BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047628
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SK66|NDUA9_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=2
SV=2
Length = 402
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/322 (76%), Positives = 284/322 (88%)
Query: 6 SGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPR 65
SGI+ATVFG TGFLGRY+VQQLAKMGSQVLVPFRG ED PRHLKLMGDLGQ+VPMKF+PR
Sbjct: 67 SGIVATVFGATGFLGRYLVQQLAKMGSQVLVPFRGSEDSPRHLKLMGDLGQVVPMKFDPR 126
Query: 66 DDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCL 125
D+++IKA MAKANVVINLIGREYETRN+SFED NH +AE++A +AKEHGGIMR+IQ+SCL
Sbjct: 127 DEDSIKAVMAKANVVINLIGREYETRNFSFEDANHHIAEKLALVAKEHGGIMRYIQVSCL 186
Query: 126 GASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRLLNKWAQFVKKFNFFPLF 185
GAS SSPSR+ KAAAEEAVL LP ATIMRPA MIGTEDR+LN W+ FVKK+ F PL
Sbjct: 187 GASVSSPSRMLRAKAAAEEAVLNALPEATIMRPATMIGTEDRILNPWSMFVKKYGFLPLI 246
Query: 186 GDGSTRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMYDTIREYPH 245
G G+T+ QPVYVVDVAAA+ AALKDDG+SMGK YELGGPD+FT HELAE+MYD IRE+P
Sbjct: 247 GGGTTKFQPVYVVDVAAAIVAALKDDGSSMGKTYELGGPDVFTTHELAEIMYDMIREWPR 306
Query: 246 YVKVPFPVAKAVAMPREILLKKVPFPLPRPGLFNLDEINAYTSDTIVSDNALTFQDLGIV 305
YVK+PFP+AKA+A PR+ ++ KVPFPLP P +FNLD+INA T+DT+VSDNAL FQDL +V
Sbjct: 307 YVKLPFPIAKAMAAPRDFMVNKVPFPLPSPQIFNLDQINALTTDTLVSDNALKFQDLDLV 366
Query: 306 PHKLKGYPTEYLIWYRKGGPKF 327
PHKLKGYP E+LI YRKGGP F
Sbjct: 367 PHKLKGYPVEFLIQYRKGGPNF 388
>sp|Q559Z0|NDUA9_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Dictyostelium discoideum GN=ndufa9 PE=3
SV=1
Length = 356
Score = 215 bits (547), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 193/320 (60%), Gaps = 15/320 (4%)
Query: 6 SGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDP-RHLKLMGDLGQIVPMKFNP 64
+G++ATVFG TGF GRY+VQ LA+ G QV+VP+R CED+ R LK++G+LGQI+P++F+
Sbjct: 38 TGLVATVFGATGFTGRYLVQLLARTGIQVVVPYR-CEDEGFRDLKVLGELGQIIPVRFDI 96
Query: 65 RDDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISC 124
RD +I+ ++ +N+VIN+ GR+YETRN+S +D+N A RIA ++K + ++I +S
Sbjct: 97 RDSESIERAISHSNIVINMAGRDYETRNFSLDDINVHAASRIADLSK---NVEKYIHVST 153
Query: 125 LGASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRLLNKWAQFVKKFNFFPL 184
L AS SPS +KA E+ +P T++RP+ + G ED+ +NKW++ + + F P
Sbjct: 154 LRASEDSPSHFSRSKAIGEKLTREIIPNCTVVRPSIIFGDEDKFINKWSKVSQNWPFIPR 213
Query: 185 FGDGSTRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMYDTIREYP 244
+ + +IQP++ D+A+ + + L+ GTS GK+YE G ++FT E +++ D +Y
Sbjct: 214 Y-NQQHKIQPLHCYDLASGILSILETPGTS-GKVYEFAGDEVFTWDEFLDMIIDGTAQYS 271
Query: 245 HYVKVPFPVAKA-VAMPREILLKKVPFPLPRPGLFNLDEINAYTSDTIVSDNALTFQDLG 303
K+ PV+ + E LL++ R F D+I+ + D + ALT +DL
Sbjct: 272 ---KLNIPVSNDFMKFISEHLLER----FARNPNFIKDQIDYHNQDMTTTVGALTLKDLN 324
Query: 304 IVPHKLKGYPTEYLIWYRKG 323
+ ++ YR G
Sbjct: 325 VTTTPIQEKLIRLSRMYRPG 344
>sp|P25284|NDUA9_NEUCR NADH-ubiquinone oxidoreductase 40 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-40 PE=1 SV=2
Length = 375
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 185/319 (57%), Gaps = 17/319 (5%)
Query: 7 GIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRD 66
G ATVFG TG LGRY+V +LA+ G V++PFR E + RHLK+ GDLG++V ++F+ R+
Sbjct: 51 GHTATVFGATGQLGRYIVNRLARQGCTVVIPFRD-EYNKRHLKVTGDLGKVVMIEFDLRN 109
Query: 67 DNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCLG 126
+I+ ++ ++VV NLIGR+Y T+N+SFEDV+ AERIA ++ + RFI +S
