Query 047627
Match_columns 422
No_of_seqs 199 out of 1551
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 13:03:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1488 Translational represso 100.0 3.6E-67 7.9E-72 519.8 31.3 314 97-421 178-501 (503)
2 cd07920 Pumilio Pumilio-family 100.0 1.4E-58 3E-63 453.4 32.6 312 93-415 5-322 (322)
3 KOG2049 Translational represso 100.0 7.5E-56 1.6E-60 443.0 22.8 314 98-415 217-532 (536)
4 COG5099 RNA-binding protein of 100.0 8.7E-51 1.9E-55 425.5 30.8 308 103-420 446-762 (777)
5 cd07920 Pumilio Pumilio-family 100.0 7.1E-42 1.5E-46 335.2 28.3 277 89-376 38-322 (322)
6 KOG1488 Translational represso 100.0 2.7E-38 5.8E-43 314.2 22.3 278 91-379 210-498 (503)
7 KOG2050 Puf family RNA-binding 100.0 9.1E-29 2E-33 244.1 27.0 279 92-382 159-446 (652)
8 KOG2049 Translational represso 100.0 8.6E-30 1.9E-34 255.7 19.2 277 130-420 213-497 (536)
9 COG5099 RNA-binding protein of 100.0 2.1E-28 4.5E-33 257.3 23.3 265 140-417 447-723 (777)
10 KOG2188 Predicted RNA-binding 99.9 7.2E-26 1.6E-30 225.8 25.5 314 89-415 91-605 (650)
11 KOG2050 Puf family RNA-binding 99.9 4.1E-25 8.9E-30 218.3 25.5 283 121-416 147-441 (652)
12 KOG2188 Predicted RNA-binding 99.9 9.3E-22 2E-26 196.6 20.0 271 99-376 281-605 (650)
13 KOG4574 RNA-binding protein (c 99.7 4.6E-17 9.9E-22 166.5 13.0 282 122-416 534-850 (1007)
14 KOG4574 RNA-binding protein (c 99.4 1.5E-12 3.1E-17 134.0 9.9 277 105-394 553-863 (1007)
15 PF00806 PUF: Pumilio-family R 98.5 8E-08 1.7E-12 61.7 2.4 34 132-165 2-35 (35)
16 PF00806 PUF: Pumilio-family R 98.2 9.1E-07 2E-11 56.7 1.7 30 285-314 4-33 (35)
17 smart00025 Pumilio Pumilio-lik 98.1 1.7E-06 3.7E-11 55.4 2.6 34 132-165 2-35 (36)
18 smart00025 Pumilio Pumilio-lik 97.6 3.6E-05 7.8E-10 49.1 2.1 33 97-129 3-35 (36)
19 PF08144 CPL: CPL (NUC119) dom 92.9 0.25 5.5E-06 42.6 5.8 66 242-307 57-133 (148)
20 PF08144 CPL: CPL (NUC119) dom 92.3 0.29 6.3E-06 42.2 5.4 67 315-381 58-134 (148)
21 PF04286 DUF445: Protein of un 83.2 49 0.0011 32.5 20.1 34 387-420 290-327 (367)
22 PRK05686 fliG flagellar motor 82.4 54 0.0012 32.4 19.2 217 121-342 56-285 (339)
23 KOG1924 RhoA GTPase effector D 80.1 97 0.0021 33.9 16.2 41 129-169 715-755 (1102)
24 KOG2759 Vacuolar H+-ATPase V1 57.2 1.2E+02 0.0027 30.6 10.6 61 312-372 312-395 (442)
25 PF12231 Rif1_N: Rap1-interact 56.0 2.2E+02 0.0048 28.4 17.0 86 276-366 154-243 (372)
26 PF04078 Rcd1: Cell differenti 49.7 54 0.0012 31.0 6.5 49 145-196 159-214 (262)
27 KOG3821 Heparin sulfate cell s 47.2 2.5E+02 0.0054 29.5 11.2 19 322-340 121-139 (563)
28 PF11510 FA_FANCE: Fanconi Ana 46.6 2.3E+02 0.0049 27.0 10.2 195 115-321 42-261 (263)
29 PF04286 DUF445: Protein of un 45.2 3E+02 0.0065 26.8 23.5 40 359-402 302-344 (367)
30 TIGR00207 fliG flagellar motor 44.3 3.2E+02 0.007 26.9 19.4 218 120-342 52-282 (338)
31 KOG1240 Protein kinase contain 43.3 2.5E+02 0.0054 32.5 11.2 87 141-233 439-532 (1431)
32 PF09770 PAT1: Topoisomerase I 43.3 30 0.00065 38.5 4.5 149 250-399 576-772 (808)
33 COG4399 Uncharacterized protei 42.9 2.5E+02 0.0053 27.8 9.9 18 269-286 332-349 (376)
34 KOG1924 RhoA GTPase effector D 42.7 43 0.00093 36.4 5.2 33 180-214 727-759 (1102)
35 PRK05686 fliG flagellar motor 42.5 3.4E+02 0.0074 26.7 22.1 88 295-399 202-289 (339)
36 KOG2051 Nonsense-mediated mRNA 37.5 6.8E+02 0.015 28.7 17.5 56 157-217 456-511 (1128)
37 KOG1078 Vesicle coat complex C 35.7 6.4E+02 0.014 27.9 13.3 79 134-220 322-403 (865)
38 PF15471 TMEM171: Transmembran 34.1 47 0.001 31.3 3.5 13 37-49 218-230 (319)
39 PF05327 RRN3: RNA polymerase 32.4 4.7E+02 0.01 27.7 11.3 69 123-196 51-121 (563)
40 KOG0132 RNA polymerase II C-te 31.2 87 0.0019 34.0 5.3 45 148-196 46-104 (894)
41 KOG3036 Protein involved in ce 30.9 3.2E+02 0.0069 25.9 8.2 27 112-138 148-175 (293)
42 PF08349 DUF1722: Protein of u 30.5 2.9E+02 0.0064 22.4 7.5 68 102-169 4-79 (117)
43 KOG2073 SAP family cell cycle 30.5 8.2E+02 0.018 27.5 17.6 190 187-382 149-380 (838)
44 KOG0917 Uncharacterized conser 30.2 3.3E+02 0.0071 26.0 8.2 36 11-49 212-247 (338)
45 KOG2213 Apoptosis inhibitor 5/ 29.2 6.2E+02 0.013 25.6 14.5 38 305-342 207-244 (460)
46 KOG3821 Heparin sulfate cell s 27.7 7.5E+02 0.016 26.1 16.2 92 296-394 230-327 (563)
47 KOG2675 Adenylate cyclase-asso 27.0 48 0.001 33.5 2.4 18 35-52 232-250 (480)
48 PF14666 RICTOR_M: Rapamycin-i 26.7 4.1E+02 0.0089 24.6 8.5 127 259-397 83-221 (226)
49 COG4399 Uncharacterized protei 26.1 6.6E+02 0.014 24.9 19.9 29 279-307 213-241 (376)
50 PF08625 Utp13: Utp13 specific 25.9 4.1E+02 0.0089 22.5 9.5 83 104-195 8-90 (141)
51 COG5240 SEC21 Vesicle coat com 23.0 9.5E+02 0.021 25.8 20.5 285 113-421 70-405 (898)
52 PF05794 Tcp11: T-complex prot 20.8 6.2E+02 0.013 25.7 9.4 143 207-376 22-165 (441)
No 1
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-67 Score=519.82 Aligned_cols=314 Identities=24% Similarity=0.395 Sum_probs=299.9
Q ss_pred chhHhhhcccCcccHHHHHhhcCCCH-HHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchH
Q 047627 97 NSGILLLAQDEQGSQYLQEKLTSGDS-RFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLF 175 (422)
Q Consensus 97 ~~~v~~l~~d~~gsrvlQ~~L~~~~~-e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i 175 (422)
.|.++++++||+|||+||..|+.+.+ +++..||++|.+.+.+||+|.||||||||++|+++.+|+..+...+. +++
T Consensus 178 ~~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQkffE~gt~~q~~~l~~~~~---g~v 254 (503)
T KOG1488|consen 178 PGHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQKFFEHGTEDQRNLLHSQIK---GHV 254 (503)
T ss_pred CCCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccCCHHHHHHHHHHHH---hhh
Confidence 46899999999999999999999988 99999999999999999999999999999999999999999999999 999
Q ss_pred HHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhh--hHHH
Q 047627 176 VQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALE--HCLY 253 (422)
Q Consensus 176 ~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~--~~~~ 253 (422)
..||.|+|||||+||+|+... ...+.+++.+ |.+++..+++|+||+||||||+++.+. +...+|++.+.+ ++..
T Consensus 255 ~~Lsld~ygCRVIQkale~id-~~~~~~Li~E-Ld~~vl~~v~DQngnHViQK~ie~~p~--~~~~Fiv~~f~~~~~~~~ 330 (503)
T KOG1488|consen 255 LELSLDMYGCRVIQKALEKVD-VSLQIQLIDE-LDGHLLKCVKDQNGNHVIQKCIETLPP--DAWQFIVDFFSGDDNLLE 330 (503)
T ss_pred hhhhcccccchhHHHHHHhcC-HHHHHHHHHH-HHhhHHHHHhhcccceehhhhhhccCh--HHHHHHHHHhcCCCceeE
Confidence 999999999999999999998 5555555555 799999999999999999999999999 999999999998 9999
Q ss_pred HhcCcCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchH
Q 047627 254 LACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGS 333 (422)
Q Consensus 254 la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS 333 (422)
+|+|+|||+|||++||+|..+++..++++|..++..|+.|+|||||||++|++++++.+..|+++|.+++..|+.|||+|
T Consensus 331 ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~I~~~l~~~ll~~Sq~KfAS 410 (503)
T KOG1488|consen 331 LSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTIIIKCLLGNLLSMSQHKFAS 410 (503)
T ss_pred eeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhhHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHhcc--hhhHHHHHHHHhc----CChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHHhHHHHhc-h
Q 047627 334 FVVQNCLKY--RITVNYIVEEFLL----NSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRF-G 406 (422)
Q Consensus 334 ~Vvek~l~~--~~~r~~Ii~el~~----~~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~~~~~L~~-~ 406 (422)
||||+||.+ ...|..|++|++. ..+.+..|+.|+|||||||++++.+.+ ++++.|..+|++|+..|+. +
T Consensus 411 nVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~----~q~~~i~~rI~~h~~~Lrk~s 486 (503)
T KOG1488|consen 411 NVVEKAFLFAPPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMIDICGP----EQRELIKSRVKPHASRLRKFS 486 (503)
T ss_pred HHHHHHHhhCCHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHHhcCH----HHHHHHHHHHHHHHHHHccCc
Confidence 999999999 6789999999998 237999999999999999999999988 8999999999999999999 9
Q ss_pred hhhHHHHHHHhhhcc
Q 047627 407 YGKHVYNFIKDCDLQ 421 (422)
Q Consensus 407 ~G~~V~~~l~~~~~~ 421 (422)
|||||+++++++.-+
T Consensus 487 yGKhIia~lek~~~~ 501 (503)
T KOG1488|consen 487 YGKHIIAKLEKLRSK 501 (503)
T ss_pred cHHHHHHHHHHhccc
Confidence 999999999998754
No 2
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=1.4e-58 Score=453.41 Aligned_cols=312 Identities=30% Similarity=0.483 Sum_probs=299.9
Q ss_pred hhhcchhHhhhcccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhcC
Q 047627 93 QHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQD 172 (422)
Q Consensus 93 ~~l~~~~v~~l~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~ 172 (422)
++..+|+++++|.|++|||++|++|+.++++++..|++++.+++.+||.|+|||||+|+++++++++++..|++.+.
T Consensus 5 ~~~~~~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~--- 81 (322)
T cd07920 5 QDIKAGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKIL--- 81 (322)
T ss_pred HhccCcchhhccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHH---
Confidence 44444899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhHH
Q 047627 173 QLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCL 252 (422)
Q Consensus 173 ~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~~ 252 (422)
|+++.||.|+|||+|||++++.+. +++...+.+++.+++..|++|++|+||+|++++..++ +.++.|++.+.+++.
T Consensus 82 ~~~~~l~~~~~g~~vlqkll~~~~--~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~--~~~~~i~~~l~~~~~ 157 (322)
T cd07920 82 GHVVRLSLDMYGCRVIQKLLESIS--EEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPP--EDLQFIIDAFKGNCV 157 (322)
T ss_pred HHHHHHcccchhHHHHHHHHHhcC--HHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCH--HHHHHHHHHHHHHHH
Confidence 999999999999999999999997 7888888888999999999999999999999999988 899999999999999
Q ss_pred HHhcCcCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcch
Q 047627 253 YLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCG 332 (422)
Q Consensus 253 ~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~G 332 (422)
++++|++||+|+|++++.++++++..+++++.+++..|+.|+|||||||++|+.++++.++.+++.+.+++.+|+++|||
T Consensus 158 ~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~G 237 (322)
T cd07920 158 ALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFA 237 (322)
T ss_pred HHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc--hhhHHHHHHHHhcC---ChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHHhHHHHhc-h
Q 047627 333 SFVVQNCLKY--RITVNYIVEEFLLN---SDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRF-G 406 (422)
Q Consensus 333 S~Vvek~l~~--~~~r~~Ii~el~~~---~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~~~~~L~~-~ 406 (422)
|+|+|+||+. +..+..|+++++.. .+++.+|+.|+|||||||++|+.+++ .+++.|++.|.+++.+|+. +
T Consensus 238 s~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~----~~~~~i~~~l~~~~~~L~~~~ 313 (322)
T cd07920 238 SNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKE----EQRELLVEAIRPHLPSLRKSP 313 (322)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999 66899999999983 36999999999999999999999997 8999999999999999999 9
Q ss_pred hhhHHHHHH
Q 047627 407 YGKHVYNFI 415 (422)
Q Consensus 407 ~G~~V~~~l 415 (422)
||++|++++
T Consensus 314 ~G~~v~~~~ 322 (322)
T cd07920 314 YGKHILAKL 322 (322)
T ss_pred cHHHHHHhC
Confidence 999999975
No 3
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-56 Score=443.00 Aligned_cols=314 Identities=35% Similarity=0.514 Sum_probs=302.2
Q ss_pred hhHhhhcccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchHHH
Q 047627 98 SGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQ 177 (422)
Q Consensus 98 ~~v~~l~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~ 177 (422)
|.+..+|+|++|||++|+.+..++......|+.++..++.+||.|+||||++|+|+++|+++|+..|...++.+++.++.
