Query 047627
Match_columns 422
No_of_seqs 199 out of 1551
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 23:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 9.1E-65 3.1E-69 501.3 25.1 319 92-422 21-346 (351)
2 3k62_A FEM-3 mRNA-binding fact 100.0 3.9E-63 1.3E-67 496.6 25.7 320 94-420 25-404 (412)
3 3bwt_A Protein PUF4; pumilio, 100.0 2.8E-63 9.5E-68 487.5 24.1 322 87-416 3-332 (333)
4 3k49_A MRNA-binding protein PU 100.0 1.7E-62 6E-67 488.1 22.0 317 91-419 25-361 (369)
5 3v71_A PUF (pumilio/FBF) domai 100.0 6.3E-62 2.1E-66 484.6 25.3 328 84-418 5-381 (382)
6 3gvo_A Pumilio 2, pumilio homo 100.0 1.3E-42 4.6E-47 342.7 21.2 281 91-382 56-345 (351)
7 3k49_A MRNA-binding protein PU 100.0 7.5E-43 2.6E-47 346.8 17.3 298 108-419 3-324 (369)
8 3bwt_A Protein PUF4; pumilio, 100.0 6.3E-41 2.2E-45 328.6 23.9 277 127-418 6-294 (333)
9 3v71_A PUF (pumilio/FBF) domai 100.0 2.7E-40 9.1E-45 328.8 18.9 281 129-419 13-327 (382)
10 3k62_A FEM-3 mRNA-binding fact 100.0 5.5E-38 1.9E-42 314.4 26.4 276 133-419 28-347 (412)
11 3hjl_A Flagellar motor switch 56.8 1.3E+02 0.0044 28.2 12.5 235 117-353 49-294 (329)
12 2fv2_A RCD1 required for cell 50.2 50 0.0017 30.0 7.7 50 144-196 164-220 (268)
13 2ilr_A Protein FACE, fanconi a 48.6 1.6E+02 0.0053 26.7 13.6 186 115-321 42-261 (264)
14 3u0r_A Apoptosis inhibitor 5; 28.3 4.5E+02 0.015 26.1 11.2 184 149-341 67-267 (507)
15 3pkr_A FLIG, flagellar motor s 23.6 2.9E+02 0.01 25.1 8.4 209 109-319 21-238 (279)
16 2kw0_A CCMH protein; oxidoredu 23.0 27 0.00091 26.3 1.0 27 123-149 44-75 (90)
17 2hl7_A Cytochrome C-type bioge 22.4 27 0.00091 25.9 0.9 27 123-149 47-78 (84)
18 1k1a_A B-cell lymphoma 3-encod 21.9 2.7E+02 0.0093 23.2 7.8 63 104-166 4-67 (241)
19 4fhr_B Flagellar motor switch 20.5 3.9E+02 0.013 23.1 8.4 96 113-210 8-110 (216)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=9.1e-65 Score=501.25 Aligned_cols=319 Identities=24% Similarity=0.410 Sum_probs=302.8
Q ss_pred hhhhcchhHhhhcccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhc
Q 047627 92 FQHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQ 171 (422)
Q Consensus 92 f~~l~~~~v~~l~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~ 171 (422)
+.++. |+++++|+||+|||+||++|+.+++++++.||+++.+++.+||+|+||||||||++++|+++++..|++.+.
T Consensus 21 l~~~~-g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~-- 97 (351)
T 3gvo_A 21 LRDLI-GHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIR-- 97 (351)
T ss_dssp GGGGT-TCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHT--
T ss_pred HHHHH-hHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHH--
Confidence 56775 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhH
Q 047627 172 DQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHC 251 (422)
Q Consensus 172 ~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~ 251 (422)
|++++|+.|+|||+|+|++++.+. .++...+.+++.+++..|++|++||||+|++++..++ +.+..|++.+.+++
T Consensus 98 -g~~~~l~~~~~G~rvvQk~le~~~--~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~--~~~~~i~~~~~~~~ 172 (351)
T 3gvo_A 98 -GHVLPLALQMYGCRVIQKALESIS--SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQP--QSLQFIIDAFKGQV 172 (351)
T ss_dssp -TCHHHHHTSTTHHHHHHHHHHHSC--HHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCG--GGTHHHHHHTTTTH
T ss_pred -hhHHHHhhCHHhHHHHHHHHHhCC--HHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCH--HHHHHHHHHHHHHH
Confidence 999999999999999999999998 4555667777999999999999999999999999988 89999999999999
Q ss_pred HHHhcCcCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcc
Q 047627 252 LYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKC 331 (422)
Q Consensus 252 ~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~ 331 (422)
..+++|+|||+|+|++|++++++++..+++++.+++..|++|+|||||||++|+.++++.++.|++.+.+++..||++||
T Consensus 173 ~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~ 252 (351)
T 3gvo_A 173 FVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKF 252 (351)
T ss_dssp HHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTT
T ss_pred HHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcc--hhhHHHHHHHHhcC----ChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHHhHHHHhc
Q 047627 332 GSFVVQNCLKY--RITVNYIVEEFLLN----SDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNLDSLRF 405 (422)
Q Consensus 332 GS~Vvek~l~~--~~~r~~Ii~el~~~----~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~~~~~L~~ 405 (422)
||+|||+||+. +..|..|+++++.. .+.+..|+.|+|||||||++|+.+++ .+++.|++.|+|+++.|+.
T Consensus 253 gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~----~~r~~i~~~i~~~~~~L~~ 328 (351)
T 3gvo_A 253 ASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP----AQRKIIMHKIRPHITTLRK 328 (351)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCH----HHHHHHHHHHGGGHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHhc
Confidence 99999999999 67899999999961 13799999999999999999999988 8999999999999999999
Q ss_pred -hhhhHHHHHHHhhhccC
Q 047627 406 -GYGKHVYNFIKDCDLQN 422 (422)
Q Consensus 406 -~~G~~V~~~l~~~~~~~ 422 (422)
+||++|+++++++--++
T Consensus 329 ~~~g~~i~~kl~~~~~~~ 346 (351)
T 3gvo_A 329 YTYGKHILAKLEKYYLKN 346 (351)
T ss_dssp STTTHHHHHHHHHHTC--
T ss_pred CCchHHHHHHHHHHHhhc
Confidence 99999999999986553
No 2
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=3.9e-63 Score=496.58 Aligned_cols=320 Identities=18% Similarity=0.267 Sum_probs=289.5
Q ss_pred hhcchhHhhhcccCcccHHHHHhhcCC-CHHHHHHHHHHHHHH---HHHhhccccchHHHHHHHhhCCH-------HHHH
Q 047627 94 HCANSGILLLAQDEQGSQYLQEKLTSG-DSRFLDKVFNVVSEF---TFQIICNQYARFVFGKFIETCNE-------DQLL 162 (422)
Q Consensus 94 ~l~~~~v~~l~~d~~gsrvlQ~~L~~~-~~e~~~~I~~ei~~~---~~~L~~d~~gn~vvQkLi~~~~~-------~q~~ 162 (422)
.+.+|+++++|+||+|||+||+.|+.+ ++++++.||+|+.++ +.+||+|+|||||||||+++|++ +++.