Sbjct: 110 TQSIEESVRHSDVVYNLIGRDYPTKNFSFEDVHIEGAERIAEAVAKY-DVDRFIHVSSYN 168
Query: 127 ASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRLLNKWAQFVKKFNFFPLFG 186
A +S F+TKA E+ V P TI+RPA M G EDRLL+K A VK L
Sbjct: 169 ADPNSECEFFATKARGEQVVRSIFPETTIVRPAPMFGFEDRLLHKLAS-VKNI----LTS 223
Query: 187 DG-STRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMYDTIREYPH 245
+G + PV+V+DV A+ L DD T+ + +EL GP +T E++E++ I +
Sbjct: 224 NGMQEKYNPVHVIDVGQALEQMLWDDNTA-SETFELYGPKTYTTAEISEMVDREIYKRRR 282
Query: 246 YVKVPFPVAKAVAMPREILLKKVPFPLPRPGLFNLDEINAYTSDTIVSDNALTFQDLGIV 305
+V VP + K +A +L K + +P + + DEI D ++ A TF+DLGI
Sbjct: 283 HVNVPKKILKPIAG---VLNKALWWP-----IMSADEIEREFHDQVIDPEAKTFKDLGIE 334
Query: 306 PHKLKGYPTEYLIWYRKGG 324
P + + YL YR
Sbjct: 335 PADIANFTYHYLQSYRSNA 353
>sp|Q5BK63|NDUA9_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Rattus norvegicus GN=Ndufa9 PE=1 SV=2
Length = 377
Score = 197 bits (501), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 182/317 (57%), Gaps = 12/317 (3%)
Query: 6 SGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPR 65
SG++ATVFG TGFLGRYVV L +MGSQV++P+R D HL+LMGDLGQ++ ++++ R
Sbjct: 52 SGVVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDIYDTMHLRLMGDLGQLIFLEWDAR 111
Query: 66 DDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCL 125
D ++I+ + +NVVINLIGRE+ETRN+ FEDV + IA +KE G+ RFI +S L
Sbjct: 112 DKDSIRKAVQHSNVVINLIGREWETRNFDFEDVFVNIPRAIAQASKE-AGVERFIHVSHL 170
Query: 126 GASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRLLNKWAQFVKKFNFFPLF 185
AS S ++ +KA E+ V P A I+RP+ M G EDR LN +A + + F PL
Sbjct: 171 NASMKSSAKSLRSKAVGEKEVRTVFPDAIIIRPSDMFGREDRFLNHFANY-RWFLAVPLV 229
Query: 186 GDG-STRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMYDTIREYP 244
G T QPVYV DV+ + A K+ ++GK + GP+ + + L + ++
Sbjct: 230 SLGFKTVKQPVYVADVSKGIANATKNPD-AIGKTFAFTGPNRYLLFHLVKYIFGMT---- 284
Query: 245 HYVKVPFPVAKAVAMPREILLKKVPFPLPRPGLFNLDEINAYTSDTIVSDNALTFQDLGI 304
H +P+P+ + V L PF P ++ I + SD + +D +DLG+
Sbjct: 285 HRTFIPYPLPRFVYSWIGRLFGLSPFE-PWTTKDKVERI--HISDVMATDLP-GLEDLGV 340
Query: 305 VPHKLKGYPTEYLIWYR 321
P L+ E L +R
Sbjct: 341 QPTPLELKSIEVLRRHR 357
>sp|P34943|NDUA9_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Bos taurus GN=NDUFA9 PE=1 SV=1
Length = 380
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 148/233 (63%), Gaps = 4/233 (1%)
Query: 6 SGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPR 65
SGI+ATVFG TGFLGRYVV L +MGSQV+VP R D HL+ MGDLGQI+ M +N R
Sbjct: 52 SGIVATVFGATGFLGRYVVNHLGRMGSQVIVPHRCEPYDTMHLRPMGDLGQIIFMDWNGR 111
Query: 66 DDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCL 125
D ++I+ + ++VVINL+GRE+ET+N+ FEDV + + IA ++KE G+ +FI IS L
Sbjct: 112 DKDSIRRAVEHSSVVINLVGREWETQNFDFEDVFVKIPQAIAQVSKE-AGVEKFIHISHL 170
Query: 126 GASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRLLNKWAQFVKKFNFFPLF 185
A S S+ +KA E+ V P ATI++PA + G EDR LN +A ++ F PL
Sbjct: 171 NADIKSSSKYLRSKAVGEKEVRETFPEATIIKPAEIFGREDRFLNYFAN-IRWFGGVPLI 229
Query: 186 GDGSTRI-QPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMY 237
G + QPVY+VDV + A+KD + GK + GP + + +L + ++
Sbjct: 230 SLGKKTVKQPVYIVDVTKGIINAIKDP-DARGKTFAFVGPSRYLLFDLVQYVF 281
>sp|Q0MQB4|NDUA9_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Pan troglodytes GN=NDUFA9 PE=2 SV=1
Length = 377
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 150/233 (64%), Gaps = 4/233 (1%)
Query: 6 SGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPR 65
