BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047630
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 22/123 (17%)
Query: 216 KGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF 275
KG GL FS D + + K P +++ G + ++ ++ + L+ F
Sbjct: 213 KGAAGL-FSWDYLFSLKSPLSVKAGEQV----------YIQYDLNKSNAELALDYGFIEP 261
Query: 276 IASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIY--RVLRPGGL 333
+R L + IS+ PFFD+ LD+ S FDI+ R L PG L
Sbjct: 262 NENRHAYTLTLEISESDPFFDDKLDVAES---------NGFAQTAYFDIFYNRTLPPGLL 312
Query: 334 FWL 336
+L
Sbjct: 313 PYL 315
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 22/151 (14%)
Query: 208 EKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRM---MERNITIVTT 264
E+ W G+ +D V+ +P + L++G AVRM + ++T
Sbjct: 33 EQKEWAMNVGDKKGKI-VDAVIQEHQPSVL---LELGAYCGYSAVRMARLLSPGARLITI 88
Query: 265 SMN-----LNGPFNNFIASRGVVPLYISISQRL------PFFDNTLDIVHSMHVLSNWIP 313
+N + +F + V L + SQ + + +TLD+V H ++P
Sbjct: 89 EINPDCAAITQRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLP 148
Query: 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA 344
TLL + +LR G + D+ C GA
Sbjct: 149 DTLL----LEECGLLRKGTVLLADNVICPGA 175
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 216 KGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF 275
KG GL FS D + + K P +++ G + ++ ++ + L+ F
Sbjct: 209 KGAAGL-FSWDYLFSLKSPLSVKAGEQV----------YIQYDLNKSNAELALDYGFIEP 257
Query: 276 IASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIY--RVLRPGGL 333
+R L + IS+ PFFD+ LD+ SN T FDI+ R L PG L
Sbjct: 258 NENRHAYTLTLEISESDPFFDDKLDVAE-----SNGFAQT----AYFDIFYNRTLPPGLL 308
Query: 334 FWL 336
+L
Sbjct: 309 PYL 311
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 22/151 (14%)
Query: 208 EKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRM---MERNITIVTT 264
E+ W G+ +D V+ +P + L++G AVRM + ++T
Sbjct: 33 EQKEWAMNVGDKKGKI-VDAVIQEHQPSVL---LELGAYCGYSAVRMARLLSPGARLITI 88
Query: 265 SMN-----LNGPFNNFIASRGVVPLYISISQRL------PFFDNTLDIVHSMHVLSNWIP 313
+N + +F + V L + SQ + + +TLD+V H ++P
Sbjct: 89 EINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLP 148
Query: 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA 344
TLL + +LR G + D+ C GA
Sbjct: 149 DTLL----LEECGLLRKGTVLLADNVICPGA 175
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 22/151 (14%)
Query: 208 EKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRM---MERNITIVTT 264
E+ W G+ +D V+ +P + L++G AVRM + ++T
Sbjct: 36 EQKEWAMNVGDKKGKI-VDAVIQEHQPSVL---LELGAYCGYSAVRMARLLSPGARLITI 91
Query: 265 SMN-----LNGPFNNFIASRGVVPLYISISQRL------PFFDNTLDIVHSMHVLSNWIP 313
+N + +F + V L + SQ + + +TLD+V H ++P
Sbjct: 92 EINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLP 151
Query: 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA 344
TLL + +LR G + D+ C GA
Sbjct: 152 DTLL----LEECGLLRKGTVLLADNVICPGA 178
>pdb|3MER|A Chain A, Crystal Structure Of The Methyltransferase Slr1183 From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
pdb|3MER|B Chain B, Crystal Structure Of The Methyltransferase Slr1183 From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
pdb|2KW5|A Chain A, Solution Nmr Structure Of The Slr1183 Protein From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
Length = 202
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 287 SISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF------F 340
++ L FD D + + +P++L L +Y+ L+PGG+F L+ F +
Sbjct: 80 TVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY 139
Query: 341 CVGAQLEDVYVPLIESVGFN--KLKWVVGRKLDR 372
G + +P +E++ L W++ L+R
Sbjct: 140 NTGGPKDLDLLPKLETLQSELPSLNWLIANNLER 173
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPF---NNFIASR 279
F+I +L K ++ +D+GGG+ + M++ + +T +NL G N A +
Sbjct: 177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEK 236
Query: 280 GVV 282
GV
Sbjct: 237 GVA 239
>pdb|1Z94|A Chain A, X-Ray Crystal Structure Of Protein Cv1439 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr12.
pdb|1Z94|B Chain B, X-Ray Crystal Structure Of Protein Cv1439 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr12.
pdb|1Z94|C Chain C, X-Ray Crystal Structure Of Protein Cv1439 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr12.
pdb|1Z94|D Chain D, X-Ray Crystal Structure Of Protein Cv1439 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr12.
pdb|1Z94|E Chain E, X-Ray Crystal Structure Of Protein Cv1439 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr12.
pdb|1Z94|F Chain F, X-Ray Crystal Structure Of Protein Cv1439 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr12
Length = 147
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 14/66 (21%)
Query: 72 EFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSYKVNASCPDDELLAQK 131
EFLAF SGQ FG GR L P E RY +A P D +
Sbjct: 55 EFLAFASGQKHAFG--------------GRYLELVPGERIRYTDRFDDAGLPGDXITTIT 100
Query: 132 LLLKGC 137
L C
Sbjct: 101 LAPLSC 106
>pdb|4APL|A Chain A, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|B Chain B, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|D Chain D, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|E Chain E, Crystal Structure Of Ama1 From Neospora Caninum
Length = 431
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 69 VPSEFLAFTSGQNLPFGFNTNFDSDTIYPPVGRACTLFPDELRRYMSYKVNAS 121
+P+E SG LP GFN NF + P G+ + +P EL S K+ AS
Sbjct: 83 IPTEAEYQKSGNPLPGGFNMNFVT-----PAGQRISPYPMELLE-KSSKIKAS 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,341,815
Number of Sequences: 62578
Number of extensions: 481696
Number of successful extensions: 968
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 13
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)