Your job contains 1 sequence.
>047627
METSRTHPVSETQLNNLSLSFENLQVNDPSYSSFNEIHPSPPVPLYPQSTWAVPSLSGRS
TVPNLSGTSNPQYETITSSNFQTPLGFQANPFQHCANSGILLLAQDEQGSQYLQEKLTSG
DSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASV
DKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKN
DFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVV
QHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRITVNYIVEEFLLNSDQI
FRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRFGYGKHVYNFIKDCDL
QN
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047627
(422 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 433 1.2e-43 2
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 361 4.3e-34 2
TAIR|locus:2144711 - symbol:PUM21 "pumilio 21" species:37... 370 4.6e-34 1
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 353 3.1e-32 1
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 350 1.5e-31 1
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 349 4.1e-31 1
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 324 2.2e-28 1
TAIR|locus:2164165 - symbol:PUM18 "pumilio 18" species:37... 314 3.9e-28 1
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 309 1.3e-27 1
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 301 5.7e-25 1
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 285 6.9e-23 1
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 280 1.9e-22 1
TAIR|locus:2168529 - symbol:PUM16 "pumilio 16" species:37... 258 7.3e-22 1
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 275 4.0e-21 1
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 273 9.2e-21 1
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 271 1.2e-20 1
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 271 1.6e-20 1
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 268 2.1e-20 1
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 265 5.5e-20 2
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 265 5.5e-20 2
CGD|CAL0004399 - symbol:orf19.5381 species:5476 "Candida ... 264 6.4e-20 1
TAIR|locus:2167786 - symbol:PUM14 "pumilio 14" species:37... 260 7.1e-20 1
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 260 3.1e-19 1
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 259 3.6e-19 1
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 259 3.9e-19 1
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 259 4.0e-19 1
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 253 9.2e-19 1
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 255 1.3e-18 1
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 252 1.8e-18 1
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 250 3.3e-18 1
TAIR|locus:2167771 - symbol:PUM13 "pumilio 13" species:37... 245 4.2e-18 1
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 250 4.2e-18 1
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 252 4.4e-18 2
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 250 5.0e-18 1
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 250 5.0e-18 1
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 250 5.2e-18 1
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 251 5.4e-18 1
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 248 8.1e-18 1
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 248 8.8e-18 1
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 246 1.4e-17 1
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 241 3.8e-17 1
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 232 1.1e-16 2
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 236 1.4e-16 1
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 234 1.5e-16 1
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 236 1.8e-16 1
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 236 1.8e-16 1
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 236 1.9e-16 1
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 237 2.2e-16 2
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 234 3.2e-16 1
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 235 4.3e-16 2
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 227 4.5e-16 2
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 231 5.2e-16 1
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 228 9.4e-16 2
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 217 1.4e-14 1
WB|WBGene00004244 - symbol:puf-8 species:6239 "Caenorhabd... 206 1.2e-13 1
ZFIN|ZDB-GENE-081031-76 - symbol:pum2 "pumilio homolog 2 ... 135 1.2e-13 3
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 207 1.8e-13 1
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 188 1.0e-12 2
WB|WBGene00004245 - symbol:puf-9 species:6239 "Caenorhabd... 197 2.0e-12 1
CGD|CAL0000998 - symbol:PUF3 species:5476 "Candida albica... 180 4.4e-12 3
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 192 1.1e-11 1
TAIR|locus:2035312 - symbol:PUM22 "pumilio 22" species:37... 163 3.3e-09 1
POMBASE|SPAC4G9.05 - symbol:mpf1 "meiotic PUF family prot... 160 1.8e-08 1
POMBASE|SPCC1682.08c - symbol:SPCC1682.08c "RNA-binding p... 148 5.1e-07 1
ASPGD|ASPL0000000865 - symbol:AN6587 species:162425 "Emer... 154 5.4e-07 2
GENEDB_PFALCIPARUM|PFD0825c - symbol:PFD0825c "RNA-bindin... 144 8.8e-07 1
UNIPROTKB|Q8I1R7 - symbol:PFD0825c "RNA-binding protein o... 144 8.8e-07 1
WB|WBGene00022257 - symbol:puf-11 species:6239 "Caenorhab... 142 1.4e-06 1
WB|WBGene00004239 - symbol:puf-3 species:6239 "Caenorhabd... 139 3.0e-06 1
UNIPROTKB|Q9U2G4 - symbol:puf-3 "Protein PUF-3" species:6... 139 3.0e-06 1
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 139 6.6e-06 1
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 123 3.1e-05 1
WB|WBGene00004241 - symbol:puf-5 species:6239 "Caenorhabd... 127 7.3e-05 1
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 433 (157.5 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 102/319 (31%), Positives = 180/319 (56%)
Query: 96 ANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIET 155
A I LA+D+ G ++LQ + D ++ +FN + ++ +++ + + ++ K +E
Sbjct: 278 ARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEV 337
Query: 156 CNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRL 215
CNEDQ ++I IT + L ++ S D G+ +++K+++ A R + +++ ALK
Sbjct: 338 CNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVET-AKREEEISIIISALKHGIVH 396
Query: 216 LMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPR 275
L+ G+ VV +CL+ + + K F+++AA+ HC+ LA GC + + +G +
Sbjct: 397 LIKNVNGNHVVQRCLQYLLPYCGK--FLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQ 454
Query: 276 RKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFV 335
++ ++ I+ NA LS++ GNYV+Q+V EL+ + I L G+Y +LS+ KC S V
Sbjct: 455 KQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNV 514
Query: 336 VQNCLKYRITVNY--IVEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
V+ CLK + I+ E L+N ++ +V D YGNYVIQ AL ++ + N +H LV
Sbjct: 515 VEKCLKLADDKHRARIIRE-LINYGRLDQVMLDPYGNYVIQAALKQS-KGN---VHALLV 569
Query: 394 TKLQQNLDSLRFG-YGKHV 411
++ N+ SLR YGK V
Sbjct: 570 DAIKLNISSLRTNPYGKKV 588
Score = 44 (20.5 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 11 ETQLN-NLSLSFENLQVNDPSYSSFNE 36
+ QLN +L++S NL + Y+S E
Sbjct: 251 QNQLNEDLTMSLNNLSLQPQKYNSIAE 277
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 361 (132.1 bits), Expect = 4.3e-34, Sum P(2) = 4.3e-34
Identities = 103/373 (27%), Positives = 188/373 (50%)
Query: 54 PSLSGRSTVPNLSGTSNPQYETITSSNFQTPLGFQANPFQHCANS---GILLLAQDEQGS 110
P + + + LS TS P + ITS + + AN + I L +D+ G
Sbjct: 668 PMMQNQQQMAQLSITSPPITDPITS-DISKKIDLIANKTYTSIDQVMGSIYPLCRDQHGC 726
Query: 111 QYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITS 170
++LQ+KL D + + +F V ++ +++ + + ++ K +E CN+ Q L I ++ +
Sbjct: 727 RFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFGNYLCQKLLEHCNDRQRLTIIEKVGT 786
Query: 171 QDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCL 230
V+ S++ G+ +++K+++ + P + L+ ++LK L+ G+ V+ +CL
Sbjct: 787 D---IVRISMNMHGTRAVQKMIEYLTT-PEQIQLIKRSLKDSVVPLIQDLNGNHVIQKCL 842
Query: 231 EQIYHHNNKNDFIYQAALEH--CLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAA 288
++ +N+ FIY A C+ +A H GC + ID ++ Q++ + N+
Sbjct: 843 NKLSPQDNQ--FIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQKLQLIQEVIANSL 900
Query: 289 SLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYR--ITV 346
L ++ GNYVVQ+VL+L L + GH L+ K S VV+ CL IT
Sbjct: 901 VLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILATQKFSSNVVEKCLHVADAITR 960
Query: 347 NYIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLR-F 405
Y+++E +++ D + + D Y NYVIQT+L + P H H +LV ++ +L L+
Sbjct: 961 GYLIQE-VIDYDNLLHLLQDPYANYVIQTSLTIS-EP---HQHTKLVEAIRPHLPLLKNT 1015
Query: 406 GYGKHVYN-FIKD 417
YGK + N IK+
Sbjct: 1016 PYGKRIQNKIIKE 1028
Score = 48 (22.0 bits), Expect = 4.3e-34, Sum P(2) = 4.3e-34
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 15 NNLSLSFENLQVNDPSYSSFNEIHPS-PPVPLYPQSTWAVPSLSGRSTVPN 64
NN S + N N S ++ N +HP+ P P PQS SG ST P+
Sbjct: 437 NNNSNNNGNGNSNSNSSNNNNTVHPARTPTP--PQS-------SGNSTSPS 478
Score = 44 (20.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 4 SRTHPVSETQLNNLSLSFENLQVNDPSYSSFNEIHPSPPVPLYPQS 49
S + + E QL N N+ N+ + +S N + PP P PQS
Sbjct: 336 SSLNQIFEPQLRN-----SNINSNNNNNNSNNNNNKQPPQP--PQS 374
Score = 37 (18.1 bits), Expect = 6.1e-33, Sum P(2) = 6.1e-33
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 5 RTHPVSETQLNNLSLSFENLQVNDPSYSSFNE 36
R +P+ + Q LS + + DP S ++
Sbjct: 665 RNNPMMQNQQQMAQLSITSPPITDPITSDISK 696
>TAIR|locus:2144711 [details] [associations]
symbol:PUM21 "pumilio 21" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB020752
EMBL:AL353994 eggNOG:COG5099 IPI:IPI00537619 PIR:T49937
RefSeq:NP_196523.1 UniGene:At.54788 ProteinModelPortal:Q9LXC5
SMR:Q9LXC5 EnsemblPlants:AT5G09610.1 GeneID:830820
KEGG:ath:AT5G09610 TAIR:At5g09610 HOGENOM:HOG000153154
InParanoid:Q9LXC5 OMA:HQEPGES PhylomeDB:Q9LXC5
ProtClustDB:CLSN2916885 Genevestigator:Q9LXC5 Uniprot:Q9LXC5
Length = 517
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 121/435 (27%), Positives = 210/435 (48%)
Query: 7 HPVSETQLNNLSLSFENLQVNDPSYS---SFNEIHPSPPV-------PLYPQSTWAVPSL 56
+P T NNL L + N +P S + N +P+PP+ LY P
Sbjct: 90 NPPLVTAFNNLEL-YANYNHQEPGESGTTNINNNNPNPPLLTAFDNLRLYANYNHQEPGE 148
Query: 57 SGRSTVPNLSGTSNPQYETITSSNFQTPLGFQANPFQHCANSGILLLAQDEQGSQYLQEK 116
S + PNL+ N + I++++F P PF + L D+ S+Y +
Sbjct: 149 SSNNNYPNLN-VYNVGH--ISAASFNAP------PFTPSS-----LTQPDDSSSRYSGKP 194
Query: 117 LTSGDSRFL----DKVFNVVSEFTFQIICNQYARFV-FGKFIETCN-------EDQLLRI 164
F+ DK N +S + C Q RF F K+++ + E L +I
Sbjct: 195 FPPPPLSFVSPGVDKDRNWLSSLLDMMTCAQ--RFTEFQKYLQDLDTYPTAERESHLFKI 252
Query: 165 TLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLD-LVMKALKRLFRLLMMTKPGS 223
+T+ ++F+ + +++GS ++R L + R P LD L+ A+ F LLM K G
Sbjct: 253 GSALTTTKRIFLHLATNQYGSQALRILFR----RSPSLDHLLFCAVDTNFFLLMSDKYGR 308
Query: 224 SVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLI 283
+++ + + K + +Y+ E+ L+LA E GC+ +NN + E++G R I +
Sbjct: 309 GLIIPAIRAV--DKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRGIYRDLIFECV 366
Query: 284 SVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYR 343
+ NA LS + G +VVQ++L L++P I LRG + L++ + GS+VV+ CLK
Sbjct: 367 ANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKCLKSD 426
Query: 344 ITVNYIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLH-LHQRLVTKLQQNLDS 402
+ ++EEF N+ + R+ DK+GN+V+Q+AL M+ + L + V KL+ +
Sbjct: 427 FARDQVLEEFRGNAKEWVRMTTDKFGNFVVQSAL-RVMKEKEMRPLLREFVEKLRPHFGK 485
Query: 403 LRFGYGKHVYNFIKD 417
+ G G++ I++
Sbjct: 486 MEIGRGRNTLRVIQE 500
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 353 (129.3 bits), Expect = 3.1e-32, P = 3.1e-32
Identities = 85/289 (29%), Positives = 156/289 (53%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
+ +A+D+ G ++LQ G + +F+ V +++ + + ++ K ++ CNE+
Sbjct: 203 VYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQKLLDVCNEE 262
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q +I L +TS+ ++ S++ +G+ +++L++++ R + LV AL+ F L+
Sbjct: 263 QRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQI-SLVKSALRPGFLNLIRD 321
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
G+ V+ +CL+ + N+FI++ A + C+ +A H GC + I G +R+++
Sbjct: 322 LNGNHVIQRCLQCL--STEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQREKL 379
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
+ IS N+ L+++ GNY VQ VLEL D I + L+GHY++LS+ K S +V+ C
Sbjct: 380 VTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERC 439
Query: 340 LKYRITVN-YIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLH 387
L + IV E L++ + D Y N+VIQ AL T SLH
Sbjct: 440 LTHCPESRPQIVRE-LISVPHFDILIQDPYANFVIQAALAVTK--GSLH 485
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 350 (128.3 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 89/286 (31%), Positives = 159/286 (55%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDK--VFNVVSEFTFQIICNQYARFVFGKFIETCN 157
+ L+A+D+ G + LQ+ + G+ F+D +F V ++ + + ++ K IE CN
Sbjct: 246 VYLMAKDQLGCRLLQKFVDEGN--FVDVMIIFKEVINNVIELGTDPFGNYLIQKLIEVCN 303
Query: 158 EDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLM 217
E+Q +I +++TS+ L V+ S++ +G+ ++KL++ V + + LV AL F L
Sbjct: 304 EEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQI-SLVKSALVPGFLSLF 362
Query: 218 MTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRK 277
G+ V+L CL+ + N N FI +AA + C+ +A GC + + G + +
Sbjct: 363 RELNGNHVILNCLK--FFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHE 420
Query: 278 QILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQ 337
+++ IS N+ L+++ GNY+VQ+++E + + + F LRG+Y+ L+ K GS VV+
Sbjct: 421 KLVDEISRNSLLLAQDPFGNYLVQYIIEKKVGGV--NVLFELRGNYVKLATQKFGSHVVE 478
Query: 338 NCLKYRI-TVNYIVEEFL--LNSDQIFRVACDKYGNYVIQTALIET 380
CL+Y + + IV E + LN + + D Y NYVIQ AL +T
Sbjct: 479 KCLRYYPESRSQIVNELVSVLNFGYLLQ---DPYANYVIQCALSKT 521
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 349 (127.9 bits), Expect = 4.1e-31, P = 4.1e-31
Identities = 108/389 (27%), Positives = 191/389 (49%)
Query: 43 VPLYPQSTWAVPSLSGRSTVPNLSGTS---NPQYETITSSNFQTPLGFQANPFQHCANS- 98
+PL+ Q T VP +S + + P S S N + SN + + NP + C S
Sbjct: 271 LPLFCQRT-QVPMVS-KCSEPFSSDESFFMNGKSIDHQRSNTRALMSNNGNPTEICHPSL 328