SGI+ATVFG TGFLGRYVV L +MGSQV++P+R + D HL+ MGDLGQ++ ++++ R
Sbjct: 52 SGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDAR 111
Query: 66 DDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCL 125
D ++I+ + +NVVINLIGR++ET+NY FEDV + + IA ++KE G+ +FI +S L
Sbjct: 112 DKDSIRRVVQHSNVVINLIGRDWETKNYDFEDVFVKIPQAIAQLSKE-AGVEKFIHVSHL 170
Query: 126 GASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRLLNKWAQFVKKFNFFPLF 185
A+ S SR KA E+ V P A I++P+ + G EDR LN +A + +F PL
Sbjct: 171 NANIKSSSRYLRNKAVGEKVVRDAFPEAIIIKPSDIFGREDRFLNSFAS-MHRFGPIPLG 229
Query: 186 GDG-STRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMY 237
G T QPVYVVDV+ + A+KD + GK + GP + + L + ++
Sbjct: 230 SLGWKTVKQPVYVVDVSKGIVNAVKDPDAN-GKSFAFVGPSRYLLFHLVKYIF 281
>sp|P0CB82|NDUA9_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Pongo pygmaeus GN=NDUFA9 PE=2 SV=1
Length = 377
Score = 188 bits (477), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 150/233 (64%), Gaps = 4/233 (1%)
Query: 6 SGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPR 65
SGI+ATVFG TGFLGRYVV L +MGSQV++P+R D HL+ MGDLGQ++ ++++ R
Sbjct: 52 SGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDTYDIMHLRPMGDLGQLLFLEWDAR 111
Query: 66 DDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCL 125
D ++I+ + +NVVINLIGR++ETRN+ FEDV + + IA ++KE G+ +FI +S L
Sbjct: 112 DKDSIRRVVQHSNVVINLIGRDWETRNFDFEDVFVKIPQAIAQLSKE-AGVEKFIHVSHL 170
Query: 126 GASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRLLNKWAQFVKKFNFFPLF 185
A+ S SR KA E+ V P A I++P+ + G EDR LN +A + +F PL
Sbjct: 171 NANIKSSSRYLRNKAVGEKVVRDAFPEAIIIKPSDIFGREDRFLNSFAS-MHRFGPTPLG 229
Query: 186 GDG-STRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMY 237
G T QPVYVVDV+ + A+KD + GK + GP+ + + L + ++
Sbjct: 230 SLGWKTVKQPVYVVDVSKGIVNAVKDPDAN-GKSFAFVGPNRYLLFHLVKYIF 281
>sp|P0CB81|NDUA9_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Pongo abelii GN=NDUFA9 PE=2 SV=1
Length = 377
Score = 188 bits (477), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 150/233 (64%), Gaps = 4/233 (1%)
Query: 6 SGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPR 65
SGI+ATVFG TGFLGRYVV L +MGSQV++P+R D HL+ MGDLGQ++ ++++ R
Sbjct: 52 SGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDTYDIMHLRPMGDLGQLLFLEWDAR 111
Query: 66 DDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCL 125
D ++I+ + +NVVINLIGR++ETRN+ FEDV + + IA ++KE G+ +FI +S L
Sbjct: 112 DKDSIRRVVQHSNVVINLIGRDWETRNFDFEDVFVKIPQAIAQLSKE-AGVEKFIHVSHL 170
Query: 126 GASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRLLNKWAQFVKKFNFFPLF 185
A+ S SR KA E+ V P A I++P+ + G EDR LN +A + +F PL
Sbjct: 171 NANIKSSSRYLRNKAVGEKVVRDAFPEAIIIKPSDIFGREDRFLNSFAS-MHRFGPTPLG 229
Query: 186 GDG-STRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMY 237
G T QPVYVVDV+ + A+KD + GK + GP+ + + L + ++
Sbjct: 230 SLGWKTVKQPVYVVDVSKGIVNAVKDPDAN-GKSFAFVGPNRYLLFHLVKYIF 281
>sp|Q0MQB3|NDUA9_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFA9 PE=2
SV=2
Length = 377
Score = 187 bits (475), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 150/233 (64%), Gaps = 4/233 (1%)
Query: 6 SGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPR 65
SGI+ATVFG TGFLGRYVV L +MGSQV++P+R + D HL+ MGDLGQ++ ++++ R
Sbjct: 52 SGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDAR 111
Query: 66 DDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCL 125
D ++I+ + +NVVINLIGR++ET+N+ FEDV + + IA ++KE G+ +FI +S L