T Consensus 217 ~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~p~~fv~ 296 (536)
T KOG2049|consen 217 GSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSDPRLFVE 296 (536)
T ss_pred hhhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcCccceeE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred hhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhHHHHhcC
Q 047627 178 ASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACH 257 (422)
Q Consensus 178 La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~~~la~~ 257 (422)
++.++||++++|++++... +.+++..+.+++.+.+..|++|.+|+||||+||+.+.. .+++++++.+.+.|.++|+|
T Consensus 297 i~~N~~GTr~iQkl~~~~~-~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~--~~~~~l~e~i~~~c~~iA~~ 373 (536)
T KOG2049|consen 297 ICTNMYGTRAVQKLLGKSD-SVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSK--EKNEFLYEAILRYCLDLATD 373 (536)
T ss_pred eeecCchhHHHHHHHhccc-cHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCc--hhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 88899999999999999999999999999999999999 99999999999999999999
Q ss_pred cCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHHHHH
Q 047627 258 EQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQ 337 (422)
Q Consensus 258 ~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vve 337 (422)
++||+|||+||....+++++.|++++..+++.|+.|+|||||||++|+..++.....|+..|.|++++||.+||||||||
T Consensus 374 ~hGCcvLq~cl~~~~~~~rd~Lv~~i~~naL~Ls~d~~GNyvVQyvl~L~~~~~t~~i~~~L~g~~veLS~qKfgS~vVE 453 (536)
T KOG2049|consen 374 QHGCCVLQKCLDYSRGEQRDRLVEEISRNALLLSNDPYGNYVVQYVLELNDPSCTVNIAEKLRGHYVELSFQKFGSHVVE 453 (536)
T ss_pred ccccchhHHHhcchhHHHHHHHHHHHHHHhHhhhcCccccchhhhhhhhcCcchHHHHHHhhhhHHHHHHHHhhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcc-hhhHHHHHHHHhcCChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHHhHHHHhc-hhhhHHHHHH
Q 047627 338 NCLKY-RITVNYIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRF-GYGKHVYNFI 415 (422)
Q Consensus 338 k~l~~-~~~r~~Ii~el~~~~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~~~~~L~~-~~G~~V~~~l 415 (422)
|||+. +..+..|+.||++ .+++.+|+.|+|||||||++|..++......++..+++.+++.+..|++ ++|+++..+.
T Consensus 454 k~L~~~~~~~~~iV~ell~-~~~~~~Ll~D~ygNyViq~AL~vtk~~~~~~~~~~lv~~~~~~~~~lr~~p~~~~~~~~~ 532 (536)
T KOG2049|consen 454 KLLKVRESSRAQIVLELLS-CDELDRLLRDPYGNYVIQTALRVTKVKLREDLFGLLVQKLMPRIRLLRNNPGGNIALIKD 532 (536)
T ss_pred HHHhcCcchhhHHHHHHHc-cccHHHHhhCccchHHHHHHHHHhhhcccchhhHHHHHHHhhhhHHhhcCcccceeeehh
Confidence 99999 6666999999999 4999999999999999999999998522227899999999999999999 9999987664
No 4
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-51 Score=425.52 Aligned_cols=308 Identities=25% Similarity=0.393 Sum_probs=294.8
Q ss_pred hcccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhcc
Q 047627 103 LAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDK 182 (422)
Q Consensus 103 l~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~ 182 (422)
.|+||+|||.||+.|+.-+.++.+.++.++.+...+||.|.|||||+||++|+++++||..++..+. ++++.|+.|+
T Consensus 446 ~~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~---~~~~~ls~~~ 522 (777)
T COG5099 446 SCKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSS---KHLVSLSVHK 522 (777)
T ss_pred ccCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhh---hhHHHhhccc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhHHHHhcCcCCcH
Q 047627 183 FGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCI 262 (422)
Q Consensus 183 ~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~~~la~~~~Gs~ 262 (422)
|||||+||+++... ++.+...+++++.+.+..+++|++|+||+|+|++.+.. +...+|++.+.+++.++++|+|||+
T Consensus 523 ~Gtrv~QK~id~~~-t~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~--~~~~fif~~~~~~~~~is~~r~Gs~ 599 (777)
T COG5099 523 YGTRVLQKAIDIVS-TDIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNK--EKNQFIFDSINENLYDLSTHRYGSR 599 (777)
T ss_pred cccHHHHHHHhccC-chhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCc--cccchHHHHHHhhhHhhhccccccH
Confidence 99999999999999 99999899999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHH-HHHHhhcCcchHHHHHHHhc
Q 047627 263 NMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRG-HYIDLSLTKCGSFVVQNCLK 341 (422)
Q Consensus 263 vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~-~~~~Ls~~k~GS~Vvek~l~ 341 (422)
|+|+|+|++..+....++++|..+...|+.|+|||||||++|+.+.+..++.++..+.. ++++|++|||||.|||||++
T Consensus 600 vvq~~le~~~~~~~~~~~~~Ii~~~~~L~~dq~GNyvvq~il~~g~~~~k~~i~~~~l~~~v~elS~~kfaSnvVeK~i~ 679 (777)
T COG5099 600 VVQRCLENCNSEDKENLVEEIISNSKYLSQDQYGNYVVQHILDNGAEPNKERIIIKLLSKRVVELSTHKFASNVVEKCIK 679 (777)
T ss_pred HHHHHHHhccHhHHHHHHHHHHHHHHhhccCCcchhhhhHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998888 99999999999999999999
Q ss_pred c--hhh-HHHHHHHHhc----CChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHHhHHHHhc-hhhhHHHH
Q 047627 342 Y--RIT-VNYIVEEFLL----NSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRF-GYGKHVYN 413 (422)
Q Consensus 342 ~--~~~-r~~Ii~el~~----~~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~~~~~L~~-~~G~~V~~ 413 (422)
. ... |.+|+.++.. .++-+..|+.|.|||||+|+++..... ..+.-+.+.+++++..|.. +||+|+..
T Consensus 680 ~~~~~~~~~ril~~~~~~~~~~~~~l~~i~~d~y~Nyv~q~~~~~s~~----~~~~l~~~~i~~~~~~l~~s~~g~~i~~ 755 (777)
T COG5099 680 YASDSFKRSRILNELTNRGIEKPGFLMLILDDQYANYVIQYLLDVSPE----IQRSLLARAIKKVIPSLKKSMYGQHILA 755 (777)
T ss_pred cCCcchHHHHHHHHHhcccccCChHHHHHHHhhhcchHHHHHHhhCch----hhHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 9 444 5899999887 344699999999999999999999999 8899999999999999999 99999999
Q ss_pred HHHhhhc
Q 047627 414 FIKDCDL 420 (422)
Q Consensus 414 ~l~~~~~ 420 (422)
++++.-.
T Consensus 756 ~le~~~~ 762 (777)
T COG5099 756 LLEKVGS 762 (777)
T ss_pred HHHHHhc
Confidence 9998643
No 5
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=7.1e-42 Score=335.15 Aligned_cols=277 Identities=18% Similarity=0.233 Sum_probs=263.4
Q ss_pred CCchhhhcchhHhhhcccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHH
Q 047627 89 ANPFQHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQI 168 (422)
Q Consensus 89 ~~~f~~l~~~~v~~l~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l 168 (422)
...|..+. +++.+++.|++|++++|++++.++++++..|++++.+++.+|+.|+||+|++|++++.++++++..+++.+
T Consensus 38 ~~i~~~l~-~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l 116 (322)
T cd07920 38 ELIFDEIL-PHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKEL 116 (322)
T ss_pred HHHHHHHH-HhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHH
Confidence 33577776 69999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHh
Q 047627 169 TSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAAL 248 (422)
Q Consensus 169 ~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~ 248 (422)
. +++..|+.|+||++|+|++++.+. +++...+.+.+.+++..++.|++|++|+|++++..++ +.++.+++.+.
T Consensus 117 ~---~~~~~L~~d~~gn~Vvq~~l~~~~--~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~--~~~~~l~~~l~ 189 (322)
T cd07920 117 R---GHVVELVKDQNGNHVIQKCIEKFP--PEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSE--EQREPLLEEIL 189 (322)
T ss_pred H---HCHHHHhhcccccHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCH--HHHHHHHHHHH
Confidence 9 999999999999999999999986 7788888888999999999999999999999999987 89999999999
Q ss_pred hhHHHHhcCcCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHH------HH
Q 047627 249 EHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLR------GH 322 (422)
Q Consensus 249 ~~~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~------~~ 322 (422)
+++..++.|++|++|+|++++.++++.+..+++.+.+++..|+.++||++|++++++.++++.++.+++.+. ++
T Consensus 190 ~~~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~ 269 (322)
T cd07920 190 EHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERELIIDEILASGNETSA 269 (322)
T ss_pred HHHHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 48
Q ss_pred HHHhhcCcchHHHHHHHhcc--hhhHHHHHHHHhcCChhHHHhhcChhhhHHHHHH
Q 047627 323 YIDLSLTKCGSFVVQNCLKY--RITVNYIVEEFLLNSDQIFRVACDKYGNYVIQTA 376 (422)
Q Consensus 323 ~~~Ls~~k~GS~Vvek~l~~--~~~r~~Ii~el~~~~~~l~~L~~d~~GnyVvq~~ 376 (422)
+.+|+.|+||++||+++|+. +..++.|+..+.. ++..|+.++||+.|+.++
T Consensus 270 l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~~l~~---~~~~L~~~~~G~~v~~~~ 322 (322)
T cd07920 270 LDTLMKDQYGNYVIQTALDVAKEEQRELLVEAIRP---HLPSLRKSPYGKHILAKL 322 (322)
T ss_pred HHHHhCCCcccHHHHHHHHhCCHHHHHHHHHHHHH---HHHHHcCCCcHHHHHHhC
Confidence 99999999999999999999 5678889999888 999999999999999874
No 6
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-38 Score=314.16 Aligned_cols=278 Identities=17% Similarity=0.192 Sum_probs=263.2
Q ss_pred chhhhcchhHhhhcccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhh
Q 047627 91 PFQHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITS 170 (422)
Q Consensus 91 ~f~~l~~~~v~~l~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~ 170 (422)
.|.++.. ...+|+.|-.|..++|+.+++++++++..+...+.+++..|+.|.||++||||-|++-+..+..++++++.
T Consensus 210 if~ei~~-~~~~L~~dvFGNyvIQkffE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li~ELd- 287 (503)
T KOG1488|consen 210 VFDEILP-PALELMTDVFGNYVIQKFFEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLIDELD- 287 (503)
T ss_pred HHHHHHH-HHHHHHHHHhcCchhhhhhccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHHHHHHHHHHH-
Confidence 4666663 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHH--HHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHh
Q 047627 171 QDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKR--LFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAAL 248 (422)
Q Consensus 171 ~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~--~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~ 248 (422)
++++.++.|++|+||+||++++++ ++....|++.+.+ ++..++.|+||+.|||+++|.+.. ++...+++.+.
T Consensus 288 --~~vl~~v~DQngnHViQK~ie~~p--~~~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~--~~~~~i~~ei~ 361 (503)
T KOG1488|consen 288 --GHLLKCVKDQNGNHVIQKCIETLP--PDAWQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSE--DQKQPLMEEII 361 (503)
T ss_pred --hhHHHHHhhcccceehhhhhhccC--hHHHHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCCh--HhhhHHHHHHH
Confidence 999999999999999999999998 8888999999998 999999999999999999999998 88888999999
Q ss_pred hhHHHHhcCcCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHHH------
Q 047627 249 EHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGH------ 322 (422)
Q Consensus 249 ~~~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~------ 322 (422)
.++..|+.++||++|+|.+|+++++..+..|++.+..+++.+++++|++.||++++.++.+..|..|++.+.+.
T Consensus 362 ~~~~~L~~dQygNYVIQHVie~g~~~~~~~I~~~l~~~ll~~Sq~KfASnVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~~ 441 (503)
T KOG1488|consen 362 RNCDQLAQDQYGNYVIQHVIEHGSPYRDTIIIKCLLGNLLSMSQHKFASNVVEKAFLFAPPLLRALIMNEIFPGYVEHPD 441 (503)
T ss_pred HHHHHHHhhhhhhHHHHHHHhcCChhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCccCCcc
Confidence 99999999999999999999999998899999999999999999999999999999999999999999998743
Q ss_pred -HHHhhcCcchHHHHHHHhcc--hhhHHHHHHHHhcCChhHHHhhcChhhhHHHHHHHhh
Q 047627 323 -YIDLSLTKCGSFVVQNCLKY--RITVNYIVEEFLLNSDQIFRVACDKYGNYVIQTALIE 379 (422)
Q Consensus 323 -~~~Ls~~k~GS~Vvek~l~~--~~~r~~Ii~el~~~~~~l~~L~~d~~GnyVvq~~L~~ 379 (422)
+..|..|+||.+|||++++. +..|+.|+..+.. ++..|-...||.+++.++=+.
T Consensus 442 ~L~~mmkdQYgNYVVQkmi~~~~~~q~~~i~~rI~~---h~~~Lrk~syGKhIia~lek~ 498 (503)
T KOG1488|consen 442 ALDIMMKDQYGNYVVQKMIDICGPEQRELIKSRVKP---HASRLRKFSYGKHIIAKLEKL 498 (503)
T ss_pred HHHHHHHHhhhhhHHHHHHHhcCHHHHHHHHHHHHH---HHHHHccCccHHHHHHHHHHh
Confidence 77899999999999999999 7789999999988 999999999999999886443
No 7
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.1e-29 Score=244.06 Aligned_cols=279 Identities=14% Similarity=0.127 Sum_probs=247.3
Q ss_pred hhhhcchhHhhhcccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhc
Q 047627 92 FQHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQ 171 (422)
Q Consensus 92 f~~l~~~~v~~l~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~ 171 (422)
|..+ +|+|-.++..|+.|||||++++++++.+|+.||+|+.|.+.+||+++||-|++|||+.|++++|+..|+..++
T Consensus 159 ~~li-kg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~iI~sl~-- 235 (652)
T KOG2050|consen 159 YKLI-KGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKIINSLR-- 235 (652)
T ss_pred HHHH-hhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHh--
Confidence 4444 5799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhH
Q 047627 172 DQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHC 251 (422)
Q Consensus 172 ~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~ 251 (422)
||++.|++|+.|+.||..++.... +.+|+..+..++++....+.++.+--+ |.++++..+ +.+..|...+.+.+
T Consensus 236 -Ghv~kLlRH~eaa~Vve~ay~~~A-~l~Qr~~li~EfYG~efqlfK~sn~~T-l~kil~~~p---ekk~~I~~~l~~~I 309 (652)
T KOG2050|consen 236 -GHVVKLLRHREAAYVVEYAYNDFA-TLEQRQYLIQEFYGDEFQLFKDSNDKT-LDKILAEAP---EKKASILRHLKAII 309 (652)
T ss_pred -hhHHHHHhhhHHHHHHHHHHHhhc-cHHHHHHHHHHHhhHHHHHHhccCccc-HHHHHHhCh---HhHHHHHHHHHHHh
Confidence 999999999999999999999988 899999999999999999999954444 555555554 56667777766655
Q ss_pred HHHhcC-----cCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHHHHHHh
Q 047627 252 LYLACH-----EQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDL 326 (422)
Q Consensus 252 ~~la~~-----~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~L 326 (422)
..++.- ..-..++-..+..|+++.+..+++.+.+-+..++..+.|+.|.-+++.+++++.|+.|++.++.++..+
T Consensus 310 ~~v~eKg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K~h~~K~ 389 (652)
T KOG2050|consen 310 TPVAEKGSVDHTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMKEHVEKI 389 (652)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 444432 223456777889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcchHHHHHHHhcc-hh---hHHHHHHHHhcCChhHHHhhcChhhhHHHHHHHhhcCC
Q 047627 327 SLTKCGSFVVQNCLKY-RI---TVNYIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMR 382 (422)
Q Consensus 327 s~~k~GS~Vvek~l~~-~~---~r~~Ii~el~~~~~~l~~L~~d~~GnyVvq~~L~~~~~ 382 (422)
+.+.||+.|+-.+|++ ++ ..+.|+.++.+ .+..+..|+||+.|++.++...+.