Query: 99 -------G-ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFG 150
G + L+A+D+ G ++LQ G S +FN V +++ + + ++
Sbjct: 329 PNMCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQ 388
Query: 151 KFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALK 210
K ++ C E+Q +I L T + ++ S++ +G+ +++L++ + + + LV AL+
Sbjct: 389 KLLDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQI-SLVKLALR 447
Query: 211 RLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDE 270
F L+ G+ V+ +CL+ + +NK FI+ AA + C +A H GC + I
Sbjct: 448 PGFLDLIKDLNGNHVIQRCLQCLSTEDNK--FIFDAATKFCTEIATHRHGCCVLQKCIAY 505
Query: 271 MKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTK 330
+R++++ IS N+ L+++ GNY VQ V+EL P + + L+GHY+ LS+ K
Sbjct: 506 SMRQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQK 565
Query: 331 CGSFVVQNCLKYRITVN-YIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLH 389
S +V+ CL + IV E L++ ++ D Y N+VIQ AL T P LH
Sbjct: 566 FSSHMVERCLMHCPESRPQIVRE-LVSVPHFDQLLQDPYANFVIQAALAATKGP----LH 620
Query: 390 QRLVTKLQQNLDSLRFGYGKHVY--NFIK 416
LV ++ + Y K ++ N +K
Sbjct: 621 ASLVEVIRPHSILRNNPYCKRIFSRNLLK 649
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 324 (119.1 bits), Expect = 2.2e-28, P = 2.2e-28
Identities = 101/380 (26%), Positives = 182/380 (47%)
Query: 34 FNEIHP--SPPVPL---YPQST-WAVPSLSGRSTVPNLSGTSNPQYETITSSNFQTPLG- 86
F I P +PP+P+ Y QST +A + G + P + L
Sbjct: 169 FYGIQPFVAPPLPVNGQYNQSTPFAANAYYGNGNYRLVESQPKPVGSRRHADGDSAQLSR 228
Query: 87 FQANPFQHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYAR 146
F +P ++ N I L +D+ G +YLQ KL + L +F +++ + +
Sbjct: 229 FNNHPIEYYRNE-IYGLCKDQHGCRYLQRKLEERNDDQLQMIFAETHSHVIELMTDPFGN 287
Query: 147 FVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVM 206
++ K +E N++Q R L + QL V+ ++++ G+ +++K+++ ++ V+
Sbjct: 288 YLCQKLLEYSNDEQ--RTVLVNKAAPQL-VKIALNQHGTRALQKMIEFISTEEQT-QTVI 343
Query: 207 KALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNN 266
ALK L+ G+ V+ +CL ++ K+ FIY A C+ + H GC +
Sbjct: 344 DALKDHVVELVQDLNGNHVIQKCLNRLTAE--KSQFIYDAVGAQCVTVGTHRHGCCVLQR 401
Query: 267 FIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDL 326
ID G +R +++ I+ NA +L ++ GNYVVQ++L+L + E +C L
Sbjct: 402 CIDHASGAQRARLIEQITENAFALVQDPFGNYVVQYILDLAEARFTEPLCREFLSRIPKL 461
Query: 327 SLTKCGSFVVQNCLKYRITV--NYIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPN 384
S K S V++ CL+ ++EE +L D++ ++ D Y NYV+QTA+ + P
Sbjct: 462 SKHKFSSNVIEKCLRTADEEMRRQMIEE-MLAGDELEKMLRDSYANYVVQTAM-DYADPA 519
Query: 385 SLHLHQRLVTKLQQNLDSLR 404
+ R+V ++ L SLR
Sbjct: 520 T---RARIVKYIEPILPSLR 536
>TAIR|locus:2164165 [details] [associations]
symbol:PUM18 "pumilio 18" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB019231
eggNOG:COG5099 HOGENOM:HOG000152208 EMBL:DQ056729 IPI:IPI00533181
RefSeq:NP_200819.1 UniGene:At.55636 ProteinModelPortal:Q9LVG3
SMR:Q9LVG3 EnsemblPlants:AT5G60110.1 GeneID:836133
KEGG:ath:AT5G60110 TAIR:At5g60110 InParanoid:Q9LVG3 OMA:EMISNSD
PhylomeDB:Q9LVG3 ProtClustDB:CLSN2916299 Genevestigator:Q9LVG3
Uniprot:Q9LVG3
Length = 327
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 86/270 (31%), Positives = 142/270 (52%)
Query: 149 FGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVM-K 207
F + I ++ +L R+ +TS F+ KFGS ++KL+ + +D
Sbjct: 58 FKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL----GKSDDVDAFFCA 113
Query: 208 ALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNF 267
A+ R F + K S V ++ + ++ K +Y+ L H L LAC + GCI +N+
Sbjct: 114 AILRRFLHITTDKYASYVTIRAMV-VFDKVMKKA-LYERILYHALDLACDQHGCIALNDI 171
Query: 268 IDEMKGPR-RKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDL 326
I + P R Q+L L++ NA LS + SGN+VVQHVL L D I I +L G I+L
Sbjct: 172 ITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIEL 231
Query: 327 SLTKCGSFVVQNCLKYRITVNYIVEEFL-LNSDQIFRVACDKYGNYVIQTALIETMRPNS 385
S K GS++V+ L+ ++ +V E L + D++ R+A +++GN+V+ AL T + +
Sbjct: 232 SFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKALRFT-KMSR 290
Query: 386 LHLHQRLVTKLQQNLDSLRFGYGKHVYNFI 415
+ L LV KL + LR +G ++ N +
Sbjct: 291 MDLFWGLVQKLMPFIRLLRRSHGSNIANIL 320
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 86/270 (31%), Positives = 140/270 (51%)
Query: 149 FGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVM-K 207
F + I ++ +L R+ +TS F+ KFGS ++KL+ + +D
Sbjct: 58 FKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL----GKSDDVDAFFCA 113
Query: 208 ALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNF 267
A+ R F + K S V ++ + ++ K +Y+ L H L LAC + GCI +N+
Sbjct: 114 AILRRFLHITTDKYASYVTIRAMV-VFDKVMKKA-LYERILYHALDLACDQHGCIALNDI 171
Query: 268 IDEMKGPR-RKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDL 326
I + P R Q+L L+ NA LS + SGN+VVQHVL L D I I +L G I+L
Sbjct: 172 ITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIEL 231
Query: 327 SLTKCGSFVVQNCLKYRITVNYIVEEFL-LNSDQIFRVACDKYGNYVIQTALIETMRPNS 385
S K GS++V+ L+ ++ +V E L + D++ R+A +++GN+V+ AL T +
Sbjct: 232 SFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKALRFT-KEMR 290
Query: 386 LHLHQRLVTKLQQNLDSLRFGYGKHVYNFI 415
+ L LV KL + LR +G ++ N +
Sbjct: 291 MDLFWGLVQKLMPFIHLLRRSHGNNIANIL 320
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 301 (111.0 bits), Expect = 5.7e-25, P = 5.7e-25
Identities = 82/298 (27%), Positives = 153/298 (51%)
Query: 102 LLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQL 161
L+A+D+ G + LQ+ + G + + + ++ + + ++ K + +E+Q
Sbjct: 256 LMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQKLFDVSDEEQR 315
Query: 162 LRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKP 221
I +TS + ++ ++ +G+ ++K+++ V + + LV LK F L+
Sbjct: 316 TLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIA-LVKSGLKPGFLALVKDLN 374
Query: 222 GSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILY 281
G+ V+ CL+ + N N+F+ +AA ++C +A H GC + I G +R++++
Sbjct: 375 GNHVIQSCLQTL--GPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQRERLVA 432
Query: 282 LISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCL- 340
IS N+ LS++ GNYVVQ++++ + + + F R HY +L+ K S V++ CL
Sbjct: 433 EISRNSLHLSQDPFGNYVVQYLIDQQVSAVKLLVQF--RMHYAELATQKFSSHVIEKCLR 490
Query: 341 KYRITVNYIVEEFLL--NSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKL 396
KY + IV E L N + + + D Y NYVIQTAL T P + +LV K+
Sbjct: 491 KYPESRAEIVRELLCVPNFEYLLQ---DPYANYVIQTALSVTKGP----VRAKLVAKV 541
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 285 (105.4 bits), Expect = 6.9e-23, P = 6.9e-23
Identities = 86/303 (28%), Positives = 155/303 (51%)
Query: 102 LLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQL 161
L+A+D+ G + LQ+ + G +F + + ++ + ++ K + +E+Q
Sbjct: 220 LMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQR 279
Query: 162 LRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKP 221
I +TS+ + ++ ++ G+ I+K++K V + + LV AL+ F +L+
Sbjct: 280 TMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIA-LVKSALEPGFLVLVNDSN 338
Query: 222 GSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILY 281
G V+ CLE + ++NK F+ +AA E+C LA H+ GC + + G + ++++
Sbjct: 339 GYHVLQSCLEFLVPNDNK--FVVEAATEYCAQLATHQYGCYVLQCSLINTVGLQHERLVA 396
Query: 282 LISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCL- 340
IS ++ LS++ GNYVVQ +++ + + + R H I+L+ K S V++ CL
Sbjct: 397 EISRDSLRLSQDPFGNYVVQCLIDQQVSSV--NLLLPFRTHCIELATQKFSSHVIEKCLR 454
Query: 341 KYRITVNYIVEEFLL--NSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVT--KL 396
KY + IV E L N +Q+ + D Y NYVIQTAL T L +++ KL
Sbjct: 455 KYPESRAEIVRELLSYPNFEQLLQ---DPYANYVIQTALSVTKGAVRARLVEKVKRFGKL 511
Query: 397 QQN 399
Q N
Sbjct: 512 QSN 514
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 280 (103.6 bits), Expect = 1.9e-22, P = 1.9e-22
Identities = 93/337 (27%), Positives = 156/337 (46%)
Query: 57 SGRSTVPNLSGTSNPQYETITSSNFQ--TPLGFQANPFQHCANSGILLLAQDEQGSQYLQ 114
SG TV G S S N + L A + + + +L A+D S LQ
Sbjct: 110 SGGRTVSGSRGISRSTDFVGASQNLRPFVSLDDDAYGYMYGIRNTLLSRAKDGIESHMLQ 169
Query: 115 EKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQL 174
+ G +DK+F+ + +++ + Y VF K +E C ++Q+ R+ L I ++
Sbjct: 170 YVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITRV-LDIVLEEPF 228
Query: 175 -FVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQI 233
FV+ V G+ +I+ LM+++ + + M+ L + LL V+L C Q
Sbjct: 229 EFVRLCVHTHGTHAIQGLMRSLCSEEQI-SRFMETLCYVSLLLTKDVIAHRVILFCFNQF 287
Query: 234 YHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILY-LISVNAASLSR 292
+ + ++ + +++C +A + GC + I + R ++ +IS+ A L
Sbjct: 288 SPSHTR--YLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISI-AVRLCG 344
Query: 293 NFSG----------NYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY 342
N G NYVVQ++L L+D + + L G+Y+ LS K GS VVQ CL+
Sbjct: 345 NCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLES 404
Query: 343 R-ITVNYIVEEFLLNSDQIFRVACDKYGNYVIQTALI 378
R + I+ E L + D + D YG+YVIQTA I
Sbjct: 405 REFSSRRIIAELLSDIDSLL---VDPYGDYVIQTAWI 438
>TAIR|locus:2168529 [details] [associations]
symbol:PUM16 "pumilio 16" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB016890 IPI:IPI00533013 RefSeq:NP_200736.1 UniGene:At.65693
ProteinModelPortal:Q9FIE9 PRIDE:Q9FIE9 EnsemblPlants:AT5G59280.1
GeneID:836046 KEGG:ath:AT5G59280 TAIR:At5g59280
HOGENOM:HOG000152208 OMA:CTRNIAD Genevestigator:Q9FIE9
Uniprot:Q9FIE9
Length = 332
Score = 258 (95.9 bits), Expect = 7.3e-22, P = 7.3e-22
Identities = 74/248 (29%), Positives = 131/248 (52%)
Query: 153 IETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVM-KALKR 211
I + L+ + +TS F+ + +K GS +++KLM + +D+ +A+ R
Sbjct: 65 ISVLDTGTLMWMASLMTSDCDYFMVITTNKNGSKTLQKLMGMSDD----MDVFFFEAIMR 120
Query: 212 LFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEM 271
LF +M K S V +Q + +++ + K + +Y L + +LA + GCI +N I ++
Sbjct: 121 LFIHVMTDKYASYVTIQGM-RVFQQD-KRELMYDQILRYACFLAGDQYGCIALNEIITDL 178
Query: 272 KGPR-RKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTK 330
P R Q+L +++ NA LS + GN+VVQHVL+L D I L G+ ++LS K
Sbjct: 179 DDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKK 238
Query: 331 CGSFVVQNCLKYR-ITVNYIVEEFLL-NSDQIFRVACDKYGNYVIQTALIETMRPNSLHL 388
GS++V+ L+ + + +V + L ++ + R+A +YGN+V+ AL T + L
Sbjct: 239 YGSYIVERLLEAGDVPMATVVLDLLACKTEMLIRLARSEYGNFVVCKALELTNEILTADL 298
Query: 389 HQRLVTKL 396
LV +L
Sbjct: 299 FYGLVNRL 306
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 275 (101.9 bits), Expect = 4.0e-21, P = 4.0e-21
Identities = 78/296 (26%), Positives = 152/296 (51%)
Query: 103 LAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLL 162
L +D+ G ++LQ++L S+ D +F ++T +++ + + ++ K +E +Q +
Sbjct: 571 LCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRI 630
Query: 163 RITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPG 222
+T +I+S FV+ S++ G+ +++KL++ + +V+ +L+ L G
Sbjct: 631 VLT-KISSPH--FVEISLNPHGTRALQKLIECIKTDEEA-QIVVDSLRPYTVQLSKDLNG 686
Query: 223 SSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYL 282
+ V+ +CL+++ N + FI+ A + C+ +A H GC + +D + +
Sbjct: 687 NHVIQKCLQRLKPENFQ--FIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDK 744
Query: 283 ISVNAASLSRNFSGNYVVQHVLELE---DPY-LIETICFSLRGHYIDLSLTKCGSFVVQN 338
+ L+ + GNYVVQ+++ E + Y I L+ I+LS+ K GS V++
Sbjct: 745 LLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEK 804
Query: 339 CLKYRITVNYIVEEFLLNSDQ--IFRVACDKYGNYVIQTALIETMRPNSLHLHQRL 392
LK I ++ E L N + I + D YGNYV+QTAL + + N +L++RL
Sbjct: 805 ILKTAIVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQND-YLYKRL 859
Score = 123 (48.4 bits), Expect = 0.00038, P = 0.00038
Identities = 47/235 (20%), Positives = 104/235 (44%)
Query: 181 DKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKN 240
D+ G ++K + + ++ D + + K LM G+ ++ + LE++ +
Sbjct: 574 DQHGCRFLQKQLDILGSKAA--DAIFEETKDYTVELMTDSFGNYLIQKLLEEVT--TEQR 629
Query: 241 DFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILY-LISVNAASLSRNFSGNYV 299
+ + + H + ++ + G + I+ +K QI+ + LS++ +GN+V
Sbjct: 630 IVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHV 689
Query: 300 VQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRIT--VNYIVEEFLLNS 357
+Q L+ P + I ++ ID++ + G V+Q CL + T + + ++ L
Sbjct: 690 IQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALV 749
Query: 358 DQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRFG-YGKHV 411
D++ D +GNYV+Q + + N ++V L+ L +G +V
Sbjct: 750 DKL---TLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNV 801
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 273 (101.2 bits), Expect = 9.2e-21, P = 9.2e-21
Identities = 80/330 (24%), Positives = 160/330 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q+KL VFN + + +Q++ + + +V KF E + D
Sbjct: 731 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 790
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++++++ ++ ++K L +
Sbjct: 791 QKLALATRIRGH---VLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKD 847
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 848 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPI 905
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG + LS K S VV+ C
Sbjct: 906 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKC 965
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 966 VTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQK-MIDMAEPAQRKI---IM 1021
Query: 394 TKLQQNLDSLR-FGYGKHVYNFIKDCDLQN 422
K++ ++ +LR + YGKH+ ++ L+N
Sbjct: 1022 HKIRPHITTLRKYTYGKHILAKLEKYYLKN 1051
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 271 (100.5 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 80/330 (24%), Positives = 160/330 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q+KL VFN + + +Q++ + + +V KF E + D
Sbjct: 569 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEIVQAAYQLMTDVFGNYVIQKFFEFGSLD 628
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++++++ ++ ++K L +
Sbjct: 629 QKLALANRIRGH---VLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKD 685
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 686 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPI 743
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG + LS K S VV+ C
Sbjct: 744 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKC 803
