (252)
T ss_pred EEEeechhcCc-c-cccCCeeeEEEEEEEec-------cC----------------------------------CHHHHH
Confidence 46767663322 1 28999999998776532 11 122246
Q ss_pred HHHHHHhccCceEEEEeecCCC
Q 047625 208 NFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 208 ~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
+.-.+-|+|||++++.=-+++.
T Consensus 166 ~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 166 NEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred HHHHHhcCCCcEEEEEeccccc
Confidence 7777889999999999988887
No 114
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.34 E-value=0.0076 Score=56.72 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhccCceEEEEee
Q 047625 202 DFTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
||..|++--.+-|+|||.+.+.=.
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEeh
Confidence 778899999999999999988653
No 115
>PRK04457 spermidine synthase; Provisional
Probab=96.33 E-value=0.0068 Score=57.65 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.3
Q ss_pred HHHHHHHHHhccCceEEEEeecCCC
Q 047625 205 SFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 205 ~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
.|++...+-|+|||++++...+++.
T Consensus 158 efl~~~~~~L~pgGvlvin~~~~~~ 182 (262)
T PRK04457 158 PFFDDCRNALSSDGIFVVNLWSRDK 182 (262)
T ss_pred HHHHHHHHhcCCCcEEEEEcCCCch
Confidence 4888899999999999998876654
No 116
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.30 E-value=0.029 Score=57.33 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=66.5
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
.-+|+|+|||+|..|+.+.+.. .+.-+|+-.|+- -+.+-. + ..... ..+ ..+ +
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~--------------~~~~~v~avDi~---~~~l~~-~---~~n~~-~~g---~~~--v 303 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELL--------------KNTGKVVALDIH---EHKLKL-I---EENAK-RLG---LTN--I 303 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEeCC---HHHHHH-H---HHHHH-HcC---CCe--E
Confidence 3689999999999998776543 122577777772 111111 1 11111 011 112 1
Q ss_pred eecCCCccc--ccCCCCccceEEc---ccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYG--RLFPPCFLNLVYS---SFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTS 205 (368)
Q Consensus 131 ~~vp~SFy~--~l~P~~sid~~~S---~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~ 205 (368)
..+-+.+.+ .-++ +++|++++ ++....+.+.|... |.+ .+... ....+--..
T Consensus 304 ~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~--------~~~----------~~~~~----~~l~~~q~~ 360 (444)
T PRK14902 304 ETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIK--------YNK----------TKEDI----ESLQEIQLE 360 (444)
T ss_pred EEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchh--------hcC----------CHHHH----HHHHHHHHH
Confidence 122222221 1133 78999886 34444445555422 111 11111 122223356
Q ss_pred HHHHHHHHhccCceEEEEeecC
Q 047625 206 FLNFRWEELKIGGRMILNFIGN 227 (368)
Q Consensus 206 FL~~Ra~ELkpGG~lvl~~~g~ 227 (368)
+|+.-.+-|||||+||.+++.-
T Consensus 361 iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 361 ILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHHcCCCCEEEEEcCCC
Confidence 8888999999999999877544
No 117
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.23 E-value=0.0098 Score=57.27 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=19.2
Q ss_pred HHHHHHHHHhccCceEEEEeecCCC
Q 047625 205 SFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 205 ~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
.++..-.+-|+|||+++++......
T Consensus 240 ~ll~~~~~~LkpgG~li~sgi~~~~ 264 (288)
T TIGR00406 240 ELYPQFSRLVKPGGWLILSGILETQ 264 (288)
T ss_pred HHHHHHHHHcCCCcEEEEEeCcHhH
Confidence 3566678899999999998765443
No 118
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.18 E-value=0.023 Score=58.11 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEeecCCC
Q 047625 200 ESDFTSFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 200 ~~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
.+.-..+|..-++-|||||+|+.+++....
T Consensus 353 ~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 353 VGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 345567899999999999999999987654
No 119
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.16 E-value=0.0076 Score=61.57 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=34.4
Q ss_pred cccCCCCccceEEccccc-ccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 047625 139 GRLFPPCFLNLVYSSFCL-NWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIG 217 (368)
Q Consensus 139 ~~l~P~~sid~~~S~~al-hWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpG 217 (368)
.--||++++|++||+-|+ .|.+.- | + +|----+-|+||
T Consensus 174 rLPfp~~~fDmvHcsrc~i~W~~~~---------------g-~-------------------------~l~evdRvLRpG 212 (506)
T PF03141_consen 174 RLPFPSNAFDMVHCSRCLIPWHPND---------------G-F-------------------------LLFEVDRVLRPG 212 (506)
T ss_pred cccCCccchhhhhcccccccchhcc---------------c-c-------------------------eeehhhhhhccC
Confidence 346999999999999886 453321 1 1 223335679999
Q ss_pred ceEEEEeecCC
Q 047625 218 GRMILNFIGND 228 (368)
Q Consensus 218 G~lvl~~~g~~ 228 (368)
|.++++..-..
T Consensus 213 Gyfv~S~ppv~ 223 (506)
T PF03141_consen 213 GYFVLSGPPVY 223 (506)
T ss_pred ceEEecCCccc
Confidence 99999988644
No 120
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.07 E-value=0.17 Score=48.69 Aligned_cols=60 Identities=23% Similarity=0.250 Sum_probs=40.6
Q ss_pred HHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCccccc--CCHHHHHHHHHhcCcee
Q 047625 206 FLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYY--PCVEEVRQVIEREGSFN 282 (368)
Q Consensus 206 FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~--ps~~E~~~~l~~~GsF~ 282 (368)
-|+--+..|.|||.|+.+.----. -.+.+..+|... .+| .||.+ +|..|..++++.+| |+
T Consensus 231 sl~gl~~al~pgG~lIyTgQPwHP----Qle~IAr~LtsH-r~g-----------~~WvMRrRsq~EmD~Lv~~aG-F~ 292 (311)
T PF12147_consen 231 SLAGLARALEPGGYLIYTGQPWHP----QLEMIARVLTSH-RDG-----------KAWVMRRRSQAEMDQLVEAAG-FE 292 (311)
T ss_pred HHHHHHHHhCCCcEEEEcCCCCCc----chHHHHHHHhcc-cCC-----------CceEEEecCHHHHHHHHHHcC-Cc
Confidence 467778899999999887522211 244555555432 122 36665 79999999999999 76
No 121
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.90 E-value=0.043 Score=51.81 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhccCceEEEEee
Q 047625 203 FTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 203 ~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
+..++..-.+-|+|||++++...
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 45688888899999999998874
No 122
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.87 E-value=0.043 Score=49.44 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhccCceEEEEeec
Q 047625 202 DFTSFLNFRWEELKIGGRMILNFIG 226 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~~g 226 (368)
++..+|+.-.+-|+|||++++....
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeec
Confidence 3456788888889999999999853
No 123
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.83 E-value=0.023 Score=54.14 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=17.4
Q ss_pred HHHHHHHHHhccCceEEEEe
Q 047625 205 SFLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 205 ~FL~~Ra~ELkpGG~lvl~~ 224 (368)
.|++..++-|+|||++++..
T Consensus 167 ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred HHHHHHHHHhCCCcEEEEcC
Confidence 47888889999999999983
No 124
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.80 E-value=0.04 Score=51.85 Aligned_cols=21 Identities=38% Similarity=0.325 Sum_probs=16.5
Q ss_pred HHHHHHHHHhccCceEEEEee
Q 047625 205 SFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 205 ~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
.++..-.+-|||||+++++..
T Consensus 194 ~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 194 ELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred HHHHHHHHhcCCCcEEEEEEC
Confidence 356667788999999998743
No 125
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.78 E-value=0.073 Score=54.26 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhccCceEEEEeecC
Q 047625 199 FESDFTSFLNFRWEELKIGGRMILNFIGN 227 (368)
Q Consensus 199 ~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~ 227 (368)
..+.-..+|..-++-|||||+||.+++.-
T Consensus 359 l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 359 LAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 33445678999999999999999887654
No 126
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.47 E-value=0.049 Score=49.47 Aligned_cols=113 Identities=23% Similarity=0.395 Sum_probs=63.8
Q ss_pred EEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCce-eee
Q 047625 53 RFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSC-FIG 131 (368)
Q Consensus 53 ~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~-f~~ 131 (368)
.++|+|||.|...+..... .|+..++=-|. ..+.+.+.+.. .... ...|+ ++.
T Consensus 20 l~lEIG~G~G~~l~~~A~~---------------~Pd~n~iGiE~---~~~~v~~a~~~----~~~~----~l~Nv~~~~ 73 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKR---------------NPDINFIGIEI---RKKRVAKALRK----AEKR----GLKNVRFLR 73 (195)
T ss_dssp EEEEET-TTSHHHHHHHHH---------------STTSEEEEEES----HHHHHHHHHH----HHHH----TTSSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHH---------------CCCCCEEEEec---chHHHHHHHHH----HHhh----cccceEEEE
Confidence 8999999999655544322 26677776676 23333332211 1111 12454 444
Q ss_pred ecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047625 132 VAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRW 211 (368)
Q Consensus 132 ~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra 211 (368)
+-...+...++|++||+-++=.+-==| |+.-- .|.++ .+ ..||..-+
T Consensus 74 ~da~~~l~~~~~~~~v~~i~i~FPDPW----pK~rH--------~krRl----~~-----------------~~fl~~~~ 120 (195)
T PF02390_consen 74 GDARELLRRLFPPGSVDRIYINFPDPW----PKKRH--------HKRRL----VN-----------------PEFLELLA 120 (195)
T ss_dssp S-CTTHHHHHSTTTSEEEEEEES---------SGGG--------GGGST----TS-----------------HHHHHHHH
T ss_pred ccHHHHHhhcccCCchheEEEeCCCCC----cccch--------hhhhc----CC-----------------chHHHHHH
Confidence 566777899999999998876554444 22100 11111 11 12888999
Q ss_pred HHhccCceEEEEe
Q 047625 212 EELKIGGRMILNF 224 (368)
Q Consensus 212 ~ELkpGG~lvl~~ 224 (368)
+-|+|||.+.+.+
T Consensus 121 ~~L~~gG~l~~~T 133 (195)
T PF02390_consen 121 RVLKPGGELYFAT 133 (195)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HHcCCCCEEEEEe
Confidence 9999999998877
No 127
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.083 Score=50.78 Aligned_cols=126 Identities=23% Similarity=0.223 Sum_probs=67.0
Q ss_pred EEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceeeee
Q 047625 53 RFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFIGV 132 (368)
Q Consensus 53 ~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~~~ 132 (368)
+|+|+|||||..++.+.... |...|+-.|+-. |-=.+-+. +... .+..+ +...
T Consensus 113 ~ilDlGTGSG~iai~la~~~---------------~~~~V~a~Dis~-~Al~~A~~---------Na~~-~~l~~-~~~~ 165 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---------------PDAEVIAVDISP-DALALARE---------NAER-NGLVR-VLVV 165 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---------------cCCeEEEEECCH-HHHHHHHH---------HHHH-cCCcc-EEEE
Confidence 89999999998777665544 447888889821 11111110 0000 11112 2222
Q ss_pred cCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHH-HHHHHHHHHHHHHH
Q 047625 133 APGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLD-QFESDFTSFLNFRW 211 (368)
Q Consensus 133 vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~-Q~~~D~~~FL~~Ra 211 (368)
.+ +++..+-. .+|+++|. |+.+.... +....+-+. -. |. ...+.. ---....+|+..-.
