Query 047630
Match_columns 392
No_of_seqs 571 out of 2260
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 13:05:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 6.3E-40 1.4E-44 330.7 12.1 242 115-392 1-265 (506)
2 PRK11088 rrmA 23S rRNA methylt 99.8 4.1E-21 8.8E-26 185.4 11.3 170 122-339 5-182 (272)
3 COG2226 UbiE Methylase involve 99.8 1.6E-18 3.4E-23 163.7 14.6 127 233-367 51-225 (238)
4 PF01209 Ubie_methyltran: ubiE 99.7 6.5E-18 1.4E-22 159.9 9.3 130 228-365 42-219 (233)
5 PLN02233 ubiquinone biosynthes 99.7 1.2E-15 2.6E-20 146.7 14.7 129 229-365 69-247 (261)
6 PF03141 Methyltransf_29: Puta 99.6 5.8E-16 1.3E-20 157.4 10.5 208 142-387 293-506 (506)
7 PF08241 Methyltransf_11: Meth 99.6 8.4E-16 1.8E-20 122.6 9.4 91 241-336 1-95 (95)
8 PLN02244 tocopherol O-methyltr 99.6 1E-14 2.2E-19 145.4 16.1 125 238-367 120-279 (340)
9 PTZ00098 phosphoethanolamine N 99.6 8E-15 1.7E-19 141.2 14.3 130 231-366 50-202 (263)
10 PRK11207 tellurite resistance 99.6 1E-14 2.2E-19 134.5 14.2 133 226-367 23-171 (197)
11 PF13489 Methyltransf_23: Meth 99.6 1.4E-14 2.9E-19 127.1 12.8 131 221-363 9-160 (161)
12 KOG1540 Ubiquinone biosynthesi 99.6 2.2E-14 4.7E-19 134.5 12.4 119 240-363 104-278 (296)
13 PRK14103 trans-aconitate 2-met 99.6 5E-14 1.1E-18 134.7 15.2 124 239-369 32-187 (255)
14 PLN02396 hexaprenyldihydroxybe 99.6 1.9E-14 4.1E-19 142.2 11.8 122 239-365 134-288 (322)
15 PRK15068 tRNA mo(5)U34 methylt 99.6 6.6E-14 1.4E-18 138.6 14.9 125 239-369 125-277 (322)
16 PRK11036 putative S-adenosyl-L 99.5 1.6E-13 3.4E-18 131.3 13.7 124 239-367 47-208 (255)
17 PRK10258 biotin biosynthesis p 99.5 4.3E-13 9.3E-18 127.7 16.5 99 237-340 43-142 (251)
18 TIGR02752 MenG_heptapren 2-hep 99.5 4.1E-13 8.9E-18 125.9 15.8 129 231-367 43-219 (231)
19 TIGR00452 methyltransferase, p 99.5 2.9E-13 6.4E-18 133.3 15.3 127 239-371 124-278 (314)
20 PLN02490 MPBQ/MSBQ methyltrans 99.5 9E-13 2E-17 131.0 18.3 147 239-390 116-283 (340)
21 PLN02336 phosphoethanolamine N 99.5 3.1E-13 6.6E-18 140.3 14.5 122 239-365 269-413 (475)
22 PRK12335 tellurite resistance 99.5 5E-13 1.1E-17 130.2 15.0 149 231-388 118-286 (287)
23 TIGR00477 tehB tellurite resis 99.5 3.9E-13 8.5E-18 123.7 13.3 130 229-367 26-170 (195)
24 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.8E-13 8.2E-18 125.9 12.1 101 233-341 59-164 (243)
25 PRK05785 hypothetical protein; 99.5 1.2E-12 2.7E-17 123.3 14.7 86 240-332 55-141 (226)
26 PF05401 NodS: Nodulation prot 99.5 1.6E-12 3.4E-17 118.7 14.4 153 232-392 39-201 (201)
27 TIGR03587 Pse_Me-ase pseudamin 99.4 3.3E-12 7.1E-17 118.6 15.9 96 240-341 47-145 (204)
28 PRK15451 tRNA cmo(5)U34 methyl 99.4 9.7E-13 2.1E-17 125.4 12.3 96 240-340 60-166 (247)
29 PRK11873 arsM arsenite S-adeno 99.4 2E-12 4.2E-17 124.7 13.8 130 230-367 74-231 (272)
30 PF02353 CMAS: Mycolic acid cy 99.4 1.5E-12 3.2E-17 126.1 12.8 129 230-367 59-218 (273)
31 PRK00216 ubiE ubiquinone/menaq 99.4 1E-11 2.2E-16 116.1 17.2 122 239-365 54-224 (239)
32 PF08003 Methyltransf_9: Prote 99.4 2.6E-12 5.6E-17 124.3 13.1 128 239-372 118-273 (315)
33 smart00828 PKS_MT Methyltransf 99.4 2.3E-12 5E-17 120.3 12.6 123 239-367 2-145 (224)
34 PF12847 Methyltransf_18: Meth 99.4 8E-13 1.7E-17 109.5 8.4 99 234-338 2-111 (112)
35 PF03848 TehB: Tellurite resis 99.4 2.2E-12 4.7E-17 118.4 11.2 133 226-365 23-168 (192)
36 PRK08317 hypothetical protein; 99.4 1E-11 2.2E-16 115.6 15.5 128 231-366 17-176 (241)
37 TIGR00740 methyltransferase, p 99.4 3.4E-12 7.3E-17 120.8 12.0 96 240-340 57-163 (239)
38 PF13649 Methyltransf_25: Meth 99.4 7.6E-13 1.6E-17 108.5 6.1 90 240-332 1-101 (101)
39 PRK04266 fibrillarin; Provisio 99.4 2.6E-11 5.6E-16 114.4 16.9 136 221-367 58-211 (226)
40 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 2.4E-11 5.2E-16 112.4 15.3 122 239-365 42-209 (223)
41 TIGR02072 BioC biotin biosynth 99.3 1.6E-11 3.5E-16 114.5 13.5 122 238-365 36-175 (240)
42 TIGR02716 C20_methyl_CrtF C-20 99.3 1.7E-11 3.7E-16 120.2 13.9 123 238-364 151-304 (306)
43 TIGR03840 TMPT_Se_Te thiopurin 99.3 3.2E-11 6.9E-16 112.8 14.2 126 233-365 34-186 (213)
44 PF13847 Methyltransf_31: Meth 99.3 1.5E-11 3.3E-16 108.2 11.2 95 240-340 7-112 (152)
45 COG2230 Cfa Cyclopropane fatty 99.3 1.4E-11 3E-16 118.8 11.8 131 227-366 66-223 (283)
46 PF05148 Methyltransf_8: Hypot 99.3 2.5E-11 5.3E-16 111.7 12.7 141 220-389 59-199 (219)
47 PLN02336 phosphoethanolamine N 99.3 1.5E-11 3.2E-16 127.7 11.9 126 239-367 40-183 (475)
48 PRK06202 hypothetical protein; 99.3 5.3E-11 1.1E-15 112.1 14.4 120 238-363 62-219 (232)
49 TIGR00537 hemK_rel_arch HemK-r 99.3 1.2E-10 2.5E-15 105.5 15.3 133 223-365 9-164 (179)
50 TIGR02021 BchM-ChlM magnesium 99.3 4.4E-11 9.5E-16 111.6 12.9 123 238-366 57-206 (219)
51 PRK01683 trans-aconitate 2-met 99.3 3.4E-11 7.3E-16 115.0 11.3 94 239-338 34-130 (258)
52 KOG1270 Methyltransferases [Co 99.2 1E-11 2.3E-16 117.2 7.0 118 240-365 93-248 (282)
53 TIGR02081 metW methionine bios 99.2 1.4E-10 3E-15 106.4 13.9 134 240-380 17-181 (194)
54 COG2264 PrmA Ribosomal protein 99.2 1.3E-10 2.8E-15 113.0 14.0 118 238-365 164-287 (300)
55 PRK11705 cyclopropane fatty ac 99.2 1.3E-10 2.9E-15 117.7 14.5 126 230-365 164-311 (383)
56 PRK13255 thiopurine S-methyltr 99.2 1.6E-10 3.5E-15 108.4 13.6 129 233-368 37-192 (218)
57 KOG4300 Predicted methyltransf 99.2 3.5E-11 7.6E-16 110.0 8.6 94 241-339 81-183 (252)
58 PRK08287 cobalt-precorrin-6Y C 99.2 2.5E-10 5.4E-15 104.0 14.3 120 230-365 28-155 (187)
59 PRK00121 trmB tRNA (guanine-N( 99.2 5.4E-11 1.2E-15 110.2 9.6 120 238-362 42-177 (202)
60 PF08242 Methyltransf_12: Meth 99.2 9.8E-12 2.1E-16 101.2 4.1 89 241-334 1-99 (99)
61 KOG1541 Predicted protein carb 99.2 9.9E-11 2.2E-15 108.0 11.1 133 228-364 43-188 (270)
62 KOG3045 Predicted RNA methylas 99.2 7.9E-11 1.7E-15 110.9 10.4 139 220-389 167-305 (325)
63 smart00138 MeTrc Methyltransfe 99.2 1E-10 2.2E-15 112.8 11.6 97 239-338 102-242 (264)
64 PRK00107 gidB 16S rRNA methylt 99.2 3.3E-10 7.3E-15 103.8 14.2 130 240-387 49-186 (187)
65 COG4976 Predicted methyltransf 99.2 3.2E-11 6.9E-16 111.8 7.4 143 221-368 110-267 (287)
66 PRK00517 prmA ribosomal protei 99.2 1.8E-10 3.8E-15 110.1 12.5 138 222-388 107-250 (250)
67 KOG2361 Predicted methyltransf 99.2 2.5E-10 5.4E-15 106.7 12.9 147 240-389 75-264 (264)
68 PRK06922 hypothetical protein; 99.2 7.6E-11 1.6E-15 124.7 10.7 107 228-339 413-538 (677)
69 PRK11188 rrmJ 23S rRNA methylt 99.2 4.2E-10 9.1E-15 104.9 14.1 131 240-383 55-204 (209)
70 KOG1271 Methyltransferases [Ge 99.2 3.1E-10 6.7E-15 102.0 12.2 173 206-387 36-226 (227)
71 PF06325 PrmA: Ribosomal prote 99.2 3.6E-10 7.8E-15 110.4 13.9 128 239-388 164-295 (295)
72 TIGR00138 gidB 16S rRNA methyl 99.2 2.9E-10 6.4E-15 103.6 11.7 115 240-365 46-168 (181)
73 PF07021 MetW: Methionine bios 99.2 2.7E-10 5.9E-15 103.8 11.2 125 232-368 12-169 (193)
74 PLN02232 ubiquinone biosynthes 99.1 1.7E-10 3.7E-15 103.0 9.2 98 265-365 2-146 (160)
75 TIGR01983 UbiG ubiquinone bios 99.1 1.1E-09 2.3E-14 102.1 14.7 122 239-365 48-202 (224)
76 PRK05134 bifunctional 3-demeth 99.1 7.1E-10 1.5E-14 104.2 13.4 121 240-365 52-204 (233)
77 PRK14968 putative methyltransf 99.1 3E-09 6.6E-14 95.9 16.6 125 232-365 22-172 (188)
78 PRK07580 Mg-protoporphyrin IX 99.1 1.1E-09 2.4E-14 102.3 13.9 123 239-367 66-215 (230)
79 TIGR00091 tRNA (guanine-N(7)-) 99.1 3.1E-10 6.7E-15 104.4 9.4 118 239-362 19-154 (194)
80 PLN02585 magnesium protoporphy 99.1 2.5E-09 5.5E-14 105.6 14.6 120 239-365 147-298 (315)
81 TIGR00438 rrmJ cell division p 99.0 2.1E-09 4.4E-14 98.2 12.3 139 228-382 27-184 (188)
82 PF05175 MTS: Methyltransferas 99.0 2.7E-09 5.9E-14 96.1 12.7 111 221-338 20-140 (170)
83 TIGR01177 conserved hypothetic 99.0 2.1E-09 4.6E-14 106.7 12.9 126 228-365 177-314 (329)
84 TIGR02469 CbiT precorrin-6Y C5 99.0 2.3E-09 5E-14 89.8 11.0 92 239-338 22-122 (124)
85 PTZ00146 fibrillarin; Provisio 99.0 4.8E-09 1E-13 102.0 14.6 143 231-388 130-289 (293)
86 TIGR03534 RF_mod_PrmC protein- 99.0 2.9E-09 6.4E-14 100.6 12.8 137 221-365 73-240 (251)
87 TIGR00406 prmA ribosomal prote 99.0 2.9E-09 6.3E-14 103.9 12.9 112 239-364 162-281 (288)
88 PRK00377 cbiT cobalt-precorrin 99.0 1.8E-08 3.8E-13 92.9 16.0 121 231-365 38-171 (198)
89 COG4106 Tam Trans-aconitate me 99.0 2E-09 4.4E-14 99.2 9.4 106 229-338 23-129 (257)
90 PRK13944 protein-L-isoaspartat 99.0 3.7E-09 8E-14 98.1 10.9 96 229-338 68-173 (205)
91 PRK09489 rsmC 16S ribosomal RN 99.0 1.3E-08 2.7E-13 101.8 15.1 111 220-338 184-303 (342)
92 PRK15001 SAM-dependent 23S rib 99.0 2.6E-09 5.6E-14 107.8 10.0 113 219-338 215-340 (378)
93 PF00891 Methyltransf_2: O-met 99.0 3.8E-09 8.2E-14 100.0 10.3 109 229-342 93-203 (241)
94 PF05219 DREV: DREV methyltran 98.9 2.3E-08 5.1E-13 95.0 14.9 126 236-369 94-243 (265)
95 PRK14967 putative methyltransf 98.9 2.2E-08 4.8E-13 93.9 14.3 124 232-364 35-182 (223)
96 PF05724 TPMT: Thiopurine S-me 98.9 7.7E-09 1.7E-13 97.1 11.1 127 240-370 41-194 (218)
97 PRK09328 N5-glutamine S-adenos 98.9 2.4E-08 5.2E-13 96.0 14.6 138 221-365 93-261 (275)
98 PRK14121 tRNA (guanine-N(7)-)- 98.9 5.2E-09 1.1E-13 105.6 10.3 97 239-338 125-235 (390)
99 TIGR00080 pimt protein-L-isoas 98.9 6.4E-09 1.4E-13 97.0 9.8 96 228-337 72-176 (215)
100 PLN03075 nicotianamine synthas 98.9 1.3E-08 2.8E-13 99.3 12.2 98 238-339 125-234 (296)
101 PF06080 DUF938: Protein of un 98.9 3.1E-08 6.7E-13 91.5 13.9 125 240-365 29-191 (204)
102 PRK13942 protein-L-isoaspartat 98.9 1.2E-08 2.6E-13 95.2 10.9 97 228-338 71-176 (212)
103 COG2813 RsmC 16S RNA G1207 met 98.9 2.6E-08 5.7E-13 96.6 13.2 114 218-339 144-267 (300)
104 PF13659 Methyltransf_26: Meth 98.9 5E-09 1.1E-13 87.4 7.1 98 239-338 3-115 (117)
105 PRK10901 16S rRNA methyltransf 98.9 6.8E-08 1.5E-12 99.3 16.7 138 221-363 232-398 (427)
106 TIGR03438 probable methyltrans 98.9 3.3E-08 7.2E-13 97.1 13.4 97 240-339 67-178 (301)
107 PF05891 Methyltransf_PK: AdoM 98.9 3.5E-08 7.5E-13 91.8 12.6 131 236-369 55-204 (218)
108 TIGR03533 L3_gln_methyl protei 98.9 4.4E-08 9.5E-13 95.5 14.1 117 239-363 124-271 (284)
109 PRK14966 unknown domain/N5-glu 98.8 6.8E-08 1.5E-12 98.2 14.7 136 221-365 238-404 (423)
110 TIGR00536 hemK_fam HemK family 98.8 5.1E-08 1.1E-12 95.0 13.2 137 221-364 98-267 (284)
111 PRK14901 16S rRNA methyltransf 98.8 1.2E-07 2.6E-12 97.8 16.0 161 221-388 240-433 (434)
112 PRK07402 precorrin-6B methylas 98.8 8.7E-08 1.9E-12 88.0 13.5 103 226-340 33-144 (196)
113 KOG3010 Methyltransferase [Gen 98.8 2E-08 4.4E-13 94.1 9.1 103 224-334 23-132 (261)
114 cd02440 AdoMet_MTases S-adenos 98.8 4E-08 8.6E-13 77.5 9.6 94 240-337 2-103 (107)
115 PRK11805 N5-glutamine S-adenos 98.8 1.2E-07 2.5E-12 93.6 14.5 134 221-362 117-282 (307)
116 COG2521 Predicted archaeal met 98.8 7.7E-08 1.7E-12 89.8 12.0 128 234-365 135-276 (287)
117 COG2890 HemK Methylase of poly 98.8 1.6E-07 3.4E-12 91.5 14.6 133 221-359 96-255 (280)
118 COG4123 Predicted O-methyltran 98.8 1.2E-07 2.7E-12 90.1 13.4 124 237-367 45-195 (248)
119 PHA03411 putative methyltransf 98.8 9.6E-08 2.1E-12 92.2 12.6 120 239-361 67-209 (279)
120 PRK00312 pcm protein-L-isoaspa 98.8 6.5E-08 1.4E-12 89.9 11.1 98 228-339 73-176 (212)
121 PRK14902 16S rRNA methyltransf 98.8 2.1E-07 4.6E-12 96.1 16.1 139 221-364 238-406 (444)
122 PRK13256 thiopurine S-methyltr 98.8 9.9E-08 2.1E-12 89.9 12.4 114 240-356 47-188 (226)
123 TIGR03704 PrmC_rel_meth putati 98.7 1.4E-07 3E-12 90.4 13.1 134 221-361 70-235 (251)
124 TIGR00446 nop2p NOL1/NOP2/sun 98.7 3.3E-07 7.1E-12 88.4 15.5 132 221-357 59-218 (264)
125 COG2242 CobL Precorrin-6B meth 98.7 6E-07 1.3E-11 81.6 15.6 129 224-368 25-163 (187)
126 PRK01544 bifunctional N5-gluta 98.7 1.1E-07 2.5E-12 99.7 12.6 120 238-364 140-291 (506)
127 PRK14904 16S rRNA methyltransf 98.7 4.3E-07 9.4E-12 93.9 16.6 136 221-362 238-402 (445)
128 TIGR00563 rsmB ribosomal RNA s 98.7 4.1E-07 8.9E-12 93.6 15.8 135 221-360 226-391 (426)
129 PF03291 Pox_MCEL: mRNA cappin 98.6 2.4E-08 5.2E-13 99.3 4.6 100 238-339 64-187 (331)
130 PRK14903 16S rRNA methyltransf 98.6 4.2E-07 9E-12 93.7 13.3 138 221-363 225-392 (431)
131 KOG1975 mRNA cap methyltransfe 98.6 1.9E-07 4.2E-12 90.8 8.0 98 238-338 119-237 (389)
132 KOG2940 Predicted methyltransf 98.5 1E-07 2.2E-12 88.7 5.9 123 237-365 73-226 (325)
133 smart00650 rADc Ribosomal RNA 98.5 4.4E-07 9.5E-12 81.4 9.1 99 231-338 11-113 (169)
134 PRK13943 protein-L-isoaspartat 98.5 6.1E-07 1.3E-11 89.0 9.8 94 230-337 77-179 (322)
135 KOG3178 Hydroxyindole-O-methyl 98.5 1E-06 2.2E-11 86.9 11.3 123 236-366 177-330 (342)
136 PF02390 Methyltransf_4: Putat 98.5 4.7E-07 1E-11 83.6 7.8 119 239-363 20-157 (195)
137 PRK13168 rumA 23S rRNA m(5)U19 98.4 5.2E-06 1.1E-10 85.9 16.0 135 221-368 282-426 (443)
138 PF01135 PCMT: Protein-L-isoas 98.4 4.5E-07 9.8E-12 84.6 6.9 98 227-338 66-172 (209)
139 COG2518 Pcm Protein-L-isoaspar 98.4 1.4E-06 3E-11 80.8 9.6 104 221-339 60-170 (209)
140 PRK01581 speE spermidine synth 98.4 3.5E-06 7.6E-11 84.4 12.3 129 236-367 150-298 (374)
141 PHA03412 putative methyltransf 98.4 1.8E-06 3.9E-11 81.7 9.5 117 240-359 53-195 (241)
142 COG1041 Predicted DNA modifica 98.4 4.7E-06 1E-10 82.6 12.7 150 206-368 169-332 (347)
143 PRK04457 spermidine synthase; 98.4 1.8E-06 3.8E-11 83.3 9.3 117 238-360 68-196 (262)
144 PRK03522 rumB 23S rRNA methylu 98.4 7.6E-06 1.6E-10 80.9 14.0 116 239-368 176-298 (315)
145 PF01739 CheR: CheR methyltran 98.3 2.1E-06 4.6E-11 79.3 8.8 99 235-338 31-175 (196)
146 PRK03612 spermidine synthase; 98.3 4.2E-06 9.1E-11 88.3 11.7 122 237-361 298-439 (521)