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 804 VTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQK-MIDMAEPAQRKI---IM 859
Query: 394 TKLQQNLDSLR-FGYGKHVYNFIKDCDLQN 422
K++ ++ +LR + YGKH+ ++ L+N
Sbjct: 860 HKIRPHITTLRKYTYGKHILAKLEKYYLKN 889
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 271 (100.5 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 80/330 (24%), Positives = 160/330 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q+KL VFN + + +Q++ + + +V KF E + D
Sbjct: 731 IVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 790
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++++++ ++ ++K L +
Sbjct: 791 QKLALATRIRGH---VLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKD 847
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 848 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPI 905
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG + LS K S VV+ C
Sbjct: 906 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKC 965
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 966 VTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQK-MIDMAEPAQRKI---IM 1021
Query: 394 TKLQQNLDSLR-FGYGKHVYNFIKDCDLQN 422
K++ ++ +LR + YGKH+ ++ L+N
Sbjct: 1022 HKIRPHITTLRKYTYGKHILAKLEKYYLKN 1051
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 268 (99.4 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 102/418 (24%), Positives = 196/418 (46%)
Query: 15 NNLSLSFENLQVNDPSYSSF-NEIHPSPP--------VPLYPQSTWAVPSLSGRSTV--- 62
+N ++SF N++ N+ S SS N I P +Y ++G ST
Sbjct: 372 SNSNISFSNIKPNNGSLSSSANSISTGLPNLSGGKINTNVYSSLGNIGSGMNGSSTKDDS 431
Query: 63 --PNLSGTSNPQYETITSSNFQTPLGFQANPFQHCAN----SG-ILLLAQDEQGSQYLQE 115
P T + + +T S + +G N C + +G I L + + G ++LQ+
Sbjct: 432 VSPTKKSTDHQPRKPMTKSVSMSSIGLN-NQDPKCTSLEEITGQIYHLTKYQAGCRFLQK 490
Query: 116 KLTSG-DSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQL 174
KL DS + +FN V + +++ + Y +++ + ++ C+ +Q +I +I +
Sbjct: 491 KLEEKPDSEHVTLIFNEVFDHLNELMIDPYGQYLIPQLMKYCDNNQRRQIVDKIAPSVET 550
Query: 175 FVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIY 234
F + +G I+KL++ ++ P ++ ++ ++K L G+ ++ L+Q
Sbjct: 551 F---ACHVYGIHGIQKLLQYLS--PDQVESIIASIKGKVIQLSKDNKGNYLIQSFLKQF- 604
Query: 235 HHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNF 294
N F+ A + + + H+ GC +N ID + ++++ I+ ++ L ++
Sbjct: 605 -SPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCIDNANPEQLEKLVDKITEHSLKLVQDQ 663
Query: 295 SGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRITVNY-IVEEF 353
GNYVVQH+L Y + I SL+ + +LS+ K S V++ CL+ T Y ++ +
Sbjct: 664 FGNYVVQHLLSKNKAYSSKLIV-SLKDNIAELSIQKFSSNVIEKCLQLADTPTYELIIKA 722
Query: 354 LLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRFGYGKHV 411
L +D I + DKY N+VIQTAL + N H +LV + + ++ Y H+
Sbjct: 723 LTEAD-ILSLLQDKYANFVIQTALDVS---NDTQ-HAKLVKIIVPYIHQIKTPYVIHI 775
Score = 140 (54.3 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 57/255 (22%), Positives = 110/255 (43%)
Query: 169 TSQDQLFVQA-SVDKFGSSSIRKLMKAVANRPPL--LDLVMKALKRLFRLLMMTKPGSSV 225
TS +++ Q + K+ + R L K + +P + L+ + LM+ G +
Sbjct: 466 TSLEEITGQIYHLTKY-QAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMIDPYGQYL 524
Query: 226 VLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISV 285
+ Q ++ Y NN+ I ACH G + + + + + I+ I
Sbjct: 525 IPQLMK--YCDNNQRRQIVDKIAPSVETFACHVYGIHGIQKLLQYLSPDQVESIIASIKG 582
Query: 286 NAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRIT 345
LS++ GNY++Q L+ P + + +C ++ G+ ++ K G VV C+
Sbjct: 583 KVIQLSKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCID---N 639
Query: 346 VNYIVEEFLLN--SDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSL 403
N E L++ ++ ++ D++GNYV+Q L + +S +L+ L+ N+ L
Sbjct: 640 ANPEQLEKLVDKITEHSLKLVQDQFGNYVVQHLLSKNKAYSS-----KLIVSLKDNIAEL 694
Query: 404 RFGYGKHVYNFIKDC 418
K N I+ C
Sbjct: 695 SIQ--KFSSNVIEKC 707
Score = 52 (23.4 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 46 YPQSTWAVPSL-SGRSTVPNLSGTSNPQYETITSSNFQTPLGFQANPFQHCANSGI 100
+P S+ SL S ++ S TS+P T T+ N Q P F++ + + SG+
Sbjct: 226 HPSSSSTPSSLNSSGGSISTSSSTSSPATSTNTTPNTQAP--FKSPRKLNTSGSGL 279
Score = 43 (20.2 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 25/88 (28%), Positives = 37/88 (42%)
Query: 3 TSRTHPVSETQLN-NLSLSFENLQVNDPSYSSFNEIHPSP-PVPLYPQSTWAVPSLSGRS 60
+S + P + T N F++ + + S S I P P ++ + S S +
Sbjct: 247 SSTSSPATSTNTTPNTQAPFKSPRKLNTSGSGLTSIIPPGFSNESSPNTSSNIVSPSTTT 306
Query: 61 TVPNLSGTSNPQYETITSSNFQTPLGFQ 88
T P LS TS P T T+ TP FQ
Sbjct: 307 TTP-LSSTS-PSTTTTTT----TPTSFQ 328
Score = 38 (18.4 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 4 SRTHPVSETQLNNLSLSFENLQVNDPSYSSFNEI 37
S H + ++S+S L DP +S EI
Sbjct: 438 STDHQPRKPMTKSVSMSSIGLNNQDPKCTSLEEI 471
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 265 (98.3 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 81/330 (24%), Positives = 159/330 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q+KL VFN + + +Q++ + + +V KF E + D
Sbjct: 728 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 787
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K +++++ P + ++K L +
Sbjct: 788 QKLALATRIRGH---VLPLALQMYGCRVIQKALESIS--PDQQNEMVKELDGHVLKCVKD 842
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 843 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPI 900
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG + LS K S VV+ C
Sbjct: 901 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKC 960
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 961 VTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQK-MIDMAEPAQRKI---IM 1016
Query: 394 TKLQQNLDSLR-FGYGKHVYNFIKDCDLQN 422
K++ ++ +LR + YGKH+ ++ L+N
Sbjct: 1017 HKIRPHITTLRKYTYGKHILAKLEKYYLKN 1046
Score = 45 (20.9 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 40 SPPVPLYPQSTWAVPSLSGRSTVPNLSGTSNPQYETITSS----NFQTPLGFQANPFQHC 95
S PV + + A + S T NL+G +N + + + QT Q+N F +
Sbjct: 464 STPVIISSAAAQAAAAASAGGTANNLTGATNGLFRPLGAQPQQQQQQTNSSLQSNSF-YG 522
Query: 96 ANS 98
+NS
Sbjct: 523 SNS 525
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 265 (98.3 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 81/330 (24%), Positives = 159/330 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q+KL VFN + + +Q++ + + +V KF E + D
Sbjct: 729 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 788
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K +++++ P + ++K L +
Sbjct: 789 QKLALATRIRGH---VLPLALQMYGCRVIQKALESIS--PDQQNEMVKELDGHVLKCVKD 843
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 844 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPI 901
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG + LS K S VV+ C
Sbjct: 902 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKC 961
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 962 VTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQK-MIDMAEPAQRKI---IM 1017
Query: 394 TKLQQNLDSLR-FGYGKHVYNFIKDCDLQN 422
K++ ++ +LR + YGKH+ ++ L+N
Sbjct: 1018 HKIRPHITTLRKYTYGKHILAKLEKYYLKN 1047
Score = 45 (20.9 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 40 SPPVPLYPQSTWAVPSLSGRSTVPNLSGTSNPQYETITSS----NFQTPLGFQANPFQHC 95
S PV + + A + S T NL+G +N + + + QT Q+N F +
Sbjct: 465 STPVIISSAAAQAAAAASAGGTANNLTGATNGLFRPLGAQPQQQQQQTNSSLQSNSF-YG 523
Query: 96 ANS 98
+NS
Sbjct: 524 SNS 526
>CGD|CAL0004399 [details] [associations]
symbol:orf19.5381 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001308 "negative
regulation of chromatin silencing involved in replicative cell
aging" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
CGD:CAL0004399 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AACQ01000050 RefSeq:XP_717758.1
ProteinModelPortal:Q5A835 GeneID:3640530 KEGG:cal:CaO19.5381
Uniprot:Q5A835
Length = 783
Score = 264 (98.0 bits), Expect = 6.4e-20, P = 6.4e-20
Identities = 103/437 (23%), Positives = 192/437 (43%)
Query: 8 PVSETQLNNLSLSFENLQVNDPSYSSFNEIHPSPPVPLYPQSTWAVPS-LSGRSTVPNLS 66
P + QL + ++ Q P P P P+ PQ + + R N +
Sbjct: 360 PFGQQQLQTVYSPTQSTQ--SPLLPQQGPPQPQPAFPMMPQHNFHQHNQYHPRPHYRNNN 417
Query: 67 GTSNPQYETITSSNFQTPLGFQANPFQHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLD 126
G N + + + + Q S IL L +D+ G ++LQ +L + + L
Sbjct: 418 GMMNVHRKNLRRK--EDSAKYSDAKLQDFTGS-ILTLCKDQHGCRFLQRELINETNATL- 473
Query: 127 KVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSS 186
+FN + +++ + + ++ K N +Q R+ L ++LF + ++D G+
Sbjct: 474 -IFNEIYFKAVELMIDPFGNYLIQKLFTMINLEQ--RLVLINQCSNELF-RIALDPHGTR 529
Query: 187 SIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIY------------ 234
S++KL+ + + +++ + L +L G+ VV + L +
Sbjct: 530 SLQKLIDVIETNEEI-EIITRNLYSNIVVLSRDLNGNHVVQKILTKFNTISSDSNSSDSN 588
Query: 235 ----HHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASL 290
H N+N FI+ + LY+ACH GC + +D + +Q+ I+ + L
Sbjct: 589 RDGAQHQNQNQFIFDIIQANLLYIACHRHGCCVLQRCLDYGNKQQCQQLSQEIAKHTIKL 648
Query: 291 SRNFSGNYVVQHVL---------ELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLK 341
S + GNYVVQ+VL + D +I+ I ++ ++I LSL K GS V++ CLK
Sbjct: 649 SLDPYGNYVVQYVLNKYSVGGDAQNTDNQVIDIIIQEIKSNFIQLSLHKFGSNVIEKCLK 708
Query: 342 YR-ITVNYIVEEFLLNSDQIF-RVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQN 399
I+ + I +L+ Q F ++ D +GNYV+QT+L + +++ L N
Sbjct: 709 ISSISKDLIDNLIVLDHGQAFNQLLNDPFGNYVLQTSL-DVANLEQFEQLSKILLPLLPN 767
Query: 400 LDSLRFGYGKHVYNFIK 416
+ S +G+ + N I+
Sbjct: 768 IKSTP--HGRRILNKIQ 782
>TAIR|locus:2167786 [details] [associations]
symbol:PUM14 "pumilio 14" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 HOGENOM:HOG000136003
ProtClustDB:CLSN2686651 EMBL:DQ056705 IPI:IPI00526385
RefSeq:NP_199125.2 UniGene:At.55331 ProteinModelPortal:Q4PSD1
SMR:Q4PSD1 PRIDE:Q4PSD1 EnsemblPlants:AT5G43110.1 GeneID:834328
KEGG:ath:AT5G43110 TAIR:At5g43110 InParanoid:Q4PSD1
PhylomeDB:Q4PSD1 Genevestigator:Q4PSD1 Uniprot:Q4PSD1
Length = 518
Score = 260 (96.6 bits), Expect = 7.1e-20, P = 7.1e-20
Identities = 75/296 (25%), Positives = 139/296 (46%)
Query: 86 GFQANPFQHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYA 145
G + + C S A+D++ S+ L + G +D ++N + +++ + Y
Sbjct: 192 GNEGFDYNQCQAS-FSAFAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYG 250
Query: 146 RFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPP-LLDL 204
V + C+ +Q++++ +T Q FV +D G+++I+ L+ + R +
Sbjct: 251 SDVVQLLMRRCSSEQIVQLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPR 310
Query: 205 VMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINM 264
++ ++ + L + V+L C H + + +++C +A + GC +
Sbjct: 311 IVDVVRTVALQLSKSNHAIFVILACFRLFPLHCR---LLLELIVQNCHQIAIDQHGCCLL 367
Query: 265 NNFIDEMKGPR---RKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRG 321
++ + P R++++ NA L N GNYVVQ+++EL + YLI+ + L G
Sbjct: 368 QLCFNKDRVPNLEIRQRLIMEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIG 427
Query: 322 HYIDLSLTKCGSFVVQNCLKYR-ITVNYIVEEFLLNSDQIFRVACDKYGNYVIQTA 376
+Y L+ K GS VQ LK R I IV + L D + D +GNYVIQTA
Sbjct: 428 NYAHLARNKYGSHAVQKLLKLRWIDSRVIVIDLLREIDTLL---LDPFGNYVIQTA 480
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 260 (96.6 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 81/330 (24%), Positives = 159/330 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q+KL VFN + + +Q++ + + +V KF E + D
Sbjct: 736 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 795
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++++++ ++V K L +
Sbjct: 796 QKLALATRIRGH---VLPLALQMYGCRVIQKALESISSDQQS-EMV-KELDGHVLKCVKD 850
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 851 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPI 908
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG + LS K S VV+ C
Sbjct: 909 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKC 968
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 969 VTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQK-MIDMAEPAQRKI---IM 1024
Query: 394 TKLQQNLDSLR-FGYGKHVYNFIKDCDLQN 422
K++ ++ +LR + YGKH+ ++ L+N
Sbjct: 1025 HKIRPHISTLRKYTYGKHILAKLEKYYLKN 1054
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 259 (96.2 bits), Expect = 3.6e-19, P = 3.6e-19
Identities = 81/330 (24%), Positives = 159/330 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q+KL VFN + + +Q++ + + +V KF E + D
Sbjct: 675 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 734
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++++++ ++V K L +
Sbjct: 735 QKLALATRIRGH---VLPLALQMYGCRVIQKALESISSDQQS-EMV-KELDGHVLKCVKD 789
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 790 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPI 847
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG + LS K S VV+ C
Sbjct: 848 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKC 907
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 908 VTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQK-MIDMAEPAQRKI---IM 963
Query: 394 TKLQQNLDSLR-FGYGKHVYNFIKDCDLQN 422
K++ ++ +LR + YGKH+ ++ L+N
Sbjct: 964 HKIRPHITTLRKYTYGKHILAKLEKYYLKN 993
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 259 (96.2 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 81/330 (24%), Positives = 159/330 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q+KL VFN + + +Q++ + + +V KF E + D
Sbjct: 730 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 789
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++++++ ++V K L +
Sbjct: 790 QKLALATRIRGH---VLPLALQMYGCRVIQKALESISSDQQS-EMV-KELDGHVLKCVKD 844
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 845 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPI 902
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG + LS K S VV+ C
Sbjct: 903 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKC 962
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 963 VTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQK-MIDMAEPAQRKI---IM 1018
Query: 394 TKLQQNLDSLR-FGYGKHVYNFIKDCDLQN 422
K++ ++ +LR + YGKH+ ++ L+N
Sbjct: 1019 HKIRPHITTLRKYTYGKHILAKLEKYYLKN 1048
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 259 (96.2 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 81/330 (24%), Positives = 159/330 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q+KL VFN + + +Q++ + + +V KF E + D
Sbjct: 731 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 790