T Consensus 25 ~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~ 104 (412)
T 3k62_A 25 VLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQE 104 (412)
T ss_dssp HHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHH
T ss_pred HHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHH
Confidence 333689999999999999999999997 899999999999874 89999999999999999999999 9999
Q ss_pred HHHHHHhhcCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHH--HHHHHHHhcCCCccHHHHHHHHHhccCcchh
Q 047627 163 RITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKAL--KRLFRLLMMTKPGSSVVLQCLEQIYHHNNKN 240 (422)
Q Consensus 163 ~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l--~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~ 240 (422)
.|++.+. |+++.|+.|+|||+|||++++.+. +++...+.+++ .+++..|++|++||||||+|++.++. +.+
T Consensus 105 ~i~~~l~---g~v~~L~~~~~GsrvvQk~le~~~--~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~--~~~ 177 (412)
T 3k62_A 105 KLKNFIS---SQMTDMCLDKFACRVIQSSLQNMD--LSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPL--KNW 177 (412)
T ss_dssp HHHHHHH---HTHHHHHHSTTHHHHHHHHHHHSC--HHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCH--HHH
T ss_pred HHHHHHH---HHHHHHHcChhhhHHHHHHHHhCC--HHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCH--HHH
Confidence 9999999 999999999999999999999987 56777777778 79999999999999999999999988 899
Q ss_pred hHHHHHHh--hhHHHHhcCcCCcHHHHHHHhccCh------------hhHH----HHHHHHHHhHHhhhhcCChhHHHHH
Q 047627 241 DFIYQAAL--EHCLYLACHEQGCINMNNFIDEMKG------------PRRK----QILYLISVNAASLSRNFSGNYVVQH 302 (422)
Q Consensus 241 ~~i~~~l~--~~~~~la~~~~Gs~vlq~ll~~~~~------------~~~~----~L~~~l~~~~~~L~~d~~Gn~VvQ~ 302 (422)
++|++.+. +++.++|+|+|||+|+|+||+++++ +++. .|++++..++..|+.|+|||||||+
T Consensus 178 ~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~ 257 (412)
T 3k62_A 178 EFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQH 257 (412)
T ss_dssp HHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHH
T ss_pred HHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHH
Confidence 99999998 5999999999999999999999874 2343 5678888999999999999999999
Q ss_pred hhccCChh-hHHHHHH-HHHHHHHHhhcCcchHHHHHHHhcc--hhhHHHHHHHHhc--------CChhHHHhhcChhhh
Q 047627 303 VLELEDPY-LIETICF-SLRGHYIDLSLTKCGSFVVQNCLKY--RITVNYIVEEFLL--------NSDQIFRVACDKYGN 370 (422)
Q Consensus 303 lL~~~~~~-~~~~ii~-~l~~~~~~Ls~~k~GS~Vvek~l~~--~~~r~~Ii~el~~--------~~~~l~~L~~d~~Gn 370 (422)
+|+++.+. .|..|+. .+.+++++||++||||+||||||+. ++.|..|++|++. +.+.+..|+.|+|||
T Consensus 258 iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGN 337 (412)
T 3k62_A 258 IVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGN 337 (412)
T ss_dssp HHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHH
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhccCCccccchHHHHHhcCCchH
Confidence 99998875 5788887 5999999999999999999999998 6678999999985 134699999999999
Q ss_pred HHHHHHHhhcCCC--Cc--------------HHHHHHHHHHHHHhHHHHhc-hhhhHHHHHHHhhhc
Q 047627 371 YVIQTALIETMRP--NS--------------LHLHQRLVTKLQQNLDSLRF-GYGKHVYNFIKDCDL 420 (422)
Q Consensus 371 yVvq~~L~~~~~~--~~--------------~~~~~~l~~~l~~~~~~L~~-~~G~~V~~~l~~~~~ 420 (422)
||||++|+.+++. +. ..+++.|+++++++...|+. +|||+|++++++...
T Consensus 338 YViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk~i~~~l~~~~~ 404 (412)
T 3k62_A 338 YVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGKKMIETLANLRS 404 (412)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHhhc
Confidence 9999999999652 00 13678999999999999999 999999999998765
No 3
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=2.8e-63 Score=487.52 Aligned_cols=322 Identities=25% Similarity=0.416 Sum_probs=302.1
Q ss_pred CCCCchhhhcchhHhhhcccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHH
Q 047627 87 FQANPFQHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITL 166 (422)
Q Consensus 87 ~~~~~f~~l~~~~v~~l~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~ 166 (422)
+.++.++++. |+++++|+||+|||++|++|+.+++++++.||+|+.+++.+||+|+|||||+||++++++++++..|++
T Consensus 3 ~~~~~l~~~~-g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~ 81 (333)
T 3bwt_A 3 FADAVLDQYI-GSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTK 81 (333)
T ss_dssp TTTCCGGGTT-TCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred cccCcHHHHH-HHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHH
Confidence 4556788887 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHH
Q 047627 167 QITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQA 246 (422)
Q Consensus 167 ~l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~ 246 (422)
.+. |+++.|+.|+|||||+|++++.++ ++++...+.+++.+++..|++|++||||||+|++..++ +.++.|++.
T Consensus 82 ~~~---~~~~~l~~~~~G~rviQ~~l~~~~-~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~--~~~~~i~~~ 155 (333)
T 3bwt_A 82 ISS---PHFVEISLNPHGTRALQKLIECIK-TDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKP--ENFQFIFDA 155 (333)
T ss_dssp HHG---GGHHHHHHSTTHHHHHHHHHHHCC-SHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCH--HHHHHHHHH
T ss_pred HHH---hHHHHHHhcccccHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCH--HHHHHHHHH
Confidence 999 999999999999999999999998 88888989999999999999999999999999999988 899999999
Q ss_pred HhhhHHHHhcCcCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChh----hHHHHHHHHHHH
Q 047627 247 ALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPY----LIETICFSLRGH 322 (422)
Q Consensus 247 l~~~~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~----~~~~ii~~l~~~ 322 (422)
+.+++.+++.|++||+|+|+|+++++++++..|++++.+++..|+.|+|||||||++|+.++++ .++.|++.++++
T Consensus 156 l~~~~~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~ 235 (333)
T 3bwt_A 156 ISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPR 235 (333)
T ss_dssp HHHSHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987654 368999999999
Q ss_pred HHHhhcCcchHHHHHHHhcchhhHHHHHHHHhcC--ChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHHhH
Q 047627 323 YIDLSLTKCGSFVVQNCLKYRITVNYIVEEFLLN--SDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQNL 400 (422)
Q Consensus 323 ~~~Ls~~k~GS~Vvek~l~~~~~r~~Ii~el~~~--~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~~~ 400 (422)
+.+|+++||||+|+|+||+.+..++.++.+++.. .+.+..|+.|+|||||||++|+.+++++. .++++|+++|.|++
T Consensus 236 ~~~Ls~~k~gs~Vvek~l~~~~~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~~~-~~~~~l~~~l~p~l 314 (333)
T 3bwt_A 236 AIELSIHKFGSNVIEKILKTAIVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQND-YLYKRLSEIVAPLL 314 (333)
T ss_dssp HHHHHTSTTHHHHHHHHHTSHHHHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGC
T ss_pred HHHHHcccHHHHHHHHHHcccchhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccCccH-HHHHHHHHHHHHhc
Confidence 9999999999999999999966678899999861 36899999999999999999999986421 57899999999998
Q ss_pred -HHHhc-hhhhHHHHHHH
Q 047627 401 -DSLRF-GYGKHVYNFIK 416 (422)
Q Consensus 401 -~~L~~-~~G~~V~~~l~ 416 (422)
.+|+. +||+||+++++
T Consensus 315 ~~~lr~~~~G~~i~~~l~ 332 (333)
T 3bwt_A 315 VGPIRNTPHGKRIIGMLH 332 (333)
T ss_dssp CGGGGGSHHHHHHHTTSC
T ss_pred hhhhcCCCCHHHHHHHhc
Confidence 89999 99999998864
No 4
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=1.7e-62 Score=488.10 Aligned_cols=317 Identities=19% Similarity=0.275 Sum_probs=297.3
Q ss_pred chhhhcchhHhhhcccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhh
Q 047627 91 PFQHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITS 170 (422)
Q Consensus 91 ~f~~l~~~~v~~l~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~ 170 (422)
.|.++. |+++++|+||+|||++|++|+.+++++++.||+|+.+++.+|++|+||||||||++++++++++..|++.+.