Sbjct: 112 DKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKE-AGVEKFIHVSHL 170
Query: 126 GASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRLLNKWAQFVKKFNFFPLF 185
A+ S SR KA E+ V P A I++P+ + G EDR LN +A + +F PL
Sbjct: 171 NANIKSSSRYLRNKAVGEKVVRDAFPEAIIIKPSDIFGREDRFLNSFAS-MHRFGPIPLG 229
Query: 186 GDG-STRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMY 237
G T QPVYVVDV+ + A+KD + GK + GP + + L + ++
Sbjct: 230 SLGWKTVKQPVYVVDVSKGIVNAVKDPDAN-GKSFAFVGPSRYLLFHLVKYIF 281
>sp|Q16795|NDUA9_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Homo sapiens GN=NDUFA9 PE=1 SV=2
Length = 377
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 150/233 (64%), Gaps = 4/233 (1%)
Query: 6 SGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPR 65
SGI+ATVFG TGFLGRYVV L +MGSQV++P+R + D HL+ MGDLGQ++ ++++ R
Sbjct: 52 SGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDAR 111
Query: 66 DDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCL 125
D ++I+ + +NVVINLIGR++ET+N+ FEDV + + IA ++KE G+ +FI +S L
Sbjct: 112 DKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKE-AGVEKFIHVSHL 170
Query: 126 GASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRLLNKWAQFVKKFNFFPLF 185
A+ S SR KA E+ V P A I++P+ + G EDR LN +A + +F PL
Sbjct: 171 NANIKSSSRYLRNKAVGEKVVRDAFPEAIIVKPSDIFGREDRFLNSFAS-MHRFGPIPLG 229
Query: 186 GDG-STRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMY 237
G T QPVYVVDV+ + A+KD + GK + GP + + L + ++
Sbjct: 230 SLGWKTVKQPVYVVDVSKGIVNAVKDPDAN-GKSFAFVGPSRYLLFHLVKYIF 281
>sp|Q9DC69|NDUA9_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Mus musculus GN=Ndufa9 PE=1 SV=2
Length = 377
Score = 184 bits (468), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 180/317 (56%), Gaps = 12/317 (3%)
Query: 6 SGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPR 65
SG++ATVFG TGFLGRYVV L +MGSQV++P+R D HL+LMGDLGQ+ ++++ R
Sbjct: 52 SGVVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDVYDIMHLRLMGDLGQLTFLEWDAR 111
Query: 66 DDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCL 125
D ++I+ + +NVVINLIGRE+ETRN+ FEDV + IA +KE G+ RFI +S L
Sbjct: 112 DKDSIRKAVQHSNVVINLIGREWETRNFDFEDVFVNIPRAIAQASKE-AGVERFIHVSHL 170
Query: 126 GASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRLLNKWAQFVKKFNFFPLF 185
AS S S+ +KA E+ V P A I+RP+ + G EDR LN +A + + F PL
Sbjct: 171 NASMKSSSKSLRSKAVGEKEVRSVFPEAIIIRPSDIFGREDRFLNHFANY-RWFLAVPLV 229
Query: 186 GDG-STRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMYDTIREYP 244
G T QPVYV DV+ + A KD ++GK + GP+ + + L + ++
Sbjct: 230 SLGFKTVKQPVYVADVSKGIVNATKDP-DAVGKTFAFTGPNRYLLFHLVKYIFGMT---- 284
Query: 245 HYVKVPFPVAKAVAMPREILLKKVPFPLPRPGLFNLDEINAYTSDTIVSDNALTFQDLGI 304
H +P+P+ V L PF P ++ I + SD + +D +DLG+
Sbjct: 285 HRTFIPYPLPLFVYSWIGKLFGLSPFE-PWTTKDKVERI--HISDVMPTDLP-GLEDLGV 340
Query: 305 VPHKLKGYPTEYLIWYR 321
P L+ E L +R
Sbjct: 341 QPTPLELKSIEVLRRHR 357
>sp|Q0DWQ7|CCB12_ORYSJ Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYCB1-2 PE=3 SV=1
Length = 391
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 107/153 (69%), Gaps = 18/153 (11%)
Query: 109 IAKEHGGIMRFIQISCLGASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRL 168
++KEHGG MRFIQ+SCLGAS+SS SR+ KAA EE+VL+E P P ++ +
Sbjct: 256 VSKEHGGFMRFIQVSCLGASASS-SRMLRAKAAGEESVLKEFP-----EPLRLL-----I 304
Query: 169 LNKWAQFVKKFNFFPLFGDGSTRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFT 228