147 PRK11783 rlmL 23S rRNA m(2)G24 98.3 3.5E-06 7.6E-11 91.9 11.2 126 231-365 536-679 (702)
148 PLN02781 Probable caffeoyl-CoA 98.3 4.6E-06 1E-10 79.1 10.4 108 222-340 57-180 (234)
149 PRK00811 spermidine synthase; 98.3 2.7E-06 5.9E-11 82.9 9.0 98 237-337 77-190 (283)
150 KOG2899 Predicted methyltransf 98.3 8.5E-06 1.8E-10 76.7 11.5 96 240-338 62-209 (288)
151 PF12147 Methyltransf_20: Puta 98.3 1.6E-05 3.5E-10 76.9 13.6 129 234-365 134-297 (311)
152 PLN02672 methionine S-methyltr 98.3 5.6E-06 1.2E-10 93.1 11.9 140 221-365 102-303 (1082)
153 KOG1499 Protein arginine N-met 98.3 1.5E-06 3.3E-11 85.7 6.3 98 238-335 62-164 (346)
154 KOG1331 Predicted methyltransf 98.2 1.5E-06 3.3E-11 83.5 5.8 95 240-339 49-144 (293)
155 COG2519 GCD14 tRNA(1-methylade 98.2 8.5E-06 1.8E-10 77.4 10.6 123 223-362 84-216 (256)
156 PRK10611 chemotaxis methyltran 98.2 4E-06 8.6E-11 81.9 8.2 56 282-338 206-262 (287)
157 PF07942 N2227: N2227-like pro 98.2 2.8E-05 6.1E-10 75.1 13.7 141 221-366 37-242 (270)
158 PRK15128 23S rRNA m(5)C1962 me 98.2 9E-06 2E-10 82.9 10.4 122 231-358 218-361 (396)
159 COG1352 CheR Methylase of chem 98.2 1.4E-05 3.1E-10 77.2 10.9 102 235-338 96-241 (268)
160 PF11968 DUF3321: Putative met 98.2 4.4E-05 9.5E-10 71.1 13.6 118 239-368 54-183 (219)
161 COG0220 Predicted S-adenosylme 98.1 9.4E-06 2E-10 76.7 7.9 100 238-338 50-164 (227)
162 TIGR00417 speE spermidine synt 98.1 2E-05 4.4E-10 76.2 10.4 97 238-337 74-185 (270)
163 TIGR02085 meth_trns_rumB 23S r 98.1 5.6E-05 1.2E-09 76.6 13.9 116 239-368 236-358 (374)
164 TIGR00479 rumA 23S rRNA (uraci 98.1 3.2E-05 7E-10 79.6 12.4 132 221-367 277-421 (431)
165 PRK10909 rsmD 16S rRNA m(2)G96 98.1 2.4E-05 5.3E-10 72.5 10.2 96 239-340 56-161 (199)
166 PRK14896 ksgA 16S ribosomal RN 98.1 1.1E-05 2.4E-10 77.5 8.1 73 230-309 26-102 (258)
167 PLN02366 spermidine synthase 98.1 6.2E-05 1.3E-09 74.3 13.2 124 237-364 92-233 (308)
168 PRK11727 23S rRNA mA1618 methy 98.1 7.1E-05 1.5E-09 74.2 13.5 73 238-310 116-201 (321)
169 PF10294 Methyltransf_16: Puta 98.0 2.5E-05 5.4E-10 70.7 9.1 101 238-341 47-159 (173)
170 PF08704 GCD14: tRNA methyltra 98.0 2.7E-05 6E-10 74.4 9.6 125 224-364 31-169 (247)
171 COG0500 SmtA SAM-dependent met 98.0 3.7E-05 8E-10 63.0 9.3 96 240-341 52-158 (257)
172 COG2263 Predicted RNA methylas 98.0 0.00018 3.8E-09 65.7 13.7 116 239-367 48-170 (198)
173 PRK01544 bifunctional N5-gluta 98.0 2.2E-05 4.8E-10 82.6 9.0 124 236-363 347-485 (506)
174 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.0 5.8E-05 1.3E-09 72.5 10.8 86 298-387 158-256 (256)
175 PRK00274 ksgA 16S ribosomal RN 98.0 1.6E-05 3.5E-10 77.0 7.0 73 231-308 40-115 (272)
176 KOG3191 Predicted N6-DNA-methy 98.0 0.00024 5.3E-09 64.4 13.9 122 235-362 42-189 (209)
177 TIGR00478 tly hemolysin TlyA f 98.0 0.00012 2.7E-09 69.2 12.7 115 239-367 78-218 (228)
178 PLN02476 O-methyltransferase 97.9 7.5E-05 1.6E-09 72.6 10.9 109 222-341 107-231 (278)
179 PF05185 PRMT5: PRMT5 arginine 97.9 3.6E-05 7.9E-10 79.7 9.3 96 238-335 188-294 (448)
180 TIGR00755 ksgA dimethyladenosi 97.9 5.2E-05 1.1E-09 72.5 9.5 67 238-308 31-104 (253)
181 PF01728 FtsJ: FtsJ-like methy 97.9 2.4E-05 5.2E-10 70.7 6.5 133 236-381 23-176 (181)
182 KOG1269 SAM-dependent methyltr 97.9 2.1E-05 4.5E-10 79.2 6.4 101 231-339 108-216 (364)
183 PF01596 Methyltransf_3: O-met 97.9 4.5E-05 9.8E-10 71.0 8.0 108 223-341 35-158 (205)
184 COG4122 Predicted O-methyltran 97.9 8.4E-05 1.8E-09 69.7 9.7 111 221-342 47-170 (219)
185 PRK11933 yebU rRNA (cytosine-C 97.8 0.00027 5.8E-09 73.6 13.8 133 221-358 99-262 (470)
186 KOG1661 Protein-L-isoaspartate 97.8 8.8E-05 1.9E-09 68.6 8.8 94 231-338 80-193 (237)
187 PF01170 UPF0020: Putative RNA 97.8 9.2E-05 2E-09 67.4 8.5 127 228-367 23-172 (179)
188 PRK04148 hypothetical protein; 97.8 0.00031 6.7E-09 61.0 11.1 92 239-341 19-112 (134)
189 KOG2904 Predicted methyltransf 97.7 0.00061 1.3E-08 65.5 13.0 99 239-339 151-286 (328)
190 COG0293 FtsJ 23S rRNA methylas 97.7 0.00076 1.7E-08 62.6 13.4 133 240-385 49-200 (205)
191 PTZ00338 dimethyladenosine tra 97.7 8E-05 1.7E-09 73.1 7.1 71 231-308 34-111 (294)
192 TIGR00095 RNA methyltransferas 97.6 0.00049 1.1E-08 63.2 9.6 95 240-340 53-161 (189)
193 PLN02589 caffeoyl-CoA O-methyl 97.5 0.00036 7.7E-09 66.9 8.3 108 222-340 68-192 (247)
194 KOG1500 Protein arginine N-met 97.5 0.00078 1.7E-08 66.3 10.4 118 237-359 178-305 (517)
195 COG2520 Predicted methyltransf 97.4 0.002 4.3E-08 64.4 12.3 125 240-371 192-327 (341)
196 COG3963 Phospholipid N-methylt 97.4 0.0019 4.1E-08 58.0 10.8 99 240-341 52-159 (194)
197 PRK05031 tRNA (uracil-5-)-meth 97.4 0.0025 5.4E-08 64.4 13.0 132 221-368 192-345 (362)
198 PF02475 Met_10: Met-10+ like- 97.4 0.00025 5.3E-09 65.8 5.2 92 232-334 100-198 (200)
199 PF02527 GidB: rRNA small subu 97.2 0.0021 4.6E-08 58.8 9.8 116 239-365 51-174 (184)
200 COG0030 KsgA Dimethyladenosine 97.2 0.0009 1.9E-08 64.3 7.4 90 208-308 8-105 (259)
201 PRK04338 N(2),N(2)-dimethylgua 97.2 0.00078 1.7E-08 68.5 7.4 90 240-338 61-158 (382)
202 COG0144 Sun tRNA and rRNA cyto 97.1 0.02 4.3E-07 57.8 16.5 137 221-362 144-313 (355)
203 KOG3987 Uncharacterized conser 97.1 0.00018 3.8E-09 66.5 1.4 137 224-368 97-262 (288)
204 PF01269 Fibrillarin: Fibrilla 97.1 0.0096 2.1E-07 55.9 12.8 143 231-387 71-229 (229)
205 COG1092 Predicted SAM-dependen 97.1 0.01 2.3E-07 60.4 14.0 125 231-360 215-360 (393)
206 TIGR03439 methyl_EasF probable 97.1 0.012 2.5E-07 58.6 13.9 139 240-381 80-259 (319)
207 PLN02823 spermine synthase 97.1 0.0023 4.9E-08 64.0 8.6 99 236-337 103-219 (336)
208 TIGR02143 trmA_only tRNA (urac 97.0 0.01 2.2E-07 59.7 13.4 130 221-368 183-336 (353)
209 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.0018 4E-08 63.5 7.7 132 221-357 34-204 (311)
210 KOG1663 O-methyltransferase [S 97.0 0.0049 1.1E-07 57.9 10.0 110 223-341 63-186 (237)
211 PF09243 Rsm22: Mitochondrial 97.0 0.012 2.6E-07 57.2 12.7 135 221-362 18-164 (274)
212 KOG0820 Ribosomal RNA adenine 97.0 0.0032 7E-08 60.6 8.4 71 231-308 56-133 (315)
213 PRK11760 putative 23S rRNA C24 97.0 0.0066 1.4E-07 60.6 10.8 83 239-331 214-296 (357)
214 KOG2798 Putative trehalase [Ca 96.9 0.011 2.3E-07 58.0 11.8 142 221-368 131-339 (369)
215 COG4798 Predicted methyltransf 96.8 0.0053 1.1E-07 56.4 8.3 129 230-363 45-202 (238)
216 PRK00536 speE spermidine synth 96.8 0.0087 1.9E-07 57.8 10.3 115 234-363 70-196 (262)
217 KOG2352 Predicted spermine/spe 96.8 0.0072 1.6E-07 62.4 9.6 99 239-339 51-162 (482)
218 COG0421 SpeE Spermidine syntha 96.7 0.0092 2E-07 58.3 9.7 100 235-337 75-189 (282)
219 PF03602 Cons_hypoth95: Conser 96.7 0.0037 8.1E-08 57.2 6.0 101 233-341 42-156 (183)
220 COG1189 Predicted rRNA methyla 96.6 0.069 1.5E-06 50.6 14.3 123 239-367 82-225 (245)
221 COG0357 GidB Predicted S-adeno 96.6 0.036 7.8E-07 52.0 12.4 121 238-368 69-197 (215)
222 PF01564 Spermine_synth: Sperm 96.6 0.056 1.2E-06 51.7 13.8 126 236-365 76-218 (246)
223 PF05958 tRNA_U5-meth_tr: tRNA 96.5 0.058 1.3E-06 54.3 13.9 148 221-387 182-351 (352)
224 COG2265 TrmA SAM-dependent met 96.5 0.026 5.7E-07 58.4 11.5 134 221-365 278-419 (432)
225 PF04672 Methyltransf_19: S-ad 96.4 0.02 4.3E-07 55.4 9.4 105 236-342 68-194 (267)
226 COG4627 Uncharacterized protei 96.4 0.0006 1.3E-08 60.3 -0.9 56 282-338 31-86 (185)
227 PF04816 DUF633: Family of unk 96.3 0.11 2.4E-06 48.4 13.6 116 240-368 1-126 (205)
228 PRK13699 putative methylase; P 96.3 0.016 3.5E-07 54.8 8.0 84 283-370 3-100 (227)
229 PRK11783 rlmL 23S rRNA m(2)G24 96.2 0.029 6.2E-07 61.6 10.8 98 239-338 193-347 (702)
230 PF00398 RrnaAD: Ribosomal RNA 96.2 0.01 2.3E-07 57.1 6.5 105 208-326 8-119 (262)
231 KOG2915 tRNA(1-methyladenosine 96.2 0.07 1.5E-06 51.6 11.6 129 224-365 96-234 (314)
232 PF10672 Methyltrans_SAM: S-ad 96.2 0.023 4.9E-07 55.6 8.6 104 231-339 121-239 (286)
233 PF08123 DOT1: Histone methyla 96.0 0.0057 1.2E-07 57.0 3.5 103 230-341 39-161 (205)
234 KOG4589 Cell division protein 96.0 0.053 1.1E-06 49.7 9.4 145 232-390 68-230 (232)
235 TIGR02987 met_A_Alw26 type II 96.0 0.039 8.4E-07 58.4 9.9 18 239-256 34-51 (524)
236 KOG3420 Predicted RNA methylas 95.9 0.032 6.9E-07 49.2 7.4 71 233-309 48-125 (185)
237 PF09445 Methyltransf_15: RNA 95.9 0.014 3.1E-07 52.4 5.3 66 239-306 2-77 (163)
238 COG1889 NOP1 Fibrillarin-like 95.9 0.26 5.7E-06 45.8 13.5 131 231-370 74-218 (231)
239 KOG1709 Guanidinoacetate methy 95.7 0.078 1.7E-06 49.7 9.6 106 232-344 100-212 (271)
240 COG0742 N6-adenine-specific me 95.7 0.075 1.6E-06 48.8 9.3 103 233-340 43-156 (187)
241 PRK00050 16S rRNA m(4)C1402 me 95.7 0.024 5.2E-07 55.7 6.4 67 240-308 23-100 (296)
242 PF13578 Methyltransf_24: Meth 95.6 0.006 1.3E-07 50.0 1.5 95 241-339 1-106 (106)
243 TIGR00308 TRM1 tRNA(guanine-26 95.5 0.031 6.8E-07 56.8 6.7 90 240-338 48-147 (374)
244 PF03492 Methyltransf_7: SAM d 95.5 0.37 8E-06 48.2 14.2 118 223-341 3-186 (334)
245 cd00315 Cyt_C5_DNA_methylase C 95.2 0.7 1.5E-05 44.8 15.0 142 240-384 3-162 (275)
246 PF06859 Bin3: Bicoid-interact 95.2 0.013 2.9E-07 49.0 2.3 68 298-365 1-91 (110)
247 COG3897 Predicted methyltransf 95.0 0.046 9.9E-07 50.4 5.5 88 239-336 82-176 (218)
248 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.0 0.15 3.3E-06 49.8 9.5 135 221-361 73-243 (283)
249 PF13679 Methyltransf_32: Meth 94.9 0.083 1.8E-06 45.9 6.7 34 235-268 24-63 (141)
250 COG0116 Predicted N6-adenine-s 94.9 0.28 6.1E-06 49.7 11.2 97 240-338 195-344 (381)
251 KOG3201 Uncharacterized conser 94.8 0.056 1.2E-06 48.5 5.3 64 295-363 100-163 (201)
252 KOG3115 Methyltransferase-like 94.8 0.054 1.2E-06 50.3 5.3 34 241-274 65-98 (249)
253 KOG2730 Methylase [General fun 94.7 0.055 1.2E-06 50.8 5.1 91 239-334 97-198 (263)
254 PF05971 Methyltransf_10: Prot 94.6 0.4 8.7E-06 47.2 11.2 87 224-310 88-189 (299)
255 PF04989 CmcI: Cephalosporin h 94.4 0.11 2.5E-06 48.3 6.6 96 239-339 35-148 (206)
256 COG4076 Predicted RNA methylas 94.2 0.096 2.1E-06 48.1 5.6 89 241-335 37-132 (252)
257 PLN02668 indole-3-acetate carb 93.8 0.26 5.7E-06 50.2 8.4 50 289-339 153-238 (386)
258 KOG2187 tRNA uracil-5-methyltr 93.7 0.057 1.2E-06 56.3 3.5 66 224-292 374-443 (534)
259 PF10354 DUF2431: Domain of un 93.6 1.5 3.2E-05 39.5 12.1 121 243-365 3-151 (166)
260 COG1064 AdhP Zn-dependent alco 93.4 0.34 7.3E-06 48.6 8.2 96 230-340 163-261 (339)
261 TIGR01444 fkbM_fam methyltrans 93.1 0.11 2.3E-06 44.5 3.8 33 240-274 2-36 (143)
262 COG0270 Dcm Site-specific DNA 92.9 1 2.2E-05 44.9 10.9 143 239-384 5-166 (328)
263 COG5459 Predicted rRNA methyla 92.7 0.17 3.7E-06 50.6 4.9 115 224-341 101-228 (484)
264 PF07757 AdoMet_MTase: Predict 92.5 0.18 3.9E-06 42.2 4.1 25 241-265 63-87 (112)
265 KOG2793 Putative N2,N2-dimethy 92.5 1.1 2.4E-05 43.0 10.1 100 239-341 89-202 (248)
266 PRK11524 putative methyltransf 92.4 0.5 1.1E-05 46.0 7.9 82 283-369 10-106 (284)
267 PF03059 NAS: Nicotianamine sy 91.7 1.6 3.4E-05 42.6 10.3 99 238-338 122-230 (276)
268 PF06962 rRNA_methylase: Putat 91.6 1.3 2.8E-05 38.8 8.7 89 282-370 28-129 (140)
269 PF00145 DNA_methylase: C-5 cy 91.6 1.9 4E-05 41.8 11.0 142 239-385 2-162 (335)
270 COG4262 Predicted spermidine s 91.5 1.2 2.6E-05 45.0 9.2 130 236-368 289-438 (508)
271 TIGR00675 dcm DNA-methyltransf 90.0 7 0.00015 38.7 13.4 142 240-384 1-159 (315)
272 cd08254 hydroxyacyl_CoA_DH 6-h 90.0 1.9 4.2E-05 41.7 9.3 93 231-338 163-263 (338)
273 COG2384 Predicted SAM-dependen 89.9 17 0.00037 34.3 14.9 145 224-387 6-158 (226)
274 KOG2198 tRNA cytosine-5-methyl 89.9 1.6 3.5E-05 44.0 8.6 133 229-367 151-324 (375)
275 KOG1122 tRNA and rRNA cytosine 89.5 4.1 8.8E-05 41.9 11.2 123 228-357 236-390 (460)
276 PF03269 DUF268: Caenorhabditi 89.4 0.32 6.9E-06 43.6 3.0 48 295-342 60-115 (177)
277 KOG1596 Fibrillarin and relate 87.2 3.9 8.6E-05 39.2 8.8 145 231-388 154-313 (317)
278 PRK01747 mnmC bifunctional tRN 87.0 2.3 4.9E-05 46.4 8.3 72 284-363 151-224 (662)
279 PRK10742 putative methyltransf 86.9 7.4 0.00016 37.4 10.7 84 224-310 77-176 (250)
280 cd08283 FDH_like_1 Glutathione 86.9 3.5 7.7E-05 41.5 9.2 105 229-338 180-306 (386)
281 KOG1099 SAM-dependent methyltr 86.0 1 2.3E-05 42.7 4.3 102 237-345 42-170 (294)
282 KOG2539 Mitochondrial/chloropl 85.7 1.7 3.6E-05 45.2 5.9 106 232-339 196-316 (491)
283 KOG0822 Protein kinase inhibit 85.5 2.9 6.3E-05 44.1 7.6 102 237-339 368-479 (649)
284 TIGR00027 mthyl_TIGR00027 meth 84.0 20 0.00044 34.5 12.4 101 237-340 82-199 (260)
285 PRK09424 pntA NAD(P) transhydr 83.6 7.9 0.00017 41.1 10.1 93 240-338 168-285 (509)
286 COG0275 Predicted S-adenosylme 83.1 18 0.00038 35.8 11.5 30 317-346 223-252 (314)
287 COG4301 Uncharacterized conser 83.0 21 0.00047 34.5 11.6 96 241-338 83-193 (321)
288 KOG2671 Putative RNA methylase 82.9 2.7 5.8E-05 42.2 5.8 83 221-306 196-292 (421)
289 PF04445 SAM_MT: Putative SAM- 82.8 1.8 3.9E-05 41.2 4.5 83 224-310 64-163 (234)
290 COG3510 CmcI Cephalosporin hyd 81.1 8.5 0.00018 35.8 7.9 99 237-339 70-181 (237)
291 PRK10458 DNA cytosine methylas 81.0 65 0.0014 33.9 15.6 121 240-362 91-255 (467)
292 PRK09880 L-idonate 5-dehydroge 80.9 6.4 0.00014 38.8 8.0 88 241-339 174-267 (343)
293 PF05430 Methyltransf_30: S-ad 80.7 1 2.2E-05 38.6 1.9 75 283-365 34-110 (124)
294 COG0286 HsdM Type I restrictio 80.7 46 0.00099 35.1 14.5 112 221-337 174-325 (489)
295 PF00107 ADH_zinc_N: Zinc-bind 80.1 4 8.6E-05 33.9 5.3 85 246-341 1-92 (130)
296 PF01861 DUF43: Protein of unk 78.7 52 0.0011 31.5 12.8 120 241-366 49-178 (243)
297 PF01555 N6_N4_Mtase: DNA meth 78.1 6.3 0.00014 35.8 6.5 52 317-370 35-87 (231)