T Consensus 25 ~l~~i~-g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~- 102 (369)
T 3k49_A 25 SLKDIF-GHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFK- 102 (369)
T ss_dssp CGGGGT-TCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHT-
T ss_pred eHHHHH-HHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHh-
Confidence 467786 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhh
Q 047627 171 QDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEH 250 (422)
Q Consensus 171 ~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~ 250 (422)
|++..|+.|+|||+|+|++++.+. +++...+.+++.+++..|++|++||||||++++..+. +.++.|++.+.++
T Consensus 103 --g~~~~L~~~~~G~rVlQk~le~~~--~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~--~~~~~i~~~~~~~ 176 (369)
T 3k49_A 103 --GNMKQLSLQMYACRVIQKALEYID--SNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPI--EKLPFILSSLTGH 176 (369)
T ss_dssp --TCHHHHHHSTTHHHHHHHHHHHSC--HHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCG--GGCHHHHHHHTTT
T ss_pred --hhHHHHhcChhhHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCH--HHHHHHHHHHHHH
Confidence 999999999999999999999987 6666666777999999999999999999999999988 8999999999999
Q ss_pred HHHHhcCcCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhh------HHHHHHHHHHHHH
Q 047627 251 CLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYL------IETICFSLRGHYI 324 (422)
Q Consensus 251 ~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~------~~~ii~~l~~~~~ 324 (422)
+..++.|++||+|+|+||++++++++..+++++.+++..|+.|+|||||||++|+.+++.. ++.|++.+.+++.
T Consensus 177 ~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~ 256 (369)
T 3k49_A 177 IYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVV 256 (369)
T ss_dssp HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998764 6789999999999
Q ss_pred HhhcCcchHHHHHHHhcc--hhhHHHHHHHHhcC----------ChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHH
Q 047627 325 DLSLTKCGSFVVQNCLKY--RITVNYIVEEFLLN----------SDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRL 392 (422)
Q Consensus 325 ~Ls~~k~GS~Vvek~l~~--~~~r~~Ii~el~~~----------~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l 392 (422)
+|+++||||+|||+||+. ++.|+.|+++++.. .+.+..|+.|+|||||||++|+.+++ .+++.|
T Consensus 257 ~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~----~~~~~l 332 (369)
T 3k49_A 257 EYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEG----EGKKLI 332 (369)
T ss_dssp HHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCH----HHHHHH
T ss_pred HHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCH----HHHHHH
Confidence 999999999999999999 67899999999862 23588999999999999999999998 899999
Q ss_pred HHHHHHhHHHHhc--hhhhHHHHHHHhhh
Q 047627 393 VTKLQQNLDSLRF--GYGKHVYNFIKDCD 419 (422)
Q Consensus 393 ~~~l~~~~~~L~~--~~G~~V~~~l~~~~ 419 (422)
+++|+|++..|+. +||+++++.+++..
T Consensus 333 ~~~i~p~l~~L~~~~~~G~~~~~~~e~~~ 361 (369)
T 3k49_A 333 VIAIRAYLDKLNKSNSLGNRHLASVEKLA 361 (369)
T ss_dssp HHHHHHHHHHHHHCC--CCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcchHHHHHHHHH
Confidence 9999999999974 89999999998864
No 5
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=6.3e-62 Score=484.60 Aligned_cols=328 Identities=17% Similarity=0.236 Sum_probs=286.4
Q ss_pred CCCCCCCchhhhc-chhHhhhcccCcccHHHHHhhcCCCHHH-HHHHHHHHH---HHHHHhhccccchHHHHHHHhhCCH
Q 047627 84 PLGFQANPFQHCA-NSGILLLAQDEQGSQYLQEKLTSGDSRF-LDKVFNVVS---EFTFQIICNQYARFVFGKFIETCNE 158 (422)
Q Consensus 84 p~~~~~~~f~~l~-~~~v~~l~~d~~gsrvlQ~~L~~~~~e~-~~~I~~ei~---~~~~~L~~d~~gn~vvQkLi~~~~~ 158 (422)
|.+-....+..+. +|+++++|+||+|||+||+.|+.+++++ ++.||+++. +++.+||+|+|||||||||+++|++
T Consensus 5 ~~~~~~~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~ 84 (382)
T 3v71_A 5 PVAPIFISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATP 84 (382)
T ss_dssp ------CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCH
T ss_pred CCCcccCcHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCH
Confidence 3333334455553 6899999999999999999999998654 799999985 7899999999999999999999999
Q ss_pred HHHHHHHHH-HhhcCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHH-HHHHHhcCCCccHHHHHHHHHhccC
Q 047627 159 DQLLRITLQ-ITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKR-LFRLLMMTKPGSSVVLQCLEQIYHH 236 (422)
Q Consensus 159 ~q~~~i~~~-l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~-~~~~L~~d~~gshViQ~~l~~~~~~ 236 (422)
+++..++.. +. |+++.|+.|+|||||+|++++++. . ++...+.+++.+ ++..|++|++||||||+|++..+.
T Consensus 85 ~~~~~li~~~l~---g~v~~Ls~~~~G~rvvQk~ie~~~-~-~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~- 158 (382)
T 3v71_A 85 AEQRELLRQMID---GGLLAMCKDKFACRVVQLALQKFD-H-SNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPV- 158 (382)
T ss_dssp HHHHHHHHHHHH---TCHHHHHTSTTHHHHHHHHHHHSC-H-HHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCT-
T ss_pred HHHHHHHHHHhc---chHHHHHhCccchHHHHHHHHHCC-H-HHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCH-
Confidence 999999976 68 999999999999999999999998 4 455556666988 899999999999999999999988
Q ss_pred cchhhHHHHHHh--hhHHHHhcCcCCcHHHHHHHhccChhh-----------HHHHHHHHHHhHHhhhhcCChhHHHHHh
Q 047627 237 NNKNDFIYQAAL--EHCLYLACHEQGCINMNNFIDEMKGPR-----------RKQILYLISVNAASLSRNFSGNYVVQHV 303 (422)
Q Consensus 237 ~~~~~~i~~~l~--~~~~~la~~~~Gs~vlq~ll~~~~~~~-----------~~~L~~~l~~~~~~L~~d~~Gn~VvQ~l 303 (422)
+.+++|++.+. +++.++++|+|||+|+|++|+++++++ ...|++++.+++..|+.|+|||||||++
T Consensus 159 -~~~~~Ii~~~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~i 237 (382)
T 3v71_A 159 -DMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYV 237 (382)
T ss_dssp -TTSHHHHHHHHSTTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHH
T ss_pred -HHHHHHHHHHhcccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHH
Confidence 89999999997 689999999999999999999987643 2356778888899999999999999999
Q ss_pred hccCCh--hhHHHHHHH-HHHHHHHhhcCcchHHHHHHHhcc--hhhHHHHHHHHhc--------CChhHHHhhcChhhh
Q 047627 304 LELEDP--YLIETICFS-LRGHYIDLSLTKCGSFVVQNCLKY--RITVNYIVEEFLL--------NSDQIFRVACDKYGN 370 (422)
Q Consensus 304 L~~~~~--~~~~~ii~~-l~~~~~~Ls~~k~GS~Vvek~l~~--~~~r~~Ii~el~~--------~~~~l~~L~~d~~Gn 370 (422)
|+.+++ +.|..|+.. +.+++++||++||||+||||||+. +..|..|+++++. +.+.+..|+.|+|||
T Consensus 238 L~~~~~~e~~r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygN 317 (382)
T 3v71_A 238 IKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGN 317 (382)
T ss_dssp HTCCSTHHHHHHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCcc
Confidence 999874 568899974 999999999999999999999999 6789999999986 235899999999999
Q ss_pred HHHHHHHhhcCCCC--c-------------HHHHHHHHHHHHHhHHHHhc-hhhhHHHHHHHhh
Q 047627 371 YVIQTALIETMRPN--S-------------LHLHQRLVTKLQQNLDSLRF-GYGKHVYNFIKDC 418 (422)
Q Consensus 371 yVvq~~L~~~~~~~--~-------------~~~~~~l~~~l~~~~~~L~~-~~G~~V~~~l~~~ 418 (422)
||||++|+.+++.. . +.++++|++++++++.+|+. +|||||+++++|.