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++++++ ++V K L +
Sbjct: 791 QKLALATRIRGH---VLPLALQMYGCRVIQKALESISSDQQS-EMV-KELDGHVLKCVKD 845
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 846 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPI 903
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG + LS K S VV+ C
Sbjct: 904 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKC 963
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 964 VTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQK-MIDMAEPAQRKI---IM 1019
Query: 394 TKLQQNLDSLR-FGYGKHVYNFIKDCDLQN 422
K++ ++ +LR + YGKH+ ++ L+N
Sbjct: 1020 HKIRPHITTLRKYTYGKHILAKLEKYYLKN 1049
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 253 (94.1 bits), Expect = 9.2e-19, P = 9.2e-19
Identities = 91/346 (26%), Positives = 162/346 (46%)
Query: 37 IHPSPPVPLYPQSTWAVPSLSGRS--TVPNLSGTSNPQYETITSSNFQTPLGFQANPFQH 94
I P+P + +T PS + VP+L + +P + SS+ + L Q
Sbjct: 293 IAPTPTISPPSANTVGNPSPADTPGFNVPSLI-SDDPSVSSSLSSSVAS-LSLQ------ 344
Query: 95 CANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIE 154
NS IL +D+ G +YLQ L + +D VF + ++ + + ++ K E
Sbjct: 345 --NSNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFE 402
Query: 155 TCNEDQLLRIT-LQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLF 213
+E Q R T +QI + V S + G+ +++K++ V++ P + ++ AL+
Sbjct: 403 HASEAQ--RSTFIQIIAPK--LVPISFNMHGTRALQKIIDLVSS-PDQISCIVNALRPNV 457
Query: 214 RLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKG 273
LL G+ V+ +CL + + + FI+ A E L ++ H GC + D
Sbjct: 458 VLLTKDLNGNHVIQKCLNKFSQEDCQ--FIFDAICEDPLDVSTHRHGCCVVQRCFDHASP 515
Query: 274 PRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGS 333
+ +Q++ I +A +L ++ GNYV+Q+VLEL +P E I LS K S
Sbjct: 516 AQIEQLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSS 575
Query: 334 FVVQNCLKYRITV--NYIVEEFLLNSDQIFRVACDKYGNYVIQTAL 377
V++ C+ + ++ E L++ + ++ D + NYVIQTAL
Sbjct: 576 NVMEKCIFFAPAAIKEKLISE-LMDEKHLPKLLRDSFANYVIQTAL 620
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 255 (94.8 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 76/319 (23%), Positives = 155/319 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL + VFN + + +Q++ + + +V KF E + +
Sbjct: 854 IMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHE 913
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + +++ +++ L +
Sbjct: 914 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 970
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 971 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 1028
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 1029 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 1088
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 1089 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPGQRKI---VM 1144
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 1145 HKIRPHIATLRKYTYGKHI 1163
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 252 (93.8 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 99/415 (23%), Positives = 182/415 (43%)
Query: 17 LSLSFENLQVNDPSYSSFNEIHPSPPVPLYPQSTWAVPSLSGRSTVPNLSGTSNPQYETI 76
+ +++ +Q N + H PP L P V + G +L G + P+
Sbjct: 459 MGVNYYGIQPNMGIMVQYLPTHLGPP--LSPGHVPYVEAYPGWQPQGSLEGANGPRL--- 513
Query: 77 TSSNFQTPL-GFQANPFQHCANSG-ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSE 134
NF L + F +G I+ + D+ GS+++Q+KL + VF +
Sbjct: 514 --CNFLEELKSGKGRRFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILP 571
Query: 135 FTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKA 194
+++ + + +V KF E N Q + Q+ Q V S+ +G I+K +
Sbjct: 572 HACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQ---IVPLSLQMYGCRVIQKALDV 628
Query: 195 VANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYL 254
+ P + + L + + G+ V+ +C+E I +K F+ A L
Sbjct: 629 I--EPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIENI--PADKVGFMLYAFRGQVSSL 684
Query: 255 ACHEQGCINMNNFIDEMKGPRR-KQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIE 313
+ H GC + ++ + + I I + LS++ GNYV QHVLE E
Sbjct: 685 SMHPYGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERE 744
Query: 314 TICFSLRGHYIDLSLTKCGSFVVQNCLKY--RITVNYIVEEFLLNSDQIFR----VACDK 367
I L GH + LSL K S V++ CL+Y R+ + I++E + D+ + + D+
Sbjct: 745 RIGRKLSGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKE-IAGPDESYNSLLMMMKDQ 803
Query: 368 YGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLR-FGYGKHVYNFIKDCDLQ 421
YGNYV+Q + ET + L ++++ + +L+ + YGKH+ + ++ ++
Sbjct: 804 YGNYVVQK-IFETCTADQ---RLTLFSRVRMHASALKKYTYGKHIVSRLEQPSIE 854
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 250 (93.1 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 76/319 (23%), Positives = 154/319 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 565 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 624
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + +++ +++ L +
Sbjct: 625 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 681
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 682 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 739
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 740 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 799
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 800 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPGQRKI---VM 855
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 856 HKIRPHIATLRKYTYGKHI 874
>TAIR|locus:2167771 [details] [associations]
symbol:PUM13 "pumilio 13" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 IPI:IPI00522991 RefSeq:NP_199123.1
UniGene:At.55330 ProteinModelPortal:Q9FMH4 SMR:Q9FMH4 PaxDb:Q9FMH4
PRIDE:Q9FMH4 EnsemblPlants:AT5G43090.1 GeneID:834325
KEGG:ath:AT5G43090 TAIR:At5g43090 HOGENOM:HOG000136003
InParanoid:Q9FMH4 OMA:NGERNIW PhylomeDB:Q9FMH4
ProtClustDB:CLSN2686651 Genevestigator:Q9FMH4 Uniprot:Q9FMH4
Length = 527
Score = 245 (91.3 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 71/279 (25%), Positives = 129/279 (46%)
Query: 103 LAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLL 162
+A D S+ L++ + G +D +F+ + +++ + + V I C+ +Q++
Sbjct: 216 IATDRVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQII 275
Query: 163 RITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPP-LLDLVMKALKRLFRLLMMTKP 221
I +T FV + G+ +I+ L+ ++ R + +M A+ + L
Sbjct: 276 LIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRNTN 335
Query: 222 GSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPR---RKQ 278
V+L C + + + +HC +A + GC + D+ + P R++
Sbjct: 336 AKYVILACFRMFTSSQCRR--LLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQR 393
Query: 279 ILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQN 338
++ + +A L N GNYVVQ+V+EL++ + + + L +Y L+ K GS VVQ
Sbjct: 394 LISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQK 453
Query: 339 CLKYR-ITVNYIVEEFLLNSDQIFRVACDKYGNYVIQTA 376
LK R I IV + L D + D +GNYVIQTA
Sbjct: 454 LLKLRGIDSKLIVVDLLRGIDTLL---LDPFGNYVIQTA 489
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 250 (93.1 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 76/319 (23%), Positives = 154/319 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 709 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 768
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + +++ +++ L +
Sbjct: 769 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 825
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 826 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 883
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 884 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 943
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 944 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPGQRKI---VM 999
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 1000 HKIRPHIATLRKYTYGKHI 1018
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 252 (93.8 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 76/320 (23%), Positives = 155/320 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
++ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + D
Sbjct: 818 VMEFSQDQHGSRFIQLKLERASPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLD 877
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + +++ +++ L +
Sbjct: 878 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 934
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLY-LACHEQGCINMNNFIDEMKGPRRKQ 278
+ G+ VV +C+E + H + FI A ++ L+ H GC + ++ +
Sbjct: 935 QNGNHVVQKCIECVQPHALQ--FIIDAFKGQQVFALSTHPYGCRVIQRILEHCLPEQTLS 992
Query: 279 ILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQN 338
IL I + L ++ GNYV+QHVLE I +RG+ + LS K S VV+
Sbjct: 993 ILEEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDKSKIVSEIRGNVLGLSQHKFASNVVEK 1052
Query: 339 CLKYRITVN--YIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRL 392
C+ + + +++E +D ++ + D+Y NYV+Q +I+ P + +
Sbjct: 1053 CVTHSLRAERAMLIDEVCSMADGPHSALYTMMKDQYANYVVQK-MIDVAEPTQRKI---V 1108
Query: 393 VTKLQQNLDSLR-FGYGKHV 411
+ K++ ++ +LR + YGKH+
Sbjct: 1109 MHKIRPHIATLRKYTYGKHI 1128
Score = 43 (20.2 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 63 PNLSGTSNPQYETITSSNFQTPLGFQANP 91
P+ S S+ + ++ T LGF ANP
Sbjct: 613 PSSSSQSSSLFSQGSAQPGNTSLGFNANP 641
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 250 (93.1 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 76/319 (23%), Positives = 154/319 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 853 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 912
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + +++ +++ L +
Sbjct: 913 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 969
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 970 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 1027
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 1028 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 1087
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 1088 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPGQRKI---VM 1143
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 1144 HKIRPHIATLRKYTYGKHI 1162
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 250 (93.1 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 76/319 (23%), Positives = 154/319 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 854 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 913
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + +++ +++ L +
Sbjct: 914 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 970
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 971 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 1028
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 1029 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 1088
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 1089 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPGQRKI---VM 1144
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 1145 HKIRPHIATLRKYTYGKHI 1163
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 250 (93.1 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 76/319 (23%), Positives = 154/319 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 889 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 948
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + +++ +++ L +
Sbjct: 949 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 1005
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 1006 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 1063
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 1064 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 1123
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 1124 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPGQRKI---VM 1179
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 1180 HKIRPHIATLRKYTYGKHI 1198
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 251 (93.4 bits), Expect = 5.4e-18, P = 5.4e-18
Identities = 78/316 (24%), Positives = 150/316 (47%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q+KL + VF+ + + ++ + + +V KF E +
Sbjct: 1116 IVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPE 1175
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q + +Q+ +Q ++ +G I+K +++++ P ++ L +
Sbjct: 1176 QKNTLGMQVKGH---VLQLALQMYGCRVIQKALESIS--PEQQQEIVHELDGHVLKCVKD 1230
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + FI A L+ H GC + ++ + I
Sbjct: 1231 QNGNHVVQKCIECV--DPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPI 1288
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE + S+RG + LS K S VV+ C
Sbjct: 1289 LDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKC 1348
Query: 340 LKY--RITVNYIVEEFLLNSDQIFRVAC-DKYGNYVIQTALIETMRPNSLHLHQRLVTKL 396
+ + R +++E +D V D+Y NYV+Q +I+ P L ++L+TK+
Sbjct: 1349 VTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQK-MIDVSEPTQL---KKLMTKI 1404
Query: 397 QQNLDSLR-FGYGKHV 411
+ ++ +LR + YGKH+
Sbjct: 1405 RPHMAALRKYTYGKHI 1420
Score = 155 (59.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 56/215 (26%), Positives = 100/215 (46%)
Query: 166 LQITSQDQLFVQASVDKFGSSSIR-KLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSS 224
LQ+ V+ S D+ GS I+ KL +A A ++ + L + L MT +
Sbjct: 1107 LQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMV--FSEILAAAYSL--MTDVFGN 1162
Query: 225 VVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLIS 284
V+Q + KN Q H L LA GC + ++ + ++++I++ +
Sbjct: 1163 YVIQKFFEFGTPEQKNTLGMQVK-GHVLQLALQMYGCRVIQKALESISPEQQQEIVHELD 1221
Query: 285 VNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRI 344
+ ++ +GN+VVQ +E DP ++ I + +G LS G V+Q L++
Sbjct: 1222 GHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCT 1281
Query: 345 T--VNYIVEEFLLNSDQIFRVACDKYGNYVIQTAL 377
I++E +++Q+ + D+YGNYVIQ L
Sbjct: 1282 AEQTTPILDELHEHTEQLIQ---DQYGNYVIQHVL 1313
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 248 (92.4 bits), Expect = 8.1e-18, P = 8.1e-18
Identities = 76/319 (23%), Positives = 154/319 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 827 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 886
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + +++ +++ L +