T Consensus 390 A~~~yGh~vlia~ldc~DDT~l~kk~i~~e~~~---el~~li~Dk~Grrv~lyll~p~D~ 446 (652)
T KOG2050|consen 390 ANDEYGHLVLIALLDCTDDTKLLKKLIYDELKS---ELKSLISDKYGRRVILYLLAPRDG 446 (652)
T ss_pred HhhccCceehhhhhcccchHHHHHHHHHHHHHH---HHHHHhccchhhhhhhhhccCCcc
Confidence 9999999999999999 33 57888899888 999999999999999999988543
No 8
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8.6e-30 Score=255.71 Aligned_cols=277 Identities=18% Similarity=0.190 Sum_probs=254.7
Q ss_pred HHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHH
Q 047627 130 NVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKAL 209 (422)
Q Consensus 130 ~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l 209 (422)
.+..+.+..+++|++|+.++|++++.++...-..|+..+. .++++|..|++|..++|++++.+. ++++..|...+
T Consensus 213 ~~~~~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~---~~~~~Lm~d~fGny~vqkl~~~~~--~eq~~~i~~~l 287 (536)
T KOG2049|consen 213 VEIQGSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETI---QDVPELMEDPFGNYLVQKLLEVCD--EEQLTKIVSLL 287 (536)
T ss_pred hccchhhhhhcccccCCcccccCcccCccccHHHHHHHHH---HHHHHHHhccchhHHHHHHHHhhC--HHHHHHHHHHH
Confidence 4455789999999999999999999999999999999999 999999999999999999999997 78887777766
Q ss_pred HH---HHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhHHHHhcCcCCcHHHHHHHhccChhhHHHHHHHHHHh
Q 047627 210 KR---LFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVN 286 (422)
Q Consensus 210 ~~---~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~ 286 (422)
.. .++.++.+.+|++.+|++++.... .++...+++++...+..|.+|.+|.+|+|+||+...++..+.+.+.+.++
T Consensus 288 ts~p~~fv~i~~N~~GTr~iQkl~~~~~~-~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~~~~~~l~e~i~~~ 366 (536)
T KOG2049|consen 288 TSDPRLFVEICTNMYGTRAVQKLLGKSDS-VDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSKEKNEFLYEAILRY 366 (536)
T ss_pred hcCccceeEeeecCchhHHHHHHHhcccc-HHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCchhhhHHHHHHHHH
Confidence 65 588999999999999999999865 24567888999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcc--hhhHHHHHHHHhcCChhHHHhh
Q 047627 287 AASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY--RITVNYIVEEFLLNSDQIFRVA 364 (422)
Q Consensus 287 ~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~--~~~r~~Ii~el~~~~~~l~~L~ 364 (422)
+..+|.|++|+.|+|.+|......+|+.+++.+..+...|+.+.||.+|||.+++. ......|+..|.. +..+|+
T Consensus 367 c~~iA~~~hGCcvLq~cl~~~~~~~rd~Lv~~i~~naL~Ls~d~~GNyvVQyvl~L~~~~~t~~i~~~L~g---~~veLS 443 (536)
T KOG2049|consen 367 CLDLATDQHGCCVLQKCLDYSRGEQRDRLVEEISRNALLLSNDPYGNYVVQYVLELNDPSCTVNIAEKLRG---HYVELS 443 (536)
T ss_pred HHHHHHhccccchhHHHhcchhHHHHHHHHHHHHHHhHhhhcCccccchhhhhhhhcCcchHHHHHHhhhh---HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 4456889999887 999999
Q ss_pred cChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHH--hHHHHhc-hhhhHHHHHHHhhhc
Q 047627 365 CDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQ--NLDSLRF-GYGKHVYNFIKDCDL 420 (422)
Q Consensus 365 ~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~--~~~~L~~-~~G~~V~~~l~~~~~ 420 (422)
...||+|||+++|+..... +..++.++.. .+..|.. +||..|+++.++...
T Consensus 444 ~qKfgS~vVEk~L~~~~~~-----~~~iV~ell~~~~~~~Ll~D~ygNyViq~AL~vtk 497 (536)
T KOG2049|consen 444 FQKFGSHVVEKLLKVRESS-----RAQIVLELLSCDELDRLLRDPYGNYVIQTALRVTK 497 (536)
T ss_pred HHhhccHHHHHHHhcCcch-----hhHHHHHHHccccHHHHhhCccchHHHHHHHHHhh
Confidence 9999999999999999773 4778888877 8999999 999999999987654
No 9
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.1e-28 Score=257.29 Aligned_cols=265 Identities=19% Similarity=0.255 Sum_probs=241.4
Q ss_pred hccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcC
Q 047627 140 ICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMT 219 (422)
Q Consensus 140 ~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d 219 (422)
+.|++|++.+|+.++.-+.+....++..+. +..++|+.|.||..++||++|.+. +.++..+...+.+++..+..+
T Consensus 447 ~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~---d~~~eLs~d~fGNyliQK~fe~~s--~~q~~~ml~~~~~~~~~ls~~ 521 (777)
T COG5099 447 CKDQHGSRFLQKLLDSNSSPEIEVIFNEIL---DQLVELSSDYFGNYLIQKLFEYGS--EIQKSIMLSKSSKHLVSLSVH 521 (777)
T ss_pred cCCcHHHHHHHHHhcccchHHHHHHHHHHh---hhhHHHHHhhhcchhhHHHHHhcc--HHHHHHHHHHhhhhHHHhhcc
Confidence 799999999999999988888889999999 999999999999999999999997 788888888899999999999
Q ss_pred CCccHHHHHHHHHhccCcchh-hHHHHHHhhhHHHHhcCcCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhH
Q 047627 220 KPGSSVVLQCLEQIYHHNNKN-DFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNY 298 (422)
Q Consensus 220 ~~gshViQ~~l~~~~~~~~~~-~~i~~~l~~~~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~ 298 (422)
.+|++|+|++++.... +.. ..+++.+.+.+..+.+|++|++|+|+|++....+...-+++.+.+++.+++.++||+.
T Consensus 522 ~~Gtrv~QK~id~~~t--~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~~~~~fif~~~~~~~~~is~~r~Gs~ 599 (777)
T COG5099 522 KYGTRVLQKAIDIVST--DIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQFIFDSINENLYDLSTHRYGSR 599 (777)
T ss_pred ccccHHHHHHHhccCc--hhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCccccchHHHHHHhhhHhhhccccccH
Confidence 9999999999999876 443 3789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcc--hhhHHHHHHHHhcCChhHHHhhcChhhhHHHHHH
Q 047627 299 VVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY--RITVNYIVEEFLLNSDQIFRVACDKYGNYVIQTA 376 (422)
Q Consensus 299 VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~--~~~r~~Ii~el~~~~~~l~~L~~d~~GnyVvq~~ 376 (422)
|||.+++.+..+..+.+++.+..+...|+.+.||.+||+.+|+. ...+++|+..++. .++.+|++|+||+-||+++
T Consensus 600 vvq~~le~~~~~~~~~~~~~Ii~~~~~L~~dq~GNyvvq~il~~g~~~~k~~i~~~~l~--~~v~elS~~kfaSnvVeK~ 677 (777)
T COG5099 600 VVQRCLENCNSEDKENLVEEIISNSKYLSQDQYGNYVVQHILDNGAEPNKERIIIKLLS--KRVVELSTHKFASNVVEKC 677 (777)
T ss_pred HHHHHHHhccHhHHHHHHHHHHHHHHhhccCCcchhhhhHHhhcCCCcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 99999999999888999999999999999999999999999999 6778999988887 6999999999999999999
Q ss_pred HhhcCCCCcHHH-HHHHHHHHHH------h-HHHHhc-hhhhHHHHHHHh
Q 047627 377 LIETMRPNSLHL-HQRLVTKLQQ------N-LDSLRF-GYGKHVYNFIKD 417 (422)
Q Consensus 377 L~~~~~~~~~~~-~~~l~~~l~~------~-~~~L~~-~~G~~V~~~l~~ 417 (422)
+..+.+ .+ +++|+.++.. . +..|.. .||.+|+.++..
T Consensus 678 i~~~~~----~~~~~ril~~~~~~~~~~~~~l~~i~~d~y~Nyv~q~~~~ 723 (777)
T COG5099 678 IKYASD----SFKRSRILNELTNRGIEKPGFLMLILDDQYANYVIQYLLD 723 (777)
T ss_pred HhcCCc----chHHHHHHHHHhcccccCChHHHHHHHhhhcchHHHHHHh
Confidence 999998 45 5888888865 1 556666 899998887653
No 10
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.2e-26 Score=225.80 Aligned_cols=314 Identities=17% Similarity=0.217 Sum_probs=249.4
Q ss_pred CCchhhhcchhHhhhcccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhC------------
Q 047627 89 ANPFQHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETC------------ 156 (422)
Q Consensus 89 ~~~f~~l~~~~v~~l~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~------------ 156 (422)
+..|++.. |+..++|.+|-||.++|.++..++..+...+|.++.+++..+++|+||+||+|++++..
T Consensus 91 n~i~ee~~-grel~l~tnqi~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~r~gshVle~~L~~~a~~vg~e~~~~s 169 (650)
T KOG2188|consen 91 NSIFEEVY-GRELDLATNQIGSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQHRFGSHVLESALEKLAALVGQEAALLS 169 (650)
T ss_pred hhHHHHhc-cceeehhccchhHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 33677775 79999999999999999999999999999999999999999999999999999999871
Q ss_pred -------------C-HHHHHHHHHHHhhcCchHH-HhhhcccchHHHHHHHHhhcCC----h------------------
Q 047627 157 -------------N-EDQLLRITLQITSQDQLFV-QASVDKFGSSSIRKLMKAVANR----P------------------ 199 (422)
Q Consensus 157 -------------~-~~q~~~i~~~l~~~~~~i~-~La~~~~Gs~VvQkll~~~~~~----~------------------ 199 (422)
+ ++....+...+. +++. .++.|.+|+||+.+++-++... .
T Consensus 170 ~dea~~~ke~p~~t~e~~~~~m~nei~---~~~~~~l~~~~~gshv~rt~~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~ 246 (650)
T KOG2188|consen 170 EDEAAVEKEGPFVTCENLLLLMLNEIS---PHVLKTLMELIFGSHVLRTILLLLFSMCPIAESEHKLALRKAAHRGMDDW 246 (650)
T ss_pred hhhhcccccCcccccchHHHHHHHHhh---HHHHHHHHHHHHhHHHHHHHHHHHccCcchhhhHHHHHHHHHhhccccch
Confidence 0 112334445666 8888 9999999999999987776620 0
Q ss_pred ----------------------------------hHHHHHHH-------------HHH----------------------
Q 047627 200 ----------------------------------PLLDLVMK-------------ALK---------------------- 210 (422)
Q Consensus 200 ----------------------------------~~~~~i~~-------------~l~---------------------- 210 (422)
+.....++ ++.