T Consensus 318 yVvQ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~~ 381 (382)
T 3v71_A 318 YVVQQMISICTAALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRH 381 (382)
T ss_dssp HHHHHHHHHHHHHCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcccccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHhc
Confidence 99999999997510 0 13568999999999999999 9999999999985
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=1.3e-42 Score=342.73 Aligned_cols=281 Identities=15% Similarity=0.167 Sum_probs=267.1
Q ss_pred chhhhcchhHhhhcccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhh
Q 047627 91 PFQHCANSGILLLAQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITS 170 (422)
Q Consensus 91 ~f~~l~~~~v~~l~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~ 170 (422)
.|..+. +++++|++|++|+.++|+++++++++++..|++++.+++.+|+.|+||++|+|++++.++.+++..+++++.
T Consensus 56 i~~ei~-~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~- 133 (351)
T 3gvo_A 56 VFNEIL-QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELD- 133 (351)
T ss_dssp HHHHHG-GGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGT-
T ss_pred HHHHHH-HhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhh-
Confidence 477776 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhh
Q 047627 171 QDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEH 250 (422)
Q Consensus 171 ~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~ 250 (422)
+++..|+.|++|++|+|+++++.. ++....+.+.+.+++..++.+.+|++|+|++++..+. +.+..|++.+.++
T Consensus 134 --~~~~~L~~d~~Gn~ViQk~l~~~~--~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~--~~~~~ii~~l~~~ 207 (351)
T 3gvo_A 134 --GHVLKCVKDQNGNHVVQKCIECVQ--PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTA--EQTLPILEELHQH 207 (351)
T ss_dssp --TCHHHHHHSTTHHHHHHHHHHHSC--GGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCH--HHHHHHHHHHHTT
T ss_pred --hhHHHHHHhhhhhHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCH--HHHHHHHHHHhhh
Confidence 999999999999999999999886 7888888898999999999999999999999999988 8899999999999
Q ss_pred HHHHhcCcCCcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHH-------HH
Q 047627 251 CLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRG-------HY 323 (422)
Q Consensus 251 ~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~-------~~ 323 (422)
+..++.|+||++|+|++|++++++.+..|++.+.+++..|+.++||++||+++|++++++.|+.|++.+.+ .+
T Consensus 208 ~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l 287 (351)
T 3gvo_A 208 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSAL 287 (351)
T ss_dssp HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHH
T ss_pred HHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 79
Q ss_pred HHhhcCcchHHHHHHHhcc--hhhHHHHHHHHhcCChhHHHhhcChhhhHHHHHHHhhcCC
Q 047627 324 IDLSLTKCGSFVVQNCLKY--RITVNYIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMR 382 (422)
Q Consensus 324 ~~Ls~~k~GS~Vvek~l~~--~~~r~~Ii~el~~~~~~l~~L~~d~~GnyVvq~~L~~~~~ 382 (422)
..|+.|+||++||+++|+. +..|..|++.+.. ++..|..++||++|+.++-+..-.
T Consensus 288 ~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~---~~~~L~~~~~g~~i~~kl~~~~~~ 345 (351)
T 3gvo_A 288 YTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP---HITTLRKYTYGKHILAKLEKYYLK 345 (351)
T ss_dssp HHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGG---GHHHHTTSTTTHHHHHHHHHHTC-
T ss_pred HHccCCcchHHHHHHHHHhCCHHHHHHHHHHHHH---HHHHHhcCCchHHHHHHHHHHHhh
Confidence 9999999999999999998 6789999999987 999999999999999998776644
No 7
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=7.5e-43 Score=346.80 Aligned_cols=298 Identities=15% Similarity=0.154 Sum_probs=274.5
Q ss_pred cccHHHHHhhcCCC--HHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhcccch
Q 047627 108 QGSQYLQEKLTSGD--SRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGS 185 (422)
Q Consensus 108 ~gsrvlQ~~L~~~~--~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~~Gs 185 (422)
+.|++++.+-.... +.++...++++.+++.++|+|++||+++|+++++++++++..|++++. +++++|+.|+||+
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~---~~~~~L~~d~~gn 79 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIR---DDAIELSNDVFGN 79 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHG---GGHHHHHHSTTTH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHH---HHHHHHhhCcccc
Confidence 46888888888764 478889999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhHHHHhcCcCCcHHHH
Q 047627 186 SSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMN 265 (422)
Q Consensus 186 ~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~~~la~~~~Gs~vlq 265 (422)
+|+||+++.++ +++...+.+.+.+++..++.|.+|++|+|++++.... +.+..+++++.+++..++.|++|++|+|
T Consensus 80 ~vvQkll~~~~--~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~--~q~~~ii~el~~~~~~L~~d~~Gn~ViQ 155 (369)
T 3k49_A 80 YVIQKFFEFGS--KIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDS--NQRIELVLELSDSVLQMIKDQNGNHVIQ 155 (369)
T ss_dssp HHHHHHHHHCC--HHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCH--HHHHHHHGGGTTCHHHHHHSTTHHHHHH
T ss_pred cHHHHHHHhCC--HHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHhcCcccchHHH
Confidence 99999999987 8888899999999999999999999999999999988 8889999999999999999999999999
Q ss_pred HHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcc--h
Q 047627 266 NFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY--R 343 (422)
Q Consensus 266 ~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~--~ 343 (422)
++|+.++++.+..|++.+.+++..|+.++||++|+|++|+.++++.++.|++.+.+++..|+.|.||++|+|++|+. +
T Consensus 156 ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~ 235 (369)
T 3k49_A 156 KAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQF 235 (369)
T ss_dssp HHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 3
Q ss_pred h------hHHHHHHHHhcCChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHH-------------hHHHHh
Q 047627 344 I------TVNYIVEEFLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQ-------------NLDSLR 404 (422)
Q Consensus 344 ~------~r~~Ii~el~~~~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~-------------~~~~L~ 404 (422)
. .+..|++.+.. ++..|+.|+||++||+++|+.++. ++++.|+++|.+ .+..|.
T Consensus 236 ~~~~~~~~~~~i~~~l~~---~~~~Ls~~k~gS~Vvek~l~~~~~----~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~ 308 (369)
T 3k49_A 236 TNKEMVDIKQEIIETVAN---NVVEYSKHKFASNVVEKSILYGSK----NQKDLIISKILPRDKNHALNLEDDSPMILMI 308 (369)
T ss_dssp SCHHHHHHHHHHHHHHHT---THHHHHTSTTHHHHHHHHHHHSCH----HHHHHHHTTTSCSSHHHHHTCCTTSHHHHHH
T ss_pred hhhhhHhHHHHHHHHHHH---HHHHHHhhhHhhHHHHHHHHhCCH----HHHHHHHHHHhccccccccccccccHHHHHH
Confidence 2 36788898888 999999999999999999999988 899999999854 366788
Q ss_pred c-hhhhHHHHHHHhhh
Q 047627 405 F-GYGKHVYNFIKDCD 419 (422)
Q Consensus 405 ~-~~G~~V~~~l~~~~ 419 (422)
. +||.+|++++....