Sbjct: 887 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 943
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 944 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 1001
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 1002 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 1061
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 1062 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPAQRKI---VM 1117
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 1118 HKIRPHIATLRKYTYGKHI 1136
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 248 (92.4 bits), Expect = 8.8e-18, P = 8.8e-18
Identities = 76/319 (23%), Positives = 154/319 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 889 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 948
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + +++ +++ L +
Sbjct: 949 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 1005
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 1006 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 1063
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 1064 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 1123
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 1124 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPAQRKI---VM 1179
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 1180 HKIRPHIATLRKYTYGKHI 1198
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 246 (91.7 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 80/322 (24%), Positives = 155/322 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 854 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 913
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLF-RLLMM 218
Q L + +I + ++ +G I+K ++ + PP ++ + ++ L +L
Sbjct: 914 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFI---PPDQQVINEMVRELDGHVLKC 967
Query: 219 TKP--GSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRR 276
K G+ VV +C+E + + + FI A L+ H GC + ++ +
Sbjct: 968 VKDQNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQT 1025
Query: 277 KQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVV 336
IL + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV
Sbjct: 1026 LPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVV 1085
Query: 337 QNCLKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQ 390
+ C+ + R +++E +D ++ + D+Y NYV+Q +I+ P +
Sbjct: 1086 EKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPAQRKI-- 1142
Query: 391 RLVTKLQQNLDSLR-FGYGKHV 411
++ K++ ++ +LR + YGKH+
Sbjct: 1143 -VMHKIRPHIATLRKYTYGKHI 1163
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 241 (89.9 bits), Expect = 3.8e-17, P = 3.8e-17
Identities = 76/319 (23%), Positives = 154/319 (48%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL + VFN + + +Q++ + + +V KF E + +
Sbjct: 611 IMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHE 670
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + ++V + + + +
Sbjct: 671 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQN-EMVRELDGHVLKCVK-D 725
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 726 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 783
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 784 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 843
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 844 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPGQRKI---VM 899
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 900 HKIRPHIATLRKYTYGKHI 918
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 232 (86.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 82/322 (25%), Positives = 153/322 (47%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
++ + D+ GS+++Q+KL + + + V+ + ++ + + +V KF E
Sbjct: 635 VVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLPP 694
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q + ++ D + + S+ +G I+K ++ V LD +K +K L +M
Sbjct: 695 QRRELAEKLF--DHV-LPLSLQMYGCRVIQKAIEVVD-----LDQKIKMVKELDGHVMRC 746
Query: 220 ---KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGP-R 275
+ G+ VV +C+E + N +FI H + L+ H GC + ++ P
Sbjct: 747 VRDQNGNHVVQKCIECVPEENI--EFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDT 804
Query: 276 RKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFV 335
+ +++ I + L+++ GNYVVQHVLE P I L G + +S K S V
Sbjct: 805 QSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNV 864
Query: 336 VQNCLKYRITVN--YIVEEFLLNSDQ---IFRVACDKYGNYVIQTALIETMRPNSLHLHQ 390
V+ CL + +V E L +D+ + + D++ NYV+Q L ET L
Sbjct: 865 VEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVL-ETCDDQQREL-- 921
Query: 391 RLVTKLQQNLDSLR-FGYGKHV 411
++T+++ +L +L+ + YGKHV
Sbjct: 922 -ILTRIKVHLTALKKYTYGKHV 942
Score = 50 (22.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 28 DPSYSSFNEIHPSPPVPLYPQSTWAVPSLSGRSTVPNLSGTSNPQYETITSSNFQTPLG 86
D + S N + PS + S ++ ++ G S N GT +PQ S TP+G
Sbjct: 223 DENVDSNNNLSPSASQGIGAPSPYSYAAVLGSSLSRN--GTPDPQAIARVPSPCLTPIG 279
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 236 (88.1 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 76/319 (23%), Positives = 153/319 (47%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 611 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 670
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + ++V + + + +
Sbjct: 671 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQN-EMVRELDGHVLKCVK-D 725
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 726 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 783
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 784 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 843
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 844 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPGQRKI---VM 899
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 900 HKIRPHIATLRKYTYGKHI 918
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 234 (87.4 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 76/319 (23%), Positives = 153/319 (47%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 402 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 461
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + ++V + + + +
Sbjct: 462 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQN-EMVRELDGHVLKCVK-D 516
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 517 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 574
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 575 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 634
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 635 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPAQRKI---VM 690
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 691 HKIRPHIATLRKYTYGKHI 709
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 236 (88.1 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 76/319 (23%), Positives = 153/319 (47%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 792 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 851
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + ++V + + + +
Sbjct: 852 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQN-EMVRELDGHVLKCVK-D 906
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 907 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 964
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 965 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 1024
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 1025 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPGQRKI---VM 1080
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 1081 HKIRPHIATLRKYTYGKHI 1099
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 236 (88.1 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 76/319 (23%), Positives = 153/319 (47%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 794 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 853
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + ++V + + + +
Sbjct: 854 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQN-EMVRELDGHVLKCVK-D 908
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 909 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 966
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 967 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 1026
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 1027 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPGQRKI---VM 1082
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 1083 HKIRPHIATLRKYTYGKHI 1101
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 236 (88.1 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 76/319 (23%), Positives = 153/319 (47%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 853 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 912
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + ++V + + + +
Sbjct: 913 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQN-EMVRELDGHVLKCVK-D 967
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 968 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 1025
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 1026 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 1085
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 1086 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPGQRKI---VM 1141
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 1142 HKIRPHIATLRKYTYGKHI 1160
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 237 (88.5 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 98/415 (23%), Positives = 184/415 (44%)
Query: 13 QLNNLSLSFENLQVNDPSYSSFNEI---H-PSPPVPLYPQSTWAVPSLSGRSTVPNLSGT 68
QL NL+ + PSY N H PSP + + VP G
Sbjct: 575 QLGNLNAANSRF-FESPSYDLGNMYLGNHLPSPSKNSRNFQNMRMSQSASMMKVP-FGGL 632
Query: 69 SNPQYETITSSNFQTPL-GFQANPFQHCANSGI----LLLAQDEQGSQYLQEKLTSGDSR 123
+ I S+ + L GF+ N + S I + + D+ GS+++Q+KL +
Sbjct: 633 QGSSHVDIGSTAEASLLEGFKNNKTRSLELSEIVGHVIEFSMDQYGSRFIQQKLETATDE 692
Query: 124 FLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKF 183
+ +F + + ++ + + +V KF E Q + Q+T + S+ +
Sbjct: 693 EKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGH---VLALSLQMY 749
Query: 184 GSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFI 243
G I+K ++ V ++K L + + G+ V+ +C+E++ + FI
Sbjct: 750 GCRVIQKALEVVELEQQAR--MVKELDGSVMKCVHDQNGNHVIQKCIERL--PQDWIQFI 805
Query: 244 YQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYL-ISVNAASLSRNFSGNYVVQH 302
+ L L+ H GC + ++ + ++I+ I + +L+++ GNYV+QH
Sbjct: 806 ISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQH 865
Query: 303 VLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRITVN--YIVEEFLLNSDQ- 359
+++ P+ I L G + +S K S VV+ CL + +V E L +D+
Sbjct: 866 IIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQVLVNEMLGYTDEN 925
Query: 360 --IFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSL-RFGYGKHV 411
+ + D +GNYV+Q L ET SL L ++++++ +L++L R+ YGKH+
Sbjct: 926 EPLQAMMKDPFGNYVVQKVL-ETCDDQSLAL---ILSRIKVHLNALKRYTYGKHI 976
Score = 42 (19.8 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 10 SETQLNNLSL-SFENLQVNDPSYSSF---NEIHPSP--PVPLYPQSTWAV 53
S T N + L S + L+ + P Y S+ NE H +P P PL + W V
Sbjct: 92 SITTSNGVELLSDDELRWH-PEYLSYYYSNE-HSNPRLPPPLLSREDWRV 139
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 234 (87.4 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 76/319 (23%), Positives = 153/319 (47%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 853 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 912
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + ++V + + + +
Sbjct: 913 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQN-EMVRELDGHVLKCVK-D 967
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A L+ H GC + ++ + I
Sbjct: 968 QNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPI 1025
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + + L ++ GNYV+QHVLE P I +RG+ + LS K S VV+ C
Sbjct: 1026 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 1085
Query: 340 LKY--RITVNYIVEEFLLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
+ + R +++E +D ++ + D+Y NYV+Q +I+ P + ++
Sbjct: 1086 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQK-MIDVAEPAQRKI---VM 1141
Query: 394 TKLQQNLDSLR-FGYGKHV 411
K++ ++ +LR + YGKH+
Sbjct: 1142 HKIRPHIATLRKYTYGKHI 1160
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 235 (87.8 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 77/313 (24%), Positives = 147/313 (46%)
Query: 106 DEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRIT 165
D+ GS+++Q+KL VF+ V +++ + + +V KFIE Q +
Sbjct: 639 DQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELV 698
Query: 166 LQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSV 225
Q+ Q V S+ +G I+K ++ + + +L+ + + + + + G+ V
Sbjct: 699 KQLAGQ---MVSLSLQMYGCRVIQKALEVI-DVDQKTELIRELDGNVLKCVR-DQNGNHV 753
Query: 226 VLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQ-ILYLIS 284
+ +C+E + + F+ A L+ H GC + ++ I+ I
Sbjct: 754 IQKCIESM--PAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEIL 811
Query: 285 VNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRI 344
+A +L+ + GNYV QHVLE P I L G+ + +S K S VV+ CL++
Sbjct: 812 ESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHAD 871
Query: 345 TVN--YIVEEFLLNSDQ---IFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQN 399
+ +++EE + S++ + + D++ NYV+Q L E + + LV +++ +
Sbjct: 872 STEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVL-EISKDQQREI---LVQRMKIH 927
Query: 400 LDSLR-FGYGKHV 411
L SLR + YGKH+
Sbjct: 928 LQSLRKYTYGKHI 940
Score = 41 (19.5 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 31 YSSFNEIHPSPPVPLYPQSTWAVPSLS 57
+S+F H P P+Y + + SLS
Sbjct: 369 HSTFQSPHGLAPPPMYTSTAAYMTSLS 395
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 227 (85.0 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 81/325 (24%), Positives = 154/325 (47%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
++ + D+ GS+++Q+KL + S + V+ + ++ + + +V KF E
Sbjct: 639 VVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFEHGLPP 698
Query: 160 QLLRITLQITSQDQLF---VQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLL 216
Q + D+LF + S+ +G I+K ++ V LD +K +K L +