T Consensus 166 ~~-dlf~~~~~--~fDlIVsN---------PPYip~~~--~~~~~~~~~---~E-P~--~Al~~g~dGl~~~~~i~~~a~ 225 (280)
T COG2890 166 QS-DLFEPLRG--KFDLIVSN---------PPYIPAED--PELLPEVVR---YE-PL--LALVGGGDGLEVYRRILGEAP 225 (280)
T ss_pred ee-ecccccCC--ceeEEEeC---------CCCCCCcc--cccChhhhc---cC-HH--HHHccCccHHHHHHHHHHhhH
Confidence 33 66666655 89999984 77765420 000000000 00 00 001111 01234556888889
Q ss_pred HHhccCceEEEEee
Q 047625 212 EELKIGGRMILNFI 225 (368)
Q Consensus 212 ~ELkpGG~lvl~~~ 225 (368)
+-|+|||.++++.+
T Consensus 226 ~~l~~~g~l~le~g 239 (280)
T COG2890 226 DILKPGGVLILEIG 239 (280)
T ss_pred HHcCCCcEEEEEEC
Confidence 99999999999884
No 128
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.064 Score=49.21 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=17.7
Q ss_pred ceEEeeecCCCCCCchHHHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~i 72 (368)
..+|+|+|||+|.+|..+. ++
T Consensus 73 g~~VLEIGtGsGY~aAvla-~l 93 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLA-RL 93 (209)
T ss_pred CCeEEEECCCchHHHHHHH-HH
Confidence 5999999999999998664 44
No 129
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.28 E-value=0.094 Score=47.39 Aligned_cols=22 Identities=32% Similarity=0.783 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhccCceEEEEee
Q 047625 204 TSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 204 ~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
..+|+.-.+-|+|||++++...
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 125 KEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred HHHHHHHHHHcCCCcEEEEEee
Confidence 4467888889999999997653
No 130
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.25 E-value=0.22 Score=47.24 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhccCceEEEEeecCCC
Q 047625 199 FESDFTSFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 199 ~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
..+.-..+|+.-++-|||||+||.+++....
T Consensus 174 l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 174 ISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 3344556899999999999999998865544
No 131
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.18 E-value=0.15 Score=49.96 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhccCceEEEEeecCCC
Q 047625 203 FTSFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 203 ~~~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
...+|+.-++-|||||++++.+.....
T Consensus 273 ~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 273 YERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred HHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 355888888999999999999876544
No 132
>PRK01581 speE spermidine synthase; Validated
Probab=95.06 E-value=0.1 Score=51.94 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=17.9
Q ss_pred HHHHHHHHHhccCceEEEEee
Q 047625 205 SFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 205 ~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
.|++...+.|+|||.|++...
T Consensus 249 EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 249 ELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred HHHHHHHHhcCCCcEEEEecC
Confidence 478888999999999998853
No 133
>PLN02366 spermidine synthase
Probab=95.02 E-value=0.069 Score=52.06 Aligned_cols=117 Identities=12% Similarity=0.037 Sum_probs=62.2
Q ss_pred CCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhc-ChhhHHHhhhhccCCCCCc
Q 047625 49 PDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKS-LPSFYERLKTEKRNDDFGS 127 (368)
Q Consensus 49 ~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~-l~~~~~~~~~~~~~~~~~~ 127 (368)
+.+-+|+++|||+|.....++ +. ++..+|..-|+.. +.-.+.+. ++... .+.++.+-
T Consensus 90 ~~pkrVLiIGgG~G~~~rell--------k~-------~~v~~V~~VEiD~-~Vi~~ar~~f~~~~------~~~~dpRv 147 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIA--------RH-------SSVEQIDICEIDK-MVIDVSKKFFPDLA------VGFDDPRV 147 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHH--------hC-------CCCCeEEEEECCH-HHHHHHHHhhhhhc------cccCCCce
Confidence 457899999999997433332 11 1224666666631 11122222 11100 00011233
Q ss_pred eeeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Q 047625 128 CFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFL 207 (368)
Q Consensus 128 ~f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL 207 (368)
-++.+.+..|.++. |++++|+|++-.+-+|- |. ...|. ..|+
T Consensus 148 ~vi~~Da~~~l~~~-~~~~yDvIi~D~~dp~~---~~---------------------------~~L~t-------~ef~ 189 (308)
T PLN02366 148 NLHIGDGVEFLKNA-PEGTYDAIIVDSSDPVG---PA---------------------------QELFE-------KPFF 189 (308)
T ss_pred EEEEChHHHHHhhc-cCCCCCEEEEcCCCCCC---ch---------------------------hhhhH-------HHHH
Confidence 44555665666543 56789999874333320 10 11111 2478
Q ss_pred HHHHHHhccCceEEEEee
Q 047625 208 NFRWEELKIGGRMILNFI 225 (368)
Q Consensus 208 ~~Ra~ELkpGG~lvl~~~ 225 (368)
+..++.|+|||.|+....
T Consensus 190 ~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 190 ESVARALRPGGVVCTQAE 207 (308)
T ss_pred HHHHHhcCCCcEEEECcC
Confidence 888999999999987653
No 134
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.98 E-value=0.064 Score=55.82 Aligned_cols=140 Identities=15% Similarity=0.095 Sum_probs=81.9
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCch
Q 047625 23 APPREAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDF 102 (368)
Q Consensus 23 ~~Q~~~~~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDf 102 (368)
..|++.++...|.+.-....+. ....-.++|+|||.|..++..... .|+..++=-|.- .
T Consensus 323 ~~q~~~~e~~~p~~~i~~eklf---~~~~p~~lEIG~G~G~~~~~~A~~---------------~p~~~~iGiE~~---~ 381 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEKLV---NEKRKVFLEIGFGMGEHFINQAKM---------------NPDALFIGVEVY---L 381 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHHhC---CCCCceEEEECCCchHHHHHHHHh---------------CCCCCEEEEEee---H
Confidence 3788888887776654333322 123578999999999766655332 255555544442 2
Q ss_pred hhhhhcChhhHHHhhhhccCCCCCceeeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEE
Q 047625 103 NTLSKSLPSFYERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCV 182 (368)
Q Consensus 103 n~lf~~l~~~~~~~~~~~~~~~~~~~f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~ 182 (368)
+.+-+.+.. ... ....|+.+......+....||++|||-++-.+-==| |+.- -.|.++
T Consensus 382 ~~~~~~~~~----~~~----~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPW----pKkr--------h~krRl-- 439 (506)
T PRK01544 382 NGVANVLKL----AGE----QNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPW----IKNK--------QKKKRI-- 439 (506)
T ss_pred HHHHHHHHH----HHH----cCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCC----CCCC--------Cccccc--
Confidence 222222211 111 123455543333445678899999999987776555 3311 011122
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEe
Q 047625 183 AKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 183 ~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~ 224 (368)
.+ ..||+.-++-|||||.+.+.+
T Consensus 440 --~~-----------------~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 440 --FN-----------------KERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred --cC-----------------HHHHHHHHHhcCCCCEEEEEc
Confidence 11 128888899999999999877
No 135
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=94.30 E-value=0.074 Score=47.23 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhccCceEEEEeecCCCccchHHHHH
Q 047625 204 TSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELM 238 (368)
Q Consensus 204 ~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l 238 (368)
..+++.-.+-|+|+|.+++...-|.+.....++.+
T Consensus 136 ~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~ 170 (173)
T PF10294_consen 136 EPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRL 170 (173)
T ss_dssp HHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHh
Confidence 33667777889999997777776755333444443
No 136
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=94.19 E-value=0.14 Score=47.03 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=15.0
Q ss_pred ceEEeeecCCCCCCchHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPT 69 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~ 69 (368)
-.+|+|+|||+|.+|.++.
T Consensus 73 g~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp T-EEEEES-TTSHHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHH
Confidence 3799999999999998775
No 137
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.99 E-value=0.23 Score=46.58 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcC
Q 047625 201 SDFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREG 279 (368)
Q Consensus 201 ~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~G 279 (368)
.-+.+|++..++-|.|||+||++== -|+.-..+-+.. +. + ..|.--.+-.++.+..++-+.+
T Consensus 186 ~GL~~ff~kis~ll~pgGiLvvEPQ--------pWksY~kaar~~------e~--~-~~ny~~i~lkp~~f~~~l~q~~ 247 (288)
T KOG2899|consen 186 DGLRRFFRKISSLLHPGGILVVEPQ--------PWKSYKKAARRS------EK--L-AANYFKIFLKPEDFEDWLNQIV 247 (288)
T ss_pred HHHHHHHHHHHHhhCcCcEEEEcCC--------chHHHHHHHHHH------HH--h-hcCccceecCHHHHHhhhhhhh
Confidence 3688899999999999999999752 244333332221 00 0 1122224567888888887663
No 138
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.80 E-value=2.7 Score=37.94 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChh
Q 047625 32 AKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPS 111 (368)
Q Consensus 32 ~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~ 111 (368)
++..|++...++... .+...+|||||+|--|-.+.+.+. |....+-.|+ |-.. +-.
T Consensus 28 LlDaLekd~~eL~~~---~~~i~lEIG~GSGvvstfL~~~i~--------------~~~~~latDi--Np~A-~~~---- 83 (209)
T KOG3191|consen 28 LLDALEKDAAELKGH---NPEICLEIGCGSGVVSTFLASVIG--------------PQALYLATDI--NPEA-LEA---- 83 (209)
T ss_pred HHHHHHHHHHHHhhc---CceeEEEecCCcchHHHHHHHhcC--------------CCceEEEecC--CHHH-HHH----
Confidence 566677777766432 368899999999977766665551 3366666777 1111 000
Q ss_pred hHHHhhhhccCCCCCceeeeecCCCcccccCCCCccceEE
Q 047625 112 FYERLKTEKRNDDFGSCFIGVAPGSLYGRLFPPCFLNLVY 151 (368)
Q Consensus 112 ~~~~~~~~~~~~~~~~~f~~~vp~SFy~~l~P~~sid~~~ 151 (368)
...+... +.+-+-.|-.++..-|-+ +++|+.+
T Consensus 84 ---Tl~TA~~----n~~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 84 ---TLETARC----NRVHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ---HHHHHHh----cCCccceeehhHHhhhcc-CCccEEE
Confidence 1111111 223344566666666777 8888754
No 139
>PRK03612 spermidine synthase; Provisional
Probab=93.49 E-value=0.22 Score=52.01 Aligned_cols=41 Identities=12% Similarity=0.077 Sum_probs=25.2
Q ss_pred HHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCC
Q 047625 206 FLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGL 250 (368)
Q Consensus 206 FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGl 250 (368)
|++.-.+.|+|||+++++...+.-. .+.+.++.+.+.+.|.
T Consensus 397 f~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 397 FYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGL 437 (521)
T ss_pred HHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCC
Confidence 6777788999999999986432211 2233444455544563
No 140
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=93.47 E-value=1 Score=41.99 Aligned_cols=65 Identities=28% Similarity=0.386 Sum_probs=42.1
Q ss_pred ceeee-ecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHH
Q 047625 127 SCFIG-VAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTS 205 (368)
Q Consensus 127 ~~f~~-~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~ 205 (368)
|+.+. +...-+.+.++|++|+|=++=.+.==| |+.- =+|.++ ++ + .
T Consensus 99 Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPW----pKkR--------H~KRRl----~~-~----------------~ 145 (227)
T COG0220 99 NLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPW----PKKR--------HHKRRL----TQ-P----------------E 145 (227)
T ss_pred cEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCC----CCcc--------cccccc----CC-H----------------H
Confidence 44433 334455677888889998887665555 3311 122333 22 1 3
Q ss_pred HHHHHHHHhccCceEEEEe
Q 047625 206 FLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 206 FL~~Ra~ELkpGG~lvl~~ 224 (368)
||+.-++-|+|||.+.+.+
T Consensus 146 fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 146 FLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred HHHHHHHHccCCCEEEEEe
Confidence 8899999999999999988
No 141
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=92.95 E-value=0.17 Score=49.76 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=63.4
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
+.-+|+|.|||+|..|+.....= .. . +..+ |++.+... ..++.+.++ ..+ -
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG------------A~-~-V~aV-------e~S~ia~~----a~~iv~~N~---~~~-i 110 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG------------AR-K-VYAV-------EASSIADF----ARKIVKDNG---LED-V 110 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC------------cc-e-EEEE-------echHHHHH----HHHHHHhcC---ccc-e
Confidence 35799999999998888765432 11 1 2222 44444321 122222222 112 2
Q ss_pred eeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 130 ~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
+-.+.|.=.+-.+|...||+++|=|-=+||-. +.=+...|-+
T Consensus 111 i~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~--------------------------------------EsMldsVl~A 152 (346)
T KOG1499|consen 111 ITVIKGKVEDIELPVEKVDIIVSEWMGYFLLY--------------------------------------ESMLDSVLYA 152 (346)
T ss_pred EEEeecceEEEecCccceeEEeehhhhHHHHH--------------------------------------hhhhhhhhhh
Confidence 23444555566778899999999877666432 2234456899
Q ss_pred HHHHhccCceEE
Q 047625 210 RWEELKIGGRMI 221 (368)
Q Consensus 210 Ra~ELkpGG~lv 221 (368)
|-+-|+|||.++
T Consensus 153 RdkwL~~~G~i~ 164 (346)
T KOG1499|consen 153 RDKWLKEGGLIY 164 (346)
T ss_pred hhhccCCCceEc
Confidence 999999999875
No 142
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.85 E-value=0.69 Score=45.37 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.5
Q ss_pred ceEEeeecCCCCCCchHHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQ 71 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ 71 (368)
.-+|+|+|||+|.++..+...