T Consensus 309 ~D~~gNyViq~~l~~~ 324 (369)
T 3k49_A 309 KDQFANYVIQKLVNVS 324 (369)
T ss_dssp TSTTHHHHHHHHHHHC
T ss_pred hCcchHHHHHHHHHhC
Confidence 8 99999999987654
No 8
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=6.3e-41 Score=328.56 Aligned_cols=277 Identities=17% Similarity=0.211 Sum_probs=254.6
Q ss_pred HHHHHHHHHHHHhhccccchHHHHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHH
Q 047627 127 KVFNVVSEFTFQIICNQYARFVFGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVM 206 (422)
Q Consensus 127 ~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~ 206 (422)
.+++++.+++.+++.|++||+++|+++++++++++..|++++. +++++|+.|+||++|+||+++.++ +++...+.
T Consensus 6 ~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~---~~~~~L~~d~~gn~vvQkll~~~~--~~~~~~i~ 80 (333)
T 3bwt_A 6 AVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETK---DYTVELMTDSFGNYLIQKLLEEVT--TEQRIVLT 80 (333)
T ss_dssp CCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHG---GGHHHHHTSTTHHHHHHHHHHHSC--HHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHH---HHHHHHhcCcccHHHHHHHHhhCC--HHHHHHHH
Confidence 4577889999999999999999999999999999999999999 999999999999999999999997 77888888
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhHHHHhcCcCCcHHHHHHHhccChhhHHHHHHHHHHh
Q 047627 207 KALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYLISVN 286 (422)
Q Consensus 207 ~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~~~ 286 (422)
+.+.+++..++.|.+|++|+|++++..+. ++.+..+++.+.+++..++.|++|++|+|++|+..+++.+..+++.+.++
T Consensus 81 ~~~~~~~~~l~~~~~G~rviQ~~l~~~~~-~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~ 159 (333)
T 3bwt_A 81 KISSPHFVEISLNPHGTRALQKLIECIKT-DEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDS 159 (333)
T ss_dssp HHHGGGHHHHHHSTTHHHHHHHHHHHCCS-HHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHhcccccHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999864 14567789999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcc--hh----hHHHHHHHHhcCChhH
Q 047627 287 AASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY--RI----TVNYIVEEFLLNSDQI 360 (422)
Q Consensus 287 ~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~--~~----~r~~Ii~el~~~~~~l 360 (422)
+..|+.++||++|+|++++.++++.++.|++.+.+++..|+.|.||++|||++|+. +. .+..|++.+.. ++
T Consensus 160 ~~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~---~~ 236 (333)
T 3bwt_A 160 CIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKP---RA 236 (333)
T ss_dssp HHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGG---GH
T ss_pred HHHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHH---HH
Confidence 99999999999999999999999999999999999999999999999999999998 22 25788888877 99
Q ss_pred HHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHH-----HhHHHHhc-hhhhHHHHHHHhh
Q 047627 361 FRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQ-----QNLDSLRF-GYGKHVYNFIKDC 418 (422)
Q Consensus 361 ~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~-----~~~~~L~~-~~G~~V~~~l~~~ 418 (422)
..|+.++||++||+++|+... .++.++.++. +++..|.. +||.+|++++...
T Consensus 237 ~~Ls~~k~gs~Vvek~l~~~~------~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~ 294 (333)
T 3bwt_A 237 IELSIHKFGSNVIEKILKTAI------VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDI 294 (333)
T ss_dssp HHHHTSTTHHHHHHHHHTSHH------HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHcccc------hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHh
Confidence 999999999999999998653 3566776665 57889999 9999999998754
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=2.7e-40 Score=328.85 Aligned_cols=281 Identities=15% Similarity=0.166 Sum_probs=247.2
Q ss_pred HHHH--HHHHHHhhccccchHHHHHHHhhCCHH-HHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhcCChhHHHHH
Q 047627 129 FNVV--SEFTFQIICNQYARFVFGKFIETCNED-QLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLV 205 (422)
Q Consensus 129 ~~ei--~~~~~~L~~d~~gn~vvQkLi~~~~~~-q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i 205 (422)
+.++ .+++.++|.|++||+++|+.++.++++ .+..|++.+.+..+++++|+.|+||++||||+++.++ .+++..++
T Consensus 13 L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~-~~~~~~li 91 (382)
T 3v71_A 13 LEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELAT-PAEQRELL 91 (382)
T ss_dssp HHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCC-HHHHHHHH
T ss_pred HHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCC-HHHHHHHH
Confidence 4556 588999999999999999999998765 4778888886444689999999999999999999998 44555555
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhh-hHHHHhcCcCCcHHHHHHHhccChhhHHHHHHHHH
Q 047627 206 MKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALE-HCLYLACHEQGCINMNNFIDEMKGPRRKQILYLIS 284 (422)
Q Consensus 206 ~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~-~~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~l~ 284 (422)
.+.+.+++..++.|.+|++|+|++++.+.. +....+++++.+ ++..++.|++|++|+|+||+..+++.+..|++.+.
T Consensus 92 ~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~--~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~ 169 (382)
T 3v71_A 92 RQMIDGGLLAMCKDKFACRVVQLALQKFDH--SNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLS 169 (382)
T ss_dssp HHHHHTCHHHHHTSTTHHHHHHHHHHHSCH--HHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHH
T ss_pred HHHhcchHHHHHhCccchHHHHHHHHHCCH--HHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHh
Confidence 565789999999999999999999999987 888889999998 89999999999999999999999999999999997
Q ss_pred --HhHHhhhhcCChhHHHHHhhccCChhh-------H----HHHHHHHHHHHHHhhcCcchHHHHHHHhcc-h---hhHH
Q 047627 285 --VNAASLSRNFSGNYVVQHVLELEDPYL-------I----ETICFSLRGHYIDLSLTKCGSFVVQNCLKY-R---ITVN 347 (422)
Q Consensus 285 --~~~~~L~~d~~Gn~VvQ~lL~~~~~~~-------~----~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~-~---~~r~ 347 (422)
+++..|+.|+||++|||++|++.++.. | ..|++.+.+++..|+.|+||++|||++|+. . ..|.
T Consensus 170 ~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~ 249 (382)
T 3v71_A 170 SGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRD 249 (382)
T ss_dssp STTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHH
T ss_pred cccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHH
Confidence 689999999999999999999876432 2 356777888899999999999999999998 2 3588
Q ss_pred HHHHH-HhcCChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHH-----------hHHHHhc-hhhhHHHHH
Q 047627 348 YIVEE-FLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQ-----------NLDSLRF-GYGKHVYNF 414 (422)
Q Consensus 348 ~Ii~e-l~~~~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~-----------~~~~L~~-~~G~~V~~~ 414 (422)
.|+.+ +.. ++..|+.|+||++||+++|+.+++ ++++.|+++|.. .+..|.. +||.+|+++
T Consensus 250 ~ii~~~l~~---~~~~Ls~~k~gS~Vvek~l~~~~~----~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~ 322 (382)
T 3v71_A 250 TIIDKCLLR---NLLSMSQDKYASHVIEGAFLFAPP----ALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQ 322 (382)
T ss_dssp HHHHHTTTT---CHHHHTTSTTHHHHHHHHHHHCCH----HHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHH
T ss_pred HHHHHHHHH---HHHHHhcCchHhHHHHHHHHhCCH----HHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHH
Confidence 89987 555 999999999999999999999988 899999999974 6888999 999999999
Q ss_pred HHhhh
Q 047627 415 IKDCD 419 (422)
Q Consensus 415 l~~~~ 419 (422)
+....