298 cd05188 MDR Medium chain reduc 78.0 11 0.00023 34.8 8.1 94 232-339 133-233 (271)
299 KOG2920 Predicted methyltransf 76.9 2.2 4.7E-05 41.6 3.0 96 238-338 118-234 (282)
300 TIGR00006 S-adenosyl-methyltra 76.2 9.1 0.0002 37.9 7.2 67 240-308 24-102 (305)
301 TIGR02822 adh_fam_2 zinc-bindi 76.2 16 0.00035 35.9 9.2 92 230-339 162-255 (329)
302 cd08230 glucose_DH Glucose deh 76.0 14 0.00031 36.5 8.7 94 233-339 172-270 (355)
303 PF07091 FmrO: Ribosomal RNA m 75.9 6.8 0.00015 37.7 6.0 85 221-310 92-183 (251)
304 cd08232 idonate-5-DH L-idonate 75.2 16 0.00035 35.5 8.8 87 241-338 170-262 (339)
305 TIGR03451 mycoS_dep_FDH mycoth 74.9 19 0.0004 35.7 9.3 95 231-339 174-277 (358)
306 cd08234 threonine_DH_like L-th 72.9 15 0.00033 35.5 8.0 95 229-338 155-257 (334)
307 PF11899 DUF3419: Protein of u 71.8 6 0.00013 40.4 4.9 59 282-341 277-337 (380)
308 cd08281 liver_ADH_like1 Zinc-d 71.6 20 0.00044 35.7 8.7 95 231-339 189-291 (371)
309 COG1063 Tdh Threonine dehydrog 71.3 30 0.00065 34.6 9.8 94 239-343 171-274 (350)
310 COG1255 Uncharacterized protei 70.7 34 0.00074 29.1 8.2 89 234-341 14-105 (129)
311 cd00401 AdoHcyase S-adenosyl-L 70.6 18 0.00039 37.4 8.1 88 233-340 201-291 (413)
312 PF02254 TrkA_N: TrkA-N domain 70.4 40 0.00086 27.3 8.8 102 245-362 4-113 (116)
313 cd08294 leukotriene_B4_DH_like 69.7 23 0.0005 34.1 8.4 94 229-337 139-240 (329)
314 TIGR02825 B4_12hDH leukotriene 69.3 35 0.00075 33.1 9.6 95 228-338 133-237 (325)
315 cd08245 CAD Cinnamyl alcohol d 69.2 37 0.00081 32.7 9.8 94 230-338 159-256 (330)
316 cd08261 Zn_ADH7 Alcohol dehydr 67.3 36 0.00077 33.1 9.2 95 229-337 155-257 (337)
317 PF02153 PDH: Prephenate dehyd 67.2 63 0.0014 30.8 10.7 73 250-334 1-75 (258)
318 TIGR01202 bchC 2-desacetyl-2-h 67.0 24 0.00052 34.3 7.9 82 241-339 149-232 (308)
319 PLN02586 probable cinnamyl alc 66.8 34 0.00074 34.1 9.1 86 241-338 188-278 (360)
320 cd05285 sorbitol_DH Sorbitol d 66.2 34 0.00074 33.4 8.9 95 229-337 158-264 (343)
321 PF14740 DUF4471: Domain of un 65.8 8.8 0.00019 37.7 4.5 61 295-363 219-286 (289)
322 KOG1562 Spermidine synthase [A 64.6 8.1 0.00018 38.1 3.9 102 236-338 121-236 (337)
323 cd08293 PTGR2 Prostaglandin re 64.4 39 0.00084 32.9 8.9 85 241-337 159-253 (345)
324 COG0287 TyrA Prephenate dehydr 64.4 37 0.00081 33.1 8.5 87 240-334 6-94 (279)
325 KOG4058 Uncharacterized conser 63.8 26 0.00056 31.3 6.5 111 221-341 57-175 (199)
326 PRK00050 16S rRNA m(4)C1402 me 63.8 12 0.00025 37.0 5.0 32 315-346 213-244 (296)
327 cd08239 THR_DH_like L-threonin 63.5 37 0.00079 33.1 8.5 96 230-339 160-263 (339)
328 PF14314 Methyltrans_Mon: Viru 63.4 1.3E+02 0.0029 33.1 13.1 90 296-390 413-503 (675)
329 KOG1501 Arginine N-methyltrans 63.2 13 0.00029 38.6 5.2 25 239-263 69-94 (636)
330 TIGR03366 HpnZ_proposed putati 62.8 34 0.00073 32.6 7.9 92 233-340 120-220 (280)
331 cd05278 FDH_like Formaldehyde 62.6 38 0.00083 32.9 8.5 93 231-337 165-266 (347)
332 TIGR00872 gnd_rel 6-phosphoglu 62.2 48 0.001 32.3 9.0 111 241-363 4-116 (298)
333 PLN03154 putative allyl alcoho 62.0 44 0.00096 33.1 8.9 94 230-338 155-258 (348)
334 cd08255 2-desacetyl-2-hydroxye 61.7 65 0.0014 30.2 9.6 94 230-338 94-190 (277)
335 TIGR00561 pntA NAD(P) transhyd 61.6 30 0.00064 36.8 7.8 91 239-335 166-281 (511)
336 cd08231 MDR_TM0436_like Hypoth 60.7 74 0.0016 31.3 10.2 87 241-338 182-280 (361)
337 PF01555 N6_N4_Mtase: DNA meth 60.7 14 0.00029 33.5 4.6 43 222-267 178-222 (231)
338 cd08237 ribitol-5-phosphate_DH 59.8 34 0.00074 33.7 7.6 92 232-339 162-257 (341)
339 PLN02740 Alcohol dehydrogenase 59.5 50 0.0011 33.1 8.8 97 230-340 195-302 (381)
340 PRK11524 putative methyltransf 59.1 19 0.00041 35.0 5.5 53 222-279 195-249 (284)
341 cd08298 CAD2 Cinnamyl alcohol 58.6 89 0.0019 30.1 10.2 93 228-338 162-256 (329)
342 cd08295 double_bond_reductase_ 57.8 56 0.0012 31.8 8.7 95 229-338 147-251 (338)
343 PF03446 NAD_binding_2: NAD bi 57.7 51 0.0011 29.0 7.6 113 241-367 5-121 (163)
344 COG0604 Qor NADPH:quinone redu 57.6 56 0.0012 32.4 8.7 98 228-340 137-243 (326)
345 COG0686 Ald Alanine dehydrogen 57.4 24 0.00052 35.3 5.7 89 241-334 172-264 (371)
346 KOG2651 rRNA adenine N-6-methy 57.3 26 0.00056 35.9 6.0 32 235-266 152-184 (476)
347 COG3129 Predicted SAM-dependen 57.1 28 0.00061 33.4 5.9 87 223-310 62-165 (292)
348 PHA01634 hypothetical protein 56.9 35 0.00077 29.7 6.0 29 238-268 30-59 (156)
349 PF01795 Methyltransf_5: MraW 56.6 7.9 0.00017 38.4 2.4 39 315-356 218-256 (310)
350 PLN02827 Alcohol dehydrogenase 56.4 67 0.0014 32.3 9.1 94 230-338 190-295 (378)
351 cd01842 SGNH_hydrolase_like_5 56.2 53 0.0012 30.1 7.4 44 295-338 47-99 (183)
352 PTZ00357 methyltransferase; Pr 56.1 37 0.00081 37.5 7.3 94 239-333 703-830 (1072)
353 COG2933 Predicted SAM-dependen 55.9 36 0.00078 33.3 6.5 70 232-307 210-279 (358)
354 PRK07417 arogenate dehydrogena 55.1 60 0.0013 31.2 8.2 82 241-334 4-87 (279)
355 PRK10309 galactitol-1-phosphat 55.0 58 0.0013 31.9 8.3 95 232-340 159-262 (347)
356 PRK15001 SAM-dependent 23S rib 54.7 1.4E+02 0.003 30.5 11.0 105 222-340 33-144 (378)
357 PRK13699 putative methylase; P 52.9 27 0.00059 32.9 5.3 49 223-276 151-201 (227)
358 PF03514 GRAS: GRAS domain fam 52.1 1.6E+02 0.0034 29.9 11.0 99 239-338 113-244 (374)
359 cd08236 sugar_DH NAD(P)-depend 50.6 95 0.0021 30.1 9.0 94 231-338 157-258 (343)
360 cd08242 MDR_like Medium chain 50.4 1.4E+02 0.0031 28.5 10.1 90 231-337 153-244 (319)
361 cd08285 NADP_ADH NADP(H)-depen 50.1 91 0.002 30.5 8.8 96 231-340 164-268 (351)
362 TIGR02818 adh_III_F_hyde S-(hy 48.4 1.2E+02 0.0027 30.1 9.6 96 231-340 183-289 (368)
363 TIGR00006 S-adenosyl-methyltra 47.9 23 0.00049 35.1 4.0 32 315-346 217-248 (305)
364 cd08277 liver_alcohol_DH_like 47.5 1.2E+02 0.0027 29.9 9.4 95 231-339 182-287 (365)
365 cd05281 TDH Threonine dehydrog 47.0 1E+02 0.0022 30.0 8.6 86 241-337 168-261 (341)
366 cd08263 Zn_ADH10 Alcohol dehyd 46.9 1.1E+02 0.0023 30.3 8.8 92 232-337 186-286 (367)
367 KOG1197 Predicted quinone oxid 46.3 1.3E+02 0.0029 29.4 8.6 101 224-337 137-244 (336)
368 PLN02494 adenosylhomocysteinas 45.7 1E+02 0.0022 32.6 8.5 87 240-342 257-345 (477)
369 KOG0024 Sorbitol dehydrogenase 45.5 1.7E+02 0.0036 29.6 9.5 96 230-340 166-275 (354)
370 TIGR00692 tdh L-threonine 3-de 45.1 1.2E+02 0.0026 29.4 8.8 86 241-338 166-261 (340)
371 cd08279 Zn_ADH_class_III Class 44.5 1.2E+02 0.0026 29.9 8.8 93 231-337 180-281 (363)
372 PF03721 UDPG_MGDP_dh_N: UDP-g 44.2 42 0.00092 30.5 5.0 113 242-358 5-139 (185)
373 cd08301 alcohol_DH_plants Plan 44.1 1.2E+02 0.0026 30.0 8.7 97 230-340 184-291 (369)
374 cd08233 butanediol_DH_like (2R 43.2 1.5E+02 0.0031 29.0 9.0 95 230-339 169-273 (351)
375 cd08258 Zn_ADH4 Alcohol dehydr 43.1 2.1E+02 0.0045 27.5 10.0 98 231-341 162-267 (306)
376 PF11253 DUF3052: Protein of u 42.8 1.2E+02 0.0026 26.2 7.0 67 295-365 42-110 (127)
377 TIGR00936 ahcY adenosylhomocys 42.6 1.7E+02 0.0038 30.1 9.6 89 233-341 194-285 (406)
378 cd08278 benzyl_alcohol_DH Benz 42.5 1.5E+02 0.0033 29.3 9.1 94 231-338 184-285 (365)
379 cd08300 alcohol_DH_class_III c 42.1 1.6E+02 0.0034 29.2 9.2 97 230-340 183-290 (368)
380 PF12692 Methyltransf_17: S-ad 41.8 38 0.00081 30.2 4.0 98 235-338 30-134 (160)
381 PRK12490 6-phosphogluconate de 41.4 2.1E+02 0.0045 27.8 9.7 111 241-362 4-116 (299)
382 PF10237 N6-adenineMlase: Prob 40.5 2.7E+02 0.0059 24.9 13.2 129 221-368 12-146 (162)
383 cd08241 QOR1 Quinone oxidoredu 40.4 1.8E+02 0.0038 27.2 8.9 93 231-338 137-238 (323)
384 PF01795 Methyltransf_5: MraW 39.4 49 0.0011 32.9 4.8 70 231-305 18-100 (310)
385 PF02005 TRM: N2,N2-dimethylgu 39.2 51 0.0011 33.6 5.1 91 239-338 52-154 (377)
386 PRK07502 cyclohexadienyl dehyd 39.2 1.5E+02 0.0032 28.8 8.3 86 239-335 8-97 (307)
387 TIGR02819 fdhA_non_GSH formald 38.8 1.8E+02 0.0038 29.5 9.0 105 231-340 183-301 (393)
388 KOG1771 GPI-alpha-mannosyltran 38.5 31 0.00068 35.4 3.3 47 102-162 360-406 (464)
389 TIGR03201 dearomat_had 6-hydro 38.5 51 0.0011 32.5 4.9 95 231-340 164-274 (349)
390 PF11312 DUF3115: Protein of u 38.1 34 0.00074 34.0 3.5 58 282-339 177-243 (315)
391 PLN02178 cinnamyl-alcohol dehy 37.9 1.1E+02 0.0024 30.7 7.4 86 241-338 183-273 (375)
392 PRK11559 garR tartronate semia 37.6 2.5E+02 0.0054 26.9 9.6 107 241-361 6-117 (296)
393 PRK05225 ketol-acid reductoiso 36.8 45 0.00099 35.0 4.3 92 233-339 35-132 (487)
394 cd08243 quinone_oxidoreductase 36.7 2.1E+02 0.0046 26.8 8.9 90 231-337 140-237 (320)
395 PRK03659 glutathione-regulated 36.7 1.8E+02 0.0039 31.5 9.1 85 245-338 406-498 (601)
396 cd08267 MDR1 Medium chain dehy 36.6 2.8E+02 0.0061 26.0 9.7 93 231-337 141-239 (319)
397 PRK09599 6-phosphogluconate de 36.2 3.2E+02 0.0069 26.5 10.1 112 241-363 4-117 (301)
398 PF07101 DUF1363: Protein of u 35.6 17 0.00038 29.7 0.9 11 241-251 7-17 (124)
399 KOG2912 Predicted DNA methylas 35.3 79 0.0017 31.8 5.5 87 221-308 85-188 (419)
400 cd08296 CAD_like Cinnamyl alco 35.2 2.3E+02 0.005 27.4 9.0 93 230-337 160-258 (333)
401 KOG0023 Alcohol dehydrogenase, 34.9 2.7E+02 0.0058 28.1 9.1 97 231-340 179-281 (360)
402 PF02636 Methyltransf_28: Puta 34.8 61 0.0013 30.7 4.7 25 317-341 173-197 (252)
403 PRK05708 2-dehydropantoate 2-r 34.8 2.9E+02 0.0062 26.9 9.5 89 240-337 5-103 (305)
404 PRK02261 methylaspartate mutas 34.7 3E+02 0.0065 23.7 10.5 94 250-362 23-116 (137)
405 cd08240 6_hydroxyhexanoate_dh_ 34.7 2.6E+02 0.0056 27.2 9.3 86 241-338 180-274 (350)
406 PF02558 ApbA: Ketopantoate re 33.9 82 0.0018 26.8 5.0 87 241-337 2-100 (151)
407 TIGR01692 HIBADH 3-hydroxyisob 33.6 2.7E+02 0.0058 26.8 9.0 100 250-363 11-113 (288)
408 PRK09489 rsmC 16S ribosomal RN 33.5 5E+02 0.011 26.0 11.8 96 233-341 19-115 (342)
409 cd08260 Zn_ADH6 Alcohol dehydr 33.5 2.1E+02 0.0045 27.7 8.4 93 231-337 163-263 (345)
410 cd05286 QOR2 Quinone oxidoredu 32.9 2.9E+02 0.0062 25.7 9.0 93 230-337 133-234 (320)
411 COG3315 O-Methyltransferase in 32.6 3.7E+02 0.0081 26.4 9.9 98 237-338 93-209 (297)
412 PRK05476 S-adenosyl-L-homocyst 32.5 1.4E+02 0.0031 30.9 7.2 87 240-343 215-304 (425)
413 PLN02514 cinnamyl-alcohol dehy 32.4 2.1E+02 0.0045 28.3 8.2 86 241-338 185-275 (357)
414 PRK06545 prephenate dehydrogen 32.2 2.9E+02 0.0062 27.7 9.2 82 241-331 4-88 (359)
415 PF03686 UPF0146: Uncharacteri 32.1 1.1E+02 0.0024 26.4 5.2 91 232-341 12-105 (127)
416 cd08235 iditol_2_DH_like L-idi 32.0 2.8E+02 0.006 26.7 9.0 94 230-338 162-265 (343)
417 KOG1209 1-Acyl dihydroxyaceton 31.7 1.7E+02 0.0037 28.0 6.7 67 238-305 8-88 (289)
418 cd08286 FDH_like_ADH2 formalde 31.4 3.4E+02 0.0074 26.2 9.5 92 231-337 164-265 (345)
419 COG0863 DNA modification methy 31.0 1.3E+02 0.0028 28.7 6.4 51 317-371 78-128 (302)
420 cd05289 MDR_like_2 alcohol deh 31.0 3.9E+02 0.0085 24.7 9.6 91 231-337 142-237 (309)
421 PRK03562 glutathione-regulated 29.7 2.8E+02 0.006 30.3 9.1 89 240-337 403-497 (621)
422 cd08274 MDR9 Medium chain dehy 29.6 3.6E+02 0.0078 26.0 9.3 90 231-337 175-272 (350)
423 PF06557 DUF1122: Protein of u 29.5 68 0.0015 28.9 3.6 45 318-363 66-120 (170)
424 PF07991 IlvN: Acetohydroxy ac 29.0 2E+02 0.0043 26.0 6.5 86 241-339 8-96 (165)
425 KOG1298 Squalene monooxygenase 29.0 1.6E+02 0.0036 30.5 6.6 72 240-311 48-147 (509)
426 PRK05396 tdh L-threonine 3-deh 29.0 3.1E+02 0.0068 26.5 8.8 87 241-339 168-264 (341)
427 cd05279 Zn_ADH1 Liver alcohol 28.8 2.5E+02 0.0055 27.7 8.2 94 231-338 181-285 (365)
428 PF12242 Eno-Rase_NADH_b: NAD( 28.8 2.1E+02 0.0047 22.5 5.8 30 237-266 39-72 (78)
429 PF01558 POR: Pyruvate ferredo 28.4 81 0.0017 27.9 4.1 73 250-340 12-88 (173)
430 KOG1253 tRNA methyltransferase 28.1 43 0.00092 35.4 2.4 91 241-338 114-216 (525)
431 COG0373 HemA Glutamyl-tRNA red 27.6 2.3E+02 0.005 29.4 7.6 82 239-323 180-264 (414)
432 cd08292 ETR_like_2 2-enoyl thi 27.4 3.6E+02 0.0079 25.5 8.8 92 230-337 136-237 (324)
433 cd08265 Zn_ADH3 Alcohol dehydr 26.7 2.9E+02 0.0062 27.6 8.2 92 231-337 201-306 (384)
434 COG1109 {ManB} Phosphomannomut 26.5 7.5E+02 0.016 25.7 15.0 136 221-370 159-315 (464)
435 PRK06274 indolepyruvate oxidor 26.5 2.2E+02 0.0048 25.7 6.7 32 296-338 65-96 (197)
436 PRK06522 2-dehydropantoate 2-r 26.4 3.6E+02 0.0078 25.6 8.6 87 240-336 3-98 (304)
437 PF05206 TRM13: Methyltransfer 26.2 95 0.0021 30.0 4.4 18 239-256 21-38 (259)
438 PLN02350 phosphogluconate dehy 26.2 3.1E+02 0.0068 29.1 8.5 114 242-364 11-131 (493)
439 PRK10083 putative oxidoreducta 25.7 3.2E+02 0.007 26.2 8.2 93 231-338 158-259 (339)
440 PF02879 PGM_PMM_II: Phosphogl 25.7 2.2E+02 0.0048 22.7 5.9 29 235-263 20-50 (104)
441 PF06897 DUF1269: Protein of u 25.6 2E+02 0.0043 23.7 5.6 47 319-368 43-89 (102)
442 PRK06242 flavodoxin; Provision 25.3 3.2E+02 0.0069 23.1 7.2 66 297-364 42-108 (150)
443 PRK06249 2-dehydropantoate 2-r 25.3 3.9E+02 0.0084 26.0 8.6 86 240-336 8-104 (313)
444 KOG2918 Carboxymethyl transfer 24.9 2.7E+02 0.0058 27.9 7.1 46 221-268 74-121 (335)
445 cd08244 MDR_enoyl_red Possible 24.8 4.9E+02 0.011 24.6 9.2 91 231-337 140-240 (324)
446 cd08291 ETR_like_1 2-enoyl thi 24.8 2.3E+02 0.0049 27.3 6.9 81 246-338 155-242 (324)
447 cd08266 Zn_ADH_like1 Alcohol d 24.5 3.9E+02 0.0085 25.2 8.4 92 231-338 164-265 (342)
448 PRK07066 3-hydroxybutyryl-CoA 24.3 7.1E+02 0.015 24.7 10.4 33 236-268 6-40 (321)
449 PF05711 TylF: Macrocin-O-meth 24.0 68 0.0015 30.8 2.9 72 282-360 159-232 (248)
450 KOG1269 SAM-dependent methyltr 23.8 1.9E+02 0.0042 29.4 6.2 61 295-361 276-336 (364)
451 COG0541 Ffh Signal recognition 23.7 3.8E+02 0.0081 28.1 8.2 102 238-340 101-223 (451)
452 PF00670 AdoHcyase_NAD: S-aden 23.6 4.6E+02 0.01 23.5 7.9 101 241-362 27-129 (162)