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~ 101 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRV 101 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHh
Confidence 479999999999998877543
No 143
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=92.81 E-value=0.61 Score=41.23 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=25.3
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCC
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPG 99 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~ 99 (368)
...+++|+|||.|.-|..+++.. .+.-.|+=-|+..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~ 58 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGP 58 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSS
T ss_pred cccEEEEcCCcccceeeeeeecc--------------cccceEEEEeccc
Confidence 56999999999998887665443 1236777777753
No 144
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=92.69 E-value=0.11 Score=49.76 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=41.5
Q ss_pred cccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 047625 139 GRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGG 218 (368)
Q Consensus 139 ~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG 218 (368)
+-.+++.|+|.+.|.+.+||||.--.- .+-|+.-.+.|+|||
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~RR--------------------------------------~~~l~e~~r~lrpgg 137 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRERR--------------------------------------ERALEELLRVLRPGG 137 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHHHH--------------------------------------HHHHHHHHHHhcCCC
Confidence 456889999999999999998763221 113566788999999
Q ss_pred eEEEEeecCCC
Q 047625 219 RMILNFIGNDK 229 (368)
Q Consensus 219 ~lvl~~~g~~~ 229 (368)
.+++..-+...
T Consensus 138 ~~lvyvwa~~q 148 (293)
T KOG1331|consen 138 NALVYVWALEQ 148 (293)
T ss_pred ceEEEEehhhc
Confidence 99998887755
No 145
>PLN02672 methionine S-methyltransferase
Probab=92.24 E-value=0.27 Score=55.33 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhccCceEEEEeecCCC
Q 047625 204 TSFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 204 ~~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
.+++..-.+-|+|||+|+++++....
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~q~ 283 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGRPG 283 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECccHH
Confidence 45777888899999999999986643
No 146
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=92.21 E-value=0.052 Score=51.77 Aligned_cols=57 Identities=12% Similarity=-0.046 Sum_probs=36.2
Q ss_pred ceeeccCCCCCchHHhhCHHHHHHHHHhHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHH
Q 047625 5 QVLFMNGGEGDNSYAKNSAPPREAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQ 71 (368)
Q Consensus 5 ~~~~m~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ 71 (368)
..|.|.|=.-..+|.+|-..+..++..+...+. .....+|+|+|||+|..|..+.+.
T Consensus 7 ~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~----------~~~~~~VLEiG~G~G~lt~~L~~~ 63 (272)
T PRK00274 7 ELLERYGHRAKKSLGQNFLIDENILDKIVDAAG----------PQPGDNVLEIGPGLGALTEPLLER 63 (272)
T ss_pred HHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcC----------CCCcCeEEEeCCCccHHHHHHHHh
Confidence 345555544556777766666666544333221 123468999999999999887654
No 147
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=92.10 E-value=0.55 Score=45.85 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=69.5
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
--.++|+|||-|+- +++.-+.. -..- +-+-..|...||...-++.+..-. ++ ..+...|+
T Consensus 118 ~~~~~~LgCGKGGD-------LlKw~kAg-----I~~~-igiDIAevSI~qa~~RYrdm~~r~---~~----~~f~a~f~ 177 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGD-------LLKWDKAG-----IGEY-IGIDIAEVSINQARKRYRDMKNRF---KK----FIFTAVFI 177 (389)
T ss_pred ccccceeccCCccc-------HhHhhhhc-----ccce-EeeehhhccHHHHHHHHHHHHhhh---hc----ccceeEEE
Confidence 35678899999974 33332221 1111 444444555666666655432110 00 12334454
Q ss_pred eecCCCccccc---C--CCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRL---F--PPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTS 205 (368)
Q Consensus 131 ~~vp~SFy~~l---~--P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~ 205 (368)
. +-+|+++| + ++-++|++=|=.|+|+- . .+ +.-...
T Consensus 178 ~--~Dc~~~~l~d~~e~~dp~fDivScQF~~HYa------F------------------et-------------ee~ar~ 218 (389)
T KOG1975|consen 178 A--ADCFKERLMDLLEFKDPRFDIVSCQFAFHYA------F------------------ET-------------EESARI 218 (389)
T ss_pred E--eccchhHHHHhccCCCCCcceeeeeeeEeee------e------------------cc-------------HHHHHH
Confidence 4 44566332 2 44559999999999981 1 01 112245
Q ss_pred HHHHHHHHhccCceEEEEeecCCC
Q 047625 206 FLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 206 FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
+|+.-++.|+|||.|+-+++-.+.
T Consensus 219 ~l~Nva~~LkpGG~FIgTiPdsd~ 242 (389)
T KOG1975|consen 219 ALRNVAKCLKPGGVFIGTIPDSDV 242 (389)
T ss_pred HHHHHHhhcCCCcEEEEecCcHHH
Confidence 789999999999999999975543
No 148
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=91.43 E-value=2.1 Score=43.23 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhccCceEEEEee
Q 047625 198 QFESDFTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 198 Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
...+++..++..-.+-|+|||.+++..+
T Consensus 313 ~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 313 GACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 3456777788888899999999997663
No 149
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=91.00 E-value=0.38 Score=45.68 Aligned_cols=82 Identities=29% Similarity=0.355 Sum_probs=55.7
Q ss_pred CccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEe
Q 047625 145 CFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 145 ~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~ 224 (368)
...|.++|+.||.=.++-++ . +.+-|++-+.-|||||.|++..
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~-----------------------------~--------y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLD-----------------------------E--------YRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHH-----------------------------H--------HHHHHHHHHTTEEEEEEEEEEE
T ss_pred cchhhhhhhHHHHHHcCCHH-----------------------------H--------HHHHHHHHHHHcCCCcEEEEEE
Confidence 46999999999876544222 2 2334788899999999999988
Q ss_pred ecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEE
Q 047625 225 IGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLE 287 (368)
Q Consensus 225 ~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le 287 (368)
....+ .+. -| .-.+|...-+.+.+++.|+++| |.|...+
T Consensus 200 ~l~~t--~Y~-------------vG--------~~~F~~l~l~ee~v~~al~~aG-~~i~~~~ 238 (256)
T PF01234_consen 200 VLGST--YYM-------------VG--------GHKFPCLPLNEEFVREALEEAG-FDIEDLE 238 (256)
T ss_dssp ESS-S--EEE-------------ET--------TEEEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred EcCce--eEE-------------EC--------CEecccccCCHHHHHHHHHHcC-CEEEecc
Confidence 75544 000 02 2235667778899999999999 9999888
No 150
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=90.68 E-value=0.91 Score=44.48 Aligned_cols=24 Identities=4% Similarity=-0.112 Sum_probs=20.2
Q ss_pred CceEEeeecCCCCCCchHHHHHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAI 73 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii 73 (368)
...+|+|+|||+|.=|.++++.+.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~ 99 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALE 99 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH
Confidence 346899999999999998888773
No 151
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=89.67 E-value=1.1 Score=48.62 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEee
Q 047625 200 ESDFTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 200 ~~D~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
.+|+...+..-.+-|+|||.++++..
T Consensus 632 ~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 632 QRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 45666778888889999999988764
No 152
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=88.37 E-value=3 Score=39.83 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=30.5
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhc
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKS 108 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~ 108 (368)
+++||--.|||||-=.--+.--+.+.... ..+..++|+=.|+ |=..|=+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~------~~~~~~~I~AtDI---d~~~L~~A 145 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK------LAGFRVKILATDI---DLSVLEKA 145 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc------ccCCceEEEEEEC---CHHHHHHH
Confidence 58999999999996544332222222211 1223599999999 54544443
No 153
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=87.92 E-value=0.37 Score=46.65 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.9
Q ss_pred CceEEeeecCCCCCCchHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPT 69 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~ 69 (368)
+..+++|+|||||.+|+...
T Consensus 162 ~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred CCCEEEEecCChhHHHHHHH
Confidence 46899999999998887663
No 154
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=86.75 E-value=0.58 Score=45.33 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=14.3
Q ss_pred eEEeeecCCCCCCchHHH
Q 047625 52 IRFTDMGCSSGPNAFLPT 69 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~ 69 (368)
-+|+|+|||||.+++...
T Consensus 163 ~~vLDvG~GSGILaiaA~ 180 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAA 180 (295)
T ss_dssp SEEEEES-TTSHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHH
Confidence 599999999998877653
No 155
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=86.63 E-value=1.7 Score=40.55 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=17.6
Q ss_pred CceEEeeecCCCCCCchHHHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQ 71 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ 71 (368)
++-+|+|+||++|.-++.+...
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~ 89 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALA 89 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHh
Confidence 4679999999999877766544
No 156
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=86.07 E-value=1.4 Score=40.10 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=15.5
Q ss_pred HHHHHHHHhccCceEEEEe
Q 047625 206 FLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 206 FL~~Ra~ELkpGG~lvl~~ 224 (368)
.|+.-++.|+|||.|++.-
T Consensus 157 vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 157 VLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp HHHHHGGGEEEEEEEEE-T
T ss_pred HHHHHHHHcCCCCEEEEec
Confidence 5778889999999998753
No 157
>PHA03412 putative methyltransferase; Provisional
Probab=85.91 E-value=0.47 Score=44.52 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=18.1
Q ss_pred ceEEeeecCCCCCCchHHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQ 71 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ 71 (368)
..+|+|+|||+|..++.+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~ 70 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHM 70 (241)
T ss_pred CCEEEEccChHHHHHHHHHHh
Confidence 469999999999999877654
No 158
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=85.71 E-value=0.94 Score=38.63 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=26.9
Q ss_pred HHhHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHH
Q 047625 30 LKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQ 71 (368)
Q Consensus 30 ~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ 71 (368)
.++..++...++... ....+.+|+|+|||.|..|+.+...
T Consensus 7 ~~~~~~i~~~~~~~~--~~~~~~~vvD~GsG~GyLs~~La~~ 46 (141)
T PF13679_consen 7 ERMAELIDSLCDSVG--ESKRCITVVDLGSGKGYLSRALAHL 46 (141)
T ss_pred HHHHHHHHHHHHHhh--ccCCCCEEEEeCCChhHHHHHHHHH
Confidence 344455555544321 1245799999999999999988763
No 159
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=85.66 E-value=0.57 Score=43.68 Aligned_cols=20 Identities=20% Similarity=0.036 Sum_probs=16.9
Q ss_pred ceEEeeecCCCCCCchHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTW 70 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~ 70 (368)
.-+++|+|||+|..|..+++
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~ 95 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQ 95 (228)
T ss_pred CCEEEEcccCCCHHHHHHHH
Confidence 46899999999999886654
No 160
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=85.35 E-value=3.5 Score=42.65 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhccCceEEEEeecCCC
Q 047625 204 TSFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 204 ~~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
..+|..-++-|||||+||-+++.-..
T Consensus 222 ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 222 RELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 45788889999999999998876544
No 161
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=84.86 E-value=9.3 Score=35.58 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=33.6
Q ss_pred HHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEE
Q 047625 208 NFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLE 287 (368)
Q Consensus 208 ~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le 287 (368)
++-++-|+|||++++.++-.+. . ..| |=+.=+.+|+++++... |+|+.++
T Consensus 147 ~~l~~lL~pgg~llll~~~~~~--------------~--~~G------------PPf~v~~~e~~~lf~~~--~~i~~l~ 196 (226)
T PRK13256 147 KMMLEVCSNNTQILLLVMEHDK--------------K--SQT------------PPYSVTQAELIKNFSAK--IKFELID 196 (226)
T ss_pred HHHHHHhCCCcEEEEEEEecCC--------------C--CCC------------CCCcCCHHHHHHhccCC--ceEEEee
Confidence 4556779999999999874322 0 012 33445678999888643 7777766
Q ss_pred E
Q 047625 288 T 288 (368)
Q Consensus 288 ~ 288 (368)
.