T Consensus 323 ~L~~~ 327 (382)
T 3v71_A 323 MISIC 327 (382)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 87643
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=5.5e-38 Score=314.36 Aligned_cols=276 Identities=13% Similarity=0.188 Sum_probs=246.9
Q ss_pred HHHHHHhhccccchHHHHHHHhhC-CHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhcCCh-------hHHHH
Q 047627 133 SEFTFQIICNQYARFVFGKFIETC-NEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRP-------PLLDL 204 (422)
Q Consensus 133 ~~~~~~L~~d~~gn~vvQkLi~~~-~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~-------~~~~~ 204 (422)
.+++.++++|++|++++|+.++.+ +++++..|++++..+.+++++|+.|+||++||||+++.++ + ++...
T Consensus 28 ~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~--~~~~~~~~~q~~~ 105 (412)
T 3k62_A 28 SGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISL--ATNDDGYTKRQEK 105 (412)
T ss_dssp HTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHH--HCCSTTHHHHHHH
T ss_pred CCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCC--cccccccHHHHHH
Confidence 589999999999999999999997 8999999999998221248999999999999999999998 5 67777
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHH--hhhHHHHhcCcCCcHHHHHHHhccChhhHHHHHHH
Q 047627 205 VMKALKRLFRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAA--LEHCLYLACHEQGCINMNNFIDEMKGPRRKQILYL 282 (422)
Q Consensus 205 i~~~l~~~~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l--~~~~~~la~~~~Gs~vlq~ll~~~~~~~~~~L~~~ 282 (422)
+.+.+.+++..++.|.+|++|+|++++..+. +.+..|++++ .+++..++.|++|++|+|+||+.++++.+..|++.
T Consensus 106 i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~--~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~ 183 (412)
T 3k62_A 106 LKNFISSQMTDMCLDKFACRVIQSSLQNMDL--SLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDF 183 (412)
T ss_dssp HHHHHHHTHHHHHHSTTHHHHHHHHHHHSCH--HHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhhHHHHHHHHhCCH--HHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHH
Confidence 8888999999999999999999999999987 8889999999 68999999999999999999999999999999999
Q ss_pred HH--HhHHhhhhcCChhHHHHHhhccCCh------------hhHH----HHHHHHHHHHHHhhcCcchHHHHHHHhcc--
Q 047627 283 IS--VNAASLSRNFSGNYVVQHVLELEDP------------YLIE----TICFSLRGHYIDLSLTKCGSFVVQNCLKY-- 342 (422)
Q Consensus 283 l~--~~~~~L~~d~~Gn~VvQ~lL~~~~~------------~~~~----~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~-- 342 (422)
+. +++..|+.|+||+.|||++|+..++ +.|. .+++.+..++..|+.|+||++|||.+|+.
T Consensus 184 ~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~ 263 (412)
T 3k62_A 184 VATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDD 263 (412)
T ss_dssp HHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGG
T ss_pred HhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCC
Confidence 98 5999999999999999999998763 2343 45677788899999999999999999999
Q ss_pred hh-hHHHHHHH-HhcCChhHHHhhcChhhhHHHHHHHhhcCCCCcHHHHHHHHHHHHH-----------hHHHHhc-hhh
Q 047627 343 RI-TVNYIVEE-FLLNSDQIFRVACDKYGNYVIQTALIETMRPNSLHLHQRLVTKLQQ-----------NLDSLRF-GYG 408 (422)
Q Consensus 343 ~~-~r~~Ii~e-l~~~~~~l~~L~~d~~GnyVvq~~L~~~~~~~~~~~~~~l~~~l~~-----------~~~~L~~-~~G 408 (422)
+. .|..|++. +.. ++..|++++||+.||+++|+.+++ ++++.|+++|.. .+..|.. +||
T Consensus 264 ~~~~r~~ii~~~l~~---~~~~LS~~KfgSnVVek~L~~~~~----~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyG 336 (412)
T 3k62_A 264 LAVYRECIIEKCLMR---NLLSLSQEKFASHVVEKAFLHAPL----ELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFG 336 (412)
T ss_dssp GHHHHHHHHHHHTTT---CHHHHHTSTTHHHHHHHHHHHCCH----HHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTH
T ss_pred chhHHHHHHHHHHHH---HHHHHhcccHhHHHHHHHHHhCCH----HHHHHHHHHHHhhccCCccccchHHHHHhcCCch
Confidence 33 37788875 555 999999999999999999999988 899999999975 3788888 999
Q ss_pred hHHHHHHHhhh
Q 047627 409 KHVYNFIKDCD 419 (422)
Q Consensus 409 ~~V~~~l~~~~ 419 (422)
..|++++....
T Consensus 337 NYViQ~~L~~~ 347 (412)
T 3k62_A 337 NYVVQCMLTIC 347 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999987654
No 11
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=56.75 E-value=1.3e+02 Score=28.22 Aligned_cols=235 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhhC-CHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhh
Q 047627 117 LTSGDSRFLDKVFNVVSEFTFQIICNQYARFVFGKFIETC-NEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAV 195 (422)
Q Consensus 117 L~~~~~e~~~~I~~ei~~~~~~L~~d~~gn~vvQkLi~~~-~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~ 195 (422)
|..-++++.+.|++|+...+..-..-..|+-.++++++.. +++.-..|++.+....+.-.==....--...+-.++..-
T Consensus 49 l~~v~~~~~~~Vl~EF~~~~~~~~~i~~gg~~~~~~L~~aLg~~~A~~ll~~i~~~~~~~~~~~L~~~dp~~la~~i~~E 128 (329)
T 3hjl_A 49 LESVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENIKKVIPPTLAEKFRGILELGDAEKILKEIEKVDSRILASLLKNE 128 (329)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCHHHHHHHHHHHhccccCCHHHHHHCCCHHHHHHHHHhC
Q ss_pred cCChhHHHHHHHHHHHH----HHHHhcCCCccHHHHHHHHHhccCcchhhHHHHHHhhhHHHH----hcCcCCcHHHHHH
Q 047627 196 ANRPPLLDLVMKALKRL----FRLLMMTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYL----ACHEQGCINMNNF 267 (422)
Q Consensus 196 ~~~~~~~~~i~~~l~~~----~~~L~~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~~~l----a~~~~Gs~vlq~l 267 (422)
. |+....|...+.+. +...+-+....-|+.++...-...++..+.|-+.+...+... ....-|...+-.+
T Consensus 129 h--PQtiAlILs~L~p~~AA~vL~~Lp~~~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~I 206 (329)
T 3hjl_A 129 H--PQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAEL 206 (329)
T ss_dssp C--HHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred C--HHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHH
Q ss_pred HhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhcc--hhh
Q 047627 268 IDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLKY--RIT 345 (422)
Q Consensus 268 l~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~~--~~~ 345 (422)
|+.......+.+++.+...=..++..--....+=-=|-.-++...+.+++.+-....-++..--..-+-+++|.. .-.