453 cd05802 GlmM GlmM is a bacteri 23.4 8.1E+02 0.018 25.1 14.5 45 221-265 151-200 (434)
454 cd08297 CAD3 Cinnamyl alcohol 23.3 4.4E+02 0.0095 25.3 8.6 93 230-337 162-264 (341)
455 COG1748 LYS9 Saccharopine dehy 23.2 3.6E+02 0.0078 27.8 8.0 67 240-308 4-78 (389)
456 cd08269 Zn_ADH9 Alcohol dehydr 23.0 6.3E+02 0.014 23.6 9.7 94 231-338 127-229 (312)
457 cd05283 CAD1 Cinnamyl alcohol 22.8 4.5E+02 0.0098 25.4 8.6 87 241-338 174-263 (337)
458 COG1893 ApbA Ketopantoate redu 22.6 3.9E+02 0.0084 26.3 8.0 88 240-337 3-100 (307)
459 cd08268 MDR2 Medium chain dehy 22.6 5E+02 0.011 24.2 8.7 86 241-338 149-243 (328)
460 KOG3924 Putative protein methy 22.6 1.4E+02 0.003 30.9 4.8 106 230-342 189-312 (419)
461 cd08238 sorbose_phosphate_red 22.4 5E+02 0.011 26.2 9.1 92 231-336 173-286 (410)
462 TIGR02437 FadB fatty oxidation 22.3 1.1E+03 0.024 26.2 12.7 92 235-334 311-424 (714)
463 cd05282 ETR_like 2-enoyl thioe 22.3 4.6E+02 0.0099 24.7 8.4 90 232-337 137-236 (323)
464 PF02086 MethyltransfD12: D12 22.2 78 0.0017 29.6 2.9 44 225-268 9-52 (260)
465 TIGR02817 adh_fam_1 zinc-bindi 22.1 5.4E+02 0.012 24.5 8.9 84 241-336 153-245 (336)
466 TIGR00873 gnd 6-phosphoglucona 22.0 4.6E+02 0.0099 27.6 8.8 111 243-362 5-120 (467)
467 PRK07530 3-hydroxybutyryl-CoA 21.9 6.7E+02 0.015 24.0 9.5 87 239-335 6-116 (292)
468 COG2910 Putative NADH-flavin r 21.6 2.3E+02 0.0049 26.4 5.5 60 245-309 7-73 (211)
469 COG0673 MviM Predicted dehydro 21.6 4.5E+02 0.0098 25.3 8.3 63 241-305 7-74 (342)
470 PF04072 LCM: Leucine carboxyl 21.5 4.8E+02 0.01 23.2 7.9 32 237-268 79-110 (183)
471 PRK05808 3-hydroxybutyryl-CoA 21.5 5.4E+02 0.012 24.5 8.7 85 240-334 6-114 (282)
472 PRK08507 prephenate dehydrogen 21.5 3.5E+02 0.0077 25.7 7.4 80 241-334 4-87 (275)
473 COG0569 TrkA K+ transport syst 21.4 2.7E+02 0.0058 26.0 6.3 63 241-305 4-73 (225)
474 COG2084 MmsB 3-hydroxyisobutyr 21.3 4.9E+02 0.011 25.6 8.3 101 250-364 15-119 (286)
475 PRK07819 3-hydroxybutyryl-CoA 21.3 5.5E+02 0.012 24.8 8.7 88 238-335 6-118 (286)
476 PTZ00075 Adenosylhomocysteinas 20.9 2.3E+02 0.005 30.0 6.2 85 239-340 256-343 (476)
477 COG1867 TRM1 N2,N2-dimethylgua 20.8 3.3E+02 0.0072 27.9 7.0 93 237-338 53-154 (380)
478 COG0773 MurC UDP-N-acetylmuram 20.8 1.1E+02 0.0025 32.0 3.9 59 244-308 17-76 (459)
479 TIGR01761 thiaz-red thiazoliny 20.7 4.9E+02 0.011 26.2 8.3 62 240-304 6-70 (343)
480 PF01206 TusA: Sulfurtransfera 20.3 3.6E+02 0.0077 19.8 6.5 43 320-365 16-58 (70)
481 cd08270 MDR4 Medium chain dehy 20.3 5.7E+02 0.012 23.8 8.6 83 241-338 137-222 (305)
482 TIGR02764 spore_ybaN_pdaB poly 20.0 2.1E+02 0.0047 25.5 5.2 46 318-363 139-186 (191)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=6.3e-40 Score=330.70 Aligned_cols=242 Identities=33% Similarity=0.528 Sum_probs=199.3
Q ss_pred cccccCCCCChHH-HHH-------HHHHcCCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccccccCcchh
Q 047630 115 SYKVNASCPDDEL-LAQ-------KLLLKGCEP-LPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCL 185 (392)
Q Consensus 115 ~y~~~~~Cp~~~~-l~~-------~~~~~~C~~-~~~r~c~~~~p~~y~~p~p~p~s~~~~p~d~~~~W~~y~~~~~~~L 185 (392)
+|+ ||-|... +.. ..++||||| .++.+|++++|+||+.|+|||+|+ +++|+ +|++|++|
T Consensus 1 dy~---PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SR-------d~iW~--~Nvph~~L 68 (506)
T PF03141_consen 1 DYI---PCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSR-------DYIWY--ANVPHTKL 68 (506)
T ss_pred CCc---CCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCccc-------ceeee--cccCchHH
Confidence 477 8999977 333 357999998 557799999999999999999999 99995 59999999
Q ss_pred hhccccCCCCCCCCcccccccccccceeccCC----CCcHHHHHHHHHhhC----CCCcccEEEEEcCCcchHHHHHHHc
Q 047630 186 INRKHTQKGFDDCKDCFDLQGVEKIRWTQKKG----NGGLDFSIDEVLATK----KPGTIRIGLDIGGGVATFAVRMMER 257 (392)
Q Consensus 186 ~~~~~~~~~~~~c~~cFd~~~~e~~~w~~~~~----~~~~~~lI~~ll~l~----~~~~ir~VLDIGCGtG~~a~~La~~ 257 (392)
+.+|..| +|+..++++|.|+++ ++|++.||+.+.++. .++.||++||+|||+|+|+++|.++
T Consensus 69 ~~~K~~q----------nWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 69 AEEKADQ----------NWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER 138 (506)
T ss_pred hhhcccc----------cceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC
Confidence 9999999 898899999999987 368889988876654 5589999999999999999999999
Q ss_pred CCEEEEEecCCC-chhHHHHHhcCCccEEEec--cCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEE
Q 047630 258 NITIVTTSMNLN-GPFNNFIASRGVVPLYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 258 g~~vvg~~iD~~-a~~~~~aa~rg~i~~~~~d--~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~l 334 (392)
++.++.+..... ....+++.+||+ +.+.+. .++|||++++||+|||+.++..|.+.+. .+|.|++|+|||||+|
T Consensus 139 ~V~t~s~a~~d~~~~qvqfaleRGv-pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g--~~l~evdRvLRpGGyf 215 (506)
T PF03141_consen 139 NVTTMSFAPNDEHEAQVQFALERGV-PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG--FLLFEVDRVLRPGGYF 215 (506)
T ss_pred CceEEEcccccCCchhhhhhhhcCc-chhhhhhccccccCCccchhhhhcccccccchhccc--ceeehhhhhhccCceE
Confidence 999877665432 245568899994 666554 7899999999999999999999998887 5999999999999999
Q ss_pred EEEeec---ccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEcCCCCC
Q 047630 335 WLDHFF---CVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKPFLDA 392 (392)
Q Consensus 335 ii~~~~---~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~Kp~~~~ 392 (392)
|++... ...++..+++.++-+- .+.+||+.+.+.+ + +||||||.+++
T Consensus 216 v~S~ppv~~r~~~~~~~~~~~~~~l--~~~lCW~~va~~~------~---~aIwqKp~~~~ 265 (506)
T PF03141_consen 216 VLSGPPVYQRTDEDLEEEWNAMEDL--AKSLCWKKVAEKG------D---TAIWQKPTNNS 265 (506)
T ss_pred EecCCcccccchHHHHHHHHHHHHH--HHHHHHHHheeeC------C---EEEEeccCCch
Confidence 999753 3344555556655544 3679999776544 3 69999998763
No 2
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.85 E-value=4.1e-21 Score=185.45 Aligned_cols=170 Identities=18% Similarity=0.259 Sum_probs=122.2
Q ss_pred CCChHH-HHHHHHHcCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccccccCcchhhhccccCCCCCCCCc
Q 047630 122 CPDDEL-LAQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDCKD 200 (392)
Q Consensus 122 Cp~~~~-l~~~~~~~~C~~~~~r~c~~~~p~~y~~p~p~p~s~~~~p~d~~~~W~~y~~~~~~~L~~~~~~~~~~~~c~~ 200 (392)
||.|.. |......+.|+ ++||||.+++||++++|.+.+..+.|+|+.
T Consensus 5 CP~C~~~l~~~~~~~~C~---~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~----------------------------- 52 (272)
T PRK11088 5 CPLCHQPLTLEENSWICP---QNHQFDCAKEGYVNLLPVQHKRSKDPGDNK----------------------------- 52 (272)
T ss_pred CCCCCcchhcCCCEEEcC---CCCCCccccCceEEeccccccCCCCCCcCH-----------------------------
Confidence 999988 77677889997 899999999999999998888888888765
Q ss_pred ccccccccccceeccCCCCcHHHHH-HHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC-----CEEEEEecCCCchhHH
Q 047630 201 CFDLQGVEKIRWTQKKGNGGLDFSI-DEVLATKKPGTIRIGLDIGGGVATFAVRMMERN-----ITIVTTSMNLNGPFNN 274 (392)
Q Consensus 201 cFd~~~~e~~~w~~~~~~~~~~~lI-~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g-----~~vvg~~iD~~a~~~~ 274 (392)
+|+ .++++|+..+........+ ..+....+. ....|||+|||+|.++..+++.. ..++| +|++..+..
T Consensus 53 --~~~-~ar~~fl~~g~y~~l~~~i~~~l~~~l~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~g--iD~s~~~l~ 126 (272)
T PRK11088 53 --EMM-QARRAFLDAGHYQPLRDAVANLLAERLDE-KATALLDIGCGEGYYTHALADALPEITTMQLFG--LDISKVAIK 126 (272)
T ss_pred --HHH-HHHHHHHHCCChHHHHHHHHHHHHHhcCC-CCCeEEEECCcCCHHHHHHHHhcccccCCeEEE--ECCCHHHHH
Confidence 343 4555666554311122222 222222221 22345999999999999998742 35666 666445555
Q ss_pred HHHhc-CCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 275 FIASR-GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 275 ~aa~r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
.++++ ..+.+.++|...+|+++++||+|++.++. ..+.+++|+|||||+|++...
T Consensus 127 ~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~----------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 127 YAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP----------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred HHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC----------CCHHHHHhhccCCCEEEEEeC
Confidence 55544 34688999999999999999999987642 135899999999999988753
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=1.6e-18 Score=163.65 Aligned_cols=127 Identities=22% Similarity=0.358 Sum_probs=102.0
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhcC------CccEEEeccCcCCCCCCcccEEEE
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASRG------VVPLYISISQRLPFFDNTLDIVHS 304 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~rg------~i~~~~~d~~~Lpf~d~sFDlV~s 304 (392)
++.++ ||||||||.++..+++.. .+|++ +|++..+.+.+.++- .++|+++|++.|||+|++||+|.+
T Consensus 51 ~g~~v---LDva~GTGd~a~~~~k~~g~g~v~~--~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~ 125 (238)
T COG2226 51 PGDKV---LDVACGTGDMALLLAKSVGTGEVVG--LDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTI 125 (238)
T ss_pred CCCEE---EEecCCccHHHHHHHHhcCCceEEE--EECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEe
Confidence 55666 999999999999999954 45666 677556666555442 167999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccch--------------------------------------
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL-------------------------------------- 346 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l-------------------------------------- 346 (392)
++.++++ .+.+++|+|++|||||||++++.++..+....
T Consensus 126 ~fglrnv---~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~ 202 (238)
T COG2226 126 SFGLRNV---TDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRF 202 (238)
T ss_pred eehhhcC---CCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhC
Confidence 9999998 45567999999999999999888864322110
Q ss_pred --HHHHHHHHHHcCCeEEEEEEe
Q 047630 347 --EDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 347 --~~~l~~ll~~aGf~~i~w~~~ 367 (392)
.+++.++++++||+.+.|...
T Consensus 203 p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 203 PDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred CCHHHHHHHHHhcCceEEeeEee
Confidence 677899999999999997743
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=6.5e-18 Score=159.86 Aligned_cols=130 Identities=22% Similarity=0.379 Sum_probs=74.3
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCchhHHHHHhc----C--CccEEEeccCcCCCCCCc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGPFNNFIASR----G--VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~~~~~aa~r----g--~i~~~~~d~~~Lpf~d~s 298 (392)
.+...++.+| ||+|||||.++..+++. + ..|++ +|++..+.+.+.++ + .++++++|++.+|+++++
T Consensus 42 ~~~~~~g~~v---LDv~~GtG~~~~~l~~~~~~~~~v~~--vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~s 116 (233)
T PF01209_consen 42 LLGLRPGDRV---LDVACGTGDVTRELARRVGPNGKVVG--VDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNS 116 (233)
T ss_dssp HHT--S--EE---EEET-TTSHHHHHHGGGSS---EEEE--EES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-
T ss_pred ccCCCCCCEE---EEeCCChHHHHHHHHHHCCCccEEEE--ecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCc
Confidence 3444555555 99999999999999884 3 46666 66655665544432 2 478999999999999999
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccch--------------------------------
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL-------------------------------- 346 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l-------------------------------- 346 (392)
||+|++.+.++++. +..+.++|++|+|||||++++.++..+....
T Consensus 117 fD~v~~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~ 193 (233)
T PF01209_consen 117 FDAVTCSFGLRNFP---DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPE 193 (233)
T ss_dssp EEEEEEES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-------------------------
T ss_pred eeEEEHHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccc
Confidence 99999999999873 4557999999999999999888875443221
Q ss_pred -------HHHHHHHHHHcCCeEEEEE
Q 047630 347 -------EDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 347 -------~~~l~~ll~~aGf~~i~w~ 365 (392)
.+++.++++++||+.++++
T Consensus 194 Si~~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 194 SIRRFPSPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 5667788888888887765
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.66 E-value=1.2e-15 Score=146.68 Aligned_cols=129 Identities=22% Similarity=0.219 Sum_probs=98.2
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCchhHHHHHhc---------CCccEEEeccCcCCCCC
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGPFNNFIASR---------GVVPLYISISQRLPFFD 296 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~~~~~aa~r---------g~i~~~~~d~~~Lpf~d 296 (392)
+.+.++.++ ||+|||+|.++..+++. + ..++| +|++..+.+.+.++ ..+.++++|++.+|+++
T Consensus 69 ~~~~~~~~V---LDlGcGtG~~~~~la~~~~~~~~V~g--vD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~ 143 (261)
T PLN02233 69 SGAKMGDRV---LDLCCGSGDLAFLLSEKVGSDGKVMG--LDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD 143 (261)
T ss_pred hCCCCCCEE---EEECCcCCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence 344444455 99999999999999875 3 37777 55644555544322 13678999999999999
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc--------------------------------
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------------------------------- 344 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------------------------------- 344 (392)
++||+|++.++++++. +...+++|++|+|||||++++.++.....