T Consensus 197 ~ 197 (226)
T PRK13256 197 S 197 (226)
T ss_pred e
Confidence 4
No 162
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=83.43 E-value=3.7 Score=37.64 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhccCceEEE
Q 047625 199 FESDFTSFLNFRWEELKIGGRMIL 222 (368)
Q Consensus 199 ~~~D~~~FL~~Ra~ELkpGG~lvl 222 (368)
|..|+..-|..+..+||+|-++|.
T Consensus 133 F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 133 FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 445777788899999999877653
No 163
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=83.33 E-value=1.1 Score=43.37 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=33.1
Q ss_pred ceEEeeecCCCCCCchHHHHH------------HHHHHHHHhhhcCCCCCcceEEecCCCCCch
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQ------------AIEALDTICSRLKHKPPILHAFLNDLPGNDF 102 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~------------ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDf 102 (368)
.-+|+|+|||+|..|..+++. .++.+++.....+. .+.++++..|....|+
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-ASKLEVIEGDALKTEF 99 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCHhhhcc
Confidence 468999999999999988764 34455554332221 1347888877754343
No 164
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=83.11 E-value=14 Score=34.01 Aligned_cols=90 Identities=29% Similarity=0.442 Sum_probs=52.2
Q ss_pred ecCCCcccccCCC--CccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047625 132 VAPGSLYGRLFPP--CFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNF 209 (368)
Q Consensus 132 ~vp~SFy~~l~P~--~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~ 209 (368)
-.-|.||+ +-|. +++|+|+=..+|+=| ||+..+.|.+ .
T Consensus 101 ~~~gDfF~-l~~~~~g~fD~iyDr~~l~Al----------------------------pp~~R~~Ya~-----------~ 140 (218)
T PF05724_consen 101 IYCGDFFE-LPPEDVGKFDLIYDRTFLCAL----------------------------PPEMRERYAQ-----------Q 140 (218)
T ss_dssp EEES-TTT-GGGSCHHSEEEEEECSSTTTS-----------------------------GGGHHHHHH-----------H
T ss_pred EEEccccc-CChhhcCCceEEEEecccccC----------------------------CHHHHHHHHH-----------H
Confidence 34556665 2222 247888877777652 3344555555 4
Q ss_pred HHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeEeEEEEE
Q 047625 210 RWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNIHQLETS 289 (368)
Q Consensus 210 Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I~~le~~ 289 (368)
-++-|+|||++++.++-... + ...-|=|.-+.+||.+++. .+ |+|..++..
T Consensus 141 l~~ll~p~g~~lLi~l~~~~-------------------~--------~~~GPPf~v~~~ev~~l~~-~~-f~i~~l~~~ 191 (218)
T PF05724_consen 141 LASLLKPGGRGLLITLEYPQ-------------------G--------EMEGPPFSVTEEEVRELFG-PG-FEIEELEEE 191 (218)
T ss_dssp HHHCEEEEEEEEEEEEES-C-------------------S--------CSSSSS----HHHHHHHHT-TT-EEEEEEEEE
T ss_pred HHHHhCCCCcEEEEEEEcCC-------------------c--------CCCCcCCCCCHHHHHHHhc-CC-cEEEEEecc
Confidence 56789999996555543322 0 0112445568899999998 55 999999885
Q ss_pred e
Q 047625 290 H 290 (368)
Q Consensus 290 ~ 290 (368)
+
T Consensus 192 ~ 192 (218)
T PF05724_consen 192 D 192 (218)
T ss_dssp E
T ss_pred c
Confidence 4
No 165
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.83 E-value=0.59 Score=42.29 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=15.2
Q ss_pred ceEEeeecCCCCCCchHH
Q 047625 51 CIRFTDMGCSSGPNAFLP 68 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~ 68 (368)
--+|+|+|||||..++..
T Consensus 46 g~~V~DlG~GTG~La~ga 63 (198)
T COG2263 46 GKTVLDLGAGTGILAIGA 63 (198)
T ss_pred CCEEEEcCCCcCHHHHHH
Confidence 357999999999988765
No 166
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=82.45 E-value=0.6 Score=40.94 Aligned_cols=21 Identities=10% Similarity=-0.102 Sum_probs=17.4
Q ss_pred ceEEeeecCCCCCCchHHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQ 71 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ 71 (368)
.-+|+|+|||+|..|..+++.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER 34 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc
Confidence 358999999999988877543
No 167
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=81.84 E-value=6.1 Score=37.30 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=16.2
Q ss_pred eEEeeecCCCCCCchHHHHHH
Q 047625 52 IRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~~~i 72 (368)
-+|+|-|.|+|..|..+...+
T Consensus 42 ~~VlEaGtGSG~lt~~l~r~v 62 (247)
T PF08704_consen 42 SRVLEAGTGSGSLTHALARAV 62 (247)
T ss_dssp -EEEEE--TTSHHHHHHHHHH
T ss_pred CEEEEecCCcHHHHHHHHHHh
Confidence 899999999999999887666
No 168
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=81.17 E-value=1.6 Score=42.40 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=16.8
Q ss_pred ceEEeeecCCCCCCchHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTW 70 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~ 70 (368)
.-+|+|+|||+|..++.+.+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh
Confidence 47899999999998877653
No 169
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=80.21 E-value=0.88 Score=42.98 Aligned_cols=21 Identities=10% Similarity=-0.080 Sum_probs=17.8
Q ss_pred ceEEeeecCCCCCCchHHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQ 71 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ 71 (368)
.-+|+|+|||+|..|..+.+.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~ 50 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR 50 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh
Confidence 478999999999999887653
No 170
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=80.07 E-value=5.7 Score=38.20 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=26.5
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDL 97 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDL 97 (368)
...+|+|-.||+|..-+.++..+.+.-.. .++.+++-.|.
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~--------~~~~~i~G~ei 85 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNK--------IKEINIYGIEI 85 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHH--------HCCEEEEEEES
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccc--------cccceeEeecC
Confidence 35789999999998777666655332111 14588887887
No 171
>PLN02823 spermine synthase
Probab=79.79 E-value=6.3 Score=38.93 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=16.7
Q ss_pred HHH-HHHHHhccCceEEEEeec
Q 047625 206 FLN-FRWEELKIGGRMILNFIG 226 (368)
Q Consensus 206 FL~-~Ra~ELkpGG~lvl~~~g 226 (368)
|++ ...+-|+|||.+++....
T Consensus 201 F~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 201 FYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred HHHHHHHHhcCCCcEEEEeccC
Confidence 666 667899999999887643
No 172
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=79.61 E-value=1.6 Score=40.94 Aligned_cols=22 Identities=9% Similarity=-0.097 Sum_probs=17.9
Q ss_pred CceEEeeecCCCCCCchHHHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQ 71 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ 71 (368)
..-+|+|+|||+|..|..+.+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~ 50 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKR 50 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHh
Confidence 3579999999999988777654
No 173
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=78.80 E-value=1.3 Score=42.34 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhccCceEEEEeecCCC
Q 047625 203 FTSFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 203 ~~~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
+..|+..-.+-|+|||.++++..++..
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELVERKE 290 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEeccccc
Confidence 455777788999999999999998865
No 174
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=78.23 E-value=2.1 Score=42.03 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=14.2
Q ss_pred CceEEeeecCCCCCCchHH
Q 047625 50 DCIRFTDMGCSSGPNAFLP 68 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~ 68 (368)
...+|+|||||+|....++
T Consensus 114 ~~~~vLDIGtGag~I~~lL 132 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLI 132 (321)
T ss_pred CCceEEEecCCccHHHHHH
Confidence 3589999999999544443
No 175
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=77.89 E-value=1.8 Score=39.47 Aligned_cols=19 Identities=21% Similarity=0.051 Sum_probs=15.5
Q ss_pred eEEeeecCCCCCCchHHHH
Q 047625 52 IRFTDMGCSSGPNAFLPTW 70 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~~ 70 (368)
.+|+|+|||+|..++.+++
T Consensus 55 ~~vLDl~~GsG~l~l~~ls 73 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALS 73 (199)
T ss_pred CEEEEcCCCccHHHHHHHH
Confidence 5899999999988875443
No 176
>PRK04148 hypothetical protein; Provisional
Probab=75.73 E-value=7.2 Score=33.34 Aligned_cols=18 Identities=11% Similarity=-0.125 Sum_probs=13.7
Q ss_pred ceEEeeecCCCCC-CchHH
Q 047625 51 CIRFTDMGCSSGP-NAFLP 68 (368)
Q Consensus 51 ~~~IaD~GCs~G~-ns~~~ 68 (368)
..+|+|+|||+|. .+..+
T Consensus 17 ~~kileIG~GfG~~vA~~L 35 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKL 35 (134)
T ss_pred CCEEEEEEecCCHHHHHHH
Confidence 4789999999996 44444
No 177
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=74.06 E-value=2.5 Score=39.60 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCce
Q 047625 202 DFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSF 281 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF 281 (368)
++..++-.-+..|+|||.|.++.-.-+.+...+ +-+. .=|..+..=++..++..| |
T Consensus 203 ~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~----------------l~ps-------~RyAH~~~YVr~~l~~~G-l 258 (287)
T COG4976 203 ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFV----------------LGPS-------QRYAHSESYVRALLAASG-L 258 (287)
T ss_pred chhhHHHHHHHhcCCCceEEEEecccCCCCCee----------------cchh-------hhhccchHHHHHHHHhcC-c
Confidence 344467777899999999999885433311101 0010 015566667889999999 9
Q ss_pred eEeEEEEEe
Q 047625 282 NIHQLETSH 290 (368)
Q Consensus 282 ~I~~le~~~ 290 (368)
.|..++...
T Consensus 259 ~~i~~~~tt 267 (287)
T COG4976 259 EVIAIEDTT 267 (287)
T ss_pred eEEEeeccc
Confidence 998887654
No 178
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=73.91 E-value=12 Score=35.84 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=35.2
Q ss_pred cceEEcccccccccCCcccccccCCCCCcCccc---EEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEE
Q 047625 147 LNLVYSSFCLNWLSQVPKELVSECGIPLLNKRD---VCVAKTCSPSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILN 223 (368)
Q Consensus 147 id~~~S~~alhWls~~P~~~~~~~~~~~~nk~~---i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~ 223 (368)
-|+++++++|-=|.. . ...+-- ...|++.. |.|-..+ | ..+...+++|..=+..|+.++.=
T Consensus 103 ~DLvi~s~~L~EL~~-~-~r~~lv-~~LW~~~~~~LVlVEpGt-~------------~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 103 DDLVIASYVLNELPS-A-ARAELV-RSLWNKTAPVLVLVEPGT-P------------AGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred CcEEEEehhhhcCCc-h-HHHHHH-HHHHHhccCcEEEEcCCC-h------------HHHHHHHHHHHHHhhCCCceECC
Confidence 399999999875544 1 100000 02333322 3343333 2 35666778888777788777665
Q ss_pred ee
Q 047625 224 FI 225 (368)
Q Consensus 224 ~~ 225 (368)
+.