Sbjct: 699 QRRELA------DKLFDNVLPLSLQMYGCRVIQKAIEVVD-----LDQKIKMVKELDGHV 747
Query: 217 MMT---KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKG 273
M + G+ VV +C+E + N +FI + + L+ H GC + ++
Sbjct: 748 MRCVRDQNGNHVVQKCIECVPEENI--EFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHD 805
Query: 274 P-RRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCG 332
P + +++ I + L+++ GNYV+QHVLE P I L G + +S K
Sbjct: 806 PDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFA 865
Query: 333 SFVVQNCLKYRITVN--YIVEEFLLNSDQ---IFRVACDKYGNYVIQTALIETMRPNSLH 387
S VV+ CL + ++V E L +D+ + + D++ NYV+Q L ET
Sbjct: 866 SNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVL-ETCDDQQRE 924
Query: 388 LHQRLVTKLQQNLDSLR-FGYGKHV 411
L ++ +++ +L++L+ + YGKH+
Sbjct: 925 L---ILGRIKVHLNALKKYTYGKHI 946
Score = 50 (22.7 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 28 DPSYSSFNEIHPSPPVPLYPQSTWAVPSLSGRSTVPNLSGTSNPQYETITSSNFQTPLG 86
D + S N + PS + S ++ ++ G S N GT +PQ S TP+G
Sbjct: 231 DENVDSKNNLSPSASQGIGAPSPYSYAAVLGSSLSRN--GTPDPQAIARVPSPCLTPIG 287
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 231 (86.4 bits), Expect = 5.2e-16, P = 5.2e-16
Identities = 77/319 (24%), Positives = 153/319 (47%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
++ + D+ GS+++Q+KL + + + V+ + ++ + + +V KF E
Sbjct: 631 VVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLPP 690
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q + ++ D + + S+ +G I+K ++ V + + +V + + R +
Sbjct: 691 QRRELGEKLI--DNV-LPLSLQMYGCRVIQKAIEVV-DLDQKIQMVKELDGHVMRCVR-D 745
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGP-RRKQ 278
+ G+ VV +C+E + N +FI H + L+ H GC + ++ P + +
Sbjct: 746 QNGNHVVQKCIECVPEENI--EFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSK 803
Query: 279 ILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQN 338
++ I + L+++ GNYVVQHVLE P I L G + +S K S VV+
Sbjct: 804 VMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEK 863
Query: 339 CLKYRITVN--YIVEEFLLNSDQ---IFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
CL + +V E L +D+ + + D++ NYV+Q L ET L ++
Sbjct: 864 CLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVL-ETCDDQQREL---IL 919
Query: 394 TKLQQNLDSLR-FGYGKHV 411
T+++ +L++L+ + YGKH+
Sbjct: 920 TRIKVHLNALKKYTYGKHI 938
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 228 (85.3 bits), Expect = 9.4e-16, Sum P(2) = 9.4e-16
Identities = 88/341 (25%), Positives = 156/341 (45%)
Query: 87 FQANPFQHCANSGIL----LLAQDEQGSQYLQEKLTSGDSRFLDKVFN-VVSEFTFQIIC 141
F AN +H S IL L + D+ GS+++Q+KL + + VF + S Q++
Sbjct: 384 FHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMM 443
Query: 142 NQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPL 201
+ + +V K+ E NE Q + QI + +F S+ +G ++K ++ ++ +
Sbjct: 444 DIFGNYVVQKYFEFGNEKQKQILLSQI--KGHVF-SLSLQMYGCRVVQKAIEYISPEHQV 500
Query: 202 LDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGC 261
L+ + + + + G+ V+ + +E I FI +A L+ H GC
Sbjct: 501 -QLIQELDGHVLDCVC-DQNGNHVIQKAIECI--DTGHLQFILRALRPQIHVLSAHPYGC 556
Query: 262 INMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVL----ELEDPYLIETICF 317
+ I+ RK I+ + + L+++ GNYVVQH+L E + Y+ + +
Sbjct: 557 RVIQRAIEHCHS-ERKLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMI- 614
Query: 318 SLRGHYIDLSLTKCGSFVVQNCLKY------RITVNYIVEEFLLNSDQIFRVACDKYGNY 371
H + LS K S VV+ C+ Y R +N I+ E N + + DKY NY
Sbjct: 615 ---DHLLFLSCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANY 671
Query: 372 VIQTALIETMRPNSLHLHQRLVTKLQQNLDSLR-FGYGKHV 411
VIQ L++ L L++ + ++ L+ F YGKH+
Sbjct: 672 VIQK-LLDASPEEERDL---LISYIYPHISVLKKFTYGKHL 708
Score = 124 (48.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 47/189 (24%), Positives = 83/189 (43%)
Query: 233 IYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLI-SVNAASLS 291
++H N + F L + + + + G + + R+ + I S + L
Sbjct: 383 LFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLM 442
Query: 292 RNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRITVNYIVE 351
+ GNYVVQ E + + + ++GH LSL G VVQ ++Y I+ + V+
Sbjct: 443 MDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEY-ISPEHQVQ 501
Query: 352 EFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLR-FGYG-K 409
+ CD+ GN+VIQ A IE + ++ HL Q ++ L+ + L YG +
Sbjct: 502 LIQELDGHVLDCVCDQNGNHVIQKA-IECI--DTGHL-QFILRALRPQIHVLSAHPYGCR 557
Query: 410 HVYNFIKDC 418
+ I+ C
Sbjct: 558 VIQRAIEHC 566
Score = 42 (19.8 bits), Expect = 9.4e-16, Sum P(2) = 9.4e-16
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 4 SRTHPVSETQLNNLSLSFENLQVNDPSYSSFNEIHPSPPVPLYPQSTWAVPSL 56
S ++P+ +L + V+ P+ S N H P P QS A+PSL
Sbjct: 80 SYSNPIPSLTWLSLDGDSPDSLVSTPTAPSAN--HHGNPFPNGKQSIKAMPSL 130
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 217 (81.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 77/328 (23%), Positives = 153/328 (46%)
Query: 104 AQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLR 163
++D+ GS+ +Q+K+ + VF+ V ++ + + +V KF E +Q
Sbjct: 468 SKDQVGSRIIQQKIENASLEEKQLVFDEVVVAVHSLMTDVFGNYVLQKFFEHGTTEQKRI 527
Query: 164 ITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGS 223
+ +++ + ++ +G I+K ++++ +L L+ + + + + + G+
Sbjct: 528 LADKLSGH---ILSLTLQMYGCRVIQKAIESIELDKQIL-LIGELNGHIVQCVT-DQNGN 582
Query: 224 SVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLI 283
V+ +C+E+I H + FI + H LA H GC + ++ + IL +
Sbjct: 583 HVIQKCIEKIPTHLIQ--FIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDEL 640
Query: 284 SVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYR 343
A SL ++ GNYV+QHVLE P I L+G +LS K S V++ C+++
Sbjct: 641 MRCAVSLVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIYNLSQHKFASNVIEKCVQHG 700
Query: 344 ITVN--YIVEEFL--LNSDQ----IFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTK 395
T I+ E L NS + ++ D Y NYVIQ +++ + P + ++ +
Sbjct: 701 CTAERILIINEILGDANSPNSSNVLLKILKDPYANYVIQK-ILDIVEPAQRDM---IINR 756
Query: 396 LQQNLDSLR-FGYGKHVYNFIKDCDLQN 422
+Q + +L+ GKH+ + I+ N
Sbjct: 757 IQPFVPTLKKVTPGKHIISRIEKYSANN 784
>WB|WBGene00004244 [details] [associations]
symbol:puf-8 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0040022 "feminization of hermaphroditic
germ-line" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007140 "male meiosis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007283 GO:GO:0003723
GO:GO:0042127 GO:GO:0007140 GO:GO:0040027 GO:GO:0040020
GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00680000100664 EMBL:FO080733 PIR:T15717
RefSeq:NP_495523.3 ProteinModelPortal:Q09487 SMR:Q09487
DIP:DIP-27165N MINT:MINT-1110716 STRING:Q09487 PaxDb:Q09487
EnsemblMetazoa:C30G12.7 GeneID:174197 KEGG:cel:CELE_C30G12.7
UCSC:C30G12.7 CTD:174197 WormBase:C30G12.7 InParanoid:Q09487
OMA:KDSIFDE NextBio:882961 Uniprot:Q09487
Length = 535
Score = 206 (77.6 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 89/371 (23%), Positives = 167/371 (45%)
Query: 63 PNLSGT-SNPQYETITSSNFQTPLGFQANP--FQHCANS---GILL-LAQDEQGSQYLQE 115
P+ +G SNP E T+ + T ++ANP ++ S G LL A+D+ GS+++Q+
Sbjct: 157 PSATGIFSNPYREPTTTDDLLTR--YRANPAMMKNLKLSDIRGALLKFAKDQVGSRFIQQ 214
Query: 116 KLTSGDSRF-LDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQL 174
+L S RF D +F+ V +++ + + +V KF E E R+ D +
Sbjct: 215 ELASSKDRFEKDSIFDEVVSNADELVDDIFGNYVVQKFFEYGEERHWARLV------DAI 268
Query: 175 FVQASVDKFGSSSIRKLMKAVAN-RPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQI 233
+ F + R L KA+ PL ++ ++ + M + G+ VV + +E++
Sbjct: 269 IDRVPEYAFQMYACRVLQKALEKINEPLQIKILSQIRHVIHRCMKDQNGNHVVQKAIEKV 328
Query: 234 YHHNNKNDFIYQAALE--HCLY-LACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASL 290
+ FI LE + +Y ++ GC + ++ + K ++ I +
Sbjct: 329 SPQYVQ--FIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTKPVIGQIHKRFDEI 386
Query: 291 SRNFSGNYVVQHVLEL---EDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRITVN 347
+ N GNYVVQHV+E ED +I T + + + + K S V++ CL+ +
Sbjct: 387 ANNQYGNYVVQHVIEHGSEEDRMVIVT---RVSNNLFEFATHKYSSNVIEKCLEQGAVYH 443
Query: 348 --YIVEEFLLNSDQ----IFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLD 401
IV + + + ++ D+Y NYV+Q + + L+ ++ ++
Sbjct: 444 KSMIVGAACHHQEGSVPIVVQMMKDQYANYVVQKMFDQVTSEQ----RRELILTVRPHIP 499
Query: 402 SLR-FGYGKHV 411
LR F +GKH+
Sbjct: 500 VLRQFPHGKHI 510
>ZFIN|ZDB-GENE-081031-76 [details] [associations]
symbol:pum2 "pumilio homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 ZFIN:ZDB-GENE-081031-76
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01062788 EMBL:CABZ01062789
EMBL:CABZ01062790 EMBL:CU468963 IPI:IPI00864826
Ensembl:ENSDART00000086578 Bgee:F1R4Q6 Uniprot:F1R4Q6
Length = 1206
Score = 135 (52.6 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 35/158 (22%), Positives = 75/158 (47%)
Query: 104 AQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLR 163
+QD+ GS+++Q+KL S VF + + +Q++ + + +V KF E + DQ L
Sbjct: 851 SQDQHGSRFIQQKLERATSAERQMVFGEILQAAYQLMTDVFGNYVIQKFFEFGSADQKLA 910
Query: 164 ITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGS 223
+ +I + ++ +G I+K ++++++ ++ +++ L + + G+
Sbjct: 911 LATRIRGH---VLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLKCVKDQNGN 967
Query: 224 SVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGC 261
VV +C+E + FI A L+ H GC
Sbjct: 968 HVVQKCIECV--QPQALQFIIDAFQGQVFVLSTHPYGC 1003
Score = 132 (51.5 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 38/123 (30%), Positives = 64/123 (52%)
Query: 296 GNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY--RITVNYIVEEF 353
GNYV+QHVLE P I +RG + LS K S VV+ C+ + R +++E
Sbjct: 1062 GNYVIQHVLEHGRPEDKSKIVAEVRGKVLALSQHKFASNVVEKCVIHSSRAERALLIDEV 1121
Query: 354 LLNSD----QIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLR-FGYG 408
D ++ + D+Y NYV+Q +I+ P + ++ K++ ++ +LR + YG
Sbjct: 1122 CCQKDGPHSALYTMMKDQYANYVVQR-MIDMAEPAQRKI---IMHKIRPHIATLRKYTYG 1177
Query: 409 KHV 411
KH+
Sbjct: 1178 KHI 1180
Score = 56 (24.8 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 358 DQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRFGYGKHVYNFIKD 417
D +F+ D+YGNYVIQ L E RP ++V +++ + L K N ++
Sbjct: 1054 DLLFK---DQYGNYVIQHVL-EHGRPED---KSKIVAEVRGKV--LALSQHKFASNVVEK 1104
Query: 418 C 418
C
Sbjct: 1105 C 1105
Score = 40 (19.1 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 42 PVPLYPQSTWAVPSLSGRSTVPNLSGTSNPQYETITSSNFQTPLGFQANP 91
P+ + P + A + S + ++SG +N Y ++ Q P Q P
Sbjct: 579 PLLINPAAAQAAAAASVSGSGNSMSGPANGLYRSMACQQPQQPQPQQQLP 628
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 207 (77.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 95/422 (22%), Positives = 180/422 (42%)
Query: 1 METSRTHPVSETQLNNLSLSFENLQVNDPSYSSFNEIHPSPPVPLYP--QSTWAVPSLSG 58
M+ T+ VS NN ++ E+ V+D P L S + S S
Sbjct: 365 MDNDPTN-VSTKNRNNQTVG-EHPYVDDNKKKKKGPAKPKEKATLGKTVNSFFGSHSTSN 422
Query: 59 RSTVP---NLSGTSNPQYETITSSNFQTPLGFQANPFQHCANS-GIL-LLAQDEQGSQYL 113
S VP L+G + + + + Q N H G L + +D+ G +YL
Sbjct: 423 YSKVPLSAKLTGEKSDDLSNLLKNKGKKKS--QDNQIPHLVGFLGHLSTICKDQYGCRYL 480
Query: 114 QEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQ 173
Q+ L F + + Q++ + + ++ K + +Q L + + +
Sbjct: 481 QKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYASREQKLSM---LNGIGE 537
Query: 174 LFVQASVDKFGSSSIRKLM-KAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQ 232
V + +G+ S++ ++ K +N + L++K + L G+ V+ +C+ +
Sbjct: 538 GIVDICSNLYGTRSMQNIIDKLTSNEQ--ISLLLKIIIPSLTTLACDNNGTHVLQKCIAK 595
Query: 233 IYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSR 292
K + ++ + E+ + LA + GC + +D G +++++ I + L +
Sbjct: 596 F--PPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSIIKSCLLLVQ 653
Query: 293 NFSGNYVVQHVLELE-DPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRI--TVNYI 349
N GNY+VQHVLEL PY E I G+ LSL K S ++ C++ T +
Sbjct: 654 NAYGNYLVQHVLELNIQPYT-ERIIEKFFGNICKLSLQKFSSNAIEQCIRTASPSTREQM 712
Query: 350 VEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRFGYGK 409
++EFL + I ++ D Y NYV+Q L + L R ++ + + + R +G+
Sbjct: 713 LQEFL-SFPNIEQLLDDCYANYVMQRFL-NVADESQKFLILRSISHVIPKIQNTR--HGR 768
Query: 410 HV 411
H+
Sbjct: 769 HI 770
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 188 (71.2 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 80/348 (22%), Positives = 159/348 (45%)
Query: 20 SFENLQVNDPSYSSFNE---IHPSPPVPLYPQSTWAVPSLSGRSTVPNLSGTSNPQYETI 76
S + V PS S N I +P + P ++ + + S + + G N + +
Sbjct: 138 SSHDFTVVAPSNSGVNTSSLIMETPSSSVTPAAS--LRNFSNSNNAASKCGVDNSSFG-L 194
Query: 77 TSSNFQTPLGFQANPFQHCANSGILLLAQDEQGSQYLQEKL-TSGDSRFL-DKVFNVVSE 134
+SS + + A P + + + LA D+ G ++LQ+KL T +S + D ++ +
Sbjct: 195 SSSTSSSMVEISALPLR---DLDYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKP 251
Query: 135 FTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKA 194
F +I + + ++ K + +Q + +Q T +F Q S++++G+ S++K++
Sbjct: 252 FFLDLILDPFGNYLVQKLCDYLTAEQKT-LLIQ-TIYPNVF-QISINQYGTRSLQKIIDT 308
Query: 195 VANRPPLLDLVMKALKRLFR------LLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAAL 248
V N + DL++K + F L+ G+ V+ +C+ + +K FI A +
Sbjct: 309 VDNEVQI-DLIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKF--SPSKFGFIIDAIV 365
Query: 249 E--HCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLEL 306
E + + ++ H+ GC + + + +I I L + GNY++Q +L++
Sbjct: 366 EQNNIITISTHKHGCCVLQKLLSVCTLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDI 425
Query: 307 E--DPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLK--YRITVNYIV 350
+ D YL+ + L LS K S VV+ +K +RI +IV
Sbjct: 426 KELDFYLLAELFNRLSNELCQLSCLKFSSNVVEKFIKKLFRIITGFIV 473
Score = 59 (25.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 350 VEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRFGYGK 409
++ F +N + + R D +GNY +QT L++ + L + + + QN S YG
Sbjct: 502 IDIFTVNLNVLIR---DNFGNYALQT-LLDVKNYSPLLAYNKNSNAIGQNSSST-LNYG- 555
Query: 410 HVYNFIKDCDLQ 421
NF D L+
Sbjct: 556 ---NFCNDFSLK 564
>WB|WBGene00004245 [details] [associations]
symbol:puf-9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0002009 GO:GO:0005737 GO:GO:0040010 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0040017 GO:GO:0003730 GO:GO:0006402 EMBL:FO081143
eggNOG:COG5099 HSSP:Q14671 GeneTree:ENSGT00680000100664 PIR:T26218
RefSeq:NP_508980.2 ProteinModelPortal:Q23191 SMR:Q23191
STRING:Q23191 PaxDb:Q23191 EnsemblMetazoa:W06B11.2.1