T Consensus 144 ~sfD~V~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 220 (261)
T PLN02233 144 CYFDAITMGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLK 220 (261)
T ss_pred CCEeEEEEecccccCC---CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHH
Confidence 9999999999999873 44579999999999999998887643221
Q ss_pred ------chHHHHHHHHHHcCCeEEEEE
Q 047630 345 ------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 345 ------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
...+++.++++++||+.++..
T Consensus 221 ~s~~~f~s~~el~~ll~~aGF~~~~~~ 247 (261)
T PLN02233 221 SSINEYLTGEELEKLALEAGFSSAKHY 247 (261)
T ss_pred HHHHhcCCHHHHHHHHHHCCCCEEEEE
Confidence 015668889999999998765
No 6
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.64 E-value=5.8e-16 Score=157.42 Aligned_cols=208 Identities=18% Similarity=0.258 Sum_probs=144.7
Q ss_pred CCCccccCCCC-----CCCCCCCCCCCCCCCCCCCcccccccccCcchhhhccccCCCCCCCCcccccccccccceeccC
Q 047630 142 RRRCRAVGPSH-----YIEPYPLPKSLWTTPPDSSLVWTAYTCKNYTCLINRKHTQKGFDDCKDCFDLQGVEKIRWTQKK 216 (392)
Q Consensus 142 ~r~c~~~~p~~-----y~~p~p~p~s~~~~p~d~~~~W~~y~~~~~~~L~~~~~~~~~~~~c~~cFd~~~~e~~~w~~~~ 216 (392)
.+.|+.+.|+. -..+-+||+++...|+.-.. ..+...+. +....+.++|...
T Consensus 293 l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~-------~~~~g~~~---------------e~F~~Dt~~Wk~~- 349 (506)
T PF03141_consen 293 LEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSS-------GSIPGISP---------------EEFKEDTKHWKKR- 349 (506)
T ss_pred hhhhcCcCCcccccccccCCCCChhhhccCchhhhc-------CCcCCCCH---------------HHHHHHHHHHHHH-
Confidence 56899988874 45788999999777754321 01111111 1123455667443
Q ss_pred CCCcHHHHHHHHHh-hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC
Q 047630 217 GNGGLDFSIDEVLA-TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF 295 (392)
Q Consensus 217 ~~~~~~~lI~~ll~-l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~ 295 (392)
++.+.. ++. ....+++|+|+|+.+|.|.||++|.+..+.|.-+......+....+.+||++..++...+.+++.
T Consensus 350 ----V~~Y~~-l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTY 424 (506)
T PF03141_consen 350 ----VSHYKK-LLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTY 424 (506)
T ss_pred ----HHHHHH-hhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCC
Confidence 233322 222 23447899999999999999999999998885544333345556899999999999999999999
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCc
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPE 375 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~ 375 (392)
+++||+||+...+..+.++..++.+|.||+|+|||||.+||.+... ....++.+++...++...+. .+.+..
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~----vl~~v~~i~~~lrW~~~~~d----~e~g~~ 496 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD----VLEKVKKIAKSLRWEVRIHD----TEDGPD 496 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH----HHHHHHHHHHhCcceEEEEe----cCCCCC
Confidence 9999999999999999999999999999999999999999987543 23335556665444333222 223334
Q ss_pred ccceeeEEEEEc
Q 047630 376 LREMYLSALLEK 387 (392)
Q Consensus 376 ~~e~ylsai~~K 387 (392)
..|..| +.+|
T Consensus 497 ~~EkiL--~~~K 506 (506)
T PF03141_consen 497 GPEKIL--ICQK 506 (506)
T ss_pred CCceEE--EEEC
Confidence 456644 6665
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.64 E-value=8.4e-16 Score=122.57 Aligned_cols=91 Identities=31% Similarity=0.462 Sum_probs=74.0
Q ss_pred EEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhcC---CccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 241 LDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 241 LDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
||+|||+|.++..+++. +..++++| ++....+.+.++. .+.+..++.+++|+++++||+|++..+++++ ++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D--~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGID--ISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEE--S-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEe--CCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 89999999999999998 89999955 5345555444432 2458999999999999999999999999997 66
Q ss_pred HHHHHHHHHHcccCCcEEEE
Q 047630 317 LHFLMFDIYRVLRPGGLFWL 336 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii 336 (392)
...+++|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 67899999999999999986
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.62 E-value=1e-14 Score=145.40 Aligned_cols=125 Identities=21% Similarity=0.265 Sum_probs=95.9
Q ss_pred cEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCCCCCCcccEEEEccccc
Q 047630 238 RIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~ 309 (392)
..|||||||+|.++..+++. +..|+|+|++ ..+.+. +.+.+ .+.++++|+..+|+++++||+|++..+++
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s--~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKYGANVKGITLS--PVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhcCCEEEEEECC--HHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence 34599999999999999985 7889885544 343332 22233 37889999999999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeeccc----cc-c----------------------hHHHHHHHHHHcCCeEE
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV----GA-Q----------------------LEDVYVPLIESVGFNKL 362 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~----~~-~----------------------l~~~l~~ll~~aGf~~i 362 (392)
|+. +...++++++|+|||||.|++.++... .+ . ..+++.++++++||..+
T Consensus 198 h~~---d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v 274 (340)
T PLN02244 198 HMP---DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDI 274 (340)
T ss_pred ccC---CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCee
Confidence 984 345799999999999999998765321 00 0 14578899999999998
Q ss_pred EEEEe
Q 047630 363 KWVVG 367 (392)
Q Consensus 363 ~w~~~ 367 (392)
+....
T Consensus 275 ~~~d~ 279 (340)
T PLN02244 275 KTEDW 279 (340)
T ss_pred EeeeC
Confidence 87633
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.61 E-value=8e-15 Score=141.18 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=99.2
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
+.++.+| ||||||+|..+..+++ .+.++++ +|++..+.+.+.++ ..+.+..+|+...|+++++||+|++.
T Consensus 50 l~~~~~V---LDiGcG~G~~a~~la~~~~~~v~g--iD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~ 124 (263)
T PTZ00098 50 LNENSKV---LDIGSGLGGGCKYINEKYGAHVHG--VDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSR 124 (263)
T ss_pred CCCCCEE---EEEcCCCChhhHHHHhhcCCEEEE--EECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEh
Confidence 4455555 9999999999999987 4678888 44534444444332 24778889998889999999999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----c--------------hHHHHHHHHHHcCCeEEEEEE
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----Q--------------LEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----~--------------l~~~l~~ll~~aGf~~i~w~~ 366 (392)
.+++|+ +..+...++++++|+|||||+|++.++..... + ..+++.++++++||+.+.+..
T Consensus 125 ~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 125 DAILHL-SYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred hhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEe
Confidence 888885 33456789999999999999999987633210 0 146799999999999998873
No 10
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.61 E-value=1e-14 Score=134.47 Aligned_cols=133 Identities=20% Similarity=0.228 Sum_probs=94.0
Q ss_pred HHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCcCCCCCCcc
Q 047630 226 DEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQRLPFFDNTL 299 (392)
Q Consensus 226 ~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~Lpf~d~sF 299 (392)
.+.+...+++++ ||+|||+|.++..|++++.+|+++| ++..+.+. +...+. +.+.++|...+++ +++|
T Consensus 23 ~~~l~~~~~~~v---LDiGcG~G~~a~~La~~g~~V~gvD--~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~f 96 (197)
T PRK11207 23 LEAVKVVKPGKT---LDLGCGNGRNSLYLAANGFDVTAWD--KNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEY 96 (197)
T ss_pred HHhcccCCCCcE---EEECCCCCHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCc
Confidence 334444455566 9999999999999999999999955 43333332 223332 5677788877776 4679
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-------c---hHHHHHHHHHHcCCeEEEEEEe
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------Q---LEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------~---l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
|+|++..++|+ .+++.+..+++++.|+|||||++++..++...+ . ..+++.+.++ ||+.+.....
T Consensus 97 D~I~~~~~~~~-~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~ 171 (197)
T PRK11207 97 DFILSTVVLMF-LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNED 171 (197)
T ss_pred CEEEEecchhh-CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCC
Confidence 99999999876 456677899999999999999976654432211 0 1455777776 7988877533
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.59 E-value=1.4e-14 Score=127.09 Aligned_cols=131 Identities=21% Similarity=0.287 Sum_probs=96.0
Q ss_pred HHHHHHHHHh-hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcc
Q 047630 221 LDFSIDEVLA-TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTL 299 (392)
Q Consensus 221 ~~~lI~~ll~-l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sF 299 (392)
....+..+.. ..++++| ||||||+|.++..|++.+.+++++|++ ...... ..+.....+....+.++++|
T Consensus 9 ~~~~~~~~~~~~~~~~~v---LDiGcG~G~~~~~l~~~~~~~~g~D~~--~~~~~~----~~~~~~~~~~~~~~~~~~~f 79 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRV---LDIGCGTGSFLRALAKRGFEVTGVDIS--PQMIEK----RNVVFDNFDAQDPPFPDGSF 79 (161)
T ss_dssp HHHHHHHHHTCTTTTSEE---EEESSTTSHHHHHHHHTTSEEEEEESS--HHHHHH----TTSEEEEEECHTHHCHSSSE
T ss_pred HHHHHHHHhcccCCCCEE---EEEcCCCCHHHHHHHHhCCEEEEEECC--HHHHhh----hhhhhhhhhhhhhhccccch
Confidence 4455566654 3344555 999999999999999999999995543 333323 22334444444555678999
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-----------cc---------hHHHHHHHHHHcCC
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-----------AQ---------LEDVYVPLIESVGF 359 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-----------~~---------l~~~l~~ll~~aGf 359 (392)
|+|+|+.+++|+. +...+|+++.++|||||++++....... .. ..+.+..+++++||
T Consensus 80 D~i~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~ 156 (161)
T PF13489_consen 80 DLIICNDVLEHLP---DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGF 156 (161)
T ss_dssp EEEEEESSGGGSS---HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTE
T ss_pred hhHhhHHHHhhcc---cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCC
Confidence 9999999999973 5678999999999999999999875321 00 06789999999999
Q ss_pred eEEE
Q 047630 360 NKLK 363 (392)
Q Consensus 360 ~~i~ 363 (392)
++++
T Consensus 157 ~iv~ 160 (161)
T PF13489_consen 157 EIVE 160 (161)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 12
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.57 E-value=2.2e-14 Score=134.53 Aligned_cols=119 Identities=26% Similarity=0.439 Sum_probs=94.7
Q ss_pred EEEEcCCcchHHHHHHHc--------CCEEEEEecCCCchhHHHHHhc----CC-----ccEEEeccCcCCCCCCcccEE
Q 047630 240 GLDIGGGVATFAVRMMER--------NITIVTTSMNLNGPFNNFIASR----GV-----VPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--------g~~vvg~~iD~~a~~~~~aa~r----g~-----i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+||++||||.++..+.+. +.+|++ +|+++++.....+| ++ +.|+.+|+++|||++++||+.
T Consensus 104 ~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v--~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~y 181 (296)
T KOG1540|consen 104 VLDVAGGTGDIAFRILRHVKSQFGDRESKVTV--LDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAY 181 (296)
T ss_pred EEEecCCcchhHHHHHHhhccccCCCCceEEE--EeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeE
Confidence 499999999999988872 256777 55655666543332 22 678999999999999999999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc-h-----------------------------------
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ-L----------------------------------- 346 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~-l----------------------------------- 346 (392)
...+.+.++ .++++.|+|++|||||||+|.+-+|-....+ +
T Consensus 182 TiafGIRN~---th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~r 258 (296)
T KOG1540|consen 182 TIAFGIRNV---THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRR 258 (296)
T ss_pred EEecceecC---CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhc
Confidence 999999998 4455699999999999999988877443311 1
Q ss_pred ---HHHHHHHHHHcCCeEEE
Q 047630 347 ---EDVYVPLIESVGFNKLK 363 (392)
Q Consensus 347 ---~~~l~~ll~~aGf~~i~ 363 (392)
.+++..+++++||..++
T Consensus 259 fp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 259 FPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred CCCHHHHHHHHHHcCCcccc
Confidence 67799999999999987
No 13
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=5e-14 Score=134.66 Aligned_cols=124 Identities=18% Similarity=0.101 Sum_probs=93.9
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
.|||||||+|.++..+++. +..++| +|++..+.+.+.+++ +.++++|++.++ ++++||+|+++.++|++. +
T Consensus 32 ~vLDlGcG~G~~~~~l~~~~p~~~v~g--vD~s~~~~~~a~~~~-~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~---d 104 (255)
T PRK14103 32 RVVDLGCGPGNLTRYLARRWPGAVIEA--LDSSPEMVAAARERG-VDARTGDVRDWK-PKPDTDVVVSNAALQWVP---E 104 (255)
T ss_pred EEEEEcCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHhcC-CcEEEcChhhCC-CCCCceEEEEehhhhhCC---C
Confidence 3499999999999999986 567777 556445555555555 789999988875 568999999999998863 3
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecc----------------ccc--------------chHHHHHHHHHHcCCeEEEEEE
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFC----------------VGA--------------QLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~----------------~~~--------------~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
.+.++++++++|||||.+++..... .+. ...+.+.++++++||+...|..
T Consensus 105 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 184 (255)
T PRK14103 105 HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDAWET 184 (255)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEEEee
Confidence 4579999999999999998753110 000 0156799999999999877775
Q ss_pred eec
Q 047630 367 GRK 369 (392)
Q Consensus 367 ~~k 369 (392)
...
T Consensus 185 ~~~ 187 (255)
T PRK14103 185 TYV 187 (255)
T ss_pred eee
Confidence 443
No 14
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.56 E-value=1.9e-14 Score=142.20 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=95.6
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
.|||||||+|.++..+++.+.+|+| +|++..+.+.+.++ + .+.+++++++.+++.+++||+|++..+++|+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~~V~G--ID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGATVTG--VDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV 211 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCCEEEE--EeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence 3599999999999999999999998 55544444433322 1 3678899999999888999999999999998
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccc------------------------cc--hHHHHHHHHHHcCCeEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------------------------AQ--LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~------------------------~~--l~~~l~~ll~~aGf~~i~w~ 365 (392)
.++ ..+++++.|+|||||.+++..+.... .. ..+++.++++++||+.+...
T Consensus 212 ~d~---~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 212 ANP---AEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 544 46999999999999999988642210 00 16779999999999988764
No 15
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.55 E-value=6.6e-14 Score=138.61 Aligned_cols=125 Identities=22% Similarity=0.186 Sum_probs=94.0
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH--HHHh-----cCCccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN--FIAS-----RGVVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~--~aa~-----rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||||||+|.++..+++.+. .|+| +|++..+.. .+.+ ...+.++.++++.+|+ +++||+|+|..+++|
T Consensus 125 ~VLDIGCG~G~~~~~la~~g~~~V~G--iD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 125 TVLDVGCGNGYHMWRMLGAGAKLVVG--IDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred EEEEeccCCcHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 349999999999999999876 4777 556443332 1211 1236788889999998 889999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccc---------cc-----------hHHHHHHHHHHcCCeEEEEEEeec
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---------AQ-----------LEDVYVPLIESVGFNKLKWVVGRK 369 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---------~~-----------l~~~l~~ll~~aGf~~i~w~~~~k 369 (392)
.. +...++++++++|||||.|+++.+.... .. -.+.+..+++++||+.++......
T Consensus 202 ~~---dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 202 RR---SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred cC---CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 74 3446999999999999999987643211 00 145689999999999998875544
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=1.6e-13 Score=131.31 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=93.2
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCC-CCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLP-FFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lp-f~d~sFDlV~s~~~l~~ 310 (392)
.|||+|||+|.++..+++.+..|+++| ++..+.+.+.+ .+ .+.+++++...++ +.+++||+|++..++++
T Consensus 47 ~vLDiGcG~G~~a~~la~~g~~v~~vD--~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~ 124 (255)
T PRK11036 47 RVLDAGGGEGQTAIKLAELGHQVILCD--LSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEW 124 (255)
T ss_pred EEEEeCCCchHHHHHHHHcCCEEEEEE--CCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHh
Confidence 459999999999999999999999854 53444443332 23 2578888887764 56789999999999988
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccc------------------------------cchHHHHHHHHHHcCCe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------------------------------AQLEDVYVPLIESVGFN 360 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~------------------------------~~l~~~l~~ll~~aGf~ 360 (392)
+.++ ..++.++.|+|||||++++..+.... .-..+++.++++++||+
T Consensus 125 ~~~~---~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~ 201 (255)
T PRK11036 125 VADP---KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQ 201 (255)
T ss_pred hCCH---HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCe
Confidence 7443 46999999999999999876432110 01156788999999999
Q ss_pred EEEEEEe
Q 047630 361 KLKWVVG 367 (392)
Q Consensus 361 ~i~w~~~ 367 (392)
.+.+.-+
T Consensus 202 ~~~~~gi 208 (255)
T PRK11036 202 IMGKTGV 208 (255)
T ss_pred EeeeeeE
Confidence 9877643
No 17
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.51 E-value=4.3e-13 Score=127.67 Aligned_cols=99 Identities=21% Similarity=0.271 Sum_probs=79.7
Q ss_pred ccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-CccEEEeccCcCCCCCCcccEEEEcccccccCCch
Q 047630 237 IRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
...|||+|||+|.++..+++.+..++++| ++..+.+.+.++. ...++++|.+.+|+++++||+|+++.++++. .
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D--~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~---~ 117 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTALD--LSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWC---G 117 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEEEE--CCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhc---C
Confidence 34569999999999999999998998854 5445555554443 2578899999999999999999999998765 3
Q ss_pred hHHHHHHHHHHcccCCcEEEEEeec
Q 047630 316 LLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
+...++.++.|+|||||.+++..+.
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 4457999999999999999988653
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.51 E-value=4.1e-13 Score=125.94 Aligned_cols=129 Identities=20% Similarity=0.251 Sum_probs=93.5
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCcccE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~sFDl 301 (392)
+.++.+| ||+|||+|.++..+++. +..+++ +|++..+.+.+.+ .+ .+.++.+|...+++++++||+
T Consensus 43 ~~~~~~v---LDiGcG~G~~~~~la~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 117 (231)
T TIGR02752 43 VQAGTSA---LDVCCGTADWSIALAEAVGPEGHVIG--LDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDY 117 (231)
T ss_pred CCCCCEE---EEeCCCcCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccE
Confidence 3444455 99999999999999874 347777 4453344433222 22 367888999889988899999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc---------------------------c---------
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA---------------------------Q--------- 345 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~---------------------------~--------- 345 (392)
|++.++++++ .+..++++++.|+|||||++++.+...... +
T Consensus 118 V~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 194 (231)
T TIGR02752 118 VTIGFGLRNV---PDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTR 194 (231)
T ss_pred EEEecccccC---CCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHH
Confidence 9999999876 334579999999999999998776422110 0
Q ss_pred ---hHHHHHHHHHHcCCeEEEEEEe
Q 047630 346 ---LEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 346 ---l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
..+++.++++++||+.++....
T Consensus 195 ~~~~~~~l~~~l~~aGf~~~~~~~~ 219 (231)
T TIGR02752 195 DFPGMDELAEMFQEAGFKDVEVKSY 219 (231)
T ss_pred HcCCHHHHHHHHHHcCCCeeEEEEc
Confidence 0356889999999999876633
No 19
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.51 E-value=2.9e-13 Score=133.29 Aligned_cols=127 Identities=20% Similarity=0.139 Sum_probs=92.2
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHH--HHh-----cCCccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNF--IAS-----RGVVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~--aa~-----rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.|||||||+|.++..++..+. .|+| +|++..+... +++ ...+.+...+++.+|.. ++||+|+|+.+++|
T Consensus 124 ~VLDvGCG~G~~~~~~~~~g~~~v~G--iDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H 200 (314)
T TIGR00452 124 TILDVGCGSGYHMWRMLGHGAKSLVG--IDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYH 200 (314)
T ss_pred EEEEeccCCcHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhc
Confidence 349999999999999998876 4777 6664443321 111 12356667788888764 58999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccc---------cc-----------hHHHHHHHHHHcCCeEEEEEEeecc
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---------AQ-----------LEDVYVPLIESVGFNKLKWVVGRKL 370 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---------~~-----------l~~~l~~ll~~aGf~~i~w~~~~k~ 370 (392)
+.+ ...+|++++|+|||||.|++....... +. -...+..+++++||+.++......+
T Consensus 201 ~~d---p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 201 RKS---PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLKT 277 (314)
T ss_pred cCC---HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccCC
Confidence 744 346999999999999999987642211 00 1456888999999999998866554
Q ss_pred C
Q 047630 371 D 371 (392)
Q Consensus 371 d 371 (392)
.