T Consensus 167 Cp 168 (274)
T PF09243_consen 167 CP 168 (274)
T ss_pred Cc
Confidence 54
No 179
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=73.30 E-value=3.1 Score=41.01 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEee
Q 047625 200 ESDFTSFLNFRWEELKIGGRMILNFI 225 (368)
Q Consensus 200 ~~D~~~FL~~Ra~ELkpGG~lvl~~~ 225 (368)
++=+.++|.+| +-|+|.|.|+=..+
T Consensus 259 ERMLEsYl~Ar-k~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 259 ERMLESYLHAR-KWLKPNGKMFPTVG 283 (517)
T ss_pred HHHHHHHHHHH-hhcCCCCcccCccc
Confidence 35677899999 99999999976654
No 180
>PRK11524 putative methyltransferase; Provisional
Probab=72.56 E-value=7.4 Score=37.24 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhccCceEEEEe
Q 047625 203 FTSFLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 203 ~~~FL~~Ra~ELkpGG~lvl~~ 224 (368)
+..+|....+-|||||.|++.+
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5678899999999999999964
No 181
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=71.08 E-value=2.1 Score=44.01 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=16.7
Q ss_pred ceEEeeecCCCCCCchHHHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~i 72 (368)
...|+|+|||+|+++...++..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTT
T ss_pred ceEEEEeCCCccHHHHHHHHHH
Confidence 5899999999999988776554
No 182
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=69.82 E-value=3.5 Score=33.99 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhccCceEEEEe
Q 047625 201 SDFTSFLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 201 ~D~~~FL~~Ra~ELkpGG~lvl~~ 224 (368)
.-+.+|++.-++-|+|||+|+++-
T Consensus 21 ~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 21 EGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeC
Confidence 467889999999999999999986
No 183
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=68.73 E-value=4.3 Score=36.53 Aligned_cols=21 Identities=14% Similarity=-0.077 Sum_probs=17.2
Q ss_pred ceEEeeecCCCCCCchHHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQ 71 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ 71 (368)
.-+++|++||+|..++.+++.
T Consensus 50 g~~vLDLfaGsG~lglea~sr 70 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSR 70 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhC
Confidence 368999999999888877644
No 184
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=68.36 E-value=4.8 Score=41.14 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=16.6
Q ss_pred ceEEeeecCCCCCCchHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTW 70 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~ 70 (368)
..+|+|+|||+|..|+.+..
T Consensus 298 ~~~VLDlgcGtG~~sl~la~ 317 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLAR 317 (443)
T ss_pred CCEEEEEeccCCHHHHHHHH
Confidence 36899999999998887643
No 185
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=67.19 E-value=9.7 Score=35.25 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=60.7
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCcee
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCF 129 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f 129 (368)
..++++|+||=+..|.+... +.+.|.--||-+. -+.
T Consensus 51 ~~lrlLEVGals~~N~~s~~------------------~~fdvt~IDLns~--------~~~------------------ 86 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACSTS------------------GWFDVTRIDLNSQ--------HPG------------------ 86 (219)
T ss_pred ccceEEeecccCCCCccccc------------------CceeeEEeecCCC--------CCC------------------
Confidence 45999999998877765431 2366676677220 000
Q ss_pred eeecCCCcccccC---CCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q 047625 130 IGVAPGSLYGRLF---PPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSF 206 (368)
Q Consensus 130 ~~~vp~SFy~~l~---P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~F 206 (368)
..--.|.++-. +.+++|+|..|-.|.+ +|.+.. +| .-
T Consensus 87 --I~qqDFm~rplp~~~~e~FdvIs~SLVLNf---VP~p~~---------RG--------------------------~M 126 (219)
T PF11968_consen 87 --ILQQDFMERPLPKNESEKFDVISLSLVLNF---VPDPKQ---------RG--------------------------EM 126 (219)
T ss_pred --ceeeccccCCCCCCcccceeEEEEEEEEee---CCCHHH---------HH--------------------------HH
Confidence 01123455544 4789999999999988 676431 11 13
Q ss_pred HHHHHHHhccCce-----EEEEeecC
Q 047625 207 LNFRWEELKIGGR-----MILNFIGN 227 (368)
Q Consensus 207 L~~Ra~ELkpGG~-----lvl~~~g~ 227 (368)
|+.-.+-|+|+|. |+++++-+
T Consensus 127 l~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 127 LRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred HHHHHHHhCCCCccCcceEEEEeCch
Confidence 6777788999999 88888633
No 186
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=66.54 E-value=18 Score=34.64 Aligned_cols=64 Identities=28% Similarity=0.330 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCc
Q 047625 201 SDFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGS 280 (368)
Q Consensus 201 ~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~Gs 280 (368)
+++-.+|....+-||||| +...+|+-- .-++ ++ + +. +-.....|.+|++.+++.-|
T Consensus 179 ~Ni~~Yi~tI~~lLkpgG--~WIN~GPLl---yh~~-------~~---~-~~-------~~~sveLs~eEi~~l~~~~G- 234 (270)
T PF07942_consen 179 ENIIEYIETIEHLLKPGG--YWINFGPLL---YHFE-------PM---S-IP-------NEMSVELSLEEIKELIEKLG- 234 (270)
T ss_pred HHHHHHHHHHHHHhccCC--EEEecCCcc---ccCC-------CC---C-CC-------CCcccCCCHHHHHHHHHHCC-
Confidence 356668999999999999 455555522 0010 10 0 00 00115567999999999999
Q ss_pred eeEeEEEE
Q 047625 281 FNIHQLET 288 (368)
Q Consensus 281 F~I~~le~ 288 (368)
|++..-+.
T Consensus 235 F~~~~~~~ 242 (270)
T PF07942_consen 235 FEIEKEES 242 (270)
T ss_pred CEEEEEEE
Confidence 99987765
No 187
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=66.11 E-value=10 Score=36.08 Aligned_cols=52 Identities=19% Similarity=0.049 Sum_probs=38.6
Q ss_pred ceEEeeecCCCCCCchHHHHHH------------HHHHHHHhhhcCCCCCcceEEecCCCCCchhhhh
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQA------------IEALDTICSRLKHKPPILHAFLNDLPGNDFNTLS 106 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~i------------i~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf 106 (368)
.-+|+|+|+|.|..|..+++.. +..+++.. .....++|+..|--.=||.+++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~----~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF----APYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc----ccccceEEEeCchhcCcchhhc
Confidence 5899999999999999988764 33444432 1234599999998777888754
No 188
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=65.52 E-value=11 Score=35.66 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=18.5
Q ss_pred CceEEeeecCCCCCCchHHHHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~i 72 (368)
++-+|+|+|++.|.-|+.+...+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al 101 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALAL 101 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhC
Confidence 46799999999998888765443
No 189
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=63.62 E-value=19 Score=33.42 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.1
Q ss_pred CceEEeeecCCCCCCchHHHHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~i 72 (368)
++-+|+|+|.+.|.-|+.+...+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l 81 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALAL 81 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhC
Confidence 57899999999999988887665
No 190
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=62.58 E-value=6.5 Score=36.89 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCceeE
Q 047625 204 TSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSFNI 283 (368)
Q Consensus 204 ~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF~I 283 (368)
...|-.-...++|||-+++.. +..+++-.+.+. ..|++...++ .-+-..++.....+.| |.+
T Consensus 158 ~~iLp~l~~l~~~~~~~v~Lv-------KPQFEagr~~v~---kkGvv~d~~~-------~~~v~~~i~~~~~~~g-~~~ 219 (245)
T COG1189 158 KLILPALLLLLKDGGDLVLLV-------KPQFEAGREQVG---KKGVVRDPKL-------HAEVLSKIENFAKELG-FQV 219 (245)
T ss_pred HHHHHHHHHhcCCCceEEEEe-------cchhhhhhhhcC---cCceecCcch-------HHHHHHHHHHHHhhcC-cEE
Confidence 335666677888888877765 223444433332 3455443221 2334567777777777 888
Q ss_pred eEEEEE
Q 047625 284 HQLETS 289 (368)
Q Consensus 284 ~~le~~ 289 (368)
..+...
T Consensus 220 ~gl~~S 225 (245)
T COG1189 220 KGLIKS 225 (245)
T ss_pred eeeEcc
Confidence 776543
No 191
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=60.59 E-value=4.2 Score=37.41 Aligned_cols=33 Identities=21% Similarity=0.094 Sum_probs=22.5
Q ss_pred HHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHH
Q 047625 207 LNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLND 244 (368)
Q Consensus 207 L~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~ 244 (368)
|..=+=-|++||.++..+ ++..+++++...+.+
T Consensus 166 ~~eyay~l~~gg~~ytit-----Dv~elh~wm~~~~e~ 198 (249)
T KOG3115|consen 166 LSEYAYVLREGGILYTIT-----DVKELHEWMVKHLEE 198 (249)
T ss_pred HHHHHhhhhcCceEEEEe-----eHHHHHHHHHHHHHh
Confidence 444556688999988876 455567766666654
No 192
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=59.40 E-value=8.9 Score=38.30 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=15.9
Q ss_pred eEEeeecCCCCCCchHHH
Q 047625 52 IRFTDMGCSSGPNAFLPT 69 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~ 69 (368)
-+|+|+|||+|..|+.+.
T Consensus 235 ~~vLDL~cG~G~~~l~la 252 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA 252 (374)
T ss_pred CEEEEccCCccHHHHHHh
Confidence 589999999999888775
No 193
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=58.75 E-value=11 Score=37.97 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=41.0
Q ss_pred CCCchHHhhCHHHHHHHHHhHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceE
Q 047625 13 EGDNSYAKNSAPPREAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHA 92 (368)
Q Consensus 13 ~g~~sY~~nS~~Q~~~~~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v 92 (368)
.+.-.|+-|...-+.+...+...+.. .....+|+|++||+|..++.+.... +.-.|
T Consensus 29 ~~~vFyqp~~~~nrdl~~~v~~~~~~---------~~~~~~vLDl~aGsG~~~l~~a~~~---------------~~~~V 84 (382)
T PRK04338 29 WAPVFYNPRMELNRDISVLVLRAFGP---------KLPRESVLDALSASGIRGIRYALET---------------GVEKV 84 (382)
T ss_pred CCCeeeCccccchhhHHHHHHHHHHh---------hcCCCEEEECCCcccHHHHHHHHHC---------------CCCEE
Confidence 35578888887777666555444321 0123689999999999988875543 11468
Q ss_pred EecCC
Q 047625 93 FLNDL 97 (368)
Q Consensus 93 ~~nDL 97 (368)
+.+|.
T Consensus 85 ~a~Di 89 (382)
T PRK04338 85 TLNDI 89 (382)
T ss_pred EEEeC
Confidence 88888
No 194
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=58.70 E-value=10 Score=34.34 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=10.6
Q ss_pred eEEeeecCCCCC
Q 047625 52 IRFTDMGCSSGP 63 (368)
Q Consensus 52 ~~IaD~GCs~G~ 63 (368)
-+|+|||||-|.
T Consensus 69 ~~VlDLGtGNG~ 80 (227)
T KOG1271|consen 69 DRVLDLGTGNGH 80 (227)
T ss_pred cceeeccCCchH
Confidence 399999999994
No 195
>PRK13699 putative methylase; Provisional
Probab=58.38 E-value=20 Score=33.26 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhccCceEEEEe
Q 047625 204 TSFLNFRWEELKIGGRMILNF 224 (368)
Q Consensus 204 ~~FL~~Ra~ELkpGG~lvl~~ 224 (368)
..++..-++-|||||.|++.+
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 467788889999999888644
No 196
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=58.01 E-value=9.5 Score=38.70 Aligned_cols=20 Identities=15% Similarity=0.033 Sum_probs=17.0
Q ss_pred ceEEeeecCCCCCCchHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTW 70 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~ 70 (368)
..+|+|+|||+|..|+.+..
T Consensus 293 ~~~vLDl~cG~G~~sl~la~ 312 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAK 312 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHH
Confidence 46899999999999987653
No 197
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=56.38 E-value=10 Score=31.24 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=12.8
Q ss_pred CceEEeeecCCCCCCc
Q 047625 50 DCIRFTDMGCSSGPNA 65 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns 65 (368)
.+...+|+|||-|-..
T Consensus 58 ~~~~FVDlGCGNGLLV 73 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLV 73 (112)
T ss_pred CCCceEEccCCchHHH
Confidence 4678999999999443
No 198
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=55.97 E-value=14 Score=35.77 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=15.0
Q ss_pred HHHHHHHHHhccCceEEEE
Q 047625 205 SFLNFRWEELKIGGRMILN 223 (368)
Q Consensus 205 ~FL~~Ra~ELkpGG~lvl~ 223 (368)
..++.-++.|+|||+|++.