T Consensus 247 ~~~~~~pqsFp~~l~~~i~~~l~~~~~~s~~~~~~~k~~~vDk~~s~v~q~~i~l~~~~~~~~~~~~~~~lv~~~~~~~e 326 (650)
T KOG2188|consen 247 DAVTTPPQSFPQRLIVWICTGLSALQDVSESKKRDLKGYEVDKSSSNVLQKAIRLAFDENKNDQFMESPRLVTKFQLFNE 326 (650)
T ss_pred hhhhcChhhccHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhhccc
Confidence 00000000 000
Q ss_pred ---------HHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhHHHHhcCcCCcHHHHHHHhccC-hhhHHHHH
Q 047627 211 ---------RLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMK-GPRRKQIL 280 (422)
Q Consensus 211 ---------~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~~~la~~~~Gs~vlq~ll~~~~-~~~~~~L~ 280 (422)
+-..++..|+.|+|++..+++.++. +....++..+.+++..||.|+.++.+||++|++.+ .++...++
T Consensus 327 ~d~~~~kE~~~~k~~l~d~tgSrllE~Imeva~~--~~~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v~~v~ 404 (650)
T KOG2188|consen 327 KDGLWGKERSFLKELLSDQTGSRLLEVIMEVASE--SLLSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDVGSVI 404 (650)
T ss_pred cCcccccccHHHHHHHhcCcccHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHHHHHH
Confidence 0112466789999999999999988 88888888889999999999999999999999998 77899999
Q ss_pred HHHHHhHHhhhhc-----------------------------------------------------------------CC
Q 047627 281 YLISVNAASLSRN-----------------------------------------------------------------FS 295 (422)
Q Consensus 281 ~~l~~~~~~L~~d-----------------------------------------------------------------~~ 295 (422)
+++.+++..|... +-
T Consensus 405 eeL~P~~~~LL~~g~~gVv~sLia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~~lL~~~~~~g~~~~~~~t~~~h~~ 484 (650)
T KOG2188|consen 405 EELAPKLSSLLEQGNSGVVASLIAASARLGSYQDKMLQQLIQAFHAASESKKNILPCLLFSLTLFGCVGEWFLTEKFHQK 484 (650)
T ss_pred HHHhHHHHHHHHcCCchHhHHHHHHHHhhchhHHHHHHHHHHHHhcCChhhcchHHHHHHHhhhcccccccccHHHHhhc
Confidence 9998877655542 23
Q ss_pred hhHHHHHhhccCChh---hHHHHHHHHHHHHHHhhcCcchHHHHHHHhcc----hhhHHHHHHHHhcCChhHHHhhcChh
Q 047627 296 GNYVVQHVLELEDPY---LIETICFSLRGHYIDLSLTKCGSFVVQNCLKY----RITVNYIVEEFLLNSDQIFRVACDKY 368 (422)
Q Consensus 296 Gn~VvQ~lL~~~~~~---~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~----~~~r~~Ii~el~~~~~~l~~L~~d~~ 368 (422)
|+.++|+++....+. ....+.+....++.++|++.+||||||.+|.. ...+++++..|-. .+.+|+.+.|
T Consensus 485 ga~lle~lv~f~k~~i~~litsll~L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g---~~~~La~~~~ 561 (650)
T KOG2188|consen 485 GAVLLEELVNFSKTHIQTLITSLLSLSEEQILEMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDG---SFVTLALSTF 561 (650)
T ss_pred hhHHHHHHHhhchhhhHHHHHHHHhhhHHHHHHHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhc---cchheeecCc
Confidence 444444444443321 12233344457899999999999999999999 4578888887776 9999999999
Q ss_pred hhHHHHHHHhhcCCCCcHHHHHHHHHHHHHhHHHHhc-hhhhHHHHHH
Q 047627 369 GNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRF-GYGKHVYNFI 415 (422)
Q Consensus 369 GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~~~~~L~~-~~G~~V~~~l 415 (422)
|++|+.++|+.+++ .++++|+.+|..--.++++ +||+.|+.++
T Consensus 562 GSrv~eK~wea~~~----~~k~rIakeL~~~~~~vk~s~~gk~v~~~~ 605 (650)
T KOG2188|consen 562 GSRVFEKCWEATDV----LYKERIAKELVGIHNDVKSSKYGKFVMLNW 605 (650)
T ss_pred ccHHHHHHHHHhhH----HHHHHHHHHHHhhccccccCcchHHHHHhc
Confidence 99999999999998 9999999999999999999 9999999765
No 11
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4.1e-25 Score=218.32 Aligned_cols=283 Identities=15% Similarity=0.171 Sum_probs=246.4
Q ss_pred CHHHHHHHHHHH----HHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhc
Q 047627 121 DSRFLDKVFNVV----SEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVA 196 (422)
Q Consensus 121 ~~e~~~~I~~ei----~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~ 196 (422)
+.|+|+.++.|+ .+++..|+.-.-.++|||.++.+|++++|..|++.+. +.+++||.++||-+.||+++.+.+
T Consensus 147 ~ke~R~klv~el~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~---p~~v~l~kskY~k~~v~KmLkyGs 223 (652)
T KOG2050|consen 147 PKEERDKLVSELYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELL---PFFVELAKSKYAKFFVQKMLKYGS 223 (652)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHh---HHHHHHHHhHHHHHHHHHHHhcCC
Confidence 347887776665 4799999999999999999999999999999999999 999999999999999999999997
Q ss_pred CChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhHHHHhcCcCCcHHHHHHHhccChhhH
Q 047627 197 NRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRR 276 (422)
Q Consensus 197 ~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~~~la~~~~Gs~vlq~ll~~~~~~~~ 276 (422)
+.+.+.|+++|++++..|+++..|++|+...+..+.. .+++..++..+.+.-..+..+ .--..|.+++... ++.+
T Consensus 224 --k~q~a~iI~sl~Ghv~kLlRH~eaa~Vve~ay~~~A~-l~Qr~~li~EfYG~efqlfK~-sn~~Tl~kil~~~-pekk 298 (652)
T KOG2050|consen 224 --KAQKAKIINSLRGHVVKLLRHREAAYVVEYAYNDFAT-LEQRQYLIQEFYGDEFQLFKD-SNDKTLDKILAEA-PEKK 298 (652)
T ss_pred --HHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhhcc-HHHHHHHHHHHhhHHHHHHhc-cCcccHHHHHHhC-hHhH
Confidence 8899999999999999999999999999999998643 278889999999998888888 4445677777763 5677
Q ss_pred HHHHHHHHHhHHhhhhcC-ChhH----HHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcc--hhhHHHH
Q 047627 277 KQILYLISVNAASLSRNF-SGNY----VVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY--RITVNYI 349 (422)
Q Consensus 277 ~~L~~~l~~~~~~L~~d~-~Gn~----VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~--~~~r~~I 349 (422)
..|+..+...+...+.-. .|.- +.--.+..++++.+..+++.+...+.+|...+-||.|..+|++. +..|+.|
T Consensus 299 ~~I~~~l~~~I~~v~eKg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK~I 378 (652)
T KOG2050|consen 299 ASILRHLKAIITPVAEKGSVDHTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERKLI 378 (652)
T ss_pred HHHHHHHHHHhHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHHHH
Confidence 788888877776655432 2322 22223456788999999999999999999999999999999999 7899999
Q ss_pred HHHHhcCChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHHhHHHHhc-hhhhHHHHHHH
Q 047627 350 VEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRF-GYGKHVYNFIK 416 (422)
Q Consensus 350 i~el~~~~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~~~~~L~~-~~G~~V~~~l~ 416 (422)
+..|-. ++.+++.|+||+.|+-++|++.+++. .+.+.|++++...+..|.. +||++|+.++-
T Consensus 379 iK~~K~---h~~K~A~~~yGh~vlia~ldc~DDT~--l~kk~i~~e~~~el~~li~Dk~Grrv~lyll 441 (652)
T KOG2050|consen 379 IKNMKE---HVEKIANDEYGHLVLIALLDCTDDTK--LLKKLIYDELKSELKSLISDKYGRRVILYLL 441 (652)
T ss_pred HHHHHH---HHHHHHhhccCceehhhhhcccchHH--HHHHHHHHHHHHHHHHHhccchhhhhhhhhc
Confidence 999998 99999999999999999999999986 7889999999999999999 99999998874
No 12
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=9.3e-22 Score=196.57 Aligned_cols=271 Identities=17% Similarity=0.232 Sum_probs=213.7
Q ss_pred hHhhhcccCcccHHHHHhhcCCCHHH-----HH------H--HHHH------HH-HHHHHhhccccchHHHHHHHhhCCH
Q 047627 99 GILLLAQDEQGSQYLQEKLTSGDSRF-----LD------K--VFNV------VS-EFTFQIICNQYARFVFGKFIETCNE 158 (422)
Q Consensus 99 ~v~~l~~d~~gsrvlQ~~L~~~~~e~-----~~------~--I~~e------i~-~~~~~L~~d~~gn~vvQkLi~~~~~ 158 (422)
++...+.|+..|.++|+++.....+. .+ . +++| .. +.+.++..|+-|+++++.+++.+++
T Consensus 281 ~~k~~~vDk~~s~v~q~~i~l~~~~~~~~~~~~~~~lv~~~~~~~e~d~~~~kE~~~~k~~l~d~tgSrllE~Imeva~~ 360 (650)
T KOG2188|consen 281 DLKGYEVDKSSSNVLQKAIRLAFDENKNDQFMESPRLVTKFQLFNEKDGLWGKERSFLKELLSDQTGSRLLEVIMEVASE 360 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhhccccCcccccccHHHHHHHhcCcccHHHHHHHHhcCH
Confidence 56678899999999999998865321 11 1 1111 11 3566777899999999999999999
Q ss_pred HHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCc----------------
Q 047627 159 DQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPG---------------- 222 (422)
Q Consensus 159 ~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~g---------------- 222 (422)
..+..+...+. +++.+||.|+.|+++||++|+.++ +.+++..|.+++.|++..|+...+-
T Consensus 361 ~~~~lf~~~f~---~rl~~La~~p~aNF~lQrli~h~~-~~e~v~~v~eeL~P~~~~LL~~g~~gVv~sLia~~~rl~s~ 436 (650)
T KOG2188|consen 361 SLLSLFYIVFC---GRLDELAVHPIANFPLQRLINHLT-SLEDVGSVIEELAPKLSSLLEQGNSGVVASLIAASARLGSY 436 (650)
T ss_pred HHHHHHHHHHH---HHHHHHHhCccccchHHHHHHhcc-CHHHHHHHHHHHhHHHHHHHHcCCchHhHHHHHHHHhhchh
Confidence 99966667899 999999999999999999999999 9999999999999999988876433
Q ss_pred -cHHHHHHHHHhccCcchhhHHHHHHh------hhH----HHHhcCcCCcHHHHHHHhccCh---hhHHHHHHHHHHhHH
Q 047627 223 -SSVVLQCLEQIYHHNNKNDFIYQAAL------EHC----LYLACHEQGCINMNNFIDEMKG---PRRKQILYLISVNAA 288 (422)
Q Consensus 223 -shViQ~~l~~~~~~~~~~~~i~~~l~------~~~----~~la~~~~Gs~vlq~ll~~~~~---~~~~~L~~~l~~~~~ 288 (422)
+-++|.+++.+....+..+.|+..+. +.. ..--.|..||.++|.++++..+ ...+.+.+...+++.
T Consensus 437 q~~~l~~Li~a~~~~~~~~k~il~~lL~~~~~~g~~~~~~~t~~~h~~ga~lle~lv~f~k~~i~~litsll~L~~eqi~ 516 (650)
T KOG2188|consen 437 QDKMLQQLIQAFHAASESKKNILPCLLFSLTLFGCVGEWFLTEKFHQKGAVLLEELVNFSKTHIQTLITSLLSLSEEQIL 516 (650)
T ss_pred HHHHHHHHHHHHhcCChhhcchHHHHHHHhhhcccccccccHHHHhhchhHHHHHHHhhchhhhHHHHHHHHhhhHHHHH
Confidence 23455555554432222222222211 100 1111355899999999999765 236677777788999
Q ss_pred hhhhcCChhHHHHHhhcc--CChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcc--hhhHHHHHHHHhcCChhHHHhh
Q 047627 289 SLSRNFSGNYVVQHVLEL--EDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY--RITVNYIVEEFLLNSDQIFRVA 364 (422)
Q Consensus 289 ~L~~d~~Gn~VvQ~lL~~--~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~--~~~r~~Ii~el~~~~~~l~~L~ 364 (422)
+++++.+|++||+++|.. .+++.+++++..+.+.+++|+++.|||||++|||+. ...|.+|+.+|+. .-..+-
T Consensus 517 e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g~~~~La~~~~GSrv~eK~wea~~~~~k~rIakeL~~---~~~~vk 593 (650)
T KOG2188|consen 517 EMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDGSFVTLALSTFGSRVFEKCWEATDVLYKERIAKELVG---IHNDVK 593 (650)
T ss_pred HHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhccchheeecCcccHHHHHHHHHhhHHHHHHHHHHHHh---hccccc
Confidence 999999999999999998 458899999999999999999999999999999999 6688999999998 888899
Q ss_pred cChhhhHHHHHH
Q 047627 365 CDKYGNYVIQTA 376 (422)
Q Consensus 365 ~d~~GnyVvq~~ 376 (422)
.++||.||+.+.
T Consensus 594 ~s~~gk~v~~~~ 605 (650)
T KOG2188|consen 594 SSKYGKFVMLNW 605 (650)
T ss_pred cCcchHHHHHhc
Confidence 999999998763
No 13
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.72 E-value=4.6e-17 Score=166.51 Aligned_cols=282 Identities=15% Similarity=0.169 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhcCChhH
Q 047627 122 SRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPL 201 (422)
Q Consensus 122 ~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~ 201 (422)
..+...+.-++.+...++..|=.||-|+|++++++++..+...++... .++..+..|+||.++.||+++.+. .+.+
T Consensus 534 ~pEied~ai~mLDe~~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s---~ylts~gvHknGtw~~qk~ik~a~-te~q 609 (1007)
T KOG4574|consen 534 APEIEDLAILMLDELPELSSDYLGNTVVQKFFELSSDIIKDAMLRRGS---KYLTSMGVHKNGTWACQKIIKMAF-TERQ 609 (1007)
T ss_pred chhHHHHHHHHhccCCcchhhhhcchhhHHHHhhccHHHHHHHHhhhh---hhhhhccccccchHHHHHHHHHhh-chhh
Confidence 456677777888899999999999999999999999999999998888 999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhHHHHhcCcCCcHHHHHHHhccCh--hhHHH-
Q 047627 202 LDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKG--PRRKQ- 278 (422)
Q Consensus 202 ~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~~~la~~~~Gs~vlq~ll~~~~~--~~~~~- 278 (422)
...+...+.+....++.|++|+||+|.+|...- .-..++++.+..+++++...+||++.+.+|++.... ++...
T Consensus 610 ik~iv~g~dpyc~~l~~dqfgnyvaqd~LkF~f---p~nsFVfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~qsl~ 686 (1007)
T KOG4574|consen 610 IKLIVRGVDPYCTPLLNDQFGNYVAQDSLKFGF---PWNSFVFESVFSHFWDIVQSRFGSRAVRACLEALNANTEDQSLV 686 (1007)
T ss_pred hheeeeccCcchhhHHHHhhcceeeeeehhccC---ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchhhhhh
Confidence 999999899999999999999999999999864 456788999999999999999999999999986542 22222
Q ss_pred HHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHH-HHHHHHHHHHHHhhcCcchHHHHHHHhcc---hhhHHHHHHHHh
Q 047627 279 ILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIE-TICFSLRGHYIDLSLTKCGSFVVQNCLKY---RITVNYIVEEFL 354 (422)
Q Consensus 279 L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~-~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~---~~~r~~Ii~el~ 354 (422)
+-..+......++.+..|-..|.++|+.+....|. .++..+.++++.+|+||-|+-+|.|+++. +..|++|++.|+
T Consensus 687 ~~s~iIs~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepvs~ekii~hlf 766 (1007)
T KOG4574|consen 687 RESCIISKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPVSREKIIEHLF 766 (1007)
T ss_pred hhhhhhhchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCChHHHHHHHHHHh
Confidence 22223444788899999999999999987644443 44557779999999999999999999999 445999999988
Q ss_pred c---------------------------CChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHHhHHHHhc-h
Q 047627 355 L---------------------------NSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRF-G 406 (422)
Q Consensus 355 ~---------------------------~~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~~~~~L~~-~ 406 (422)
. ..+.+.....|+++++|.|.++....... ..-++|++++ .-+.. +
T Consensus 767 ~~~n~kd~~lt~Vl~~~~~gpmfiikvi~~p~iel~f~dQf~kvvrq~il~~~a~~n--arv~~Lleev----gliSask 840 (1007)
T KOG4574|consen 767 HLRNFKDSALTEVLTEANYGPMFIIKVITKPTIELAFRDQFIKVVRQVILNSPAVSN--ARVQRLLEEV----GLISASK 840 (1007)
T ss_pred hccccccchhhhhhhhhccccceeeeeeccccchHHHHHHHHHHHHHHHHhcCCccH--HHHHHHHHHH----hhhcccc
Confidence 5 14455667779999999999999887743 3334555554 44455 7
Q ss_pred hhhHHHHHHH
Q 047627 407 YGKHVYNFIK 416 (422)
Q Consensus 407 ~G~~V~~~l~ 416 (422)
||++-.+.+.