T Consensus 207 LN~~d~~~e~~il~~L~~~dpela~~Ir~~MF~Fedl~~lddr~iq~llrev~~~~L~~ALKga~~elrekil~nmS~Ra 286 (329)
T 3hjl_A 207 LNTLDKETRELILQSIGQEDPLLEERIREKMFTFEDIRKLSDRDIIEILKVVDKNTLMIALLGAPEDIKQKFLSNMSKRA 286 (329)
T ss_dssp HHHSCHHHHHHHHHHHHHHCHHHHHHHHHHHSCGGGGGGSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHH
T ss_pred HhcCChHHHHHHHHHHHHhCHHHHHHHHHHhcCHHHHhCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhcCHHH
Q ss_pred HHHHHHHH
Q 047627 346 VNYIVEEF 353 (422)
Q Consensus 346 r~~Ii~el 353 (422)
...+-+++
T Consensus 287 a~~l~eel 294 (329)
T 3hjl_A 287 AKLFLEDM 294 (329)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 12
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=50.21 E-value=50 Score=29.98 Aligned_cols=50 Identities=12% Similarity=0.200 Sum_probs=25.4
Q ss_pred cchHHHHHHHhh-------CCHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhc
Q 047627 144 YARFVFGKFIET-------CNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVA 196 (422)
Q Consensus 144 ~gn~vvQkLi~~-------~~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~ 196 (422)
.+.|++||++.. |...+|..-+..+. ++++.-.......+.++.++.|.-
T Consensus 164 vAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL---~~mV~~l~~~ps~RLLKhiircYl 220 (268)
T 2fv2_A 164 VATFILQKILLDDTGLAYICQTYERFSHVAMIL---GKMVLQLSKEPSARLLKHVVRCYL 220 (268)
T ss_dssp HHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHH---HHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHccHHHHHHHHHHH---HHHHHHHhcCCChHHHHHHHHHHH
Confidence 467778887754 33333333333333 344333333445566666666654
No 13
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=48.57 E-value=1.6e+02 Score=26.73 Aligned_cols=186 Identities=8% Similarity=0.063 Sum_probs=0.0
Q ss_pred HhhcCCCHHHHHHHHHHHH------HHHHHhhccccchHHHHHHHhhCC---HHHHHHHHHH-HhhcCchHHHhhhcccc
Q 047627 115 EKLTSGDSRFLDKVFNVVS------EFTFQIICNQYARFVFGKFIETCN---EDQLLRITLQ-ITSQDQLFVQASVDKFG 184 (422)
Q Consensus 115 ~~L~~~~~e~~~~I~~ei~------~~~~~L~~d~~gn~vvQkLi~~~~---~~q~~~i~~~-l~~~~~~i~~La~~~~G 184 (422)
+.|-.+++.+.+.+.+++. +.+..++ +.++...+ -..-..+++. +. +++..+ ..-+
T Consensus 42 ~~L~~~sp~q~e~lc~~L~l~~lsd~~l~~lc---------~~ll~ls~dlS~~~a~v~~~~l~L---Pkil~L--~~~A 107 (264)
T 2ilr_A 42 QLLHECSPSQMDLLCAQLQLPQLSDLGLLRLC---------TWLLALSPDLSLSNATVLTRSLFL---GRILSL--TSSA 107 (264)
T ss_dssp HGGGGCCHHHHHHHHHHHTGGGCCHHHHHHHH---------HHHHHCSSCCCHHHHHHHHHHHHH---HHHHHC--SSCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccCCHHHHHHHH---------HHHHcCCcchhhhhHHHHHHHHHH---HHHHhc--cCcc
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHHHH--HHhccCcchhhHHHHHHhhhHHHHhcCcCCcH
Q 047627 185 SSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQCL--EQIYHHNNKNDFIYQAALEHCLYLACHEQGCI 262 (422)
Q Consensus 185 s~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~~l--~~~~~~~~~~~~i~~~l~~~~~~la~~~~Gs~ 262 (422)
+|++..++..+. .......+.-.+.|-+..--......-++.+++ +++++ +....+...+ .++.-+..-..
T Consensus 108 SR~L~sal~~f~-k~~p~a~~~all~PLL~~~~~g~~Q~eLi~rlik~e~l~p--~~~~lll~~i----L~l~WtE~~~~ 180 (264)
T 2ilr_A 108 SRLLTTALTSFA-AKYTYPVCSALLDPVLQAPGTGPAQTELLCCLVKMESLEP--DAQVLMLGQI----LELPWKEETFL 180 (264)
T ss_dssp CHHHHHHHHHHH-HHSHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTSCH--HHHHHHHHHH----HHSCCCHHHHH
T ss_pred hhHHHHHHHHHH-HhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCH--HHHHHHHHHH----HhccchHHHHH
Q ss_pred HHHHHHhcc---ChhhHHHHHHHHHHhHHhhhhc-------------------CChhHHHHHhhccCChhhHHHHHHHHH
Q 047627 263 NMNNFIDEM---KGPRRKQILYLISVNAASLSRN-------------------FSGNYVVQHVLELEDPYLIETICFSLR 320 (422)
Q Consensus 263 vlq~ll~~~---~~~~~~~L~~~l~~~~~~L~~d-------------------~~Gn~VvQ~lL~~~~~~~~~~ii~~l~ 320 (422)
|+|.+++.. +.+....++..+.+....++++ ++....+..+++....-.++.+...++
T Consensus 181 Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~skSlkFakLll~~itky~~~i~~~~~~~L~~~l~~n~TFLkKsi~a~L~ 260 (264)
T 2ilr_A 181 VLQSLLERQVEMTPEKFSVLMEKLCKKGLAATTSMAYAKLMLTVMTKYQANITETQRLGLAMALEPNTTFLRKSLKAALK 260 (264)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHC-----CCSHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHCSSSSSSHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhcccHHHHHHHHHHHHhHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q ss_pred H
Q 047627 321 G 321 (422)
Q Consensus 321 ~ 321 (422)
.
T Consensus 261 ~ 261 (264)
T 2ilr_A 261 H 261 (264)
T ss_dssp H
T ss_pred h
No 14
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=28.26 E-value=4.5e+02 Score=26.06 Aligned_cols=184 Identities=7% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhcCchHHHhhhcccchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCCCccHHHHH
Q 047627 149 FGKFIETCNEDQLLRITLQITSQDQLFVQASVDKFGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLMMTKPGSSVVLQ 228 (422)
Q Consensus 149 vQkLi~~~~~~q~~~i~~~l~~~~~~i~~La~~~~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~~d~~gshViQ~ 228 (422)
+-.+++.|.++....=...++ .++.+|.+.+-++|.--+...+. .+....+.- +...+..+++---..-+---
T Consensus 67 i~a~lDLcEDed~~IR~qaik----~Lp~~ck~~~i~kiaDvL~QlLq--tdd~~E~~~-V~~sL~sllk~Dpk~tl~~l 139 (507)
T 3u0r_A 67 INAQLDLCEDEDVSIRRQAIK----ELPQFATGENLPRVADILTQLLQ--TDDSAEFNL-VNNALLSIFKMDAKGTLGGL 139 (507)
T ss_dssp HHHHHHHHTCSSHHHHHHHHH----HGGGGCCTTCHHHHHHHHHHHTT--CCCHHHHHH-HHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHH----hhHHHhhhhhhhhHHHHHHHHHh--ccchHHHHH-HHHHHHHHHhcChHHHHHHH
Q ss_pred HHHHhccCcchhhHHHHHHhhhHHHHhcCcCCcHH-------HHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHH
Q 047627 229 CLEQIYHHNNKNDFIYQAALEHCLYLACHEQGCIN-------MNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQ 301 (422)
Q Consensus 229 ~l~~~~~~~~~~~~i~~~l~~~~~~la~~~~Gs~v-------lq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ 301 (422)
+-......+..++.++..+..++..+-.+.++--+ +.++++-.+.++...+++-+ ....+..+.-|.--+-
T Consensus 140 f~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL--~~lkl~~t~~g~qeLv 217 (507)
T 3u0r_A 140 FSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKIL--SGLKSLQTVSGRQQLV 217 (507)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH--HTSGGGSSHHHHHHHH
T ss_pred HHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHH--HhcccccCchHHHHHH
Q ss_pred Hhhcc----------CChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhc
Q 047627 302 HVLEL----------EDPYLIETICFSLRGHYIDLSLTKCGSFVVQNCLK 341 (422)
Q Consensus 302 ~lL~~----------~~~~~~~~ii~~l~~~~~~Ls~~k~GS~Vvek~l~ 341 (422)
.++.- .+++..++++.++...+.-++....++..+.-+.+
T Consensus 218 ~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 218 ELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp HHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
No 15
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=23.57 E-value=2.9e+02 Score=25.11 Aligned_cols=209 Identities=13% Similarity=0.063 Sum_probs=0.0
Q ss_pred ccHHHHHhhcCC-CHHHHHHHHHHHHHHHHHh----hccccchHHHHHHHhhCCHHHHHHHHHHHhhc-CchHHHhhhcc
Q 047627 109 GSQYLQEKLTSG-DSRFLDKVFNVVSEFTFQI----ICNQYARFVFGKFIETCNEDQLLRITLQITSQ-DQLFVQASVDK 182 (422)
Q Consensus 109 gsrvlQ~~L~~~-~~e~~~~I~~ei~~~~~~L----~~d~~gn~vvQkLi~~~~~~q~~~i~~~l~~~-~~~i~~La~~~ 182 (422)
|--+++.+|..+ +++.-..|++++.+....- .....--..+-.+|+.-.++....|+..+..+ ...++...-..