T Consensus 243 ~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 243 RILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred HHHHHHHHHhCCCcEEEEe
Confidence 4678889999999987543
No 199
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=55.24 E-value=13 Score=36.99 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=15.9
Q ss_pred eEEeeecCCCCCCchHHHH
Q 047625 52 IRFTDMGCSSGPNAFLPTW 70 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~~ 70 (368)
.+++|++||+|..|+.+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~ 226 (362)
T PRK05031 208 GDLLELYCGNGNFTLALAR 226 (362)
T ss_pred CeEEEEeccccHHHHHHHh
Confidence 4699999999999995543
No 200
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=54.80 E-value=11 Score=37.29 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=15.9
Q ss_pred eEEeeecCCCCCCchHHHH
Q 047625 52 IRFTDMGCSSGPNAFLPTW 70 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~~ 70 (368)
.+|+|+|||+|..|+.+..
T Consensus 199 ~~vlDl~~G~G~~sl~la~ 217 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQ 217 (353)
T ss_pred CcEEEEeccccHHHHHHHH
Confidence 3699999999999996544
No 201
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=52.04 E-value=9 Score=33.45 Aligned_cols=17 Identities=24% Similarity=0.643 Sum_probs=14.3
Q ss_pred CceEEeeecCCCCCCch
Q 047625 50 DCIRFTDMGCSSGPNAF 66 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~ 66 (368)
..-+|+|+|||.|-.++
T Consensus 48 Egkkl~DLgcgcGmLs~ 64 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI 64 (185)
T ss_pred cCcchhhhcCchhhhHH
Confidence 35789999999998874
No 202
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=51.28 E-value=40 Score=32.75 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeecCCC
Q 047625 201 SDFTSFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 201 ~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
.-+..+|..-..-|+|||+|++..+-.-+
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlE 241 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLE 241 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHH
Confidence 56889999999999999999999875543
No 203
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=50.89 E-value=15 Score=33.55 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=17.5
Q ss_pred ceEEeeecCCCCCCchHHHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~i 72 (368)
--+|+|+||+-|.=|.-+++..
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~ 91 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRV 91 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhh
Confidence 4899999999998776665554
No 204
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=49.32 E-value=15 Score=36.57 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=16.8
Q ss_pred ceEEeeecCCCCCCchHHHH
Q 047625 51 CIRFTDMGCSSGPNAFLPTW 70 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~ 70 (368)
-.+++|+|||+|.-|-.+++
T Consensus 212 g~~vlDLGAsPGGWT~~L~~ 231 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVR 231 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHH
Confidence 47999999999999966653
No 205
>PHA03297 envelope glycoprotein L; Provisional
Probab=49.28 E-value=3 Score=36.02 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=39.4
Q ss_pred CCCceEEeeecCCCCCCc------hHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC----CCchhhh
Q 047625 48 FPDCIRFTDMGCSSGPNA------FLPTWQAIEALDTICSRLKHKPPILHAFLNDLP----GNDFNTL 105 (368)
Q Consensus 48 ~~~~~~IaD~GCs~G~ns------~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp----~NDfn~l 105 (368)
.+++-||++-.||+|+.- -..+.++...+....-...+++||.-+.+.|-+ .|-|-.+
T Consensus 37 ~gepkrileascgsgpimkgqlytaP~V~NL~~~laGIvVK~~CsPPEaILW~~~~~~aYWvNPyvvi 104 (185)
T PHA03297 37 PGEPKRILEASCGSGPIMKGQLFTSPNIKNLLNRTTGIMVKAHCNPPEAILWVDTPPKPVWVNPFAVI 104 (185)
T ss_pred CCCchhhhhhccCCCcccccccccCCCchhhhhhhceeEEecCCCCceeEEEecCCCceEEecHHHHH
Confidence 346899999999999853 345556655444332224468899999999965 5666554
No 206
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=48.87 E-value=7.8 Score=32.33 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.0
Q ss_pred EEeeecCCCCCCchHHH
Q 047625 53 RFTDMGCSSGPNAFLPT 69 (368)
Q Consensus 53 ~IaD~GCs~G~ns~~~~ 69 (368)
+|+|+||+.|..|+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 58999999998876654
No 207
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=42.72 E-value=47 Score=31.52 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=28.1
Q ss_pred HHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhc
Q 047625 206 FLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLE 257 (368)
Q Consensus 206 FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d 257 (368)
.|.+.+..|||||++++-.+.-.. +...+..|-+.|.++.+.++
T Consensus 177 ~le~~~~~Lkpgg~~~~y~P~veQ--------v~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 177 VLEHVSDALKPGGVVVVYSPTVEQ--------VEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred HHHHHHHHhCCCcEEEEEcCCHHH--------HHHHHHHHHhcCccchhhhe
Confidence 478999999999999998864433 33334444344655554433
No 208
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=40.54 E-value=27 Score=36.45 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=26.9
Q ss_pred CceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDL 97 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDL 97 (368)
...+|+|.|||+|...+.++..+... .....-+.+++.-|.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~-------~~~~~~~~~i~g~DI 71 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEI-------NYFKEVELNIYFADI 71 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhc-------CCcccceeeeeeech
Confidence 46899999999999888776665211 000112467777776
No 209
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.42 E-value=19 Score=32.51 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCCchhhhccCCcccccCCHH
Q 047625 237 LMGMVLNDMVYEGLIEESKLESFNYPIYYPCVE 269 (368)
Q Consensus 237 ~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~ 269 (368)
.+.+.++.||++|+|..+++-+-|+=|.||+..
T Consensus 31 ~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~ 63 (188)
T PF03962_consen 31 SVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQA 63 (188)
T ss_pred hHHHHHHHHhccccchhhhccCeeEEEecChHH
Confidence 578889999999999999999999999999875
No 210
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=39.26 E-value=14 Score=32.68 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.5
Q ss_pred EEeeecCCCCCCchHHHHHH
Q 047625 53 RFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 53 ~IaD~GCs~G~ns~~~~~~i 72 (368)
+|+|.-||.|.||+.+....
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~ 21 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF 21 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT
T ss_pred EEEEeccCcCHHHHHHHHhC
Confidence 69999999999999887653
No 211
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=38.32 E-value=24 Score=31.57 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHcCCCchhhhccCCcccccCCH
Q 047625 234 VFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCV 268 (368)
Q Consensus 234 ~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~ 268 (368)
++..+.+.+++||++|+++.|++.+-|+=|.|+|.
T Consensus 41 Vl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 41 VLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred HHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 45678889999999999999999999999999875
No 212
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=37.98 E-value=39 Score=32.94 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhccCceEEEEeecCCC
Q 047625 198 QFESDFTSFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 198 Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
+==..+..+|.+--+-|+|||||++..+-.-+
T Consensus 218 dEL~~L~~~L~~a~~~L~~gGRl~VIsFHSLE 249 (314)
T COG0275 218 DELEELEEALEAALDLLKPGGRLAVISFHSLE 249 (314)
T ss_pred hHHHHHHHHHHHHHHhhCCCcEEEEEEecchH
Confidence 33467899999999999999999999885543
No 213
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=37.57 E-value=1.1e+02 Score=27.25 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=42.7
Q ss_pred HHHHHHHhccCceEEEEeecC-CC--c---------------------cchHHHHHHHHHHHHHHcCCCchhhhccCCcc
Q 047625 207 LNFRWEELKIGGRMILNFIGN-DK--H---------------------HTGVFELMGMVLNDMVYEGLIEESKLESFNYP 262 (368)
Q Consensus 207 L~~Ra~ELkpGG~lvl~~~g~-~~--e---------------------~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P 262 (368)
+..|.+-|..-+--++.++|- ++ | ....|+.+.+-++.|+++|.++++..+ ..
T Consensus 86 ~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~---~~ 162 (178)
T TIGR00730 86 MHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK---LI 162 (178)
T ss_pred HHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC---cE
Confidence 356777777777777776643 44 1 112366666667777778877776543 34
Q ss_pred cccCCHHHHHHHHHh
Q 047625 263 IYYPCVEEVRQVIER 277 (368)
Q Consensus 263 ~y~ps~~E~~~~l~~ 277 (368)
....+++|+.+.|++
T Consensus 163 ~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 163 HVVSRPDELIEQVQN 177 (178)
T ss_pred EEcCCHHHHHHHHHh
Confidence 456777777776653
No 214
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=36.31 E-value=24 Score=36.20 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=23.1
Q ss_pred HHHHHhhhcCCCCCceEEeeecCCCCCCchHHHH
Q 047625 37 HESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTW 70 (368)
Q Consensus 37 ~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~ 70 (368)
+++|.+...-+..+-.-++|||.|||-.|+..+.
T Consensus 53 ~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvr 86 (636)
T KOG1501|consen 53 EKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVR 86 (636)
T ss_pred HHHhcccceeccCceEEEEEccCCccHHHHHHHH
Confidence 4444443333334568899999999999987654
No 215
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=36.31 E-value=76 Score=31.74 Aligned_cols=26 Identities=8% Similarity=-0.179 Sum_probs=21.3
Q ss_pred cCCCcccccCCCCccceEEccccccc
Q 047625 133 APGSLYGRLFPPCFLNLVYSSFCLNW 158 (368)
Q Consensus 133 vp~SFy~~l~P~~sid~~~S~~alhW 158 (368)
+-+-|-+..|++++.|++.+.-+.+.
T Consensus 165 ~~~~~~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 165 VVADFGKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred ehhhhhcCCCCccccCcEEEEeeccc
Confidence 66677788899999999888777766
No 216
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=36.12 E-value=37 Score=33.11 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeecCCC
Q 047625 201 SDFTSFLNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 201 ~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
.-+..+|..-..-|+|||||++..+-.-+
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLE 245 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLE 245 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHH
Confidence 46788999999999999999999875543
No 217
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=31.93 E-value=1.3e+02 Score=30.38 Aligned_cols=121 Identities=16% Similarity=0.193 Sum_probs=69.8
Q ss_pred CCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCce
Q 047625 49 PDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSC 128 (368)
Q Consensus 49 ~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~ 128 (368)
++..+++=+|-|+|--. +.+.+. + ..-|+.+-||-- ..-.+++. ..+
T Consensus 288 ~~a~~vLvlGGGDGLAl--------Rellky------P-~~~qI~lVdLDP-~miela~~-----------------~~v 334 (508)
T COG4262 288 RGARSVLVLGGGDGLAL--------RELLKY------P-QVEQITLVDLDP-RMIELASH-----------------ATV 334 (508)
T ss_pred cccceEEEEcCCchHHH--------HHHHhC------C-CcceEEEEecCH-HHHHHhhh-----------------hhH
Confidence 45688999999999322 122221 1 147888888820 11112221 111
Q ss_pred eeeecCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEc--CCCCCHHHHHHHHHHHHHHHHHH
Q 047625 129 FIGVAPGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVA--KTCSPSNVHKAYLDQFESDFTSF 206 (368)
Q Consensus 129 f~~~vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~--~~s~~~~v~~ay~~Q~~~D~~~F 206 (368)
...--.|||++. .++ +++--|++||...-... | .|.+. ..+ .|...+.|+.- |
T Consensus 335 lr~~N~~sf~dp-----Rv~-Vv~dDAf~wlr~a~~~f-D----------~vIVDl~DP~-tps~~rlYS~e-------F 389 (508)
T COG4262 335 LRALNQGSFSDP-----RVT-VVNDDAFQWLRTAADMF-D----------VVIVDLPDPS-TPSIGRLYSVE-------F 389 (508)
T ss_pred hhhhccCCccCC-----eeE-EEeccHHHHHHhhcccc-c----------EEEEeCCCCC-CcchhhhhhHH-------H
Confidence 222345677743 233 57888999998764421 1 11111 122 45567778774 6
Q ss_pred HHHHHHHhccCceEEEEeecC
Q 047625 207 LNFRWEELKIGGRMILNFIGN 227 (368)
Q Consensus 207 L~~Ra~ELkpGG~lvl~~~g~ 227 (368)
-..-++.|+++|+||++-+..