++ + NF +RIQPVYVVDVAAA+ +LKDDGTSMGK Y LGGP+I+T
Sbjct: 305 SHRQSMGTCILNFH-------SRIQPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYT 357
Query: 229 VHELAELMYDTIREYPHYVKVPFPVAKAVAMPR 261
VH+LAELMY+TI E+P Y+ VP P+A+A+A P
Sbjct: 358 VHDLAELMYETICEWPRYIDVPLPIARAIASPE 390
>sp|Q6BLA6|FMP52_DEBHA Protein FMP52, mitochondrial OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=FMP52 PE=3 SV=1
Length = 226
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 94 SFEDVNHFMAERIAGIAKEHGGIMRFIQISCLGASSSSPSRVFSTKAAAEEAVLR-ELPW 152
+F+ +++ + A AKE GI F+ +S LGA+ SS +K E ++ E P
Sbjct: 84 NFKKIDYGINYECAKAAKE-AGIETFVLVSSLGANESSMLFYLKSKGKLENDIIALEFPR 142
Query: 153 ATIMRPAAMIGTEDR-------LLNKWAQFVK----KFNFFPLFGDGSTRI 192
I+RP A++G + + KW VK KF +P+ G+ ++
Sbjct: 143 TIIIRPGALLGKRQKSQGIANEIFQKWGNMVKGTPFKFTAYPITGEEVAKV 193
>sp|P75821|YBJS_ECOLI Uncharacterized protein YbjS OS=Escherichia coli (strain K12)
GN=ybjS PE=4 SV=2
Length = 337
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 111/286 (38%), Gaps = 40/286 (13%)
Query: 12 VFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIK 71
V G T LGR V+ L + G V R + MG L + + +F P D +
Sbjct: 5 VTGATSGLGRNAVEFLCQKGISVRATGRN--------EAMGKLLEKMGAEFVPADLTELV 56
Query: 72 ATMAKANVVINLIGREYETRNYSFE-------DVNHFMAERIAGIAKEHGGIMRFIQISC 124
++ AK V++ I + +++ D+ + A R G G+ FI IS
Sbjct: 57 SSQAK--VMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISS 114
Query: 125 LG-----------ASSSSPSRV---FSTKAAAEEAVLRELPWA------TIMRPAAMIGT 164
P R F+ AA E V+ L A TI+RP ++ G
Sbjct: 115 PSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRPQSLFGP 174
Query: 165 EDRL-LNKWAQFVKKFNFFPLFGDGSTRIQPVYVVDVAAAVTAALKD--DGTSMGKIYEL 221
D++ + + A + + L GS + Y + A+ A ++ D G++Y +
Sbjct: 175 HDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPSGRVYNI 234
Query: 222 GGPDIFTVHELAELMYDTIREYPHYVKVPFPVAKAVAMPREILLKK 267
+ T+ + + + D + VP+P+ +A E L +K
Sbjct: 235 TNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRK 280
>sp|Q92828|COR2A_HUMAN Coronin-2A OS=Homo sapiens GN=CORO2A PE=2 SV=2
Length = 525
Score = 38.1 bits (87), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 23 VVQQLAKMGSQVLVPFRGC-EDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVI 81
VV + A G+ +++P + DP + K+ G G ++ +K+NP DD I + A + I
Sbjct: 50 VVTECAGGGAFLVIPLHQTGKLDPHYPKVCGHRGNVLDVKWNPFDDFEIASCSEDATIKI 109
Query: 82 NLIGREYETRN---YSFEDVNHFMAERIAGIAKEH 113
I ++ TRN Y E V H A R+ G+ + H
Sbjct: 110 WSIPKQLLTRNLTAYRKELVGH--ARRV-GLVEWH 141
>sp|Q29RB4|OLF3A_DANRE Olfactomedin-like protein 3A OS=Danio rerio GN=olfml3a PE=2 SV=2
Length = 390
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 13/151 (8%)
Query: 100 HFMAERIAGIAKEHGGIMRFIQISCLGASSSSPSRVFSTKAAAEEAVLRELPWATIMRPA 159
H R A +E M Q+ L S + T + V RE+ + A
Sbjct: 41 HEQTSRYASELREFKQQM-VAQLEGLDKSKEALRSELDTVGTRVDRVEREMDYLETQNGA 99
Query: 160 A-MIGTEDRLLNKWAQFVKKFNF--FPLFGDGSTRIQPVYVVDVAAAVTAA----LKDDG 212
+ +D+L+ + FVK+ N + D S I + + + V A KD G
Sbjct: 100 QPCVDVDDKLVEQQVTFVKERNKAKYAKLTDCSDMISSIKAMKILKRVGGAKGMWTKDMG 159
Query: 213 TSMGKIYELGGPDIFTVHELAELMYDTIREY 243
++ GK+Y L G D TV E + T+RE+
Sbjct: 160 SATGKVYILNGTDDNTVFE-----FGTVREF 185
>sp|Q09125|RBS_PORAE Ribulose bisphosphate carboxylase small chain OS=Porphyridium
aerugineum GN=rbcS PE=3 SV=1
Length = 138
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 179 FNFFPLFGDGSTRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMYD 238