T Consensus 278 t 278 (314)
T TIGR00452 278 T 278 (314)
T ss_pred C
Confidence 3
No 20
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.50 E-value=9e-13 Score=131.00 Aligned_cols=147 Identities=18% Similarity=0.138 Sum_probs=104.2
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc---CCccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR---GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r---g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
.|||||||+|.++..+++. +.+++++| ++..+.+.+.++ ..+.++.+|.+.+++++++||+|++..+++++.+
T Consensus 116 ~VLDLGcGtG~~~l~La~~~~~~~VtgVD--~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d 193 (340)
T PLN02490 116 KVVDVGGGTGFTTLGIVKHVDAKNVTILD--QSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
T ss_pred EEEEEecCCcHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC
Confidence 3499999999999888873 45777744 534444444332 2368899999999999999999999999988744
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeecccc-------------cchHHHHHHHHHHcCCeEEEEEEeeccCC-CCc-cc-
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-------------AQLEDVYVPLIESVGFNKLKWVVGRKLDR-GPE-LR- 377 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~~~-------------~~l~~~l~~ll~~aGf~~i~w~~~~k~d~-~~~-~~- 377 (392)
. +.++++++|+|||||.+++....... -...+++.++++++||+.++++....... +.+ .+
T Consensus 194 ~---~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~ 270 (340)
T PLN02490 194 P---QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGL 270 (340)
T ss_pred H---HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccc
Confidence 3 46999999999999999776432111 01256799999999999999886543221 111 11
Q ss_pred ceeeEEEEEcCCC
Q 047630 378 EMYLSALLEKPFL 390 (392)
Q Consensus 378 e~ylsai~~Kp~~ 390 (392)
.+-.++..+||-+
T Consensus 271 ~~~~~v~~~k~~~ 283 (340)
T PLN02490 271 IMGCSVTGVKPAS 283 (340)
T ss_pred eeeEEEEEecccc
Confidence 2224567788754
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.49 E-value=3.1e-13 Score=140.29 Aligned_cols=122 Identities=20% Similarity=0.332 Sum_probs=93.8
Q ss_pred EEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhc--C---CccEEEeccCcCCCCCCcccEEEEcccccccC
Q 047630 239 IGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASR--G---VVPLYISISQRLPFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~r--g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~ 312 (392)
.|||||||+|.++..+++. +..++|+| ++..+...+.++ + .+.+.++|...+++++++||+|++..+++|+.
T Consensus 269 ~vLDiGcG~G~~~~~la~~~~~~v~gvD--iS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~ 346 (475)
T PLN02336 269 KVLDVGCGIGGGDFYMAENFDVHVVGID--LSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ 346 (475)
T ss_pred EEEEEeccCCHHHHHHHHhcCCEEEEEE--CCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccC
Confidence 3499999999999999874 67888855 533444433322 1 36788999988898889999999999999984
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEEeeccccc-----------------chHHHHHHHHHHcCCeEEEEE
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-----------------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-----------------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+ .+.++++++|+|||||.+++.++..... ...+.+.++++++||+++.+.
T Consensus 347 d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 347 D---KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred C---HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 3 4569999999999999999987643210 015568999999999998765
No 22
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.49 E-value=5e-13 Score=130.20 Aligned_cols=149 Identities=15% Similarity=0.191 Sum_probs=100.8
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcCC-ccEEEeccCcCCCCCCcccEEEEc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRGV-VPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg~-i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
..+++++ ||+|||+|.++..+++.|.+|+++|++ ..+.+ .+.+.+. +.+.+.|....++ +++||+|++.
T Consensus 118 ~~~~~~v---LDlGcG~G~~~~~la~~g~~V~avD~s--~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~ 191 (287)
T PRK12335 118 TVKPGKA---LDLGCGQGRNSLYLALLGFDVTAVDIN--QQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILST 191 (287)
T ss_pred ccCCCCE---EEeCCCCCHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEc
Confidence 3344555 999999999999999999999995544 33333 2233342 5566777766555 6789999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----------chHHHHHHHHHHcCCeEEEEEEee----ccC
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------QLEDVYVPLIESVGFNKLKWVVGR----KLD 371 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------~l~~~l~~ll~~aGf~~i~w~~~~----k~d 371 (392)
.++++ .+++.+..+++++.|+|||||++++........ --..++.+.+.. |+++++.... +.+
T Consensus 192 ~vl~~-l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e~~~~~~~~~ 268 (287)
T PRK12335 192 VVLMF-LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNENVGHLHKTD 268 (287)
T ss_pred chhhh-CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEeccccchhhhc
Confidence 99977 456677899999999999999976654322111 115667777765 8998885332 333
Q ss_pred C-CCcccceeeEEEEEcC
Q 047630 372 R-GPELREMYLSALLEKP 388 (392)
Q Consensus 372 ~-~~~~~e~ylsai~~Kp 388 (392)
. |....-.+.+.+.||+
T Consensus 269 ~~g~~~~~~~~~~~a~k~ 286 (287)
T PRK12335 269 ENGNRIKLRFATLLAKKV 286 (287)
T ss_pred cCCCeeeeeeeeeccccC
Confidence 3 2222234456777776
No 23
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.49 E-value=3.9e-13 Score=123.74 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=90.8
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcCC-ccEEEeccCcCCCCCCcccEEE
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRGV-VPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg~-i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
+...+++++ ||+|||+|.++..+++++..|+++|++. .+.+. +.+.+. +.+.+.+....++ +++||+|+
T Consensus 26 ~~~~~~~~v---LDiGcG~G~~a~~la~~g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~ 99 (195)
T TIGR00477 26 VKTVAPCKT---LDLGCGQGRNSLYLSLAGYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIF 99 (195)
T ss_pred hccCCCCcE---EEeCCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEE
Confidence 334444555 9999999999999999999999955543 33332 223342 4566667666665 35799999
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
++.+++++ +...+..++++++|+|||||++++..+..... -.++++.+++. +|+.+.+...
T Consensus 100 ~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~ 170 (195)
T TIGR00477 100 STVVFMFL-QAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEA 170 (195)
T ss_pred EecccccC-CHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecc
Confidence 99999774 55667789999999999999976655432111 11566777776 4899888833
No 24
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.47 E-value=3.8e-13 Score=125.90 Aligned_cols=101 Identities=16% Similarity=0.247 Sum_probs=79.5
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcCC-ccEEEeccCcCCCCCCcccEEEEccc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRGV-VPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg~-i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
++.+| ||||||-|.++..||+.|..|+|+| ++....+.+. +.++ +.+....++++....++||+|+|+.+
T Consensus 59 ~g~~v---LDvGCGgG~Lse~mAr~Ga~VtgiD--~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV 133 (243)
T COG2227 59 PGLRV---LDVGCGGGILSEPLARLGASVTGID--ASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV 133 (243)
T ss_pred CCCeE---EEecCCccHhhHHHHHCCCeeEEec--CChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhH
Confidence 45666 9999999999999999999999955 4334444332 3332 45777778888766689999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
++|..+++ .+++++.+.+||||.++++....
T Consensus 134 lEHv~dp~---~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 134 LEHVPDPE---SFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred HHccCCHH---HHHHHHHHHcCCCcEEEEecccc
Confidence 99984444 59999999999999999998643
No 25
>PRK05785 hypothetical protein; Provisional
Probab=99.46 E-value=1.2e-12 Score=123.27 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=71.3
Q ss_pred EEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 240 GLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
|||+|||||.++..+++. +..++| +|++..+.+.+.++. .+++++++.+|+++++||+|++.++++++ .+.+
T Consensus 55 VLDlGcGtG~~~~~l~~~~~~~v~g--vD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~---~d~~ 127 (226)
T PRK05785 55 VLDVAAGKGELSYHFKKVFKYYVVA--LDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHAS---DNIE 127 (226)
T ss_pred EEEEcCCCCHHHHHHHHhcCCEEEE--ECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhcc---CCHH
Confidence 499999999999999987 578888 666556655555543 57889999999999999999999999887 4456
Q ss_pred HHHHHHHHcccCCc
Q 047630 319 FLMFDIYRVLRPGG 332 (392)
Q Consensus 319 ~~L~el~RvLKPGG 332 (392)
++++|++|+|||.+
T Consensus 128 ~~l~e~~RvLkp~~ 141 (226)
T PRK05785 128 KVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHhcCce
Confidence 79999999999953
No 26
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.45 E-value=1.6e-12 Score=118.70 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=102.3
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEccc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
.+..+++.+||+|||.|.++..|+.+.-.++++| +++...+.+.+| ..+.+.++++... .++++||+|+++.+
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavD--is~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVD--ISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEV 115 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEE--S-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEEe--CCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehH
Confidence 3557788889999999999999999988888855 533444444433 2478888887664 47899999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc----ccch--HHHHHHHHHHcCCeEEEEEEeeccCCCCcccceee
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV----GAQL--EDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYL 381 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~----~~~l--~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~yl 381 (392)
++++.+.+++..++..+.+.|+|||.|++.++... ++.. .+.+.+++.+. +..|.-..-. +...+|-.+
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~----~~~~~~~~~ 190 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVERVECR----GGSPNEDCL 190 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-----SSTTSEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhheeEEEEc----CCCCCCceE
Confidence 98877778889999999999999999999986321 1111 55577777775 5544433222 223456666
Q ss_pred EEEEEcCCCCC
Q 047630 382 SALLEKPFLDA 392 (392)
Q Consensus 382 sai~~Kp~~~~ 392 (392)
.+.|+||++.+
T Consensus 191 ~~~~~~~~~~~ 201 (201)
T PF05401_consen 191 LARFRNPVSAS 201 (201)
T ss_dssp EEEEE--SSS-
T ss_pred eeeecCCcCCC
Confidence 79999998764
No 27
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.44 E-value=3.3e-12 Score=118.61 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=76.8
Q ss_pred EEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc-CCccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 240 GLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
|||+|||+|.++..+++. +..++| +|++..+.+.+.++ ..+.+.++++.. |+++++||+|++..+++|+ +++.
T Consensus 47 VLDiGCG~G~~~~~L~~~~~~~~v~g--iDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl-~p~~ 122 (204)
T TIGR03587 47 ILELGANIGMNLAALKRLLPFKHIYG--VEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHI-NPDN 122 (204)
T ss_pred EEEEecCCCHHHHHHHHhCCCCeEEE--EECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhC-CHHH
Confidence 499999999999999885 678888 55544555555443 236788888877 8889999999999999996 5677
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecc
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+.+++++++|++ ++++++.+++.
T Consensus 123 ~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 123 LPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred HHHHHHHHHhhc--CcEEEEEEeeC
Confidence 889999999998 57888887654
No 28
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.43 E-value=9.7e-13 Score=125.42 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=74.3
Q ss_pred EEEEcCCcchHHHHHHH----cCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMME----RNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~----~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
|||||||+|..+..+++ .+.++++ +|++..+.+.+.++ + .+.++++++..++++ .+|+|+++.++
T Consensus 60 vLDlGcGtG~~~~~l~~~~~~~~~~v~g--vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l 135 (247)
T PRK15451 60 VYDLGCSLGAATLSVRRNIHHDNCKIIA--IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTL 135 (247)
T ss_pred EEEEcccCCHHHHHHHHhcCCCCCeEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHH
Confidence 49999999999988876 3567777 55645555543332 2 378889998888764 48999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
|++ ++.....++++++|+|||||.|++.+.+
T Consensus 136 ~~l-~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 136 QFL-EPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HhC-CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 885 4555678999999999999999998743
No 29
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.42 E-value=2e-12 Score=124.66 Aligned_cols=130 Identities=22% Similarity=0.327 Sum_probs=94.6
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc-CC--EEEEEecCCCchhHHHHHhc----C--CccEEEeccCcCCCCCCccc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER-NI--TIVTTSMNLNGPFNNFIASR----G--VVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~--~vvg~~iD~~a~~~~~aa~r----g--~i~~~~~d~~~Lpf~d~sFD 300 (392)
.+.++.+| ||+|||+|..+..+++. +. .+++ +|++..+.+.+.++ + .+.+..++++.+++++++||
T Consensus 74 ~~~~g~~V---LDiG~G~G~~~~~~a~~~g~~~~v~g--vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 74 ELKPGETV---LDLGSGGGFDCFLAARRVGPTGKVIG--VDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred cCCCCCEE---EEeCCCCCHHHHHHHHHhCCCCEEEE--ECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCcee
Confidence 34555555 99999999987766653 43 5777 55644444433332 2 36778899999999889999
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-------------------chHHHHHHHHHHcCCeE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------------------QLEDVYVPLIESVGFNK 361 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------------------~l~~~l~~ll~~aGf~~ 361 (392)
+|++..+++++. +...++++++|+|||||+|++.++..... ...+++.++++++||..
T Consensus 149 ~Vi~~~v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 149 VIISNCVINLSP---DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred EEEEcCcccCCC---CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence 999999998763 34469999999999999999987543211 11456889999999999
Q ss_pred EEEEEe
Q 047630 362 LKWVVG 367 (392)
Q Consensus 362 i~w~~~ 367 (392)
++....
T Consensus 226 v~i~~~ 231 (272)
T PRK11873 226 ITIQPK 231 (272)
T ss_pred eEEEec
Confidence 876543
No 30
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.42 E-value=1.5e-12 Score=126.12 Aligned_cols=129 Identities=20% Similarity=0.228 Sum_probs=87.8
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHH----HHHhcCC---ccEEEeccCcCCCCCCcccE
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNN----FIASRGV---VPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d~~~Lpf~d~sFDl 301 (392)
.+.++.+| ||||||.|.++.+++++ |++|+|++++. ...+ .+.+.|+ +.+...|..+++. +||.
T Consensus 59 ~l~~G~~v---LDiGcGwG~~~~~~a~~~g~~v~gitlS~--~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~ 130 (273)
T PF02353_consen 59 GLKPGDRV---LDIGCGWGGLAIYAAERYGCHVTGITLSE--EQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDR 130 (273)
T ss_dssp T--TT-EE---EEES-TTSHHHHHHHHHH--EEEEEES-H--HHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SE
T ss_pred CCCCCCEE---EEeCCCccHHHHHHHHHcCcEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCE
Confidence 46677777 99999999999999997 99999966543 3333 3344453 6778888777654 8999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc---------------------cch--HHHHHHHHHHcC
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---------------------AQL--EDVYVPLIESVG 358 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~---------------------~~l--~~~l~~ll~~aG 358 (392)
|++..++.|+ .+...+.+++++.++|||||++++..+.... ..+ ..++...+++.|
T Consensus 131 IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~ 209 (273)
T PF02353_consen 131 IVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG 209 (273)
T ss_dssp EEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT
T ss_pred EEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC
Confidence 9999999995 5567788999999999999999887653211 111 555777889999
Q ss_pred CeEEEEEEe
Q 047630 359 FNKLKWVVG 367 (392)
Q Consensus 359 f~~i~w~~~ 367 (392)
|++..|...
T Consensus 210 l~v~~~~~~ 218 (273)
T PF02353_consen 210 LEVEDVENL 218 (273)
T ss_dssp -EEEEEEE-
T ss_pred EEEEEEEEc
Confidence 999988744
No 31
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.41 E-value=1e-11 Score=116.07 Aligned_cols=122 Identities=22% Similarity=0.339 Sum_probs=90.8
Q ss_pred EEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhc-------CCccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASR-------GVVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~r-------g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
+|||+|||+|.++..+++.+ .+++++| ++....+.+.++ ..+.+..++...+++.+++||+|++.+++
T Consensus 54 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D--~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 54 KVLDLACGTGDLAIALAKAVGKTGEVVGLD--FSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCCeEEEEe--CCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 34999999999999998854 6788855 433333332222 23678888888888878899999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc---------------------------------------hHHH
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---------------------------------------LEDV 349 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---------------------------------------l~~~ 349 (392)
+++ .+...++.++.++|+|||.+++.++...... ..++
T Consensus 132 ~~~---~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (239)
T PRK00216 132 RNV---PDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEE 208 (239)
T ss_pred ccC---CCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHH
Confidence 887 3455799999999999999988765322110 1355
Q ss_pred HHHHHHHcCCeEEEEE
Q 047630 350 YVPLIESVGFNKLKWV 365 (392)
Q Consensus 350 l~~ll~~aGf~~i~w~ 365 (392)
+.++++++||+.+...
T Consensus 209 ~~~~l~~aGf~~~~~~ 224 (239)
T PRK00216 209 LAAMLEEAGFERVRYR 224 (239)
T ss_pred HHHHHHhCCCceeeee
Confidence 8889999999998776
No 32
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.40 E-value=2.6e-12 Score=124.29 Aligned_cols=128 Identities=23% Similarity=0.292 Sum_probs=94.2
Q ss_pred EEEEEcCCcchHHHHHHHcCCE-EEEEecCCCchhHH-H-HHhc--C-Ccc-EEE-eccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNIT-IVTTSMNLNGPFNN-F-IASR--G-VVP-LYI-SISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~-vvg~~iD~~a~~~~-~-aa~r--g-~i~-~~~-~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
+|||||||.|+++.+|+.+|+. |+| +|.+..... + +.++ | ... +.. ..++++|. .++||+|+|..+|.|
T Consensus 118 ~VLDIGC~nGY~~frM~~~GA~~ViG--iDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 118 RVLDIGCNNGYYSFRMLGRGAKSVIG--IDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYH 194 (315)
T ss_pred EEEEecCCCcHHHHHHhhcCCCEEEE--ECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhc
Confidence 3499999999999999999985 777 566444332 1 1111 1 112 223 35788887 789999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccccch--------------------HHHHHHHHHHcCCeEEEEEEeecc
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL--------------------EDVYVPLIESVGFNKLKWVVGRKL 370 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l--------------------~~~l~~ll~~aGf~~i~w~~~~k~ 370 (392)
..++- ..|.++...|+|||.+++....-..++. ...+..+++++||+.++...+..+
T Consensus 195 rr~Pl---~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~T 271 (315)
T PF08003_consen 195 RRSPL---DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSPT 271 (315)
T ss_pred cCCHH---HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCccC
Confidence 75555 4899999999999999988764322211 666999999999999998876655
Q ss_pred CC
Q 047630 371 DR 372 (392)
Q Consensus 371 d~ 372 (392)
+.
T Consensus 272 t~ 273 (315)
T PF08003_consen 272 TI 273 (315)
T ss_pred CH
Confidence 44
No 33
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.40 E-value=2.3e-12 Score=120.29 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=90.9
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----cC---CccEEEeccCcCCCCCCcccEEEEccccc
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----RG---VVPLYISISQRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~ 309 (392)
.|||||||+|.++..+++. +.+++++| ++......+.+ .+ .+.++..|....+++ ++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid--~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYT--ISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 4699999999999999885 46777755 43344333222 22 367888888766664 5899999999999
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeecccc----c--------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG----A--------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~----~--------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
|+. +...++++++++|||||++++.++.... . ....+|.++++++||+.++....