T Consensus 841 sgs~s~q~~~ 850 (1007)
T KOG4574|consen 841 SGSQSIQMHI 850 (1007)
T ss_pred chhHHHHhhh
Confidence 7776655543
No 14
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.38 E-value=1.5e-12 Score=133.97 Aligned_cols=277 Identities=18% Similarity=0.194 Sum_probs=195.3
Q ss_pred ccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCC-HHHHHHHHHHHhhcCchHHHhhhccc
Q 047627 105 QDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCN-EDQLLRITLQITSQDQLFVQASVDKF 183 (422)
Q Consensus 105 ~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~-~~q~~~i~~~l~~~~~~i~~La~~~~ 183 (422)
.|=.|.-|+|++.+....-.++.........+..+..++||.+.+||+++... +.|.+.+++... .....+..++|
T Consensus 553 SdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~iv~g~d---pyc~~l~~dqf 629 (1007)
T KOG4574|consen 553 SDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKLIVRGVD---PYCTPLLNDQF 629 (1007)
T ss_pred hhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhheeeeccC---cchhhHHHHhh
Confidence 34458889999999999999999999999999999999999999999999874 667788888888 99999999999
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHh-hhHHHHhcCcCCcH
Q 047627 184 GSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAAL-EHCLYLACHEQGCI 262 (422)
Q Consensus 184 Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~-~~~~~la~~~~Gs~ 262 (422)
|++|+|..+.... .....|.+.+..++..+....+|..-+++|++......++..+..+.+. ...-.++++-.|-+
T Consensus 630 gnyvaqd~LkF~f---p~nsFVfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~qsl~~~s~iIs~ss~latnsng~l 706 (1007)
T KOG4574|consen 630 GNYVAQDSLKFGF---PWNSFVFESVFSHFWDIVQSRFGSRAVRACLEALNANTEDQSLVRESCIISKSSYLATNSNGLL 706 (1007)
T ss_pred cceeeeeehhccC---ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchhhhhhhhhhhhhchhhhhhcCccce
Confidence 9999999999887 4456677889999999999999999999999987542233333333322 12445555666666
Q ss_pred HHHHHHhccChhhHH-HHHHHHHHhHHhhhhcCChhHHHHHhhccCChh-hHHHHHHHHHH-------------------
Q 047627 263 NMNNFIDEMKGPRRK-QILYLISVNAASLSRNFSGNYVVQHVLELEDPY-LIETICFSLRG------------------- 321 (422)
Q Consensus 263 vlq~ll~~~~~~~~~-~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~-~~~~ii~~l~~------------------- 321 (422)
.|..+++.+.-..+. .++..+.+++..+|.|.-|+-+|++++++..+. .+++|++.|.+
T Consensus 707 lvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepvs~ekii~hlf~~~n~kd~~lt~Vl~~~~~g 786 (1007)
T KOG4574|consen 707 LVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPVSREKIIEHLFHLRNFKDSALTEVLTEANYG 786 (1007)
T ss_pred eeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCChHHHHHHHHHHhhccccccchhhhhhhhhccc
Confidence 666666655443322 222333355666666666666666666655433 35555555431
Q ss_pred -----------HHHHhhcCcchHHHHHHHhcchhhHHHHHHHHhcCChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHH
Q 047627 322 -----------HYIDLSLTKCGSFVVQNCLKYRITVNYIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQ 390 (422)
Q Consensus 322 -----------~~~~Ls~~k~GS~Vvek~l~~~~~r~~Ii~el~~~~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~ 390 (422)
.+.....++++-.|.|.|+..+......++.|++ .+--.+...+|.+-+|.+++..+. .+.+
T Consensus 787 pmfiikvi~~p~iel~f~dQf~kvvrq~il~~~a~~narv~~Lle---evgliSasksgs~s~q~~~sss~~----~~~q 859 (1007)
T KOG4574|consen 787 PMFIIKVITKPTIELAFRDQFIKVVRQVILNSPAVSNARVQRLLE---EVGLISASKSGSQSIQMHISSSKT----PFAQ 859 (1007)
T ss_pred cceeeeeeccccchHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH---HHhhhccccchhHHHHhhhccCCc----cccc
Confidence 1223345566677777777773323333366666 777777888888888888888877 3444
Q ss_pred HHHH
Q 047627 391 RLVT 394 (422)
Q Consensus 391 ~l~~ 394 (422)
+++.
T Consensus 860 rlls 863 (1007)
T KOG4574|consen 860 RLLS 863 (1007)
T ss_pred chhh
Confidence 4444
No 15
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=98.49 E-value=8e-08 Score=61.71 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=28.9
Q ss_pred HHHHHHHhhccccchHHHHHHHhhCCHHHHHHHH
Q 047627 132 VSEFTFQIICNQYARFVFGKFIETCNEDQLLRIT 165 (422)
Q Consensus 132 i~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~ 165 (422)
+.+++.+|+.|+|||||||++|+.++++++..|+
T Consensus 2 i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~il 35 (35)
T PF00806_consen 2 IKGNLVELSKDQYGNYVVQKCLEHASPEQRQLIL 35 (35)
T ss_dssp HTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHHH
T ss_pred hHHHHHHHHhccccCHHHHHHHHHCCHHHHHhhC
Confidence 5678889999999999999999998888887764
No 16
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=98.16 E-value=9.1e-07 Score=56.74 Aligned_cols=30 Identities=40% Similarity=0.468 Sum_probs=14.4
Q ss_pred HhHHhhhhcCChhHHHHHhhccCChhhHHH
Q 047627 285 VNAASLSRNFSGNYVVQHVLELEDPYLIET 314 (422)
Q Consensus 285 ~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ 314 (422)
+++..|+.|+|||||||++|+..++..++.
T Consensus 4 ~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~ 33 (35)
T PF00806_consen 4 GNLVELSKDQYGNYVVQKCLEHASPEQRQL 33 (35)
T ss_dssp TTHHHHHTSTTHHHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHhccccCHHHHHHHHHCCHHHHHh
Confidence 344445555555555555555444444433
No 17
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=98.13 E-value=1.7e-06 Score=55.44 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=27.4
Q ss_pred HHHHHHHhhccccchHHHHHHHhhCCHHHHHHHH
Q 047627 132 VSEFTFQIICNQYARFVFGKFIETCNEDQLLRIT 165 (422)
Q Consensus 132 i~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~ 165 (422)
+.+++.+|+.|+|||||+|++|+.++++++..++
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 4577888888888888888888888888777665
No 18
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.61 E-value=3.6e-05 Score=49.13 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=30.5
Q ss_pred chhHhhhcccCcccHHHHHhhcCCCHHHHHHHH
Q 047627 97 NSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVF 129 (422)
Q Consensus 97 ~~~v~~l~~d~~gsrvlQ~~L~~~~~e~~~~I~ 129 (422)
.|++.+||.|++||+++|++|+.++++++..|+
T Consensus 3 ~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 3 KGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred hHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 479999999999999999999999999988876
No 19
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=92.94 E-value=0.25 Score=42.60 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=41.4
Q ss_pred HHHHHHhhhHHHHhcCcCCcHHHHHHHhccChhhH---HHHHHHHHHh--------HHhhhhcCChhHHHHHhhccC
Q 047627 242 FIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRR---KQILYLISVN--------AASLSRNFSGNYVVQHVLELE 307 (422)
Q Consensus 242 ~i~~~l~~~~~~la~~~~Gs~vlq~ll~~~~~~~~---~~L~~~l~~~--------~~~L~~d~~Gn~VvQ~lL~~~ 307 (422)
.+++.+..+..++..+..||.+|..+|..+.++.. ..|++.+... -..++.+++|.+++.+++..+
T Consensus 57 ~Ll~~i~~~~~~ll~~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e~H~i~~p~~~r~lK~Liq~~ 133 (148)
T PF08144_consen 57 PLLEAIAENAEELLSSSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEEYHLIEHPFGHRMLKKLIQGD 133 (148)
T ss_pred HHHHHHHHhHHHHHhcCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCccchhcCchHHHHHHHHHHCC
Confidence 55666667778888888888888888888765432 2232222222 124556677777777776654
No 20
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=92.34 E-value=0.29 Score=42.21 Aligned_cols=67 Identities=9% Similarity=0.119 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHhcc-hhhHHHHHHHHhc---------CChhHHHhhcChhhhHHHHHHHhhcC
Q 047627 315 ICFSLRGHYIDLSLTKCGSFVVQNCLKY-RITVNYIVEEFLL---------NSDQIFRVACDKYGNYVIQTALIETM 381 (422)
Q Consensus 315 ii~~l~~~~~~Ls~~k~GS~Vvek~l~~-~~~r~~Ii~el~~---------~~~~l~~L~~d~~GnyVvq~~L~~~~ 381 (422)
+++.+..+..+|..+++|+.+|-.+|.. ..++...++++.. ....-..+..+++|++++-++++...
T Consensus 58 Ll~~i~~~~~~ll~~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e~H~i~~p~~~r~lK~Liq~~~ 134 (148)
T PF08144_consen 58 LLEAIAENAEELLSSSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEEYHLIEHPFGHRMLKKLIQGDK 134 (148)
T ss_pred HHHHHHHhHHHHHhcCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCccchhcCchHHHHHHHHHHCCC
Confidence 4444455566677777777777766666 2222222223322 11123578899999999999997765
No 21
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=83.17 E-value=49 Score=32.47 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhHHHHhc----hhhhHHHHHHHhhhc
Q 047627 387 HLHQRLVTKLQQNLDSLRF----GYGKHVYNFIKDCDL 420 (422)
Q Consensus 387 ~~~~~l~~~l~~~~~~L~~----~~G~~V~~~l~~~~~ 420 (422)
..++++-+.+...+..+.. .-|.-|-+.+++++.
T Consensus 290 ~l~~~i~~~i~~~l~~~v~~~~~~i~~~V~~~l~~~~~ 327 (367)
T PF04286_consen 290 ELREKINRFIENLLERIVESNHIDIGEIVEEKLNSLDD 327 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 5666666666655554433 557777777777664
No 22
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=82.38 E-value=54 Score=32.37 Aligned_cols=217 Identities=12% Similarity=0.085 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHHHHHHhhc-cccchHHHHHHHhh-CCHHHHHHHHHHHhhcCc--hHHHhhhcccchHHHHHHHHhhc
Q 047627 121 DSRFLDKVFNVVSEFTFQIIC-NQYARFVFGKFIET-CNEDQLLRITLQITSQDQ--LFVQASVDKFGSSSIRKLMKAVA 196 (422)
Q Consensus 121 ~~e~~~~I~~ei~~~~~~L~~-d~~gn~vvQkLi~~-~~~~q~~~i~~~l~~~~~--~i~~La~~~~Gs~VvQkll~~~~ 196 (422)
++++...++++....+..-.. ..-|.-.+..++.. .+.+.-..|++.+....+ .|-.|. .-....++.++....
T Consensus 56 s~~~~~~vL~ef~~~~~~~~~~~~gg~~~~~~iL~~~l~~~~a~~il~~i~~~~~~~~fe~L~--~ld~~~l~~lL~~Eh 133 (339)
T PRK05686 56 SPEQVEAVLEEFEDEFEAGAYILMGGIDYARSLLEKALGEEKADSILERILESLGTSGFDFLR--KMDPQQLANFIRNEH 133 (339)
T ss_pred CHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHcCHHHHHHHHHHHhccccCchHHHHh--cCCHHHHHHHHHhcC
Confidence 455666666666555544332 23344557888875 677777888877763211 222222 335566666666664
Q ss_pred CChhHHHHHHHHHHHHHH----HHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhHHHHh----cCcCCcHHHHHHH
Q 047627 197 NRPPLLDLVMKALKRLFR----LLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLA----CHEQGCINMNNFI 268 (422)
Q Consensus 197 ~~~~~~~~i~~~l~~~~~----~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~~~la----~~~~Gs~vlq~ll 268 (422)
++.+..+...+.+... ..+......-|+.++...-+...+....|-+.+...+..+. ...-|...+-.+|
T Consensus 134 --pqtiA~iLs~l~~~~aa~vL~~l~~~~~~~v~~ria~l~~v~~~~~~~i~~~L~~~l~~~~~~~~~~~~g~~~~a~Il 211 (339)
T PRK05686 134 --PQTIALILSYLKPDQAAEILSLLPEELRADVMMRIATLEGVSPEALKEVEEVLEKKLSSMANADRTKMGGVKTVAEIL 211 (339)
T ss_pred --HHHHHHHHhCCCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHhhcccccccccCcHHHHHHHH
Confidence 5555555544433332 22222222333333333221101222222233333333322 2345778888999
Q ss_pred hccChhhHHHHHHHHHHhHHhhhhcCC-hhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcc
Q 047627 269 DEMKGPRRKQILYLISVNAASLSRNFS-GNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY 342 (422)
Q Consensus 269 ~~~~~~~~~~L~~~l~~~~~~L~~d~~-Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~ 342 (422)
+.......+.++..+...=..++..-- --|+...++. -++.....+++.+-....-++..--..-+.+++|..
T Consensus 212 n~~~~~~~~~il~~L~~~d~~~a~~Ir~~mF~Fedl~~-l~~~~l~~ll~~v~~~~L~~ALkga~~~~~~~il~n 285 (339)
T PRK05686 212 NNLDRQTEKTILESLEEEDPELAEKIKDLMFVFEDLVD-LDDRSIQRLLREVDNDVLALALKGASEELREKFLSN 285 (339)
T ss_pred hcCCchHHHHHHHHHHhhCHHHHHHHHHHhcCHHHHhc-CCHHHHHHHHHhCCHHHHHHHHCCCCHHHHHHHHHh
Confidence 999888888888777653333332100 1122333332 234456666666666666666555556666666666
No 23
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=80.09 E-value=97 Score=33.85 Aligned_cols=41 Identities=7% Similarity=0.189 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHh
Q 047627 129 FNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQIT 169 (422)
Q Consensus 129 ~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~ 169 (422)
+++|+--+.+.-.|.-..-++|.|+.+.++.....-+..++
T Consensus 715 yeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~K 755 (1102)
T KOG1924|consen 715 YEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELK 755 (1102)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56777778888888888889999999988655444455566
No 24
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=57.24 E-value=1.2e+02 Score=30.62 Aligned_cols=61 Identities=28% Similarity=0.386 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhh-cCcchHHHHHHHhcc-hh----------------hHHHHHHH---Hhc--CChhHHHhhcChh
Q 047627 312 IETICFSLRGHYIDLS-LTKCGSFVVQNCLKY-RI----------------TVNYIVEE---FLL--NSDQIFRVACDKY 368 (422)
Q Consensus 312 ~~~ii~~l~~~~~~Ls-~~k~GS~Vvek~l~~-~~----------------~r~~Ii~e---l~~--~~~~l~~L~~d~~ 368 (422)
-+.+-+.|...+.+|+ .|.|-+-+-...|++ |. ....|++- +++ +++....+|++..