T Consensus 390 Y~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 390 YRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred HHHHHHhcCcCceEEEecCCC
Confidence 777889999999999987644
No 218
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=30.16 E-value=50 Score=30.64 Aligned_cols=51 Identities=29% Similarity=0.511 Sum_probs=29.4
Q ss_pred cCCCcccccCCCCccceEEcccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047625 133 APGSLYGRLFPPCFLNLVYSSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSFLNFRW 211 (368)
Q Consensus 133 vp~SFy~~l~P~~sid~~~S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~FL~~Ra 211 (368)
-||.+|+.+||.+-+-+ |+++.+. -|-+...+ | +-.+|..+|..+||.=-+
T Consensus 133 ~~~~~~N~~fpg~~iaM-------------P~~L~~~---------~v~y~dGt-~-----at~~q~a~DVv~FL~w~a 183 (219)
T PF02167_consen 133 RPGGYYNPYFPGGAIAM-------------PPPLSDG---------QVEYDDGT-P-----ATVDQMAKDVVNFLAWAA 183 (219)
T ss_dssp STTSEEETTSTTSEESS---------------TSSTT---------SS-BTTTB---------HHHHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCcccc-------------hhhhhhh---------cccccCCC-c-----chHHHHHHHHHHHHHHHc
Confidence 68889999998654432 6656542 12111111 2 335889999999998443
No 219
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=29.91 E-value=1.1e+02 Score=30.33 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=28.8
Q ss_pred HHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHH
Q 047625 205 SFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDM 245 (368)
Q Consensus 205 ~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l 245 (368)
.||+.-.+....||+.++-.+..+- .+.+.=++..-|..|
T Consensus 220 dFLk~VhecVa~GGkvlIPvFALGR-AQElCiLLd~YWERm 259 (501)
T KOG1136|consen 220 DFLKKVHECVARGGKVLIPVFALGR-AQELCILLDDYWERM 259 (501)
T ss_pred HHHHHHHHHHhcCCeEEEEeeecch-HHHHHHHHHHHHHhh
Confidence 4899999999999999999987665 222333444556554
No 220
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=29.85 E-value=23 Score=33.54 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=13.8
Q ss_pred CCceEEeeecCCCCCCchHHH
Q 047625 49 PDCIRFTDMGCSSGPNAFLPT 69 (368)
Q Consensus 49 ~~~~~IaD~GCs~G~ns~~~~ 69 (368)
+.+-+|+|+|||-=|.++..|
T Consensus 104 ~~p~sVlDigCGlNPlalp~~ 124 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWM 124 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTT
T ss_pred CCCchhhhhhccCCceehhhc
Confidence 458999999998877777544
No 221
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=29.10 E-value=41 Score=32.92 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhccCceEEEEeecCC
Q 047625 201 SDFTSFLNFRWEELKIGGRMILNFIGND 228 (368)
Q Consensus 201 ~D~~~FL~~Ra~ELkpGG~lvl~~~g~~ 228 (368)
.-|..+|..-.+-|+||||+++..+-.-
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSL 245 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSL 245 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecch
Confidence 4688899999999999999999997543
No 222
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.81 E-value=52 Score=30.53 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.5
Q ss_pred eEEeeecCCCCCCchHHH
Q 047625 52 IRFTDMGCSSGPNAFLPT 69 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~ 69 (368)
.+++|+|.|||.+|-.+.
T Consensus 84 ~s~LdvGsGSGYLt~~~~ 101 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFA 101 (237)
T ss_pred cceeecCCCccHHHHHHH
Confidence 789999999999887653
No 223
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=28.30 E-value=39 Score=32.80 Aligned_cols=21 Identities=10% Similarity=-0.103 Sum_probs=18.8
Q ss_pred eEEeeecCCCCCCchHHHHHH
Q 047625 52 IRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~~~i 72 (368)
.+++|.+||.|.-|..+++.+
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~ 41 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERL 41 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhC
Confidence 689999999999999988765
No 224
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=27.61 E-value=83 Score=29.58 Aligned_cols=23 Identities=9% Similarity=-0.020 Sum_probs=19.6
Q ss_pred CceEEeeecCCCCCCchHHHHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~i 72 (368)
..-.|+|+|.|.|..|..+.+..
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~ 52 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG 52 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS
T ss_pred CCCEEEEeCCCCccchhhHhccc
Confidence 45899999999999999887653
No 225
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.45 E-value=61 Score=28.71 Aligned_cols=25 Identities=24% Similarity=0.123 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhccCceEEEEeecC
Q 047625 203 FTSFLNFRWEELKIGGRMILNFIGN 227 (368)
Q Consensus 203 ~~~FL~~Ra~ELkpGG~lvl~~~g~ 227 (368)
...+|+.+.+=|||||+|-+.++..
T Consensus 65 g~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 65 GTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred HHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 3458899999999999999999744
No 226
>smart00400 ZnF_CHCC zinc finger.
Probab=27.41 E-value=46 Score=23.38 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.5
Q ss_pred eEEeeecCCCCCCchHHHHHH
Q 047625 52 IRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~~~i 72 (368)
-..-++||+.|.+.+-++..+
T Consensus 22 n~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 22 QFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CEEEEeCCCCCCCHHHHHHHH
Confidence 557789999999998887765
No 227
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=27.37 E-value=55 Score=30.53 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=16.7
Q ss_pred CceEEeeecCCCCCCchHHHHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~i 72 (368)
.+++|+|+|.|+|.+..-+++.+
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l 40 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYL 40 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHH
Confidence 36999999999998776665554
No 228
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=26.85 E-value=91 Score=28.71 Aligned_cols=21 Identities=10% Similarity=-0.118 Sum_probs=17.4
Q ss_pred eEEeeecCCCCCCchHHHHHH
Q 047625 52 IRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 52 ~~IaD~GCs~G~ns~~~~~~i 72 (368)
.+|+|+=-|.|..|.++-..+
T Consensus 50 ~tVid~~PGgGy~TrI~s~~v 70 (238)
T COG4798 50 ATVIDLIPGGGYFTRIFSPAV 70 (238)
T ss_pred CEEEEEecCCccHhhhhchhc
Confidence 799999999999998775443
No 229
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=26.60 E-value=57 Score=32.71 Aligned_cols=64 Identities=16% Similarity=0.065 Sum_probs=42.9
Q ss_pred CCchHHhhCHHHHHHHHHhHHHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEE
Q 047625 14 GDNSYAKNSAPPREAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAF 93 (368)
Q Consensus 14 g~~sY~~nS~~Q~~~~~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~ 93 (368)
+...||-.+..-|.+.-.+...+.+... ....++|+|+.||+|.-++...+.+ ... -.|+
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~~------~~~~~~vLD~faGsG~rgir~a~e~-------------~ga-~~Vv 73 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLYG------KECYINIADALSASGIRAIRYAHEI-------------EGV-REVF 73 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhhC------CcCCCEEEECCCchhHHHHHHHhhC-------------CCC-CEEE
Confidence 4578998888877766554444432111 1124899999999998888776553 112 5788
Q ss_pred ecCC
Q 047625 94 LNDL 97 (368)
Q Consensus 94 ~nDL 97 (368)
.||+
T Consensus 74 ~nD~ 77 (374)
T TIGR00308 74 ANDI 77 (374)
T ss_pred EEeC
Confidence 8998
No 230
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=26.39 E-value=35 Score=31.20 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhcCCCCCceEEeeecCCCCCCchHHHHHH
Q 047625 34 PLLHESLFDLYSNGFPDCIRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 34 ~~l~~a~~~~~~~~~~~~~~IaD~GCs~G~ns~~~~~~i 72 (368)
.++.++|.+.-. -+++|+|.|+|..|+......
T Consensus 22 avF~~ai~~va~------d~~~DLGaGsGiLs~~Aa~~A 54 (252)
T COG4076 22 AVFTSAIAEVAE------DTFADLGAGSGILSVVAAHAA 54 (252)
T ss_pred HHHHHHHHHHhh------hceeeccCCcchHHHHHHhhh
Confidence 345556554422 578999999999999776553
No 231
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=26.37 E-value=67 Score=27.22 Aligned_cols=74 Identities=23% Similarity=0.440 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCC
Q 047625 188 PSNVHKAYLDQFESDFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPC 267 (368)
Q Consensus 188 ~~~v~~ay~~Q~~~D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps 267 (368)
|..+...|+.||++||...|+.|..+=+. . .....++. |....--.|| -.-+.|
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg~krV---------------~-----AN~vYnEy-----I~Dk~HvHMN-aT~W~s 63 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHGTKRV---------------N-----ANKVYNEY-----IQDKDHVHMN-ATRWTS 63 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTSS-EE---------------E-----HHHHHHHH-----TTSS----GG-GSS-SS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCee---------------c-----hhHHHHHH-----hcCccceeec-ccccch
Confidence 55678999999999999999987533221 0 11122333 2211111333 235678
Q ss_pred HHHHHHHHHhcCceeEeEEE
Q 047625 268 VEEVRQVIEREGSFNIHQLE 287 (368)
Q Consensus 268 ~~E~~~~l~~~GsF~I~~le 287 (368)
.-++...|..+|--+|+..+
T Consensus 64 LT~FvkyLgr~G~~~Vdete 83 (127)
T PF10357_consen 64 LTEFVKYLGREGKCKVDETE 83 (127)
T ss_dssp HHHHHHHHTTTTSEEEEEET
T ss_pred HHHHHHHHhhCCeeEeecCC
Confidence 88999999999866665543
No 232
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=26.19 E-value=35 Score=31.16 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=18.7
Q ss_pred CceEEeeecCCCCCCchHHHHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~i 72 (368)
++-+|+|+||++|.-|+.+...+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l 67 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEAL 67 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTS
T ss_pred CCceEEEeccccccHHHHHHHhh
Confidence 46799999999999888887654
No 233
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=26.14 E-value=1.8e+02 Score=28.20 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=34.7
Q ss_pred CCceEEeeecCCCCCCchHHHHHH------------HHHHHHHhhhcCCCCCcceEEecCCCCCc
Q 047625 49 PDCIRFTDMGCSSGPNAFLPTWQA------------IEALDTICSRLKHKPPILHAFLNDLPGND 101 (368)
Q Consensus 49 ~~~~~IaD~GCs~G~ns~~~~~~i------------i~~l~~~~~~~~~~~p~~~v~~nDLp~ND 101 (368)
..+-.|+++|-|||..|..+++.. +..|.++.... +-..-.||++.|.-.-|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gt-p~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGT-PKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCC-CccceeeEEecccccCC
Confidence 346899999999999999888754 33444443211 11134899998876555
No 234
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=25.54 E-value=34 Score=32.91 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=21.7
Q ss_pred HhHHHHHHHH-HhhhcCCCCCceEEeeecCCCCCCchHH
Q 047625 31 KAKPLLHESL-FDLYSNGFPDCIRFTDMGCSSGPNAFLP 68 (368)
Q Consensus 31 ~~~~~l~~a~-~~~~~~~~~~~~~IaD~GCs~G~ns~~~ 68 (368)
.+.+.+.+++ ..+.. .--||+||||++|--.+..
T Consensus 100 dl~~~l~~e~~~~~~~----~~k~vLELgCg~~Lp~i~~ 134 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSF----SGKRVLELGCGAALPGIFA 134 (282)
T ss_pred HHHHHHHHHhhhheEe----cCceeEecCCcccccchhh
Confidence 4566666665 32211 2368999999999766644
No 235
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=25.48 E-value=92 Score=21.86 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHcCCCchh
Q 047625 234 VFELMGMVLNDMVYEGLIEES 254 (368)
Q Consensus 234 ~~~~l~~al~~l~~eGli~~e 254 (368)
+-.++.++|.+|+.+|.|+++
T Consensus 11 lG~aL~dtLDeli~~~~I~p~ 31 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQ 31 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HH
T ss_pred HHHHHHHHHHHHHHcCCCCHH
Confidence 445789999999999999875
No 236
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=25.05 E-value=71 Score=23.13 Aligned_cols=27 Identities=26% Similarity=0.360 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCce
Q 047625 193 KAYLDQFESDFTSFLNFRWEELKIGGR 219 (368)
Q Consensus 193 ~ay~~Q~~~D~~~FL~~Ra~ELkpGG~ 219 (368)
+.+.+-|+.||..++......||.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 567778888999999999999998764
No 237
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=24.84 E-value=95 Score=29.96 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhccCceEEEEeecC
Q 047625 200 ESDFTSFLNFRWEELKIGGRMILNFIGN 227 (368)
Q Consensus 200 ~~D~~~FL~~Ra~ELkpGG~lvl~~~g~ 227 (368)
.+|+...++.-.+-|+|||.|+++....