F+F P D + Q Y V AV+ DD +EL G +F V + + LMY+
Sbjct: 8 FSFLPDLTDAQIQKQVQYAVSKKWAVSVEYTDDPHPRNSFWELWGLPLFDVKDASALMYE 67
>sp|Q8C0P5|COR2A_MOUSE Coronin-2A OS=Mus musculus GN=Coro2a PE=2 SV=1
Length = 524
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 23 VVQQLAKMGSQVLVPFRGC-EDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVI 81
VV + A G+ +++P + DP + K+ G G ++ +K+NP +D I + A + I
Sbjct: 50 VVTECAGGGAFLVIPLHQTGKLDPHYPKVCGHRGNVLDIKWNPFNDFEIASCSEDATIKI 109
Query: 82 NLIGREYETRN---YSFEDVNHFMAERIAGIAKEH 113
I ++ TRN Y E + H A R+ G+ + H
Sbjct: 110 WNIPKQLLTRNLTTYRKELIGH--ARRV-GLVEWH 141
>sp|P23652|RBS_PYLLI Ribulose bisphosphate carboxylase small chain OS=Pylaiella
littoralis GN=rbcS PE=3 SV=1
Length = 139
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 179 FNFFPLFGDGSTRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMYD 238
F+F P D ++Q Y + AV+ DD +EL G +F V + A +MY+
Sbjct: 8 FSFLPDLSDEQIKLQVGYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYE 67
>sp|P49521|RBS_ODOSI Ribulose bisphosphate carboxylase small chain OS=Odontella sinensis
GN=rbcS PE=3 SV=1
Length = 139
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 179 FNFFPLFGDGSTRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMYD 238
F+F P D Q Y +D A+ DD +EL G +F + ++A +M++
Sbjct: 8 FSFLPDLTDQQIEKQIAYCIDKGWAMNVEWTDDPHPRNSYWELWGLPLFDIKDIASVMFE 67
>sp|Q4QQZ4|MAT2B_XENLA Methionine adenosyltransferase 2 subunit beta OS=Xenopus laevis
GN=mat2b PE=2 SV=1
Length = 334
Score = 34.7 bits (78), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 95/257 (36%), Gaps = 48/257 (18%)
Query: 10 ATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGC---EDDPRHLKLMGDLGQIVPMKFNPRD 66
A + G TG LGR V ++ + VL GC PR L N D
Sbjct: 31 ALITGATGLLGRAVYKEFKENSWHVL----GCGYSRARPRFECL------------NLLD 74
Query: 67 DNTIKATMA--KANVVINLIGRE----YETRNYSFEDVNHFMAERIAGIAKEHGGIMRFI 120
+ +KA + K +V+I+ E++ +N +E +A +A G + ++
Sbjct: 75 EAAVKALIQDFKPHVIIHCAAERRPDIVESQPELASLLNVVASENLAKVAAGVGAFLIYV 134
Query: 121 QISCLGASSSSPSRVFS----------TKAAAEEAVLRELPWATIMRPAAMIGTEDRL-- 168
+ +S P R S TK E AVL+ A ++R M G ++L
Sbjct: 135 SSDYVFDGTSPPYREDSIPHPLNLYGKTKLDGERAVLQNNEGAAVLRVPVMYGDVEKLSE 194
Query: 169 -----LNKWAQFVKKFNFFPLFGDGSTRIQPVYVVDVAAAV--TAALKDDGTSMGKIYEL 221
L QF K D + P +V DVA K S+ IY
Sbjct: 195 SAVTILFDKVQFSNKSANL----DHCQQRFPTHVKDVATVCLQLTERKIQDPSIKGIYHW 250
Query: 222 GGPDIFTVHELAELMYD 238
G + T +E+A M D
Sbjct: 251 SGNEQMTKYEIACAMAD 267
>sp|P24395|RBS_ECTSI Ribulose bisphosphate carboxylase small chain OS=Ectocarpus
siliculosus GN=rbcS PE=3 SV=1
Length = 139
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 179 FNFFPLFGDGSTRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMYD 238
F+F P D + Q Y + AV+ DD +EL G +F V + A +MY+
Sbjct: 8 FSFLPDLSDDQIKQQVSYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYE 67
>sp|P52580|IFRH_MAIZE Isoflavone reductase homolog IRL OS=Zea mays GN=IRL PE=2 SV=1
Length = 309
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Query: 12 VFGTTGFLGRYVVQQLAKMGSQVLVPFRGCE-DDPRH---LKLMGDLGQIVPMKFNPRDD 67
V G TG+LGR+VV A++G R DP LK D G + +K + D
Sbjct: 10 VVGGTGYLGRHVVAASARLGHPTSALVRDTAPSDPAKAALLKSFQDAG-VTLLKGDLYDQ 68
Query: 68 NTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRF 119
++ + + A+VVI+++G S + + R+ KE G + RF
Sbjct: 69 ASLVSAVKGADVVISVLG--------SMQIADQ---SRLVDAIKEAGNVKRF 109
>sp|P25458|RBS_ANTSP Ribulose bisphosphate carboxylase small chain OS=Antithamnion sp.