T Consensus 21 g~~~a~~~L~kaLg~~~A~~ll~~i~~~~~~~~~~~~L~~~dp~~La~~l~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~ 100 (279)
T 3pkr_A 21 SLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDE 100 (279)
T ss_dssp --------------------------------CCCGGGGGSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhcccccCchHHHHhCCCHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHCCHH
Q ss_pred cchHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHhccCcchhhHHHHHHhhhHHHHhcCcC
Q 047627 183 FGSSSIRKLMKAVANRPPLLDLVMKALKRLFRLLM---MTKPGSSVVLQCLEQIYHHNNKNDFIYQAALEHCLYLACHEQ 259 (422)
Q Consensus 183 ~Gs~VvQkll~~~~~~~~~~~~i~~~l~~~~~~L~---~d~~gshViQ~~l~~~~~~~~~~~~i~~~l~~~~~~la~~~~ 259 (422)
.-..|+..+-..-.-+++....+.+.|...+.... ....|...+-.+|+.+.. ...+.|++.+...=.+++..--
T Consensus 101 ~r~dV~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d~--~~e~~iL~~L~~~dpelAe~Ir 178 (279)
T 3pkr_A 101 MKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQ--KSAKTTLARIESVDNKLAGAIK 178 (279)
T ss_dssp HHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSCH--HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCCh--HHHHHHHHHHHhhCHHHHHHHH
Q ss_pred CcHHHHHHHhccChhhHHHHHHHHHHhHHhhhhcCChhHHHHHhhccCChhhHHHHHHHH
Q 047627 260 GCINMNNFIDEMKGPRRKQILYLISVNAASLSRNFSGNYVVQHVLELEDPYLIETICFSL 319 (422)
Q Consensus 260 Gs~vlq~ll~~~~~~~~~~L~~~l~~~~~~L~~d~~Gn~VvQ~lL~~~~~~~~~~ii~~l 319 (422)
.-.++=.-|-..++.....++.++-...+.++--.-.--+-++++..-+....+.+-+.+
T Consensus 179 ~~MF~FeDl~~lddr~iq~llreV~~~~L~~ALKGa~~elrekil~nmS~Raa~~l~eel 238 (279)
T 3pkr_A 179 EMMFTFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEM 238 (279)
T ss_dssp TTSCCGGGGGGSCHHHHHHHHHHSCHHHHHHHTTTSCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhccCHHHHhcCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHHHH
No 16
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=22.95 E-value=27 Score=26.25 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=22.1
Q ss_pred HHHHHHHHHHH-----HHHHHhhccccchHHH
Q 047627 123 RFLDKVFNVVS-----EFTFQIICNQYARFVF 149 (422)
Q Consensus 123 e~~~~I~~ei~-----~~~~~L~~d~~gn~vv 149 (422)
+.|..|.+.|. ..+.+.+.++||.||+
T Consensus 44 dlR~~Vre~l~~G~Sd~eI~~~mv~RYGdfVl 75 (90)
T 2kw0_A 44 DLRQKVYELMQEGKSKKEIVDYMVARYGNFVT 75 (90)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHTTTCB
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCeEE
Confidence 56788888887 4799999999999875
No 17
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=22.42 E-value=27 Score=25.90 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=22.2
Q ss_pred HHHHHHHHHHH-----HHHHHhhccccchHHH
Q 047627 123 RFLDKVFNVVS-----EFTFQIICNQYARFVF 149 (422)
Q Consensus 123 e~~~~I~~ei~-----~~~~~L~~d~~gn~vv 149 (422)
+.|..|.+.+. ..+.+.+.++||.||+
T Consensus 47 dlR~~V~~~l~~G~sd~eI~~~~v~RYG~fVl 78 (84)
T 2hl7_A 47 DLRKQIYGQLQQGKSDGEIVDYMVARYGDFVR 78 (84)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCeee
Confidence 56788888887 4899999999999874
No 18
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.86 E-value=2.7e+02 Score=23.20 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=37.4
Q ss_pred cccCcccHHHHHhhcCCCHHHHHHHHHHHHHHHHH-hhccccchHHHHHHHhhCCHHHHHHHHH
Q 047627 104 AQDEQGSQYLQEKLTSGDSRFLDKVFNVVSEFTFQ-IICNQYARFVFGKFIETCNEDQLLRITL 166 (422)
Q Consensus 104 ~~d~~gsrvlQ~~L~~~~~e~~~~I~~ei~~~~~~-L~~d~~gn~vvQkLi~~~~~~q~~~i~~ 166 (422)
..|.+|.-.|..+...++.+....+++.+...-.. -..|..|.-.+...+..+..+..+.+++
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 45777777888888888877777776654432111 2345667666666666666655444443
No 19
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=20.49 E-value=3.9e+02 Score=23.14 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=49.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHH----HHHHHhhccccchHHHHHHHhh--CCHHHHHHHHHHHhhcCchHHHhhh-cccch
Q 047627 113 LQEKLTSGDSRFLDKVFNVVS----EFTFQIICNQYARFVFGKFIET--CNEDQLLRITLQITSQDQLFVQASV-DKFGS 185 (422)
Q Consensus 113 lQ~~L~~~~~e~~~~I~~ei~----~~~~~L~~d~~gn~vvQkLi~~--~~~~q~~~i~~~l~~~~~~i~~La~-~~~Gs 185 (422)
|-.+|+..+|.....|+..+- ..+....-...-.-|+.++-.. .+++-...+-+.+.+.......... ..-|.
T Consensus 8 la~~l~~EhPQ~iA~iLs~L~~~~AA~VL~~Lp~~~~~ev~~Ria~l~~v~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~ 87 (216)
T 4fhr_B 8 LVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSKVGGI 87 (216)
T ss_dssp HHHHHTTSCHHHHHHHHHTSCHHHHHHHHHTSCGGGHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTCC-------CSH
T ss_pred HHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccccccccCCcH
Confidence 445666667777777765554 3455555556666677766554 3566666665555521111112111 22355
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHH
Q 047627 186 SSIRKLMKAVANRPPLLDLVMKALK 210 (422)
Q Consensus 186 ~VvQkll~~~~~~~~~~~~i~~~l~ 210 (422)
..+-.++.... ......+.+.|.
T Consensus 88 ~~~A~IlN~~~--~~~e~~il~~L~ 110 (216)
T 4fhr_B 88 DTAAEIMNNLD--RTTEKKIMDKLV 110 (216)
T ss_dssp HHHHHHHHHSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--hhHHHHHHHHHH
Confidence 66667777776 333333443343
Done!