EnsemblMetazoa:W06B11.2.2 GeneID:180850 KEGG:cel:CELE_W06B11.2
UCSC:W06B11.2 CTD:180850 WormBase:W06B11.2 HOGENOM:HOG000020400
InParanoid:Q23191 OMA:TIKPHIA NextBio:911254 Uniprot:Q23191
Length = 703
Score = 197 (74.4 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 81/381 (21%), Positives = 175/381 (45%)
Query: 46 YPQSTWAVPSLSGRST--VPNLSGTSNPQYETITSSNFQTPLGFQANPFQHCANSGILLL 103
+ Q ++ +P + PN S + P+ N QTP Q N+ ++
Sbjct: 298 WSQRSFGMPQQQAQQNGLPPNFS-QNPPRRRGPEDPNGQTP-----KTLQDIKNN-VIEF 350
Query: 104 AQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLR 163
A+D+ GS+++Q+KL R +F V E +++ + + +V KF E N +Q R
Sbjct: 351 AKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNYVIQKFFEFGNNEQ--R 408
Query: 164 ITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGS 223
L T + + ++ ++ +G I+K ++ V + ++ ++ + + G+
Sbjct: 409 NQLVGTIRGNV-MKLALQMYGCRVIQKALEYVEEK--YQHEILGEMEGQVLKCVKDQNGN 465
Query: 224 SVVLQCLEQIYHHNNKNDFIYQAALEHC---LY-LACHEQGCINMNNFIDEMKGPRRKQI 279
V+ + +E++ + FI A ++ +Y L+ H GC + ++ +++ +
Sbjct: 466 HVIQKVIERV--EPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYCNEEQKQPV 523
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFS-LRGHYIDLSLTKCGSFVVQN 338
L + ++ L + GNYV+QHV+E P E I + + + K S V++
Sbjct: 524 LDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFASNVIEK 583
Query: 339 CLKY--RITVNYIVEEFLLN----SDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRL 392
CL + N I+++ + S + ++ D + NYV+Q +++ P H++
Sbjct: 584 CLTFGGHAERNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQK-MLDVADPQ----HRKK 638
Query: 393 VT-KLQQNLDSLR-FGYGKHV 411
+T ++ ++ +LR + +GKH+
Sbjct: 639 ITLTIKPHIATLRKYNFGKHI 659
Score = 125 (49.1 bits), Expect = 0.00017, P = 0.00017
Identities = 58/251 (23%), Positives = 120/251 (47%)
Query: 176 VQASVDKFGSSSIR-KLMKA-VANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQI 233
++ + D+ GS I+ KL +A + ++ + V++ + L MT + V+Q +
Sbjct: 348 IEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEEL-----MTDVFGNYVIQKFFEF 402
Query: 234 YHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRN 293
++ +N + + + LA GC + ++ ++ + +IL + ++
Sbjct: 403 GNNEQRNQLV-GTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCVKD 461
Query: 294 FSGNYVVQHVLELEDP----YLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRITVNYI 349
+GN+V+Q V+E +P ++I+ + + LS+ G V+Q L+Y N
Sbjct: 462 QNGNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEY---CNEE 518
Query: 350 VEEFLLNSDQIF--RVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRFGY 407
++ +L++ QI ++ D+YGNYVIQ +IE P+ +++V + + D L+F
Sbjct: 519 QKQPVLDALQIHLKQLVLDQYGNYVIQH-VIEHGSPSD---KEQIVQDVISD-DLLKFAQ 573
Query: 408 GKHVYNFIKDC 418
K N I+ C
Sbjct: 574 HKFASNVIEKC 584
>CGD|CAL0000998 [details] [associations]
symbol:PUF3 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0051646 "mitochondrion
localization" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000998 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 EMBL:AACQ01000198
EMBL:AACQ01000197 RefSeq:XP_711443.1 RefSeq:XP_711460.1
ProteinModelPortal:Q59P09 GeneID:3646939 GeneID:3646950
KEGG:cal:CaO19.1795 KEGG:cal:CaO19.9361 Uniprot:Q59P09
Length = 929
Score = 180 (68.4 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 60/262 (22%), Positives = 127/262 (48%)
Query: 105 QDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIE--TCNEDQLL 162
+D+ GS+++Q+KL + +FN + E +++++ + + +V K+ E T + Q+L
Sbjct: 594 KDQHGSRFIQQKLPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKYFEYGTTTQKQVL 653
Query: 163 RITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPG 222
+ I +L S+ +G +++ ++A+ N L +++ LK + + G
Sbjct: 654 -LESMIGHIHEL----SLQMYGCRVVQRALEAIDNEGQLR--IIEELKDHILICCKDQNG 706
Query: 223 SSVVLQCLEQIYHHNNKNDFIYQAALEHCLY-LACHEQGCINMNNFIDEMKGPRRKQILY 281
+ V+ + +E+I + + +L++ +Y L+ H GC + ++ +K IL
Sbjct: 707 NHVIQKSIEKIKPFSQIRYIL--TSLDNQIYHLSTHPYGCRVIQRLLEYSDIDDQKLILS 764
Query: 282 LISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLK 341
++ L + GNYV+QH+LE E I + G + S K S V++ C+K
Sbjct: 765 QLNNFLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSKHKFASNVIEKCIK 824
Query: 342 YRITVNY---IVEEFLLNSDQI 360
+ +N I+ E +L ++ I
Sbjct: 825 FG-DINQRKRILHEVMLGNETI 845
Score = 108 (43.1 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 47/205 (22%), Positives = 90/205 (43%)
Query: 176 VQASVDKFGSSSIR-KLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIY 234
++ + D+ GS I+ KL +A + + + + LM G+ V+ + E Y
Sbjct: 590 IEFTKDQHGSRFIQQKLPEATEEEK---ETIFNEIWEISYELMTDVFGNYVIQKYFE--Y 644
Query: 235 HHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNF 294
+ + ++ + H L+ GC + ++ + + +I+ + + ++
Sbjct: 645 GTTTQKQVLLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLRIIEELKDHILICCKDQ 704
Query: 295 SGNYVVQHVLELEDPYL-IETICFSLRGHYIDLSLTKCGSFVVQNCLKYR-ITVNYIVEE 352
+GN+V+Q +E P+ I I SL LS G V+Q L+Y I ++
Sbjct: 705 NGNHVIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEYSDIDDQKLILS 764
Query: 353 FLLNSDQIFRVACDKYGNYVIQTAL 377
L N ++ + D+YGNYVIQ L
Sbjct: 765 QLNNF--LYYLILDQYGNYVIQHIL 787
Score = 56 (24.8 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 39 PSPPVPLYPQ-STWAVPSLSGRSTVPNLSGTSNPQYETITSSNFQT 83
P PP+P Q + PS G+ST SG S T TS + Q+
Sbjct: 476 PPPPLPQQQQPQQQSAPSSQGKST----SGVSGSSTSTSTSHHSQS 517
Score = 47 (21.6 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 366 DKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQ--NLDSLRFGYGKHVYNFI 415
D++GNYVIQ L+E + L L+ K+++ +L S +++ N I
Sbjct: 868 DQFGNYVIQK-LVEAFDGDERKL---LIIKIKKCLSLSSNNLASIRNIRNII 915
Score = 45 (20.9 bits), Expect = 5.7e-11, Sum P(3) = 5.7e-11
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 30 SYSSFNEIHPSPPVPLYPQSTWAVP---SLSGRSTVPN---LSGTSNPQYETITSSNFQT 83
S +SF HP P +Y S VP +L G ++ P L PQ ++ SS ++
Sbjct: 440 SPASFM-FHPFNPYSMYQSSPPLVPPEAALGGMASPPPPPPLPQQQQPQQQSAPSSQGKS 498
Query: 84 PLG 86
G
Sbjct: 499 TSG 501
Score = 40 (19.1 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 39 PSPPVPLYPQSTWAVPSLSGRSTVPNLSGTSN 70
P PP+P+ PQ + P G ++ N SG +N
Sbjct: 297 PIPPLPMPPQGFY--PPRGGNAS--N-SGGAN 323
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 192 (72.6 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 82/325 (25%), Positives = 157/325 (48%)
Query: 98 SGILLLAQDEQGSQYLQEKLTSG-----DSRF--LDKVFNVVSEFTFQIICNQYARFVFG 150
S IL LA+D+ G ++LQ+K+ R + +FN + +++I + + ++
Sbjct: 284 SEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIYSHVYELIVDPFGNYLIQ 343
Query: 151 KFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALK 210
K I CNE L + ++I Q LF Q S+++ G+ +++K++ ++ N L L++K LK
Sbjct: 344 KLIVYCNESNL-DLLMEIL-QYNLF-QISINQHGTRALQKIIDSL-NNSHQLGLLIKGLK 399
Query: 211 RLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDE 270
L+ G+ V+ + L + + FIY + ++ +A H+ GC + ++
Sbjct: 400 PYIIELIKDLNGNHVIQKILNK--YEPPDCQFIYDSIIDDLYIVATHKHGCCVLQKCLNH 457
Query: 271 MK----GPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDL 326
+ G + IL N L + GNYV+Q+++ + ++ I F + ++++
Sbjct: 458 VTLQQLGEFSRAILKF--ENFKLLINDQFGNYVLQYLISINS---LD-INFQIFQNFVNF 511
Query: 327 SLT-----KCGSFVVQNCLK--YR---ITVNYIVEEF-----LLNSDQIFRVACDKYGNY 371
++ K S VV+ LK Y + V++ +F +L SD + D YGNY
Sbjct: 512 GISNLCNLKFSSNVVEKFLKNCYANESVNVSFSNLKFELIYIILVSDLNVLIN-DPYGNY 570
Query: 372 VIQTALIETMRPNSLHLHQRLVTKL 396
VIQT +I+ M ++ + KL
Sbjct: 571 VIQT-MIDIMVNPQVNYQNNNIDKL 594
Score = 133 (51.9 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 60/280 (21%), Positives = 129/280 (46%)
Query: 151 KFIETCNEDQLLRIT-LQITSQDQLFVQASVDKFGSSSIRKLM--KAVAN---RPPLLDL 204
+F + +++ L I L +T ++ + D++G ++K + V N R ++
Sbjct: 261 RFPQKIDKEYLASINKLPLTQLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEI 320
Query: 205 VMKAL-KRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLY-LACHEQGCI 262
+ + ++ L++ P + ++Q L I + N N + L++ L+ ++ ++ G
Sbjct: 321 IFNQIYSHVYELIV--DPFGNYLIQKL--IVYCNESNLDLLMEILQYNLFQISINQHGTR 376
Query: 263 NMNNFIDEMKGPRRKQILYL-ISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRG 321
+ ID + + +L + L ++ +GN+V+Q +L +P + I S+
Sbjct: 377 ALQKIIDSLNNSHQLGLLIKGLKPYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIID 436
Query: 322 HYIDLSLTKCGSFVVQNCLKYRITVNYIVE--EFLLNSDQIFRVACDKYGNYVIQTAL-I 378
++ K G V+Q CL + +T+ + E +L + + D++GNYV+Q + I
Sbjct: 437 DLYIVATHKHGCCVLQKCLNH-VTLQQLGEFSRAILKFENFKLLINDQFGNYVLQYLISI 495
Query: 379 ETMRPNSLHLHQRLVTKLQQNLDSLRFGYGKHVYNFIKDC 418
++ N + Q V NL +L+F V F+K+C
Sbjct: 496 NSLDIN-FQIFQNFVNFGISNLCNLKFS-SNVVEKFLKNC 533
>TAIR|locus:2035312 [details] [associations]
symbol:PUM22 "pumilio 22" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AC023628 IPI:IPI00518100
PIR:F86144 RefSeq:NP_171648.1 UniGene:At.51446
ProteinModelPortal:Q9LNI2 EnsemblPlants:AT1G01410.1 GeneID:837547
KEGG:ath:AT1G01410 TAIR:At1g01410 eggNOG:NOG237520
HOGENOM:HOG000153055 InParanoid:Q9LNI2 OMA:MTHERGY PhylomeDB:Q9LNI2
ProtClustDB:CLSN2912781 Genevestigator:Q9LNI2 Uniprot:Q9LNI2
Length = 361
Score = 163 (62.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 82/337 (24%), Positives = 146/337 (43%)
Query: 92 FQHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGK 151
F H +L+L+ D+ G L++ +T D D+ +++++ + + +
Sbjct: 25 FCHITYRHLLVLSSDDNGCVILKKVITIADDFLKDEFLDLIAQHAHSLSMHDLGISLIQH 84
Query: 152 FIETCNEDQLLRITLQITSQDQLF--VQASVDKFGSSSIRKLMKAVANRPPLLDLVMKAL 209
+E L T + T D+ + A D+ S+S+ A+ L L K +
Sbjct: 85 VLE-------LDFTKKTTQDDKRLHELMAEFDEVLSTSV------TADVDKLHKLASKLM 131
Query: 210 --KRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNF 267
LF ++T+ GS +++Q + + + I + + + + G M
Sbjct: 132 LDSDLFFEFVITRRGS-LMIQII--LGKSEEVDQVILAGVKQRFIDVTTNFYGYRIMIQT 188
Query: 268 IDEMK--GPRR--KQILYLISVNAASLSRNFS-GNYVVQHVLELEDPYLIETICFSLRGH 322
I K G + QIL LI V+A L+++ GN QH + L I L+ H
Sbjct: 189 IKVFKKRGDLKVYDQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSH 248
Query: 323 YIDLSLTKCGSFVVQNCLKYRIT----VNYIVEEFLLNSDQIFRVACDKYGNYVIQTALI 378
YI+LS K GS +V+ + RI+ V ++E + D + R+A D+YGN +++ L
Sbjct: 249 YIELSFLKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGNNILKKFLA 308
Query: 379 ETMRPNSLHLHQRLVTKLQQNLDSLRFGYGKHVYNFI 415
+ + LV KL LDSLR G+++ I
Sbjct: 309 -LAKEHKEDFFGDLVDKLNPLLDSLRGTLGENIVAII 344
>POMBASE|SPAC4G9.05 [details] [associations]
symbol:mpf1 "meiotic PUF family protein 1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPAC4G9.05 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003729 eggNOG:COG5099
OrthoDB:EOG4QNR4B EMBL:AB248102 PIR:T38864 RefSeq:NP_593687.1
ProteinModelPortal:Q10238 EnsemblFungi:SPAC4G9.05.1 GeneID:2543134
KEGG:spo:SPAC4G9.05 NextBio:20804161 Uniprot:Q10238
Length = 581
Score = 160 (61.4 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 84/373 (22%), Positives = 160/373 (42%)
Query: 58 GRSTVPNL-----SGTSNPQYETITSSNFQTPLGFQANPFQHCANSGILLLAQDEQGSQY 112
G ST NL +GT+ P + S +T L + A + A ++ D+ S
Sbjct: 214 GESTNKNLFYEFPNGTTEPFEKNSVHSGKET-LQYSATISKWKAMIEQIIFQNDQAASLS 272
Query: 113 LQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQD 172
LQ++L + D + N + F+ ++ N++ F+ K E E QL + +
Sbjct: 273 LQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSYFLKKHV 332
Query: 173 QLFVQASVDKFGSSSIRKLMKAVANR------PPLLDLVMKALKRLFRLLMMTKPGSSVV 226
+ + S+D FGS ++K ++ R L++ + L + + K +
Sbjct: 333 K---ELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFETRR 389
Query: 227 LQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVN 286
++ I+ H NK Q L ++ E G + + + K ++ L I N
Sbjct: 390 KSLVDGIFDHFNKK---MQGKW---LQVSVSEMGSLVVQTIFENCKEKDKRTCLDEIINN 443
Query: 287 AASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY-RIT 345
+ GN+V+QH++E + I SL S + S VV+ L+ +T
Sbjct: 444 MDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVCHVT 503
Query: 346 V-NYIVEEFLLNSDQ---IF--RVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQN 399
+ V+E ++ IF +A ++YGNY++Q L++ P+ ++L + L+++
Sbjct: 504 FFDRYVKEITTPQNELPTIFLQEIASNQYGNYIVQY-LLQVATPSQINL---MAEHLKKH 559
Query: 400 LDSLR-FGYGKHV 411
+ SLR YG+ +
Sbjct: 560 MVSLRGHKYGQRI 572
>POMBASE|SPCC1682.08c [details] [associations]
symbol:SPCC1682.08c "RNA-binding protein Mcp2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPCC1682.08c GO:GO:0007126 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 eggNOG:COG5099
EMBL:AB189990 PIR:T41065 RefSeq:NP_587801.1
ProteinModelPortal:O74438 EnsemblFungi:SPCC1682.08c.1
GeneID:2539137 KEGG:spo:SPCC1682.08c OMA:FNDSANG OrthoDB:EOG4QNR4B
NextBio:20800309 Uniprot:O74438
Length = 703
Score = 148 (57.2 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 93/428 (21%), Positives = 185/428 (43%)
Query: 16 NLSLSFENLQVND-----P-SYSSFNEIHPSPPVPLYP--QSTWAVPSLSGRSTVPNLSG 67
NLS S NL N P S SS S V QS W + S S +P +
Sbjct: 281 NLSASTNNLSTNTSGTLKPYSLSSSRSSSYSKGVNSAASLQSIWETMNNSNPSVIPESTS 340
Query: 68 TSNP--QYETITSSNFQTPLGFQANPFQHCANSGILLLAQDEQGSQYLQEKL--TSGDSR 123
+ P +Y I+ N + N ++++ D+Q S +LQ+KL +S D +
Sbjct: 341 SREPAARYRKISERNAV----YDWNVI-----IDKIIVSNDQQSSIFLQQKLKISSYDMK 391
Query: 124 FLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKF 183
+ V +++S+ ++ N++ F+ + E Q+ ++ + ++ + D F
Sbjct: 392 -QNIVDSIISQI-HPLMLNRFGNFLVQRCFEHGTAPQIRQMGSAMLGN---MLKLATDPF 446
Query: 184 GSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLE-QIYHHN-NKND 241
G ++K + V L +M L + +M V + E Q Y + N +
Sbjct: 447 GCHVVQKAIDNVTEDIKLA--MMDELFLTIDVTIMHHYACHVWQKLFETQWYEYPVNVMN 504
Query: 242 FIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQ 301
+ A +A E G + + N + +++ + I + ++R GN+VVQ
Sbjct: 505 RVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQ 564
Query: 302 HVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLK------YRITVNYIVEEFLL 355
H++E ++ + +L ++ S+ + S V++ +K + + I +
Sbjct: 565 HMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITNARVD 624
Query: 356 NSDQ-IFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRFG-YGKHVYN 413
+ Q + +A D+YGNY+IQ +I+ +P +L ++T +++++ SLR YG+ V
Sbjct: 625 RTRQPLIDIASDQYGNYLIQQ-IIQLGQPAEKNL---VITHIKKHMVSLRGSKYGQKVAY 680
Query: 414 FIKDCDLQ 421
++ + Q
Sbjct: 681 LVEKWNSQ 688
>ASPGD|ASPL0000000865 [details] [associations]
symbol:AN6587 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000110 eggNOG:COG5099 OrthoDB:EOG4RR9RJ