GN=rbcS PE=3 SV=1
Length = 138
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 179 FNFFPLFGDGSTRIQPVYVVDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMYD 238
F+F P D + Q Y V A+ DD +EL G +F ++++ +MY+
Sbjct: 8 FSFLPDLTDEQIKKQIAYAVSQNWAINIEFTDDPHPRNNYWELWGLPLFDINDVESVMYE 67
>sp|O49508|FB237_ARATH F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2
SV=1
Length = 380
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 126 GASSSSPSRVFSTKAAAEEAVLRELPWATIMRPAAMIGTEDRLLNKW-AQFVKKFNFFPL 184
G + SP++V E+ + I P+ +G +D +L KW A+F +
Sbjct: 145 GVTHHSPTQVLKN--------FDEIKFLKIELPSGELGIDDGVLLKWRAEFGSTLENCVI 196
Query: 185 FGDGSTRIQPVYV--VDVAAAVTAALKDDGTSMGKIYELGGPDIFTVHELAELMYDTIRE 242
G S+ I P + ++A AA++D+G+ Y GG + V ++ L+ + R
Sbjct: 197 LG-ASSVIPPTNSDKTEASSAPVAAVEDNGSIPESFYTNGGLKLRVVWTISSLIAASARH 255
Query: 243 Y 243
Y
Sbjct: 256 Y 256
>sp|Q5PPL3|NSDHL_RAT Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
OS=Rattus norvegicus GN=Nsdhl PE=2 SV=1
Length = 362
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 10 ATVFGTTGFLGRYVVQQLAKMGSQVLV-PFRGCEDDPRHLKLMGDL 54
TV G +GFLG+++V+QL G V V R D+PR +GDL
Sbjct: 29 CTVIGGSGFLGQHMVEQLLSRGYAVNVFDVRQGFDNPRVQFFIGDL 74
>sp|Q3ZBE9|NSDHL_BOVIN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
OS=Bos taurus GN=NSDHL PE=2 SV=1
Length = 356
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 10 ATVFGTTGFLGRYVVQQLAKMGSQVLV-PFRGCEDDPRHLKLMGDL 54
TV G GFLG+++V+QL G V V R D+PR +GDL
Sbjct: 23 CTVIGGCGFLGQHMVEQLLARGYAVNVFDIRQGFDNPRVQFFLGDL 68
>sp|Q3AM38|PNP_SYNSC Polyribonucleotide nucleotidyltransferase OS=Synechococcus sp.