T Consensus 312 i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DI 391 (442)
T KOG2759|consen 312 IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDI 391 (442)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhH
Confidence 3456667777777774 568887777766666 21 12233333 333 4466677777777
Q ss_pred hhHH
Q 047627 369 GNYV 372 (422)
Q Consensus 369 GnyV 372 (422)
|.||
T Consensus 392 ge~V 395 (442)
T KOG2759|consen 392 GEYV 395 (442)
T ss_pred HHHH
Confidence 7776
No 25
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=56.01 E-value=2.2e+02 Score=28.39 Aligned_cols=86 Identities=10% Similarity=-0.105 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhHHhhhhc---CChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcc-hhhHHHHHH
Q 047627 276 RKQILYLISVNAASLSRN---FSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY-RITVNYIVE 351 (422)
Q Consensus 276 ~~~L~~~l~~~~~~L~~d---~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~-~~~r~~Ii~ 351 (422)
+-.++..+.......+.+ .+.-.++..++... .+.|.+.+..+.+-...+..++.-+..+..+++. .... .+++
T Consensus 154 rL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~-k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~ 231 (372)
T PF12231_consen 154 RLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSA-KDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG-KLIQ 231 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc-cHHH
Confidence 334444444444333322 23335555555433 3344444444444444444566666777777666 1112 4444
Q ss_pred HHhcCChhHHHhhcC
Q 047627 352 EFLLNSDQIFRVACD 366 (422)
Q Consensus 352 el~~~~~~l~~L~~d 366 (422)
.+.+ .+..|..+
T Consensus 232 ~~~~---~L~~mi~~ 243 (372)
T PF12231_consen 232 LYCE---RLKEMIKS 243 (372)
T ss_pred HHHH---HHHHHHhC
Confidence 4444 44444444
No 26
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=49.66 E-value=54 Score=30.97 Aligned_cols=49 Identities=12% Similarity=0.286 Sum_probs=21.6
Q ss_pred chHHHHHHHhh-------CCHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhc
Q 047627 145 ARFVFGKFIET-------CNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVA 196 (422)
Q Consensus 145 gn~vvQkLi~~-------~~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~ 196 (422)
+.|++||++.. |...+|..-+..+. ++++.-.......|.++.++.|..
T Consensus 159 AtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL---~~mV~~l~~~pS~RLLKhIIrCYl 214 (262)
T PF04078_consen 159 ATFILQKILLDDVGLNYICQTAERFFAVAMVL---NKMVEQLVKQPSPRLLKHIIRCYL 214 (262)
T ss_dssp HHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHH---HHHHHHHHHS--HHHHHHHHHHHH
T ss_pred HHHHHHHHHcchhHHHHHhcCHHHHHHHHHHH---HHHHHHHccCCChhHHHHHHHHHH
Confidence 56777777654 33223332222222 333332233335566665555554
No 27
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=47.22 E-value=2.5e+02 Score=29.50 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=8.8
Q ss_pred HHHHhhcCcchHHHHHHHh
Q 047627 322 HYIDLSLTKCGSFVVQNCL 340 (422)
Q Consensus 322 ~~~~Ls~~k~GS~Vvek~l 340 (422)
.+-.|-.+-||+-..|...
T Consensus 121 ~l~~mF~~tYg~ly~qn~~ 139 (563)
T KOG3821|consen 121 SLNAMFSKTYGSLYPQNAE 139 (563)
T ss_pred HHHHHHHhhhhhhhHHHHH
Confidence 3444444445555444433
No 28
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=46.65 E-value=2.3e+02 Score=26.97 Aligned_cols=195 Identities=9% Similarity=0.093 Sum_probs=0.0
Q ss_pred HhhcCCCHHHHHHHHHHHH-HHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHH
Q 047627 115 EKLTSGDSRFLDKVFNVVS-EFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMK 193 (422)
Q Consensus 115 ~~L~~~~~e~~~~I~~ei~-~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~ 193 (422)
+.|-.+++.+.+.+++++. +.+.+=..-+.-+.++.-=-+..-..-...+-..+. +++..+ ..-++|++..++.
T Consensus 42 q~L~~csp~q~e~lc~~L~l~~lsd~~l~~lc~~ll~Ls~dls~~~a~~l~~sl~L---pkilsL--~~~ASR~L~sal~ 116 (263)
T PF11510_consen 42 QFLNECSPSQVEMLCSQLQLPQLSDDGLLQLCSSLLALSPDLSHSNATVLLRSLFL---PKILSL--EEPASRLLVSALT 116 (263)
T ss_dssp HGGGG--HHHHHHHHHHHTGGG--HHHHHHHHHHHHH-SS---HHHHHHHHHHHHH---HHHHH---SS---HHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHccCcccchhhHHHHHHHHHH---HHHHhc--CCCccHHHHHHHH
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHH--HHhccCcchhhHHHHHHhhhHHHHhcCcCCcHHHHHHHhcc
Q 047627 194 AVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCL--EQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEM 271 (422)
Q Consensus 194 ~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l--~~~~~~~~~~~~i~~~l~~~~~~la~~~~Gs~vlq~ll~~~ 271 (422)
.+. ...-...+.-.+.|-+..-.......-++-+++ +++++ +.+..++..+. ++.-+..-..|+|.+++..
T Consensus 117 ~f~-k~~p~~~~~all~PlL~~~~~g~~Q~eLl~rlvk~~~l~p--~~~~l~l~~~L----~~~W~E~~~~Vlq~lL~~k 189 (263)
T PF11510_consen 117 SFC-KKYPRPVCEALLVPLLQAPGLGPPQCELLCRLVKKECLEP--DHRLLLLRQIL----ELVWNEETFLVLQSLLERK 189 (263)
T ss_dssp HHH-HHSHHHHHHHHHHHHHHSTT--HHHHHHHHHHHH-TTS-H--HHHHHHHHHHH----HS---HHHHHHHHHHHTT-
T ss_pred HHH-HhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCH--HHHHHHHHHHH----hCcCcHHHHHHHHHHHhcC
Q ss_pred Ch---hhHHHHHHHHHHhHHhhhhc-------------------CChhHHHHHhhccCChhhHHHHHHHHHH
Q 047627 272 KG---PRRKQILYLISVNAASLSRN-------------------FSGNYVVQHVLELEDPYLIETICFSLRG 321 (422)
Q Consensus 272 ~~---~~~~~L~~~l~~~~~~L~~d-------------------~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~ 321 (422)
.+ +....+++.+......++++ ++....++.+++....-.|+.+...++.
T Consensus 190 ~~l~~~~~~~l~~~L~~~a~~~skSlkFakLlLtvltKy~~~it~~~~~~L~~~l~~n~TfLkKsl~aaLk~ 261 (263)
T PF11510_consen 190 VELSQELFSLLVELLCEQAPQFSKSLKFAKLLLTVLTKYQSQITEAHKLSLAEALELNTTFLKKSLQAALKR 261 (263)
T ss_dssp ----HHHHHHHHHHHH--------SHHHHHHHHHHHHHTGGG--HHHHHHHHHHH-SSSSSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhHhhhcchHHHHHHHHHHHHcchhccHHHHHHHHHHHHhcchHHHHHHHHHHhh
No 29
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=45.15 E-value=3e+02 Score=26.77 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=18.2
Q ss_pred hHHHhhcC---hhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHHhHHH
Q 047627 359 QIFRVACD---KYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDS 402 (422)
Q Consensus 359 ~l~~L~~d---~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~~~~~ 402 (422)
.+..++.. ..|..|-+++=..... ++-+.+.+.+...+.-
T Consensus 302 ~l~~~v~~~~~~i~~~V~~~l~~~~~~----~l~~~i~~~v~~dL~~ 344 (367)
T PF04286_consen 302 LLERIVESNHIDIGEIVEEKLNSLDDE----ELEELIESKVGKDLQW 344 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHhHh
Confidence 44444444 4455555554333333 4444444555444443
No 30
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=44.31 E-value=3.2e+02 Score=26.89 Aligned_cols=218 Identities=13% Similarity=0.086 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcccc-chHHHHHHHhhC-CHHHHHHHHHHHhhc--Cc-hHHHhhhcccchHHHHHHHHh
Q 047627 120 GDSRFLDKVFNVVSEFTFQIICNQY-ARFVFGKFIETC-NEDQLLRITLQITSQ--DQ-LFVQASVDKFGSSSIRKLMKA 194 (422)
Q Consensus 120 ~~~e~~~~I~~ei~~~~~~L~~d~~-gn~vvQkLi~~~-~~~q~~~i~~~l~~~--~~-~i~~La~~~~Gs~VvQkll~~ 194 (422)
-++++...|++++...+..-..-.. |.-.++++++.. +++.-..|++.+... .. .+..|. .-....+-.++..
T Consensus 52 v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~~~~~~~~~~~~L~--~~~~~~la~~l~~ 129 (338)
T TIGR00207 52 IDNQQKDDVLEEFEQIAEAQAYINIGGLDYAREVLEKALGEEKAASILNDLTSSLQTAPGFEFLR--KAEPQQIADFIQQ 129 (338)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHHHhcCHHHHHHHHHHHhcccccCchhHHHH--CCCHHHHHHHHHc
Confidence 3566667777776666655433222 344567777653 555666777766521 11 133221 2234555555555
Q ss_pred hcCChhHHHHHHHHHHHHHHHHhcCCCc----cHHHHHHHHHhccCcchhhHHHHHHhhhHHHHh---cCcCCcHHHHHH
Q 047627 195 VANRPPLLDLVMKALKRLFRLLMMTKPG----SSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLA---CHEQGCINMNNF 267 (422)
Q Consensus 195 ~~~~~~~~~~i~~~l~~~~~~L~~d~~g----shViQ~~l~~~~~~~~~~~~i~~~l~~~~~~la---~~~~Gs~vlq~l 267 (422)
-. ++....|...+.+....-+-.... .-|+.++...-...++..+.|-+.+...+..+. ...-|...+..+
T Consensus 130 Eh--PQ~iAliLs~L~p~~AA~VL~~Lp~~~~~ei~~ria~l~~vs~~~i~~ie~~L~~~~~~~~~~~~~~gG~~~~a~I 207 (338)
T TIGR00207 130 EH--PQTIALILSHLDPAQAADILSLFPEEVQAEVARRIATMGRTSPEVVAEVERVLEGKLDSLNSDYTKMGGVRAVAEI 207 (338)
T ss_pred cC--HHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccccccCChHHHHHHH
Confidence 53 566666665554433222222122 222222222211101222222222233333332 223477888899
Q ss_pred HhccChhhHHHHHHHHHHhHHhhhhcC-ChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcc
Q 047627 268 IDEMKGPRRKQILYLISVNAASLSRNF-SGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY 342 (422)
Q Consensus 268 l~~~~~~~~~~L~~~l~~~~~~L~~d~-~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~ 342 (422)
|+..+....+.+++.+...=..++..- ---|+...++. -++...+.+++.+-....-++..--..-+.+++|..
T Consensus 208 LN~~~~~~~~~il~~L~~~dp~la~~Ir~~mF~Fedl~~-ld~~~l~~llrev~~~~L~~ALkga~~e~~~~il~n 282 (338)
T TIGR00207 208 INLMDRKTEKTIITSLEEFDPELAEEIKKEMFVFEDIVD-LDDRSIQRVLREVDSEDLLLALKGAEQPLREKFLNN 282 (338)
T ss_pred HHhCCchHHHHHHHHHHHhCHHHHHHHHHHccCHHHHhc-CCHHHHHHHHHhCCHHHHHHHHCcCCHHHHHHHHHH
Confidence 999988888888877765433333221 11133333333 234445556655555554444444444555555555
No 31
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=43.29 E-value=2.5e+02 Score=32.52 Aligned_cols=87 Identities=11% Similarity=0.117 Sum_probs=57.9
Q ss_pred ccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhcccch---HHHHHHHHhhcC----ChhHHHHHHHHHHHHH
Q 047627 141 CNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGS---SSIRKLMKAVAN----RPPLLDLVMKALKRLF 213 (422)
Q Consensus 141 ~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~~Gs---~VvQkll~~~~~----~~~~~~~i~~~l~~~~ 213 (422)
+-.-+=.++|.|-.+.+++. .++.+. ++++.+..|+++- ..+.++.+.+.. .+.....+.|+|.|++
T Consensus 439 tK~~ALeLl~~lS~~i~de~---~LDRVl---PY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEV---KLDRVL---PYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHH---HHhhhH---HHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 33334456677777766544 345566 8888999988764 344444444441 3455678889999999
Q ss_pred HHHhcCCCccHHHHHHHHHh
Q 047627 214 RLLMMTKPGSSVVLQCLEQI 233 (422)
Q Consensus 214 ~~L~~d~~gshViQ~~l~~~ 233 (422)
..|..|...++|--....++
T Consensus 513 ~~l~~d~~~~~vRiayAsnl 532 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNL 532 (1431)
T ss_pred HhhhccCccceehhhHHhhH
Confidence 99999987877765555554
No 32
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=43.27 E-value=30 Score=38.47 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=57.1
Q ss_pred hHHHHhcCcCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhh---------------------cCChhHHHHHhhccCC
Q 047627 250 HCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSR---------------------NFSGNYVVQHVLELED 308 (422)
Q Consensus 250 ~~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~---------------------d~~Gn~VvQ~lL~~~~ 308 (422)
.++.+...+-|=++|-|+|.+.+.+++..|+..|..++..|.. |.|-..|+..++.+-.