T Consensus 79 ~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 79 HIK---DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred hCC---CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 873 3457999999999999999988764211 0 01456889999999999887643
No 34
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.40 E-value=8e-13 Score=109.52 Aligned_cols=99 Identities=17% Similarity=0.299 Sum_probs=74.3
Q ss_pred CCcccEEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHHHHHh----c---CCccEEEecc-CcCCCCCCcccEEE
Q 047630 234 PGTIRIGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNNFIAS----R---GVVPLYISIS-QRLPFFDNTLDIVH 303 (392)
Q Consensus 234 ~~~ir~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~~aa~----r---g~i~~~~~d~-~~Lpf~d~sFDlV~ 303 (392)
+++| ||||||+|.++..+++ .+.+++++|+| +.+.+.+.+ . ..+.++++|+ ..... .+.||+|+
T Consensus 2 ~~~v---LDlGcG~G~~~~~l~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~ 75 (112)
T PF12847_consen 2 GGRV---LDLGCGTGRLSIALARLFPGARVVGVDIS--PEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVI 75 (112)
T ss_dssp TCEE---EEETTTTSHHHHHHHHHHTTSEEEEEESS--HHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEE
T ss_pred CCEE---EEEcCcCCHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEE
Confidence 4455 9999999999999999 88999995544 444442222 2 2478899998 33333 45699999
Q ss_pred Ecc-cccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 304 SMH-VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 304 s~~-~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+.. +++++.+.+..+.+++++.+.|+|||+|++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999 56554444667789999999999999999874
No 35
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.39 E-value=2.2e-12 Score=118.39 Aligned_cols=133 Identities=16% Similarity=0.210 Sum_probs=89.2
Q ss_pred HHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchh-HHH-HHhcCC-ccEEEeccCcCCCCCCcccEE
Q 047630 226 DEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPF-NNF-IASRGV-VPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 226 ~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~-~~~-aa~rg~-i~~~~~d~~~Lpf~d~sFDlV 302 (392)
.+.....+.+++ ||+|||.|+.+.+|+++|.+|+++|++..+.. ... +.++++ +...+.|.....++ +.||+|
T Consensus 23 ~~a~~~~~~g~~---LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 23 LEAVPLLKPGKA---LDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp HHHCTTS-SSEE---EEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEE
T ss_pred HHHHhhcCCCcE---EEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEE
Confidence 334445555666 99999999999999999999999665542211 123 333443 56678888887764 679999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc-----h-----HHHHHHHHHHcCCeEEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ-----L-----EDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~-----l-----~~~l~~ll~~aGf~~i~w~ 365 (392)
++..++++ .+++.+..+++.+...++|||++++..+....+- . +.++...+. |+++++..
T Consensus 99 ~st~v~~f-L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~ 168 (192)
T PF03848_consen 99 VSTVVFMF-LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYN 168 (192)
T ss_dssp EEESSGGG-S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEE
T ss_pred EEEEEecc-CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEE
Confidence 99888876 5778888999999999999999988765432210 0 344565555 48887753
No 36
>PRK08317 hypothetical protein; Provisional
Probab=99.38 E-value=1e-11 Score=115.58 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=92.8
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhc-----CCccEEEeccCcCCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASR-----GVVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~r-----g~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
+.++.+| ||+|||+|.++..+++.. ..+++ +|++......+.++ ..+.+..+|...+++.+++||+|
T Consensus 17 ~~~~~~v---LdiG~G~G~~~~~~a~~~~~~~~v~~--~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 91 (241)
T PRK08317 17 VQPGDRV---LDVGCGPGNDARELARRVGPEGRVVG--IDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAV 91 (241)
T ss_pred CCCCCEE---EEeCCCCCHHHHHHHHhcCCCcEEEE--EeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEE
Confidence 4444444 999999999999998853 46777 45534444444333 13678888888888888999999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc------c-c-----------------cchHHHHHHHHHHcC
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC------V-G-----------------AQLEDVYVPLIESVG 358 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~------~-~-----------------~~l~~~l~~ll~~aG 358 (392)
++..+++++.+ ...+++++.++|||||.+++.+... . . ......+.++++++|
T Consensus 92 ~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 168 (241)
T PRK08317 92 RSDRVLQHLED---PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAG 168 (241)
T ss_pred EEechhhccCC---HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcC
Confidence 99999998743 4569999999999999998875311 0 0 011345888999999
Q ss_pred CeEEEEEE
Q 047630 359 FNKLKWVV 366 (392)
Q Consensus 359 f~~i~w~~ 366 (392)
|..+....
T Consensus 169 f~~~~~~~ 176 (241)
T PRK08317 169 LTDIEVEP 176 (241)
T ss_pred CCceeEEE
Confidence 98876543
No 37
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.38 E-value=3.4e-12 Score=120.82 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=74.0
Q ss_pred EEEEcCCcchHHHHHHHc----CCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMMER----NITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~----g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
|||+|||+|.++..+++. +..++| +|++..+...+.++ + .+.++++|+..++++ .+|+|++.+++
T Consensus 57 iLDlGcG~G~~~~~l~~~~~~p~~~v~g--vD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l 132 (239)
T TIGR00740 57 VYDLGCSRGAATLSARRNINQPNVKIIG--IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFTL 132 (239)
T ss_pred EEEecCCCCHHHHHHHHhcCCCCCeEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecch
Confidence 499999999999988873 567888 55544454433322 1 367889999988865 48999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
|++ ++.+...++++++|+|||||.|++.+.+
T Consensus 133 ~~~-~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 133 QFL-PPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 885 4455678999999999999999998753
No 38
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.37 E-value=7.6e-13 Score=108.54 Aligned_cols=90 Identities=26% Similarity=0.402 Sum_probs=71.2
Q ss_pred EEEEcCCcchHHHHHHHcC-----CEEEEEecCCCchhHHHHHhcC-----CccEEEeccCcCCCCCCcccEEEEccc-c
Q 047630 240 GLDIGGGVATFAVRMMERN-----ITIVTTSMNLNGPFNNFIASRG-----VVPLYISISQRLPFFDNTLDIVHSMHV-L 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g-----~~vvg~~iD~~a~~~~~aa~rg-----~i~~~~~d~~~Lpf~d~sFDlV~s~~~-l 308 (392)
|||+|||+|..+..+.+.. ..+++ +|++..+...++++. .+.++++|+.++++.+++||+|++... +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~g--vD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIG--VDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEE--EES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEE--EECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 5999999999999999863 67777 555455555554443 478999999999998999999999655 8
Q ss_pred cccCCchhHHHHHHHHHHcccCCc
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGG 332 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG 332 (392)
+| .+++.++.+++++.++|||||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 77 677888999999999999998
No 39
>PRK04266 fibrillarin; Provisional
Probab=99.36 E-value=2.6e-11 Score=114.37 Aligned_cols=136 Identities=12% Similarity=0.084 Sum_probs=88.9
Q ss_pred HHHHHHHH--HhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHH----HHHhcCCccEEEeccCc-
Q 047630 221 LDFSIDEV--LATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNN----FIASRGVVPLYISISQR- 291 (392)
Q Consensus 221 ~~~lI~~l--l~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~----~aa~rg~i~~~~~d~~~- 291 (392)
...++..+ +.+.++.+| ||+|||+|.++..+++.. -.|+++ |++..+.+ .+.++..+.++.+|...
T Consensus 58 ~~~ll~~~~~l~i~~g~~V---lD~G~G~G~~~~~la~~v~~g~V~av--D~~~~ml~~l~~~a~~~~nv~~i~~D~~~~ 132 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKV---LYLGAASGTTVSHVSDIVEEGVVYAV--EFAPRPMRELLEVAEERKNIIPILADARKP 132 (226)
T ss_pred HHHHHhhHhhCCCCCCCEE---EEEccCCCHHHHHHHHhcCCCeEEEE--ECCHHHHHHHHHHhhhcCCcEEEECCCCCc
Confidence 33444434 455566666 999999999999999853 468884 45343333 33333346778888654
Q ss_pred ---CCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE------eecccccchHHHHHHHHHHcCCeEE
Q 047630 292 ---LPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD------HFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 292 ---Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~------~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
.++ .++||+|++... ++.....+++++.|+|||||.|++. ++........+...++++++||+.+
T Consensus 133 ~~~~~l-~~~~D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 133 ERYAHV-VEKVDVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred chhhhc-cccCCEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 122 356999986422 2223345789999999999999993 3333322333445689999999999
Q ss_pred EEEEe
Q 047630 363 KWVVG 367 (392)
Q Consensus 363 ~w~~~ 367 (392)
++...
T Consensus 207 ~~~~l 211 (226)
T PRK04266 207 EVVDL 211 (226)
T ss_pred EEEcC
Confidence 98844
No 40
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.35 E-value=2.4e-11 Score=112.36 Aligned_cols=122 Identities=20% Similarity=0.357 Sum_probs=91.3
Q ss_pred EEEEEcCCcchHHHHHHHcCC---EEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI---TIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~---~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
+|||+|||+|.++..+++... ++++ +|++......+.++ ..+.+..++..++++.+++||+|++.+++++.
T Consensus 42 ~vldiG~G~G~~~~~~~~~~~~~~~~~~--iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 119 (223)
T TIGR01934 42 KVLDVACGTGDLAIELAKSAPDRGKVTG--VDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV 119 (223)
T ss_pred eEEEeCCCCChhHHHHHHhcCCCceEEE--EECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc
Confidence 349999999999999998654 6777 45533444433332 23678889988888888899999999999876
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccc---------------------------------------hHHHHHH
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---------------------------------------LEDVYVP 352 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---------------------------------------l~~~l~~ 352 (392)
.+...+++++.++|+|||++++.++...... ..+++.+
T Consensus 120 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (223)
T TIGR01934 120 ---TDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAA 196 (223)
T ss_pred ---ccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHH
Confidence 3455799999999999999988765332110 1355888
Q ss_pred HHHHcCCeEEEEE
Q 047630 353 LIESVGFNKLKWV 365 (392)
Q Consensus 353 ll~~aGf~~i~w~ 365 (392)
+++++||+.+..+
T Consensus 197 ~l~~aGf~~~~~~ 209 (223)
T TIGR01934 197 MLKEAGFEEVRYR 209 (223)
T ss_pred HHHHcCCccceee
Confidence 9999999987655
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.33 E-value=1.6e-11 Score=114.54 Aligned_cols=122 Identities=21% Similarity=0.265 Sum_probs=89.4
Q ss_pred cEEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHHHHHhcC--CccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 238 RIGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNNFIASRG--VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~~aa~rg--~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
..|||+|||+|.++..+++.+. .+++ +|++......+.++. .+.++.+|...+++++++||+|++..++++..
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~--~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~- 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIA--LDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD- 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEE--EeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc-
Confidence 3459999999999999999764 4566 555444444443332 36788999999999899999999999998863
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeeccccc--------------chHHHHHHHHHHcCCeEEEEE
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--------------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--------------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+...++.++.++|||||.+++..+....- ...+.+.+++.+. |+.+.+.
T Consensus 113 --~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 113 --DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 34579999999999999999886533210 0134577778777 7766554
No 42
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.33 E-value=1.7e-11 Score=120.24 Aligned_cols=123 Identities=17% Similarity=0.270 Sum_probs=87.8
Q ss_pred cEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 238 RIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
+.|||||||+|.++..++++.+.+.++.+|. +...+. +.+.+ .++++.+|....++++ +|+|++.+++|+
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~ 227 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILYS 227 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhhc
Confidence 3459999999999999999754433333555 333332 23333 3678888987666643 699999999988
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccccc------------------------hHHHHHHHHHHcCCeEEEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ------------------------LEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~------------------------l~~~l~~ll~~aGf~~i~w 364 (392)
|.+ +....++++++++|||||++++.++...... ..++|.++++++||+.++.
T Consensus 228 ~~~-~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 228 ANE-QLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred CCh-HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEe
Confidence 743 4446799999999999999988876321110 0467999999999998864
No 43
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.31 E-value=3.2e-11 Score=112.80 Aligned_cols=126 Identities=11% Similarity=0.012 Sum_probs=88.7
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH-HHhcC-----------------CccEEEeccCcCCC
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF-IASRG-----------------VVPLYISISQRLPF 294 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~-aa~rg-----------------~i~~~~~d~~~Lpf 294 (392)
+++++ ||+|||.|..+..|+++|.+|+|+|++. ...+. +++.+ .++++++|+..++.
T Consensus 34 ~~~rv---Ld~GCG~G~da~~LA~~G~~V~gvD~S~--~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 34 AGARV---FVPLCGKSLDLAWLAEQGHRVLGVELSE--IAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCeE---EEeCCCchhHHHHHHhCCCeEEEEeCCH--HHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 44556 9999999999999999999999955443 33332 22221 26778889888764
Q ss_pred C-CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc--------chHHHHHHHHHHcCCeEEEEE
Q 047630 295 F-DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 295 ~-d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
. .+.||.|+...+++|+ +++..+.+++.+.++|||||++++..+..... -..+++.+.+.. +|......
T Consensus 109 ~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred ccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcC-CceEEEEe
Confidence 2 4679999999888884 67777889999999999999876665532111 115557766653 35554444
No 44
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.31 E-value=1.5e-11 Score=108.24 Aligned_cols=95 Identities=20% Similarity=0.360 Sum_probs=74.7
Q ss_pred EEEEcCCcchHHHHHHH-c--CCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCC--CCCCcccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMME-R--NITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLP--FFDNTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~-~--g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lp--f~d~sFDlV~s~~~l 308 (392)
|||+|||+|.++..+++ . +.+++|+| ++..+.+.+.+ .+ .++++++|+.+++ +. +.||+|++..++
T Consensus 7 iLDlGcG~G~~~~~l~~~~~~~~~i~gvD--~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l 83 (152)
T PF13847_consen 7 ILDLGCGTGRLLIQLAKELNPGAKIIGVD--ISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVL 83 (152)
T ss_dssp EEEET-TTSHHHHHHHHHSTTTSEEEEEE--SSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTG
T ss_pred EEEecCcCcHHHHHHHHhcCCCCEEEEEE--CcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCch
Confidence 49999999999999994 3 67888855 54455543333 33 3789999999887 65 899999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
+++ .+...+++++.++||+||.+++.++.
T Consensus 84 ~~~---~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 84 HHF---PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGT---SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhc---cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 887 44457999999999999999999876
No 45
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=1.4e-11 Score=118.83 Aligned_cols=131 Identities=24% Similarity=0.308 Sum_probs=98.4
Q ss_pred HHHhhCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHH----HHHhcCC---ccEEEeccCcCCCCCCc
Q 047630 227 EVLATKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNN----FIASRGV---VPLYISISQRLPFFDNT 298 (392)
Q Consensus 227 ~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d~~~Lpf~d~s 298 (392)
+.+.+.+|.++ ||||||.|.++.+++++ +++|+|++++. .... .++++|. +++...|..++. +.
T Consensus 66 ~kl~L~~G~~l---LDiGCGWG~l~~~aA~~y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~ 137 (283)
T COG2230 66 EKLGLKPGMTL---LDIGCGWGGLAIYAAEEYGVTVVGVTLSE--EQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EP 137 (283)
T ss_pred HhcCCCCCCEE---EEeCCChhHHHHHHHHHcCCEEEEeeCCH--HHHHHHHHHHHHcCCCcccEEEeccccccc---cc
Confidence 34557788888 99999999999999996 79999976654 3332 3455563 456666666553 45
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc-----------------cch--HHHHHHHHHHcCC
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG-----------------AQL--EDVYVPLIESVGF 359 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~-----------------~~l--~~~l~~ll~~aGf 359 (392)
||-|++...++|+ ..+....+++.++++|+|||.+++..+.... ..+ ..++.+..+++||
T Consensus 138 fDrIvSvgmfEhv-g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~ 216 (283)
T COG2230 138 FDRIVSVGMFEHV-GKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGF 216 (283)
T ss_pred cceeeehhhHHHh-CcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCc
Confidence 9999999999996 4455678999999999999999877654333 122 3667777899999
Q ss_pred eEEEEEE
Q 047630 360 NKLKWVV 366 (392)
Q Consensus 360 ~~i~w~~ 366 (392)
.+..|..
T Consensus 217 ~v~~~~~ 223 (283)
T COG2230 217 VVLDVES 223 (283)
T ss_pred EEehHhh
Confidence 9888763
No 46
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.31 E-value=2.5e-11 Score=111.75 Aligned_cols=141 Identities=18% Similarity=0.215 Sum_probs=90.1
Q ss_pred cHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcc
Q 047630 220 GLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTL 299 (392)
Q Consensus 220 ~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sF 299 (392)
.++.+|+.+....+. .+|-|+|||.+.+|..+. .+.+|.. .|+.+. + -.++..|+.++|+++++.
T Consensus 59 Pvd~iI~~l~~~~~~---~viaD~GCGdA~la~~~~-~~~~V~S--fDLva~-------n--~~Vtacdia~vPL~~~sv 123 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKS---LVIADFGCGDAKLAKAVP-NKHKVHS--FDLVAP-------N--PRVTACDIANVPLEDESV 123 (219)
T ss_dssp HHHHHHHHHCTS-TT---S-EEEES-TT-HHHHH---S---EEE--EESS-S-------S--TTEEES-TTS-S--TT-E
T ss_pred cHHHHHHHHHhcCCC---EEEEECCCchHHHHHhcc-cCceEEE--eeccCC-------C--CCEEEecCccCcCCCCce
Confidence 478888887644332 235999999999997754 5567877 444121 1 257788999999999999
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccce
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREM 379 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ 379 (392)
|+|++..+|.. .++..++.|+.|+|||||.|+|.+....-++. +.+.+.++..||+...-. ..+..
T Consensus 124 Dv~VfcLSLMG----Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~-~~F~~~~~~~GF~~~~~d---------~~n~~ 189 (219)
T PF05148_consen 124 DVAVFCLSLMG----TNWPDFIREANRVLKPGGILKIAEVKSRFENV-KQFIKALKKLGFKLKSKD---------ESNKH 189 (219)
T ss_dssp EEEEEES---S----S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-H-HHHHHHHHCTTEEEEEEE-----------STT
T ss_pred eEEEEEhhhhC----CCcHHHHHHHHheeccCcEEEEEEecccCcCH-HHHHHHHHHCCCeEEecc---------cCCCe
Confidence 99999988866 45567999999999999999999987766666 448888999999988643 12345
Q ss_pred eeEEEEEcCC
Q 047630 380 YLSALLEKPF 389 (392)
Q Consensus 380 ylsai~~Kp~ 389 (392)
|+...++|..
T Consensus 190 F~~f~F~K~~ 199 (219)
T PF05148_consen 190 FVLFEFKKIR 199 (219)
T ss_dssp EEEEEEEE-S
T ss_pred EEEEEEEEcC
Confidence 5556777753
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.29 E-value=1.5e-11 Score=127.70 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=93.9
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccC--cCCCCCCcccEEEEcccccccC
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQ--RLPFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~--~Lpf~d~sFDlV~s~~~l~~~~ 312 (392)
.|||||||+|.++..+++.+.+++++| ++..+.+.+.+. ..+.++++|+. .+++++++||+|++..+++|+
T Consensus 40 ~vLDlGcG~G~~~~~la~~~~~v~giD--~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l- 116 (475)
T PLN02336 40 SVLELGAGIGRFTGELAKKAGQVIALD--FIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYL- 116 (475)
T ss_pred EEEEeCCCcCHHHHHHHhhCCEEEEEe--CCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhC-
Confidence 459999999999999999888898855 534444433322 13678888875 567888999999999999886
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEEeeccccc------------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA------------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~------------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
++..+..++++++|+|||||++++.+...... .....|.+++.++||........