(strain CC9605) GN=pnp PE=3 SV=1
Length = 721
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 41 CEDDPRHLKLMGDLG--QIVPMKFNPRDDNTIKATMAKA-----NVVINLIGREYETRNY 93
CE +L+ DLG Q+ P K P +D+T+ A + K + V++ + + R+
Sbjct: 211 CELIKAQEQLLKDLGITQVKPEK--PDEDSTVPAYLEKQCSKAISAVLSKFDQSKDERDT 268
Query: 94 SFEDVNHFMAERIAGIAKEH 113
+ E V ++E IAG+ ++H
Sbjct: 269 ALETVKGEVSETIAGLKEDH 288
>sp|Q5AP65|FMP52_CANAL Protein FMP52, mitochondrial OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=FMP52 PE=3 SV=1
Length = 229
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 70 IKATMAKANVVINLIG--REYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCLGA 127
IK+ ++V ++ G R +F+ +++ + A AKE+G + + +S +GA
Sbjct: 61 IKSQAVSSDVYLSAFGTTRAKAGSAENFKKIDYGINYSSAKAAKENGSKV-CVLVSSMGA 119
Query: 128 SSSSPSRVFSTKAAAEEAVLR-ELPWATIMRPAAMIG 163
++SSP TK E+ +++ I+RP A++G
Sbjct: 120 NASSPFLYMKTKGELEDDIIKLGFDHTVILRPGALLG 156
>sp|Q7D745|Y2525_MYCTU Putative trans-acting enoyl reductase MT2525 OS=Mycobacterium
tuberculosis GN=MT2525 PE=3 SV=2
Length = 419
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 12 VFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKL---MGDLGQIVP-MKFNPRDD 67
++G TGF+G+ + LA+ G + G R L + +G+ Q P + +
Sbjct: 12 LYGATGFVGKLTAEYLARAGGDARIALAG-RSTQRVLAVREALGESAQTWPILTADASLP 70
Query: 68 NTIKATMAKANVVINLIG 85
+T++A A+A VV+ +G
Sbjct: 71 STLQAMAARAQVVVTTVG 88
>sp|O53176|Y2449_MYCTU Putative trans-acting enoyl reductase Rv2449c OS=Mycobacterium
tuberculosis GN=Rv2449c PE=1 SV=3
Length = 419
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 12 VFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKL---MGDLGQIVP-MKFNPRDD 67
++G TGF+G+ + LA+ G + G R L + +G+ Q P + +
Sbjct: 12 LYGATGFVGKLTAEYLARAGGDARIALAG-RSTQRVLAVREALGESAQTWPILTADASLP 70
Query: 68 NTIKATMAKANVVINLIG 85
+T++A A+A VV+ +G
Sbjct: 71 STLQAMAARAQVVVTTVG 88
>sp|Q97TZ9|HTPX2_SULSO Protease HtpX homolog 2 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=htpX2 PE=3 SV=1
Length = 325
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 228 TVHELAELMYDTIREYP--HYVKVPFPVAKAVAMPREILLKKVPFPLPRPGLFNLDEINA 285
TV E+A+ Y+ RE P + VPFP A A P I K++ F LP L N DEI A
Sbjct: 88 TVAEVAK--YNGFREVPKVYIADVPFPNAFAYGSP--IAGKRIAFTLPILKLLNRDEIMA 143
>sp|P52577|IFRH_ARATH Isoflavone reductase homolog P3 OS=Arabidopsis thaliana
GN=At1g75280 PE=1 SV=1
Length = 310
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 12 VFGTTGFLGRYVVQQLAKMGSQVLVPFRGCE-DDP---RHLKLMGDLGQIVPMKFNPRDD 67
V G TG++G+++V+ AK G R DP + ++ DLG + + + D
Sbjct: 10 VIGGTGYIGKFLVEASAKAGHSTFALVREATLSDPVKGKTVQSFKDLG-VTILHGDLNDH 68
Query: 68 NTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFI 120
++ + + +VVI+ +G S + ++ +I KE G + RF+
Sbjct: 69 ESLVKAIKQVDVVISTVG--------SMQILDQ---TKIISAIKEAGNVKRFL 110
>sp|P45469|YRAR_ECOLI Uncharacterized protein YraR OS=Escherichia coli (strain K12)
GN=yraR PE=4 SV=2
Length = 211
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 22/180 (12%)
Query: 12 VFGTTGFLGRYVVQQLAKMG--SQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRD--- 66
+ G TG +G ++++ L + + P R + +GD+ P FNP D
Sbjct: 6 ITGATGLVGGHLLRMLINEPKVNAIAAPTR---------RPLGDM----PGVFNPHDPQL 52
Query: 67 DNTIKATMAKANVVINLIG--REYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISC 124
+ + ++V +G R +F ++ + A + G + +S
Sbjct: 53 SDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGA-QHMLVVSA 111
Query: 125 LGASSSSPSRVFSTKAAAEEAVL-RELPWATIMRPAAMIGTEDRLLNKWAQFVKKFNFFP 183
+GA++ SP K EEA++ + P TI RP+ ++G + F F P
Sbjct: 112 MGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLP 171
>sp|P0C2N7|DRS1_CHAGB ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=DRS1 PE=3 SV=1
Length = 795
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 17 GFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNP 64
G+LG Y+ + + +L C DP HL+L G P K P
Sbjct: 510 GYLGPYLQDPVHRTSHYLLQAEEDCSPDPDHLRLAGAFEHRAPWKHEP 557
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,457,632
Number of Sequences: 539616
Number of extensions: 5316912
Number of successful extensions: 12826
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 12784
Number of HSP's gapped (non-prelim): 40
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)