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l~vv~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~i~ 655 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQLDVVRRASYTDGEDQPLLIKRDDIELFLQAVMPPLMNVIN 655 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH-----------------HHHHHTTTTT--GGGGHHHS-HHHH
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhhcccccccccccccCccccchHhHHHHHHHHHHHHHHHHH
Confidence 3566777777889999999999999999999999998843321 2222233333222211
Q ss_pred hhhHHHHHH---HH--HHHHHHhhcCcchHHHHHHHhcc-hh-------------hHHHHHHHHhcC--ChhHHH-----
Q 047627 309 PYLIETICF---SL--RGHYIDLSLTKCGSFVVQNCLKY-RI-------------TVNYIVEEFLLN--SDQIFR----- 362 (422)
Q Consensus 309 ~~~~~~ii~---~l--~~~~~~Ls~~k~GS~Vvek~l~~-~~-------------~r~~Ii~el~~~--~~~l~~----- 362 (422)
.-.-..|+. .| ..++.-++++|+|--++-.+|.- .. .-..++..|+.. .+.+..
T Consensus 656 ~~~~~~i~gll~~~~~~~~~~~i~~tk~Gls~lt~llsRae~l~~~~~~~~~~~~~W~~~~~~lf~~l~~~~~~~~fp~~ 735 (808)
T PF09770_consen 656 EAPFNEIIGLLGLLINNNNVSFIAQTKFGLSLLTMLLSRAELLKQSGSSSEEEWSQWTEFYDQLFDSLEEPRLPSIFPPD 735 (808)
T ss_dssp HHHHHHHTTSTTT-S--HHHHHHHTSHHHHHHHHHHHHHHHHHHHT------HHHHHHHH--------------------
T ss_pred hCCHHHHHHHHHHHHhCCCceEEEEChHHHHHHHHHHHHHHHhhccCCCCHHHHHHhhhhhhhccccccccccccccccc
Confidence 111111111 11 24577789999999998887766 11 123444444440 011111
Q ss_pred -hhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 047627 363 -VACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQN 399 (422)
Q Consensus 363 -L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~~ 399 (422)
-..+.-.+||+|-+-..+-..+. ++..+|+.++++.
T Consensus 736 ~~~~~~~~~~vwq~la~~~~~~~~-~~q~~lv~~vrd~ 772 (808)
T PF09770_consen 736 SSINSGDDSYVWQFLAALALGASP-EQQQILVDEVRDR 772 (808)
T ss_dssp --------------------------------------
T ss_pred cccccccccccccccccccccccc-ccccccccccccc
Confidence 23345568998877666544332 6777777777764
No 33
>COG4399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.87 E-value=2.5e+02 Score=27.79 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=8.6
Q ss_pred hccChhhHHHHHHHHHHh
Q 047627 269 DEMKGPRRKQILYLISVN 286 (422)
Q Consensus 269 ~~~~~~~~~~L~~~l~~~ 286 (422)
+..+.+...+++.++..+
T Consensus 332 ~~fs~~~lE~lV~~Is~k 349 (376)
T COG4399 332 NTFSLERLEKLVLEISRK 349 (376)
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 333444555555555443
No 34
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=42.73 E-value=43 Score=36.39 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=21.5
Q ss_pred hcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 047627 180 VDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFR 214 (422)
Q Consensus 180 ~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~ 214 (422)
.+.-..-.+|.++..++ .+++...+.+ ++....
T Consensus 727 e~vLse~~iqnLik~lP-e~E~l~~L~e-~Kaeye 759 (1102)
T KOG1924|consen 727 EDVLSESMIQNLIKHLP-EQEQLNKLSE-LKAEYE 759 (1102)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHH-HHHhcc
Confidence 34445667888999888 6666666665 554433
No 35
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=42.49 E-value=3.4e+02 Score=26.66 Aligned_cols=88 Identities=19% Similarity=0.224 Sum_probs=46.2
Q ss_pred ChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcchhhHHHHHHHHhcCChhHHHhhcChhhhHHHH
Q 047627 295 SGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRITVNYIVEEFLLNSDQIFRVACDKYGNYVIQ 374 (422)
Q Consensus 295 ~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~~~~r~~Ii~el~~~~~~l~~L~~d~~GnyVvq 374 (422)
-|...+-.+|...+....+.++..|...=.++ +-.|-+++|.+.+ |+ . + ++.-.+.......+-++-
T Consensus 202 ~g~~~~a~Iln~~~~~~~~~il~~L~~~d~~~-----a~~Ir~~mF~Fed----l~-~-l--~~~~l~~ll~~v~~~~L~ 268 (339)
T PRK05686 202 GGVKTVAEILNNLDRQTEKTILESLEEEDPEL-----AEKIKDLMFVFED----LV-D-L--DDRSIQRLLREVDNDVLA 268 (339)
T ss_pred CcHHHHHHHHhcCCchHHHHHHHHHHhhCHHH-----HHHHHHHhcCHHH----Hh-c-C--CHHHHHHHHHhCCHHHHH
Confidence 46666777777777777777777776433332 2355555555511 00 0 0 112222223334455566
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHHh
Q 047627 375 TALIETMRPNSLHLHQRLVTKLQQN 399 (422)
Q Consensus 375 ~~L~~~~~~~~~~~~~~l~~~l~~~ 399 (422)
.+|+-+++ ++++.++..+.+.
T Consensus 269 ~ALkga~~----~~~~~il~nmS~R 289 (339)
T PRK05686 269 LALKGASE----ELREKFLSNMSKR 289 (339)
T ss_pred HHHCCCCH----HHHHHHHHhcCHH
Confidence 66666666 6666666555443
No 36
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=37.55 E-value=6.8e+02 Score=28.66 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHh
Q 047627 157 NEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLM 217 (422)
Q Consensus 157 ~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~ 217 (422)
+...|+++++.+.. -.--.+-.-+|-++.|-.+-.+.+ +....+++.+.+.|...+
T Consensus 456 tKa~RkrLvKal~~--vprt~ldllPyYsRlVAtl~~~M~---dvat~lv~~L~~eFr~~~ 511 (1128)
T KOG2051|consen 456 TKANRKRLVKALFV--VPRTRLDLLPYYSRLVATLSKCMP---DVATELVTMLRKEFRSHL 511 (1128)
T ss_pred cHHHHHHHHHhhhc--ccchhhhhhhHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHH
Confidence 46788888876551 222355567888888888888876 555555555555555444
No 37
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.70 E-value=6.4e+02 Score=27.86 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=54.0
Q ss_pred HHHHHhhcccc---chHHHHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHH
Q 047627 134 EFTFQIICNQY---ARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALK 210 (422)
Q Consensus 134 ~~~~~L~~d~~---gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~ 210 (422)
.++..|.+|.. +.+-+-.|++.++++-..++++.+. ..+.+++ |.|---|++.+...+...+.....+..
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~---~fv~dis-DeFKivvvdai~sLc~~fp~k~~~~m~--- 394 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQIS---SFVSDIS-DEFKIVVVDAIRSLCLKFPRKHTVMMN--- 394 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHH---HHHHhcc-ccceEEeHHHHHHHHhhccHHHHHHHH---
Confidence 36777777764 6677888999999999999998888 7777765 667777888887777633333333333
Q ss_pred HHHHHHhcCC
Q 047627 211 RLFRLLMMTK 220 (422)
Q Consensus 211 ~~~~~L~~d~ 220 (422)
.+..++++.
T Consensus 395 -FL~~~Lr~e 403 (865)
T KOG1078|consen 395 -FLSNMLREE 403 (865)
T ss_pred -HHHHHHHhc
Confidence 334455553
No 38
>PF15471 TMEM171: Transmembrane protein family 171
Probab=34.14 E-value=47 Score=31.32 Aligned_cols=13 Identities=54% Similarity=1.267 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCC
Q 047627 37 IHPSPPVPLYPQS 49 (422)
Q Consensus 37 ~~~~~~~~~~~~~ 49 (422)
|-||||||-||.+
T Consensus 218 iFPPPPPPYF~es 230 (319)
T PF15471_consen 218 IFPPPPPPYFPES 230 (319)
T ss_pred EcCCccCCCCCCC
Confidence 4588999999888
No 39
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=32.44 E-value=4.7e+02 Score=27.74 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchHHHh--hhcccchHHHHHHHHhhc
Q 047627 123 RFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQA--SVDKFGSSSIRKLMKAVA 196 (422)
Q Consensus 123 e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~L--a~~~~Gs~VvQkll~~~~ 196 (422)
.+...++.++...+..|-.+ .+.+|+.++..-+..--..+++... ..+..| +...|-..|+.++++...
T Consensus 51 ~~l~~~L~~L~~~Vs~Ld~~--~~~LV~ail~~~W~~~~~~~v~~y~---~Fl~~Lvsa~~~yl~~vl~~LV~~f~ 121 (563)
T PF05327_consen 51 SQLIRWLKALSSCVSLLDSS--CKQLVEAILSLNWLGRDEDFVEAYI---QFLINLVSAQPKYLSPVLSMLVKNFI 121 (563)
T ss_dssp HHHHHHHHHHHHGGGGG-SC--CHHHHHHHHT-TGGGS-HHHHHHHH---HHHHHHHHH-GGGHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhhhH--HHHHHHHHHcCCCCCCCHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 35666677777776666655 7888999988754222222333333 333333 356778889999999888
No 40
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=31.18 E-value=87 Score=34.05 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=28.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhcccc--------------hHHHHHHHHhhc
Q 047627 148 VFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFG--------------SSSIRKLMKAVA 196 (422)
Q Consensus 148 vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~~G--------------s~VvQkll~~~~ 196 (422)
.|.|+|..|.++++---+- +. +.|+.-+.|++| ++.++++++|..
T Consensus 46 sVeKfi~kCkpe~Kl~gLY-VI---DSIVRqsrhq~~~~kd~F~prf~~n~~~tf~~L~~c~~ 104 (894)
T KOG0132|consen 46 SVEKFIKKCKPEYKLPGLY-VI---DSIVRQSRHQFGKEKDVFGPRFSKNFTGTFQNLYECPQ 104 (894)
T ss_pred HHHHHHHhCCcccccCeeE-Ee---hHHHHHHHHhhcccccccCCccchhHHHHHHHHHhcCH
Confidence 4678888899887743322 22 455555556655 456677777765
No 41
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=30.93 E-value=3.2e+02 Score=25.87 Aligned_cols=27 Identities=4% Similarity=0.188 Sum_probs=13.3
Q ss_pred HHHHhhcCCCHHHHHHHH-HHHHHHHHH
Q 047627 112 YLQEKLTSGDSRFLDKVF-NVVSEFTFQ 138 (422)
Q Consensus 112 vlQ~~L~~~~~e~~~~I~-~ei~~~~~~ 138 (422)
||-.+++.++.+....++ .||.|....
T Consensus 148 VIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 148 VIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 555666666666433332 344444333
No 42
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=30.48 E-value=2.9e+02 Score=22.40 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=44.3
Q ss_pred hhcccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhcccc--chH--HHHHHHhh----CCHHHHHHHHHHHh
Q 047627 102 LLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQY--ARF--VFGKFIET----CNEDQLLRITLQIT 169 (422)
Q Consensus 102 ~l~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~--gn~--vvQkLi~~----~~~~q~~~i~~~l~ 169 (422)
-|+.++..-+.|.+++...+....+.++++....+.++...+- |++ ++|.++.+ .+.+++..+.+.+.
T Consensus 4 lma~s~~~y~~lg~~va~~~~~~~~~~~~~Y~~~l~~al~~~~~~~~~~Nvl~Hi~Gyfk~~ls~~EK~~~~~~i~ 79 (117)
T PF08349_consen 4 LMAHSQKIYRELGRLVANAGKRPLEEVFEEYEELLMEALSKPPTRGSHINVLQHIFGYFKKKLSSEEKQHFLDLIE 79 (117)
T ss_pred eeeCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3688889999999999998776666777776666665444432 333 34555544 56666666665544
No 43
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.47 E-value=8.2e+02 Score=27.46 Aligned_cols=190 Identities=13% Similarity=0.131 Sum_probs=92.7
Q ss_pred HHHHHHHhhcCChhHHHHHHHHH--------HHHHHHHhcCCCccHHHHHHHHHhccC-cchhhHHHHHHhhhHHHHhcC
Q 047627 187 SIRKLMKAVANRPPLLDLVMKAL--------KRLFRLLMMTKPGSSVVLQCLEQIYHH-NNKNDFIYQAALEHCLYLACH 257 (422)
Q Consensus 187 VvQkll~~~~~~~~~~~~i~~~l--------~~~~~~L~~d~~gshViQ~~l~~~~~~-~~~~~~i~~~l~~~~~~la~~ 257 (422)
+|+.++.... .+.....+.+.+ ...+...++++. +++++++.+.+. ....+.-.......++.++.+
T Consensus 149 ~v~~~l~hi~-~stlMD~Llkli~~de~~~p~~~Viq~l~d~~---li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~ 224 (838)
T KOG2073|consen 149 FVDLFLKHID-ISTLMDFLLKLISTDEPESPRTDVIQWLNDQE---LIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRN 224 (838)
T ss_pred HHHHHHHHcC-ccHHHHHHHHhccccCCCCchHHHHHHHhhHH---HHHHHHHHhCCccccchhHHHHHHHHHHHhcccc
Confidence 3444444444 444444444433 134455555554 778888877551 122333334444455666666
Q ss_pred cCCcHHHHHHHhccChhhHHHHHHHHHH-------------hHHhhhh---cCChhHHHHHhhcc----CChhhHHHHHH
Q 047627 258 EQGCINMNNFIDEMKGPRRKQILYLISV-------------NAASLSR---NFSGNYVVQHVLEL----EDPYLIETICF 317 (422)
Q Consensus 258 ~~Gs~vlq~ll~~~~~~~~~~L~~~l~~-------------~~~~L~~---d~~Gn~VvQ~lL~~----~~~~~~~~ii~ 317 (422)
.-|...+.+-|.. ++...+|+.-++. .++.+.. +.....-.+.++.. .++-....++.
T Consensus 225 ~~gPn~L~~qL~s--~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~ 302 (838)
T KOG2073|consen 225 QPGPNPLTKQLES--PETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSERDPIVLNELLG 302 (838)
T ss_pred cCCCCHHHHhhcC--HHHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCccccCccchHHHHH
Confidence 6677766666553 3333333333322 1111111 11111001222222 23345667777
Q ss_pred HHHHHH---HHhhcCcchHHHHHHHhcc-----hhhHHHHHH---HHhc--CChhHHHhhcChhhhHHHHHHHhhcCC
Q 047627 318 SLRGHY---IDLSLTKCGSFVVQNCLKY-----RITVNYIVE---EFLL--NSDQIFRVACDKYGNYVIQTALIETMR 382 (422)
Q Consensus 318 ~l~~~~---~~Ls~~k~GS~Vvek~l~~-----~~~r~~Ii~---el~~--~~~~l~~L~~d~~GnyVvq~~L~~~~~ 382 (422)
.+.+++ ..|-...=+-.+++.-+.. +..|-+|++ +|+. +..-...++...|.+.++..+.+....