T Consensus 214 ~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 214 ERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 4566677888888899999987666533
No 238
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=24.79 E-value=2.6e+02 Score=27.63 Aligned_cols=68 Identities=22% Similarity=0.322 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhccCceEEEEeecCCCccchHHHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHHHhcCce
Q 047625 202 DFTSFLNFRWEELKIGGRMILNFIGNDKHHTGVFELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVIEREGSF 281 (368)
Q Consensus 202 D~~~FL~~Ra~ELkpGG~lvl~~~g~~~e~~~~~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l~~~GsF 281 (368)
..-.+|....+-|||||..+ .+|+-- .-++ + ..|. -+.+..-.+.+++..+.+.-| |
T Consensus 274 NileYi~tI~~iLk~GGvWi--NlGPLl---YHF~-------d--~~g~--------~~~~siEls~edl~~v~~~~G-F 330 (369)
T KOG2798|consen 274 NILEYIDTIYKILKPGGVWI--NLGPLL---YHFE-------D--THGV--------ENEMSIELSLEDLKRVASHRG-F 330 (369)
T ss_pred HHHHHHHHHHHhccCCcEEE--ecccee---eecc-------C--CCCC--------cccccccccHHHHHHHHHhcC-c
Confidence 44558999999999999754 444421 0010 0 0121 244667788999999999889 9
Q ss_pred eEeEEEEEeec
Q 047625 282 NIHQLETSHIS 292 (368)
Q Consensus 282 ~I~~le~~~~~ 292 (368)
++++-+.++..
T Consensus 331 ~~~ke~~Idt~ 341 (369)
T KOG2798|consen 331 EVEKERGIDTT 341 (369)
T ss_pred EEEEeeeeecc
Confidence 99988866543
No 239
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=24.02 E-value=1e+02 Score=28.92 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.3
Q ss_pred HHHHHHHHHhccCceEEEEeecCC
Q 047625 205 SFLNFRWEELKIGGRMILNFIGND 228 (368)
Q Consensus 205 ~FL~~Ra~ELkpGG~lvl~~~g~~ 228 (368)
.|++..++.|+|||.+++......
T Consensus 172 ef~~~~~~~L~~~Gv~v~~~~~~~ 195 (246)
T PF01564_consen 172 EFYQLCKRRLKPDGVLVLQAGSPF 195 (246)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEETT
T ss_pred HHHHHHHhhcCCCcEEEEEccCcc
Confidence 388999999999999999984443
No 240
>PF14904 FAM86: Family of unknown function
Probab=23.88 E-value=86 Score=25.40 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=24.4
Q ss_pred HHHHHHHHhhHHHhh--hChHHHHHHHHHHHHH
Q 047625 316 ANNIRAVSESLLANH--FGSAIMDDLFHRFTIK 346 (368)
Q Consensus 316 ~~~ira~~~p~l~~~--~~~~i~delf~r~~~~ 346 (368)
.++.|+|...++..+ .+.|..|++|+.|++.
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 356788888888744 4678999999999874
No 241
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=23.40 E-value=64 Score=20.10 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=14.4
Q ss_pred HHHHHHHHcCCCchhhhc
Q 047625 240 MVLNDMVYEGLIEESKLE 257 (368)
Q Consensus 240 ~al~~l~~eGli~~e~~d 257 (368)
..|++|.+.|.|++++++
T Consensus 6 ~~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHHcCCCCHHHHH
Confidence 457888899999998764
No 242
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=22.44 E-value=2.2e+02 Score=27.30 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHhhhcCCCCCceEEeeecCC--CCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecC
Q 047625 26 REAILKAKPLLHESLFDLYSNGFPDCIRFTDMGCS--SGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLND 96 (368)
Q Consensus 26 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~IaD~GCs--~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nD 96 (368)
+.++..-...|..+++-+... .+.-.++||||| |-.|+=.+.+.+ .|+-.|++.|
T Consensus 46 ~~~ar~nR~Fl~RaVr~la~~--~GIrQFLDlGsGlPT~~nvHevAq~~--------------~P~aRVVYVD 102 (267)
T PF04672_consen 46 REAARANRAFLRRAVRYLAEE--AGIRQFLDLGSGLPTAGNVHEVAQRV--------------APDARVVYVD 102 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--T---EEEEET--S--SS-HHHHHHHH---------------TT-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCcceEEEcccCCCCCCCHhHHHHhh--------------CCCceEEEEC
No 243
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=22.37 E-value=36 Score=31.12 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHhcCceeEeEEEEE
Q 047625 266 PCVEEVRQVIEREGSFNIHQLETS 289 (368)
Q Consensus 266 ps~~E~~~~l~~~GsF~I~~le~~ 289 (368)
....+++.+|.+.| |.|..=+++
T Consensus 103 ~~~~~LR~~L~~~g-f~I~~E~lv 125 (205)
T PF04816_consen 103 THAYELRRWLYENG-FEIIDEDLV 125 (205)
T ss_dssp S-HHHHHHHHHHTT-EEEEEEEEE
T ss_pred CChHHHHHHHHHCC-CEEEEeEEE
Confidence 46789999999999 999876654
No 244
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=22.15 E-value=7.7e+02 Score=24.35 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=69.4
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCchhhhhhcChhhHHHhhhhccCCCCCceee
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDLPGNDFNTLSKSLPSFYERLKTEKRNDDFGSCFI 130 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDLp~NDfn~lf~~l~~~~~~~~~~~~~~~~~~~f~ 130 (368)
..+|+|+=.|-|+=|.++.+.. ......|+=+|.-.+=...|...+. ++ | ..++=+
T Consensus 157 ge~VlD~cAAPGGKTthla~~~-------------~~~~~iV~A~D~~~~Rl~~l~~nl~----Rl----G---~~nv~~ 212 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELM-------------ENEGAIVVAVDVSPKRLKRLRENLK----RL----G---VRNVIV 212 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhc-------------CCCCceEEEEcCCHHHHHHHHHHHH----Hc----C---CCceEE
Confidence 3999999999999998886554 1122557888884322222332221 11 1 123333
Q ss_pred eecCCCcccccCCCC-ccceEE---cccccccccCCcccccccCCCCCcCcccEEEcCCCCCHHHHHHHHHHHHHHHHHH
Q 047625 131 GVAPGSLYGRLFPPC-FLNLVY---SSFCLNWLSQVPKELVSECGIPLLNKRDVCVAKTCSPSNVHKAYLDQFESDFTSF 206 (368)
Q Consensus 131 ~~vp~SFy~~l~P~~-sid~~~---S~~alhWls~~P~~~~~~~~~~~~nk~~i~~~~~s~~~~v~~ay~~Q~~~D~~~F 206 (368)
.-..++.+....|.. .+|-|. .+|+.-=+.+-|.. .|++ + +..+.+.-.-| .++
T Consensus 213 ~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~--------~~~~-------~--~~~i~~l~~lQ-----~~i 270 (355)
T COG0144 213 VNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDV--------KWRR-------T--PEDIAELAKLQ-----KEI 270 (355)
T ss_pred EecccccccccccccCcCcEEEECCCCCCCcccccCccc--------cccC-------C--HHHHHHHHHHH-----HHH
Confidence 333334343344433 366553 12222222222321 1121 1 22222221112 347
Q ss_pred HHHHHHHhccCceEEEEeecCCC
Q 047625 207 LNFRWEELKIGGRMILNFIGNDK 229 (368)
Q Consensus 207 L~~Ra~ELkpGG~lvl~~~g~~~ 229 (368)
|.+=.+-|||||+||-+++....
T Consensus 271 L~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 271 LAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred HHHHHHhcCCCCEEEEEccCCch
Confidence 99999999999999999987655
No 245
>PLN02476 O-methyltransferase
Probab=21.90 E-value=99 Score=29.73 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=18.9
Q ss_pred CceEEeeecCCCCCCchHHHHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~i 72 (368)
++-+|+|+||++|.-|+.+...+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al 140 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVL 140 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhC
Confidence 46799999999999988776543
No 246
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.50 E-value=1.2e+02 Score=26.64 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCCchhhhccCCcccccCCHHHHHHHH----HhcCceeEeEEEEEeec
Q 047625 235 FELMGMVLNDMVYEGLIEESKLESFNYPIYYPCVEEVRQVI----EREGSFNIHQLETSHIS 292 (368)
Q Consensus 235 ~~~l~~al~~l~~eGli~~e~~d~f~~P~y~ps~~E~~~~l----~~~GsF~I~~le~~~~~ 292 (368)
.+.+..+|.+|..+|+++.-.=..-.+-+|.++++|+..+| .+.| +.-.-..+++..
T Consensus 68 ~~~i~~Il~~l~k~g~~e~~Dk~rt~f~I~Wrs~dewgnmIyqW~~dsg-~~nti~TlYElt 128 (174)
T KOG4068|consen 68 QEFIDEILEELEKKGLAEPTDKRRTRFFIYWRSLDEWGNMIYQWVSDSG-QLNTICTLYELT 128 (174)
T ss_pred HHHHHHHHHHHHHccCCcccccCceEEEEEEcCHHHHHHHHHHHHHHcC-cCCCceEEEEec
Confidence 45788899999999998763333445677889999976554 6677 443444555543
No 247
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=21.47 E-value=1.9e+02 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=19.8
Q ss_pred HHHHHHHHHHh----ccCceEEEEeecC
Q 047625 204 TSFLNFRWEEL----KIGGRMILNFIGN 227 (368)
Q Consensus 204 ~~FL~~Ra~EL----kpGG~lvl~~~g~ 227 (368)
...|+.-++-+ +|||+||-+++.-
T Consensus 195 ~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 195 REILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp HHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred HHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 34688888888 9999999999644
No 248
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=20.78 E-value=2e+02 Score=26.21 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=22.9
Q ss_pred ceEEeeecCCCCCCchHHHHHHHHHHHHHhhhcCCCCCcceEEecCC
Q 047625 51 CIRFTDMGCSSGPNAFLPTWQAIEALDTICSRLKHKPPILHAFLNDL 97 (368)
Q Consensus 51 ~~~IaD~GCs~G~ns~~~~~~ii~~l~~~~~~~~~~~p~~~v~~nDL 97 (368)
..+|+|.-||.|+.|+.+...- .. -.|+-+|+
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~--------------~~-~~V~A~d~ 133 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHG--------------KA-KRVYAVDL 133 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT---------------S-SEEEEEES
T ss_pred ceEEEEccCCccHHHHHHhhhc--------------Cc-cEEEEecC
Confidence 4799999999999999875421 12 56888888
No 249
>PRK05568 flavodoxin; Provisional
Probab=20.67 E-value=2.3e+02 Score=23.39 Aligned_cols=24 Identities=13% Similarity=-0.123 Sum_probs=17.3
Q ss_pred EeeecCCCCCCchHHHHHHHHHHHH
Q 047625 54 FTDMGCSSGPNAFLPTWQAIEALDT 78 (368)
Q Consensus 54 IaD~GCs~G~ns~~~~~~ii~~l~~ 78 (368)
++=|++.+| ||..+++.|.+.+++
T Consensus 5 ~IvY~S~~G-nT~~~a~~i~~~~~~ 28 (142)
T PRK05568 5 NIIYWSGTG-NTEAMANLIAEGAKE 28 (142)
T ss_pred EEEEECCCc-hHHHHHHHHHHHHHH
Confidence 344677666 888888888877654
No 250
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=20.21 E-value=44 Score=21.51 Aligned_cols=15 Identities=40% Similarity=1.035 Sum_probs=7.5
Q ss_pred ccccCCHHHHHHHHH
Q 047625 262 PIYYPCVEEVRQVIE 276 (368)
Q Consensus 262 P~y~ps~~E~~~~l~ 276 (368)
|.++||.+|++..+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 667888888766553
No 251
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=20.13 E-value=1.2e+02 Score=27.83 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=18.7
Q ss_pred CceEEeeecCCCCCCchHHHHHH
Q 047625 50 DCIRFTDMGCSSGPNAFLPTWQA 72 (368)
Q Consensus 50 ~~~~IaD~GCs~G~ns~~~~~~i 72 (368)
.-.+|+||||+-|.=|..+.+.+
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~ 67 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKL 67 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHh
Confidence 45899999999999887766554
Done!