RefSeq:XP_664191.1 ProteinModelPortal:Q5AYP3
EnsemblFungi:CADANIAT00007365 GeneID:2870653 KEGG:ani:AN6587.2
HOGENOM:HOG000201252 OMA:SHKSSPQ Uniprot:Q5AYP3
Length = 849
Score = 154 (59.3 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 67/289 (23%), Positives = 130/289 (44%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ + D+ GS++LQ+K+ + +S D+VF + Q+ + + +V K E N+
Sbjct: 464 IVEFSGDQYGSRFLQQKIETANSDEKDRVFREILPNFLQLAQDIFGNYVAQKLYEHGNQT 523
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q +T + S+ V+ S+ +G ++K ++ V LV + ++ + +
Sbjct: 524 QKKMMTEDMRSK---VVKLSLSPYGCRVVQKALEHVLTDQQAW-LVREIQPQVLECVE-S 578
Query: 220 KPGSSVVLQCLEQIYHHNNKNDF-IYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQ 278
+ G+ V+ + E + K ++ +E + H GC + ++ + R+
Sbjct: 579 QHGNHVIQKVFEYVPTQYTKGLVDSFRGQVER---QSTHSYGCRVIQRMLEFCEDVDRRF 635
Query: 279 ILYLISVNAASLSRNFSGNYVVQHVL---ELED-PYLIETICFSLRGHYIDLSLTKCGSF 334
IL I A L + GNYV+QH++ E ED ++IE + L + S K S
Sbjct: 636 ILAEIRACAPRLIEDQYGNYVIQHIIQSGEEEDRSFMIEMVKQKLLWY----SKHKFASN 691
Query: 335 VVQNCLKYRITVNY--IVEEFLLNSD----QIFRVACDKYGNYVIQTAL 377
VV+ +++ I+ ++ Q+ + D+YGNYV Q L
Sbjct: 692 VVEKSIEFGNEAQRQDIITRLTAKTEGHETQLIELMADQYGNYVFQKVL 740
Score = 40 (19.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 59 RSTVPNLSGTSN--PQYETI---TSSNFQTPLGFQAN-----PFQHCANS--GILLLAQD 106
RST+ +SG+S+ P E+ N P Q N P Q+ +N G+L+ D
Sbjct: 43 RSTIEGISGSSSLLPSSESDGWDIRRNVPWPSRAQGNGMATSPVQNRSNDLGGVLVDGND 102
Query: 107 EQGSQYLQEKLTS 119
S Y + ++S
Sbjct: 103 --ASSYFTQSVSS 113
Score = 38 (18.4 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 1 METSRTHPVSETQLNNLSLSFENLQV----NDPSYSSFNEIHPSPPVPLYPQSTWAVPSL 56
+E++R+ ++++ +N+Q N ++SS N + P + A PS
Sbjct: 178 LESARSEHKGTMSMSSMQTLADNIQRGQIRNGYAHSSHNSTSNASQRPNHA----AFPSF 233
Query: 57 SGRSTVPNLSGTSNPQYETITS 78
+ PN G +NP E TS
Sbjct: 234 CSDTPFPNRYG-NNPT-ELSTS 253
>GENEDB_PFALCIPARUM|PFD0825c [details] [associations]
symbol:PFD0825c "RNA-binding protein of
pumilio/mpt5 family, putative" species:5833 "Plasmodium falciparum"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 144 (55.7 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 68/327 (20%), Positives = 135/327 (41%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I L + G +Y+ +KL + + + N + T + + Y +V + +E
Sbjct: 199 IYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEK 258
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
R T + ++ +G I+K ++++++ + K L+ +
Sbjct: 259 YKERFTDEFLKHTSFL---TLHTYGCRLIQKSLESLSDEYKCK--IFKELQEDLIKYICH 313
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ V+ +C+E + + D I E+ +L+ H GC + I E+ ++
Sbjct: 314 QNGNHVIQKCVEVL--PCSYIDIIINIIEEYLPFLSSHAYGCRIVQR-IYEIGNEQQINR 370
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + L +N GNYV+Q E D + I + LS K +++
Sbjct: 371 LNEQIIKKIHLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKI 430
Query: 340 L-----KYRITV-NYIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
L KY+ + IV + D I + D YGN+++Q L+ T R + ++
Sbjct: 431 LLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQK-LLTTCRKKERNF---II 486
Query: 394 TKLQQNLDSLRFG-YGKHVYNFIKDCD 419
+ +NLD L+ YGK++ I + +
Sbjct: 487 KTIIENLDKLKDETYGKYILRAINNLE 513
>UNIPROTKB|Q8I1R7 [details] [associations]
symbol:PFD0825c "RNA-binding protein of pumilio/mpt5
family, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 144 (55.7 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 68/327 (20%), Positives = 135/327 (41%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I L + G +Y+ +KL + + + N + T + + Y +V + +E
Sbjct: 199 IYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEK 258
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
R T + ++ +G I+K ++++++ + K L+ +
Sbjct: 259 YKERFTDEFLKHTSFL---TLHTYGCRLIQKSLESLSDEYKCK--IFKELQEDLIKYICH 313
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ V+ +C+E + + D I E+ +L+ H GC + I E+ ++
Sbjct: 314 QNGNHVIQKCVEVL--PCSYIDIIINIIEEYLPFLSSHAYGCRIVQR-IYEIGNEQQINR 370
Query: 280 LYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNC 339
L + L +N GNYV+Q E D + I + LS K +++
Sbjct: 371 LNEQIIKKIHLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKI 430
Query: 340 L-----KYRITV-NYIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLV 393
L KY+ + IV + D I + D YGN+++Q L+ T R + ++
Sbjct: 431 LLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQK-LLTTCRKKERNF---II 486
Query: 394 TKLQQNLDSLRFG-YGKHVYNFIKDCD 419
+ +NLD L+ YGK++ I + +
Sbjct: 487 KTIIENLDKLKDETYGKYILRAINNLE 513
>WB|WBGene00022257 [details] [associations]
symbol:puf-11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009792 GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000003 GO:GO:0003723 EMBL:FO081731
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
RefSeq:NP_741425.1 ProteinModelPortal:Q8IU00 SMR:Q8IU00
IntAct:Q8IU00 STRING:Q8IU00 PaxDb:Q8IU00 EnsemblMetazoa:Y73B6BL.38
GeneID:177406 KEGG:cel:CELE_Y73B6BL.38 UCSC:Y73B6BL.38 CTD:177406
WormBase:Y73B6BL.38 InParanoid:Q8IU00 OMA:HVVKCGG NextBio:896676
Uniprot:Q8IU00
Length = 505
Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 83/378 (21%), Positives = 161/378 (42%)
Query: 31 YSSFNEIHPSPPVPLYPQSTWAVPSLSGRSTVPNLSGTSNPQYET---ITSSNFQTPLGF 87
+S + P +PQ + L ++ PN +S Y+ I + + + +
Sbjct: 77 FSKWRTSTPMTTPARHPQQALRLIDLENNASSPNTLNSSTRSYKCTLPIWAGDGEGNVSD 136
Query: 88 QANPFQHCANSGILLLAQDEQGSQYLQEKL-TSGDSRFLDKVFNVVSE---FTFQIICNQ 143
AN ++ A D+ G ++LQE T D+ K+F + E + CN
Sbjct: 137 SVTLPDVLANDALVEFATDKNGCRFLQEHYPTESDNDIHQKLFRKLVEDRAIFLSLCCNM 196
Query: 144 YARFVFGKFIETCNEDQLLRITLQITSQ-DQLFVQASVDKFGSSSIRKLMKAVANRPPLL 202
+ F + +E N ++ +T + S L + S + +I+KL +A R L
Sbjct: 197 FGNFFVQRVLECSNTEEQEILTEHLASDLYNLCLDKSACRVIQLAIQKLDVHLATR---L 253
Query: 203 DLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQA-ALEHCLYLACHEQ-G 260
L ++ L RL + + G+ V+ + ++ + + F+ + A + L C ++ G
Sbjct: 254 SLELRDTY-LVRL-SIDQNGNHVIQKIVKTL--PVSAWSFVVEFFADDDNLIHVCQDKYG 309
Query: 261 CINMNNFIDEMKGPR-----RKQILYLISV------NAASLSRNFSGNYVVQHVLELEDP 309
C + + ++ + +++++ L S+ N + L+ N NYVVQHV++ D
Sbjct: 310 CRVIQSTVETLSSDTYAECYQQRVVLLRSLMSGVTRNCSQLASNEFANYVVQHVIKCGDA 369
Query: 310 YLI--ETICFS-LRGHYIDLSLTKCGSFVVQ---NCLKYRIT---VNYIVEEFL----LN 356
+ + I L + + +S K S VV+ C R+ +N I E ++ N
Sbjct: 370 MAVYRDVIIEQCLLQNLLSMSQEKYASHVVEVAFGCAPCRLAAEMMNEIFEGYIPHPDTN 429
Query: 357 SDQIFRVACDKYGNYVIQ 374
D + + +YGNYV+Q
Sbjct: 430 RDALDILLFHQYGNYVVQ 447
>WB|WBGene00004239 [details] [associations]
symbol:puf-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0035046 "pronuclear
migration" evidence=IMP] [GO:0009992 "cellular water homeostasis"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 75/314 (23%), Positives = 141/314 (44%)
Query: 96 ANSGILLLAQDEQGSQYLQEKL-TSGDSRFLDKVFNVVSE--FTFQIIC-NQYARFVFGK 151
AN ++ A D+ G ++LQE T D+ K+F + E F +C N + F +
Sbjct: 142 ANDALVEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQR 201
Query: 152 FIETCNEDQLLRITLQI-TSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALK 210
+E N ++ +T + T L + S + +I+KL +A R L L ++
Sbjct: 202 VLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATR---LSLELRDT- 257
Query: 211 RLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDE 270
L RL + + G+ V+ + ++ + + + A ++ +++ + GC + + ++
Sbjct: 258 HLVRL-SIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVET 316
Query: 271 MKGPRRKQ-----ILYLISV------NAASLSRNFSGNYVVQHVLELEDPYLI-ETICFS 318
+ + Q ++ L S+ N L+ N NYVVQHV++ D + I
Sbjct: 317 LSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIIIE 376
Query: 319 --LRGHYIDLSLTKCGSFVVQ---NCLKYRIT---VNYIVEEFL----LNSDQIFRVACD 366
L + + +S K S VV+ C YR+ +N I E ++ N D + +
Sbjct: 377 QCLLQNLLSMSQEKYASHVVEVAFECAPYRLVAEMMNEIFEGYIPHPDTNRDALDILLFH 436
Query: 367 KYGNYVIQTALIET 380
+YGNYV+Q +I+T
Sbjct: 437 QYGNYVVQQ-MIQT 449
>UNIPROTKB|Q9U2G4 [details] [associations]
symbol:puf-3 "Protein PUF-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 75/314 (23%), Positives = 141/314 (44%)
Query: 96 ANSGILLLAQDEQGSQYLQEKL-TSGDSRFLDKVFNVVSE--FTFQIIC-NQYARFVFGK 151
AN ++ A D+ G ++LQE T D+ K+F + E F +C N + F +
Sbjct: 142 ANDALVEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQR 201
Query: 152 FIETCNEDQLLRITLQI-TSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALK 210
+E N ++ +T + T L + S + +I+KL +A R L L ++
Sbjct: 202 VLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATR---LSLELRDT- 257
Query: 211 RLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDE 270
L RL + + G+ V+ + ++ + + + A ++ +++ + GC + + ++
Sbjct: 258 HLVRL-SIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVET 316
Query: 271 MKGPRRKQ-----ILYLISV------NAASLSRNFSGNYVVQHVLELEDPYLI-ETICFS 318
+ + Q ++ L S+ N L+ N NYVVQHV++ D + I
Sbjct: 317 LSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIIIE 376
Query: 319 --LRGHYIDLSLTKCGSFVVQ---NCLKYRIT---VNYIVEEFL----LNSDQIFRVACD 366
L + + +S K S VV+ C YR+ +N I E ++ N D + +
Sbjct: 377 QCLLQNLLSMSQEKYASHVVEVAFECAPYRLVAEMMNEIFEGYIPHPDTNRDALDILLFH 436
Query: 367 KYGNYVIQTALIET 380
+YGNYV+Q +I+T
Sbjct: 437 QYGNYVVQQ-MIQT 449
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 139 (54.0 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 50/249 (20%), Positives = 116/249 (46%)
Query: 101 LLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQ 160
L +D+ GS+++Q +L + + + +FN + + ++ + + +V KF E ++ Q
Sbjct: 544 LEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQ 603
Query: 161 LLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTK 220
+ Q + Q S+ + I+K ++ + + + +LV++ + +++ +
Sbjct: 604 KNTLVDQFKGNMK---QLSLQMYACRVIQKALEYIDSNQRI-ELVLELSDSVLQMIK-DQ 658
Query: 221 PGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQIL 280
G+ V+ + +E I K FI + H +L+ H GC + ++ ++ IL
Sbjct: 659 NGNHVIQKAIETI--PIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESIL 716
Query: 281 YLISVNAASLSRNFSGNYVVQHVLELEDPY-------LIETICFSLRGHYIDLSLTKCGS 333
+ L ++ GNYV+Q+VL+ +D + + + I ++ + ++ S K S
Sbjct: 717 NELKDFIPYLIQDQYGNYVIQYVLQ-QDQFTNKEMVDIKQEIIETVANNVVEYSKHKFAS 775
Query: 334 FVVQNCLKY 342
VV+ + Y
Sbjct: 776 NVVEKSILY 784
Score = 122 (48.0 bits), Expect = 0.00048, P = 0.00048
Identities = 36/106 (33%), Positives = 55/106 (51%)
Query: 277 KQILYL-ISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFV 335
K++++ I +A LS + GNYV+Q E T+ +G+ LSL V
Sbjct: 568 KEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRV 627
Query: 336 VQNCLKYRITVNYIVEEFLLNSDQIFRVACDKYGNYVIQTALIETM 381
+Q L+Y I N +E L SD + ++ D+ GN+VIQ A IET+
Sbjct: 628 IQKALEY-IDSNQRIELVLELSDSVLQMIKDQNGNHVIQKA-IETI 671
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 123 (48.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 46/221 (20%), Positives = 102/221 (46%)
Query: 100 ILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNED 159
I+ +QD+ GS+++Q KL VFN + + +Q++ + + +V KF E + +
Sbjct: 4 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 63
Query: 160 QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219
Q L + +I + ++ +G I+K ++ + + +++ +++ L +
Sbjct: 64 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 120
Query: 220 KPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQI 279
+ G+ VV +C+E + + + FI A + + G + + ++ + + +I
Sbjct: 121 QNGNHVVQKCIECVQPQSLQ--FIIDA------FKGQDQYGNYVIQHVLEHGRPEDKSKI 172
Query: 280 LYLISVNAASLSRN-FSGNYV---VQHVLELEDPYLIETIC 316
+ I N LS++ F+ N V V H E LI+ +C
Sbjct: 173 VAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVC 213
Score = 119 (46.9 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 33/119 (27%), Positives = 58/119 (48%)
Query: 270 EMKGPRRKQILYLISVNAA-SLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSL 328
E P +Q+++ + AA L + GNYV+Q E + +RGH + L+L
Sbjct: 22 ERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLAL 81
Query: 329 TKCGSFVVQNCLKYRITVNYIVEEFLLNSD-QIFRVACDKYGNYVIQTALIETMRPNSL 386
G V+Q L++ + ++ E + D + + D+ GN+V+Q IE ++P SL
Sbjct: 82 QMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKC-IECVQPQSL 139
>WB|WBGene00004241 [details] [associations]
symbol:puf-5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0035188
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477
GO:GO:0003723 GO:GO:0000910 EMBL:Z49967 GO:GO:0043186
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
PIR:T22634 RefSeq:NP_495814.1 ProteinModelPortal:Q20757 SMR:Q20757
STRING:Q20757 PaxDb:Q20757 EnsemblMetazoa:F54C9.8 GeneID:174373
KEGG:cel:CELE_F54C9.8 UCSC:F54C9.8 CTD:174373 WormBase:F54C9.8
InParanoid:Q20757 OMA:MISICIS NextBio:883756 Uniprot:Q20757
Length = 553
Score = 127 (49.8 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 80/337 (23%), Positives = 146/337 (43%)
Query: 71 PQYETITSSNFQTPLGFQANPFQHCANSGILLLAQDEQGSQYLQEKLTSG-DSRFLDKVF 129
P + S N + L Q +N ++ A D G ++L+ D+ +F
Sbjct: 128 PAWAVDNSGNIRDDLTLQ----DVVSNGSLIDFAMDRTGVKFLERHFPEDHDNEMHFVLF 183
Query: 130 NVVSE--FTFQIICNQYA-RFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFG-- 184
+ ++E F +C A F+ KF+E D+ R+ ++ D ++ +DKF
Sbjct: 184 DKLTEQGAVFTSLCRSAAGNFIIQKFVEHATLDEQERLVRKMC--DNGLIEMCLDKFACR 241
Query: 185 --SSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDF 242
SI+K ++A + LV K + L L + T + VLQ + ++ + + F
Sbjct: 242 VVQMSIQKFDVSIA-----MKLVEK-ISSLDFLPLCTDQCAIHVLQKVVKLLPISAWSFF 295
Query: 243 IYQAALEHCLYLACHEQ-GCINMNNFIDEMK-GPR------RKQILY--LISV--NAASL 290
+ + L C ++ GC + ID++ P+ R Q+L+ + SV N L
Sbjct: 296 VKFLCRDDNLMTVCQDKYGCRLVQQTIDKLSDNPKLHCFNTRLQLLHGLMTSVARNCFRL 355
Query: 291 SRNFSGNYVVQHVLE---LEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYR--IT 345
S N NYVVQ+V++ + + Y I L + + +S K S VV+ + +
Sbjct: 356 SSNEFANYVVQYVIKSSGVMEMYRDTIIEKCLLRNILSMSQDKYASHVVEGAFLFAPPLL 415
Query: 346 VNYIVEEFL---LNSDQIFRVACD-----KYGNYVIQ 374
++ +++E + + R A D +YGNYV+Q
Sbjct: 416 LSEMMDEIFDGYVKDQETNRDALDILLFHQYGNYVVQ 452
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 422 422 0.00083 118 3 11 22 0.50 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 73
No. of states in DFA: 613 (65 KB)
Total size of DFA: 261 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.70u 0.18s 40.88t Elapsed: 00:00:02
Total cpu time: 40.72u 0.18s 40.90t Elapsed: 00:00:02
Start: Tue May 21 02:45:20 2013 End: Tue May 21 02:45:22 2013