T Consensus 303 ~~~p~L~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~n 380 (838)
T KOG2073|consen 303 AMEPRLGDFVQLLLEPEKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWN 380 (838)
T ss_pred HHHHHHHHHHHHhcCCccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchh
Confidence 777654 4444555555455554444 334555444 4444 344556666666677777777777665
No 44
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.24 E-value=3.3e+02 Score=25.95 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=21.4
Q ss_pred ccccccccccccccccCCCCCCccccCCCCCCCCCCCCC
Q 047627 11 ETQLNNLSLSFENLQVNDPSYSSFNEIHPSPPVPLYPQS 49 (422)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (422)
++--.+.-.|+.||- -||-||.+-.=+..||-+|..
T Consensus 212 ~~~yiS~~~S~ns~~---qs~~s~s~s~~~S~pP~~pa~ 247 (338)
T KOG0917|consen 212 TGIYISHEPSPNSLP---QSYPSFSESSLPSTPPGAPAP 247 (338)
T ss_pred CcceeecccCccccc---ccccccccccCCCCCCCCccc
Confidence 344455556677775 478888776555545554444
No 45
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=29.18 E-value=6.2e+02 Score=25.64 Aligned_cols=38 Identities=13% Similarity=-0.058 Sum_probs=23.2
Q ss_pred ccCChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcc
Q 047627 305 ELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY 342 (422)
Q Consensus 305 ~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~ 342 (422)
...++++.+++|.++.-.+.-++...-+|+-++.+-+.
T Consensus 207 ~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~ 244 (460)
T KOG2213|consen 207 NVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKH 244 (460)
T ss_pred cCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhh
Confidence 34455666666666666666666666666666554443
No 46
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=27.65 E-value=7.5e+02 Score=26.11 Aligned_cols=92 Identities=14% Similarity=0.169 Sum_probs=50.3
Q ss_pred hhHHHHHhhccCChhhHHHHHHHHH--HHHHHhh----cCcchHHHHHHHhcchhhHHHHHHHHhcCChhHHHhhcChhh
Q 047627 296 GNYVVQHVLELEDPYLIETICFSLR--GHYIDLS----LTKCGSFVVQNCLKYRITVNYIVEEFLLNSDQIFRVACDKYG 369 (422)
Q Consensus 296 Gn~VvQ~lL~~~~~~~~~~ii~~l~--~~~~~Ls----~~k~GS~Vvek~l~~~~~r~~Ii~el~~~~~~l~~L~~d~~G 369 (422)
|+-||.......-.+....-+-++. .++.-+. |.-|=.+|+.-|+....+-+.-..+++. .+..|+.--+|
T Consensus 230 g~eVv~~~~~v~~s~~C~raLlkM~yCp~CqGl~~~kPC~gYC~NVmrGClA~~adLd~~W~~~id---Sl~~L~~~l~g 306 (563)
T KOG3821|consen 230 GIEVVSEVDKVPFSEECSRALLKMIYCPHCQGLPSVKPCYGYCLNVMRGCLANQADLDPEWRNYID---SLLELADKLEG 306 (563)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCccCCcHHHHHHHHHHHhhhhcccchHHHHHHH---HHHHHHHhhcC
Confidence 4455555555543333333222222 2333332 4446678888888882224444555555 66667777777
Q ss_pred hHHHHHHHhhcCCCCcHHHHHHHHH
Q 047627 370 NYVIQTALIETMRPNSLHLHQRLVT 394 (422)
Q Consensus 370 nyVvq~~L~~~~~~~~~~~~~~l~~ 394 (422)
.|=|..++..... ...+.|+.
T Consensus 307 ~~~iesvl~~i~v----~iseAIm~ 327 (563)
T KOG3821|consen 307 PFNIESVLLPIHV----KISEAIMA 327 (563)
T ss_pred cchHHHHHhhhhh----HHHHHHHH
Confidence 7777777766665 45555443
No 47
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=27.03 E-value=48 Score=33.50 Aligned_cols=18 Identities=33% Similarity=0.539 Sum_probs=9.6
Q ss_pred ccCCCCCCCC-CCCCCccc
Q 047627 35 NEIHPSPPVP-LYPQSTWA 52 (422)
Q Consensus 35 ~~~~~~~~~~-~~~~~~~~ 52 (422)
+.+-|||||| ++|...|.
T Consensus 232 ~~g~PPPPPP~PPp~~~~~ 250 (480)
T KOG2675|consen 232 APGAPPPPPPAPPPAPFFA 250 (480)
T ss_pred CCCCCCCCCCCCCCccccc
Confidence 4444555555 55555665
No 48
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=26.70 E-value=4.1e+02 Score=24.55 Aligned_cols=127 Identities=15% Similarity=0.142 Sum_probs=66.0
Q ss_pred CCcHHHHHHHhccChhh---HHHHHHHHHHhHHhhhhcC-ChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHH
Q 047627 259 QGCINMNNFIDEMKGPR---RKQILYLISVNAASLSRNF-SGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSF 334 (422)
Q Consensus 259 ~Gs~vlq~ll~~~~~~~---~~~L~~~l~~~~~~L~~d~-~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~ 334 (422)
.||..+..++....+.. -..++..+.+.+.++ |+ .|...-..++.. ......+...--.-+..|+.++.|=.
T Consensus 83 vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~--d~~~g~~~~~~lfs~--~~l~~tl~~~Yf~~IG~lS~~~~Gl~ 158 (226)
T PF14666_consen 83 VGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQV--DPMSGITAHDPLFSP--QRLSTTLSRGYFLFIGVLSSTPNGLK 158 (226)
T ss_pred HHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHH--hhhcCCcccccccCH--HHHHhhHHHHHHHHHHHHhCChhHHH
Confidence 48888888888743222 123333333333222 11 122222222221 11223333333444678899999998
Q ss_pred HHHHH--hcc------hhhHHHHHHHHhcCChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 047627 335 VVQNC--LKY------RITVNYIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQ 397 (422)
Q Consensus 335 Vvek~--l~~------~~~r~~Ii~el~~~~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~ 397 (422)
++|+. +.. ...+..++.-++. . .+...+....-+++++|..... ..|..-.+-|+
T Consensus 159 lLe~~~if~~l~~i~~~~~~~~l~klil~---~-LDY~~~~~~R~iLsKaLt~~s~----~iRl~aT~~L~ 221 (226)
T PF14666_consen 159 LLERWNIFTMLYHIFSLSSRDDLLKLILS---S-LDYSVDGHPRIILSKALTSGSE----SIRLYATKHLR 221 (226)
T ss_pred HHHHCCHHHHHHHHHccCchHHHHHHHHh---h-CCCCCccHHHHHHHHHHhcCCH----HHHHHHHHHHH
Confidence 88872 111 1234555555554 2 2455567777788888888777 55555444443
No 49
>COG4399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.14 E-value=6.6e+02 Score=24.95 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=20.1
Q ss_pred HHHHHHHhHHhhhhcCChhHHHHHhhccC
Q 047627 279 ILYLISVNAASLSRNFSGNYVVQHVLELE 307 (422)
Q Consensus 279 L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~ 307 (422)
+.+.+.+.+..+..++-..-++|.++...
T Consensus 213 ~~drl~~ellkl~~~~~t~kilq~Ll~ne 241 (376)
T COG4399 213 LADRLQQELLKLLNREETKKILQQLLTNE 241 (376)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 44666666777777777777777777654
No 50
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=25.93 E-value=4.1e+02 Score=22.54 Aligned_cols=83 Identities=13% Similarity=0.110 Sum_probs=52.7
Q ss_pred cccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhccc
Q 047627 104 AQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKF 183 (422)
Q Consensus 104 ~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~~ 183 (422)
..+.+=...+.-+|+-..|...-.|++.+.. ..--.+..|+..+..++..-+.++...+++.++ +--++.-
T Consensus 8 l~~~~y~~Al~LAl~L~~P~~ll~i~~~~~~--~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir-------~WNTNsr 78 (141)
T PF08625_consen 8 LRQKDYKEALRLALKLDHPFRLLKILKDLLE--TEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIR-------DWNTNSR 78 (141)
T ss_pred HHhhhHHHHHHHHHhcCCcHHHHHHHHHHHh--cccccccchHHHHHHHHHhcCHHHHHHHHHHHH-------Hhhcccc
Confidence 3344445566777777777777777777664 112233347889999999999999988887766 2223334
Q ss_pred chHHHHHHHHhh
Q 047627 184 GSSSIRKLMKAV 195 (422)
Q Consensus 184 Gs~VvQkll~~~ 195 (422)
-|+|-|.++..+
T Consensus 79 ~~~vAQ~vL~~i 90 (141)
T PF08625_consen 79 TSHVAQRVLNAI 90 (141)
T ss_pred cHHHHHHHHHHH
Confidence 455555544433
No 51
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=23.05 E-value=9.5e+02 Score=25.76 Aligned_cols=285 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH----------HHHHhhccccchHH-------HHHHHhhCCHHHHHHHHHHHhhcCchH
Q 047627 113 LQEKLTSGDSRFLDKVFNVVSE----------FTFQIICNQYARFV-------FGKFIETCNEDQLLRITLQITSQDQLF 175 (422)
Q Consensus 113 lQ~~L~~~~~e~~~~I~~ei~~----------~~~~L~~d~~gn~v-------vQkLi~~~~~~q~~~i~~~l~~~~~~i 175 (422)
|-+++++.++--|+-++-.|+. ..-.+|+|-.|..- +..|+...+.+....+-+.+. .-+
T Consensus 70 i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~---~a~ 146 (898)
T COG5240 70 ILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLN---QAF 146 (898)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhhcchhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhh---hhc
Q ss_pred HHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhc----------CCCccHHHH-HHHHHhccCcchhhHHH
Q 047627 176 VQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMM----------TKPGSSVVL-QCLEQIYHHNNKNDFIY 244 (422)
Q Consensus 176 ~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~----------d~~gshViQ-~~l~~~~~~~~~~~~i~ 244 (422)
+.-.......-++-..-=... ...+.....++....+..+.. .++|+++-| ..+..+.. ..+..-+
T Consensus 147 Vs~~~a~~saalv~aYhLlp~-~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq--~kr~dkm 223 (898)
T COG5240 147 VSTSMARRSAALVVAYHLLPN-NFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQ--SKRTDKM 223 (898)
T ss_pred cccchhhhhhHHHHhhhhccc-cHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHH--HhcccHH
Q ss_pred HHHhhhHHHHhcCcCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHHHHH
Q 047627 245 QAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYI 324 (422)
Q Consensus 245 ~~l~~~~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~ 324 (422)
..+ ..++.+-...+-...-.-+..+..-...|-.|+-.---+-.+|...-...-+.+.-.....++
T Consensus 224 a~l--------------klv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~ 289 (898)
T COG5240 224 AQL--------------KLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVC 289 (898)
T ss_pred HHH--------------HHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Q ss_pred HhhcCcchHHHHHHHhcc------------hhhHHHHHHHHhc--------CChhHHHhhcChh---hhHHHHHHHhhcC
Q 047627 325 DLSLTKCGSFVVQNCLKY------------RITVNYIVEEFLL--------NSDQIFRVACDKY---GNYVIQTALIETM 381 (422)
Q Consensus 325 ~Ls~~k~GS~Vvek~l~~------------~~~r~~Ii~el~~--------~~~~l~~L~~d~~---GnyVvq~~L~~~~ 381 (422)
.++..-.|+..++..+.. .-.--+|+.+|.- +..+++.|..|.. +-|.|.++|+..+
T Consensus 290 ~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt 369 (898)
T COG5240 290 ALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGT 369 (898)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCc
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHhchhhhHHHHHHHhhhcc
Q 047627 382 RPNSLHLHQRLVTKLQQNLDSLRFGYGKHVYNFIKDCDLQ 421 (422)
Q Consensus 382 ~~~~~~~~~~l~~~l~~~~~~L~~~~G~~V~~~l~~~~~~ 421 (422)
+ +--.+|+..|-..+.++...|-.-+++.++..+++
T Consensus 370 ~----e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~ 405 (898)
T COG5240 370 E----ETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLL 405 (898)
T ss_pred h----hhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhh
No 52
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=20.83 E-value=6.2e+02 Score=25.68 Aligned_cols=143 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHH-hccCcchhhHHHHHHhhhHHHHhcCcCCcHHHHHHHhccChhhHHHHHHHHHH
Q 047627 207 KALKRLFRLLMMTKPGSSVVLQCLEQ-IYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISV 285 (422)
Q Consensus 207 ~~l~~~~~~L~~d~~gshViQ~~l~~-~~~~~~~~~~i~~~l~~~~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~ 285 (422)
+.+.+.+.+.+.+.+=..+.+.+-.. ... ...-.+++.+++.+..+. +.+.-+.+-+.. ....|.+++..
T Consensus 22 ~~~~~~vk~~~~~afWd~l~~el~~~~~~~--~~~~~Ll~~ike~L~~ll----~~~~~~~I~e~L---D~~li~Qq~~~ 92 (441)
T PF05794_consen 22 DSLEGRVKETMHKAFWDALREELEQDPPDY--SRLPQLLEEIKEILLSLL----PSRLRQEIEEVL---DLELIRQQLEH 92 (441)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCh--hHHHHHHHHHHHHHHHhc----CHHHHHHHHHHC---ChHHHHHHHhc
Q ss_pred hHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcchhhHHHHHHHHhcCChhHHHhhc
Q 047627 286 NAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKYRITVNYIVEEFLLNSDQIFRVAC 365 (422)
Q Consensus 286 ~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~~~~r~~Ii~el~~~~~~l~~L~~ 365 (422)
.... ...+..|++..+-+++.| .|+..++.+...+.+=+....+..+|+. +..++ .+.++++
T Consensus 93 g~~D--~~~l~~~i~~~l~~~CAP-~RD~~v~~l~~~~~~~~~~~~~~~~V~~-----------lr~if----~~le~Mk 154 (441)
T PF05794_consen 93 GVLD--LVKLARFIISLLKKLCAP-MRDEEVKALVEKIEEGCTESSATDIVDG-----------LRFIF----EILELMK 154 (441)
T ss_pred CCcC--HHHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHhccccCCHHHHHHH-----------HHHHH----HHHHHHH
Q ss_pred ChhhhHHHHHH
Q 047627 366 DKYGNYVIQTA 376 (422)
Q Consensus 366 d~~GnyVvq~~ 376 (422)
--.+||.|+.+
T Consensus 155 lD~AN~~i~~~ 165 (441)
T PF05794_consen 155 LDMANFQIRSL 165 (441)
T ss_pred HHHHHHHHHHH
Done!