T Consensus 117 ~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 183 (475)
T PLN02336 117 SDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSF 183 (475)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEE
Confidence 44556789999999999999998876322111 11567999999999877655433
No 48
>PRK06202 hypothetical protein; Provisional
Probab=99.29 E-value=5.3e-11 Score=112.13 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=84.4
Q ss_pred cEEEEEcCCcchHHHHHHH----cC--CEEEEEecCCCchhHHHHHhcC---CccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 238 RIGLDIGGGVATFAVRMME----RN--ITIVTTSMNLNGPFNNFIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~----~g--~~vvg~~iD~~a~~~~~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
..|||+|||+|.++..|++ .+ .+++| +|++..+.+.+.++. .+.+.+.+...+++.+++||+|++++++
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTA--IDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEE--EcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 3459999999999888875 34 36777 666555555444431 2567777777788778899999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeeccc----------------------ccc-------hHHHHHHHHHHcCC
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV----------------------GAQ-------LEDVYVPLIESVGF 359 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~----------------------~~~-------l~~~l~~ll~~aGf 359 (392)
||+.+ +.+..++++++|++| |.+++.++... +.. ..+++.+++++ ||
T Consensus 140 hh~~d-~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 140 HHLDD-AEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred ecCCh-HHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 99744 446789999999998 45545443211 000 15678888888 99
Q ss_pred eEEE
Q 047630 360 NKLK 363 (392)
Q Consensus 360 ~~i~ 363 (392)
++..
T Consensus 216 ~~~~ 219 (232)
T PRK06202 216 RVER 219 (232)
T ss_pred eEEe
Confidence 8654
No 49
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.28 E-value=1.2e-10 Score=105.50 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=90.8
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcC-CccEEEeccCcCCCCCC
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRG-VVPLYISISQRLPFFDN 297 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg-~i~~~~~d~~~Lpf~d~ 297 (392)
.++...+...+++++ ||+|||+|.++..+++.+.+++++|++. .+.+.+. ..+ .+.++.+|....+ .+
T Consensus 9 ~~l~~~l~~~~~~~v---LdlG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~ 81 (179)
T TIGR00537 9 LLLEANLRELKPDDV---LEIGAGTGLVAIRLKGKGKCILTTDINP--FAVKELRENAKLNNVGLDVVMTDLFKGV--RG 81 (179)
T ss_pred HHHHHHHHhcCCCeE---EEeCCChhHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEccccccc--CC
Confidence 344444444444555 9999999999999999888888855443 4333222 222 2566777765543 45
Q ss_pred cccEEEEcccccccCCc------------------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCC
Q 047630 298 TLDIVHSMHVLSNWIPT------------------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGF 359 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~------------------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf 359 (392)
+||+|+++..+++..+. ..++.++.++.|+|||||.+++....... ...+.+.+++.||
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~---~~~~~~~l~~~gf 158 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG---EPDTFDKLDERGF 158 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC---hHHHHHHHHhCCC
Confidence 89999999877654321 12467899999999999999887654332 2347778999999
Q ss_pred eEEEEE
Q 047630 360 NKLKWV 365 (392)
Q Consensus 360 ~~i~w~ 365 (392)
......
T Consensus 159 ~~~~~~ 164 (179)
T TIGR00537 159 RYEIVA 164 (179)
T ss_pred eEEEEE
Confidence 876654
No 50
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.28 E-value=4.4e-11 Score=111.64 Aligned_cols=123 Identities=14% Similarity=0.173 Sum_probs=89.5
Q ss_pred cEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 238 RIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
..|||+|||+|.++..+++.+..++|+|++ ..+...+.++ + .+.+.++++..++ ++||+|++..+++|
T Consensus 57 ~~vLDiGcG~G~~~~~la~~~~~v~gvD~s--~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKRGAIVKAVDIS--EQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIH 131 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHh
Confidence 345999999999999999998899885544 3444333322 2 3678888887765 78999999999988
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeec-------------cccc-------chHHHHHHHHHHcCCeEEEEEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFF-------------CVGA-------QLEDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~-------------~~~~-------~l~~~l~~ll~~aGf~~i~w~~ 366 (392)
+ ++..+..+++++.+++++|+++.+.... .... -..+++.++++++||+++.-..
T Consensus 132 ~-~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 132 Y-PASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred C-CHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence 5 4456778999999999988777654211 0000 0156799999999999987653
No 51
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.26 E-value=3.4e-11 Score=115.00 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=72.0
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhcC-CccEEEeccCcCCCCCCcccEEEEcccccccCCch
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
.|||||||+|.++..+++. +..+++ +|++..+...+.++. .+.++.+|...+. ++++||+|+++.+++++.
T Consensus 34 ~vLDiGcG~G~~~~~la~~~~~~~v~g--vD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~--- 107 (258)
T PRK01683 34 YVVDLGCGPGNSTELLVERWPAARITG--IDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLP--- 107 (258)
T ss_pred EEEEEcccCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCC---
Confidence 3499999999999999985 467888 555444444444432 3678888887765 456999999999998763
Q ss_pred hHHHHHHHHHHcccCCcEEEEEe
Q 047630 316 LLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+...+++++.++|||||.+++..
T Consensus 108 d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 108 DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CHHHHHHHHHHhcCCCcEEEEEC
Confidence 34579999999999999998863
No 52
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.25 E-value=1e-11 Score=117.22 Aligned_cols=118 Identities=12% Similarity=0.141 Sum_probs=86.2
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC------------CccEEEeccCcCCCCCCcccEEEEccc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG------------VVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg------------~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
|||+|||+|.++..|++.|.+|+| +|++.++.+.+.+.. .+++.+.+.+.+. +.||+|+|+.+
T Consensus 93 ilDvGCGgGLLSepLArlga~V~G--ID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsev 167 (282)
T KOG1270|consen 93 ILDVGCGGGLLSEPLARLGAQVTG--IDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEV 167 (282)
T ss_pred EEEeccCccccchhhHhhCCeeEe--ecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHH
Confidence 599999999999999999999999 666445544443331 1334444555543 45999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeecccc------------------------cch--HHHHHHHHHHcCCeE
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG------------------------AQL--EDVYVPLIESVGFNK 361 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~------------------------~~l--~~~l~~ll~~aGf~~ 361 (392)
++|..+ +..++..+.+.|||||.++++...... +.. +.++..+++..++.+
T Consensus 168 leHV~d---p~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v 244 (282)
T KOG1270|consen 168 LEHVKD---PQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQV 244 (282)
T ss_pred HHHHhC---HHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcch
Confidence 999844 445999999999999999998753211 111 666888888888777
Q ss_pred EEEE
Q 047630 362 LKWV 365 (392)
Q Consensus 362 i~w~ 365 (392)
..|.
T Consensus 245 ~~v~ 248 (282)
T KOG1270|consen 245 NDVV 248 (282)
T ss_pred hhhh
Confidence 6665
No 53
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.24 E-value=1.4e-10 Score=106.44 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=90.9
Q ss_pred EEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhcCCccEEEeccCc-C-CCCCCcccEEEEcccccccCCchh
Q 047630 240 GLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASRGVVPLYISISQR-L-PFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~-L-pf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
|||+|||+|.++..+++. +..+++ +|++..+.+.+.+++ ++++++++.. + ++++++||+|+++.+++|+.+
T Consensus 17 iLDiGcG~G~~~~~l~~~~~~~~~g--iD~s~~~i~~a~~~~-~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d--- 90 (194)
T TIGR02081 17 VLDLGCGDGELLALLRDEKQVRGYG--IEIDQDGVLACVARG-VNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN--- 90 (194)
T ss_pred EEEeCCCCCHHHHHHHhccCCcEEE--EeCCHHHHHHHHHcC-CeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC---
Confidence 499999999999999764 556666 566445545555555 6888888765 4 477889999999999998743
Q ss_pred HHHHHHHHHHcccCCcEEEEEee--------------cc-------c--c-----cchHHHHHHHHHHcCCeEEEEEEee
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHF--------------FC-------V--G-----AQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~--------------~~-------~--~-----~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
...+++++.|+++++. +.+..+ .. . . -...+++.++++++||+.++.....
T Consensus 91 ~~~~l~e~~r~~~~~i-i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 91 PEEILDEMLRVGRHAI-VSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred HHHHHHHHHHhCCeEE-EEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEec
Confidence 4468999999887542 211000 00 0 0 0116679999999999999887665
Q ss_pred ccCCCCccccee
Q 047630 369 KLDRGPELREMY 380 (392)
Q Consensus 369 k~d~~~~~~e~y 380 (392)
.-..+.+...||
T Consensus 170 ~~~~~~~~~~~~ 181 (194)
T TIGR02081 170 VDGRGGREVRWF 181 (194)
T ss_pred cccccccccccC
Confidence 444444444444
No 54
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.3e-10 Score=113.00 Aligned_cols=118 Identities=20% Similarity=0.249 Sum_probs=82.7
Q ss_pred cEEEEEcCCcchHHHHHHHcCCE-EEEEecCCCchhHH--HHHhcCCccE--EEeccCcCCCCC-CcccEEEEccccccc
Q 047630 238 RIGLDIGGGVATFAVRMMERNIT-IVTTSMNLNGPFNN--FIASRGVVPL--YISISQRLPFFD-NTLDIVHSMHVLSNW 311 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~-vvg~~iD~~a~~~~--~aa~rg~i~~--~~~d~~~Lpf~d-~sFDlV~s~~~l~~~ 311 (392)
++|||+|||+|.+++..++.|+. ++|+|+|.-+.... ++..++ ++. ............ +.||+|+++-.-.
T Consensus 164 ~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~~~~~~~~~~~~~~~DvIVANILA~-- 240 (300)
T COG2264 164 KTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGFLLLEVPENGPFDVIVANILAE-- 240 (300)
T ss_pred CEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcC-CchhhhcccccchhhcccCcccEEEehhhHH--
Confidence 34499999999999999999876 99977775332222 333444 331 111122223333 5899999986332
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
-+..+..++.+.|||||+++++...... .+.+.+.+++.||+.+...
T Consensus 241 ----vl~~La~~~~~~lkpgg~lIlSGIl~~q---~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 241 ----VLVELAPDIKRLLKPGGRLILSGILEDQ---AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred ----HHHHHHHHHHHHcCCCceEEEEeehHhH---HHHHHHHHHhCCCeEeEEE
Confidence 2347899999999999999999876644 3447778889999999876
No 55
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.23 E-value=1.3e-10 Score=117.69 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=88.0
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhc--C-CccEEEeccCcCCCCCCcccEEEEc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASR--G-VVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~r--g-~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
.+.++.++ ||||||+|.++..+++. +.+|++ +|++..+.+.+.++ + .+.+...|...+ +++||.|++.
T Consensus 164 ~l~~g~rV---LDIGcG~G~~a~~la~~~g~~V~g--iDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~ 235 (383)
T PRK11705 164 QLKPGMRV---LDIGCGWGGLARYAAEHYGVSVVG--VTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSV 235 (383)
T ss_pred CCCCCCEE---EEeCCCccHHHHHHHHHCCCEEEE--EeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEe
Confidence 34555555 99999999999999984 788888 45544555444443 2 245666676654 4789999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc----------------ch--HHHHHHHHHHcCCeEEEEE
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA----------------QL--EDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~----------------~l--~~~l~~ll~~aGf~~i~w~ 365 (392)
.+++|+ .....+.+++++.|+|||||++++..+..... .+ ..++..+++ .||.+..|.
T Consensus 236 ~~~ehv-g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~ 311 (383)
T PRK11705 236 GMFEHV-GPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWH 311 (383)
T ss_pred CchhhC-ChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEe
Confidence 999885 44556789999999999999998876432111 11 344555555 588888776
No 56
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.22 E-value=1.6e-10 Score=108.41 Aligned_cols=129 Identities=12% Similarity=0.018 Sum_probs=88.9
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH-HHhcC-----------------CccEEEeccCcCCC
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF-IASRG-----------------VVPLYISISQRLPF 294 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~-aa~rg-----------------~i~~~~~d~~~Lpf 294 (392)
+++++ ||+|||.|..+..|+++|.+|+|+|++. ...+. +.+++ .+.+.++|+..++.
T Consensus 37 ~~~rv---L~~gCG~G~da~~LA~~G~~V~avD~s~--~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 37 AGSRV---LVPLCGKSLDMLWLAEQGHEVLGVELSE--LAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCeE---EEeCCCChHhHHHHHhCCCeEEEEccCH--HHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 44555 9999999999999999999999955443 33332 22332 25677888887754
Q ss_pred C-CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEE-Eeeccccc-------chHHHHHHHHHHcCCeEEEEE
Q 047630 295 F-DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL-DHFFCVGA-------QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 295 ~-d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii-~~~~~~~~-------~l~~~l~~ll~~aGf~~i~w~ 365 (392)
. ...||+|+...+++++ +++..+.+++.+.++|||||++++ ...+.... -..+++.+.+.. +|++....
T Consensus 112 ~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 112 ADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLE 189 (218)
T ss_pred ccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEee
Confidence 3 2589999999888885 777788999999999999997544 33332111 115667777753 26666555
Q ss_pred Eee
Q 047630 366 VGR 368 (392)
Q Consensus 366 ~~~ 368 (392)
...
T Consensus 190 ~~~ 192 (218)
T PRK13255 190 RQD 192 (218)
T ss_pred ecc
Confidence 433
No 57
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.22 E-value=3.5e-11 Score=109.96 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=74.0
Q ss_pred EEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHH----HHhcC--Ccc-EEEeccCcCC-CCCCcccEEEEccccccc
Q 047630 241 LDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNF----IASRG--VVP-LYISISQRLP-FFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 241 LDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~----aa~rg--~i~-~~~~d~~~Lp-f~d~sFDlV~s~~~l~~~ 311 (392)
|+||||||..-.++-- ++..|++ +|+++.+.+. ++++. .+. |++++.+.+| ++++++|.|++.+++...
T Consensus 81 LEvgcGtG~Nfkfy~~~p~~svt~--lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv 158 (252)
T KOG4300|consen 81 LEVGCGTGANFKFYPWKPINSVTC--LDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSV 158 (252)
T ss_pred EEecccCCCCcccccCCCCceEEE--eCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEecc
Confidence 9999999997766653 6778877 7775555543 22322 234 8899999998 799999999999999876
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
++..+.|+|+.|+|||||++++.+.
T Consensus 159 ---e~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 159 ---EDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 5555799999999999999977764
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.22 E-value=2.5e-10 Score=104.04 Aligned_cols=120 Identities=15% Similarity=0.209 Sum_probs=80.6
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHH----hcC--CccEEEeccCcCCCCCCcccE
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~Lpf~d~sFDl 301 (392)
.+.++.++ ||+|||+|.++..+++.+ ..++++| ++....+.+. +.+ .+.++.++.. .++ .++||+
T Consensus 28 ~~~~~~~v---LDiG~G~G~~~~~la~~~~~~~v~~vD--~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~ 100 (187)
T PRK08287 28 ELHRAKHL---IDVGAGTGSVSIEAALQFPSLQVTAIE--RNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADA 100 (187)
T ss_pred CCCCCCEE---EEECCcCCHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCE
Confidence 34444444 999999999999998864 4777755 4334333222 222 2566666653 233 457999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
|++.....+ +..++.++.++|||||++++...... + .+.+.+++++.||+.++..
T Consensus 101 v~~~~~~~~------~~~~l~~~~~~Lk~gG~lv~~~~~~~--~-~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 101 IFIGGSGGN------LTAIIDWSLAHLHPGGRLVLTFILLE--N-LHSALAHLEKCGVSELDCV 155 (187)
T ss_pred EEECCCccC------HHHHHHHHHHhcCCCeEEEEEEecHh--h-HHHHHHHHHHCCCCcceEE
Confidence 998765433 35689999999999999988654321 2 2447778999999776644
No 59
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.21 E-value=5.4e-11 Score=110.19 Aligned_cols=120 Identities=19% Similarity=0.165 Sum_probs=83.0
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHh----cC--CccEEEecc-CcCC--CCCCcccEEEEcc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIAS----RG--VVPLYISIS-QRLP--FFDNTLDIVHSMH 306 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~-~~Lp--f~d~sFDlV~s~~ 306 (392)
.+|||+|||+|.++..+++. +..++++| ++..+.+.+.+ .+ .+.++++|+ +.++ +++++||+|++.+
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD--~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIE--VHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEE--echHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 34599999999999999885 45677755 54444443322 22 367889998 7776 7788999999876
Q ss_pred cccccCC-----chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEE
Q 047630 307 VLSNWIP-----TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 307 ~l~~~~~-----~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
....... ....+.++++++++|||||.|++.. ........+.+.+++.|+...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~---~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT---DWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc---CCHHHHHHHHHHHHhCccccc
Confidence 5422111 1123578999999999999998864 234445557778888886443
No 60
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.21 E-value=9.8e-12 Score=101.25 Aligned_cols=89 Identities=22% Similarity=0.363 Sum_probs=50.6
Q ss_pred EEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCcCC-C-CCCcccEEEEcccccc
Q 047630 241 LDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQRLP-F-FDNTLDIVHSMHVLSN 310 (392)
Q Consensus 241 LDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~Lp-f-~d~sFDlV~s~~~l~~ 310 (392)
||||||+|.++..+.+. ..+++++|++. .+.+. ..+.+. ............ . ..++||+|++..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISP--SMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSS--STTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999987 66777755544 44422 222221 122222222221 1 2259999999999999
Q ss_pred cCCchhHHHHHHHHHHcccCCcEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~l 334 (392)
+ ++++.++++++++|||||+|
T Consensus 79 l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-HHHHHHHHTTT-TSS-EE
T ss_pred h---hhHHHHHHHHHHHcCCCCCC
Confidence 8 66678999999999999986
No 61
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.21 E-value=9.9e-11 Score=107.98 Aligned_cols=133 Identities=20% Similarity=0.258 Sum_probs=95.9
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCC-ccEEEec-cCcCCCCCCcccEEEEc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGV-VPLYISI-SQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~-i~~~~~d-~~~Lpf~d~sFDlV~s~ 305 (392)
++.+.. ..-..|||||||+|..+..+.+.|...+| +|++..+.+.+.++.+ -.++.+| .+.+||..++||.|++.
T Consensus 43 LLalp~-~~~~~iLDIGCGsGLSg~vL~~~Gh~wiG--vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 43 LLALPG-PKSGLILDIGCGSGLSGSVLSDSGHQWIG--VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred HhhCCC-CCCcEEEEeccCCCcchheeccCCceEEe--ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEe
Confidence 343443 35566799999999999999999988888 5665566665555432 1466665 57899999999999998
Q ss_pred cccccc--------CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCe---EEEE
Q 047630 306 HVLSNW--------IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFN---KLKW 364 (392)
Q Consensus 306 ~~l~~~--------~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~---~i~w 364 (392)
.++... .+...+..++..++.+|++|+..++.-+.. .+.-.+.+.....++||. +|.|
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe-n~~q~d~i~~~a~~aGF~GGlvVd~ 188 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE-NEAQIDMIMQQAMKAGFGGGLVVDW 188 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc-chHHHHHHHHHHHhhccCCceeeec
Confidence 777422 234456778889999999999998885444 333345566677778874 5665
No 62
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.20 E-value=7.9e-11 Score=110.87 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=101.2
Q ss_pred cHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcc
Q 047630 220 GLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTL 299 (392)
Q Consensus 220 ~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sF 299 (392)
.++.+|+.+-...... +|-|+|||.+.+|. .....|+. +|+.+ .+ -.++..|+.++|.+|++.
T Consensus 167 Pld~ii~~ik~r~~~~---vIaD~GCGEakiA~---~~~~kV~S--fDL~a-------~~--~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 167 PLDVIIRKIKRRPKNI---VIADFGCGEAKIAS---SERHKVHS--FDLVA-------VN--ERVIACDMRNVPLEDESV 229 (325)
T ss_pred hHHHHHHHHHhCcCce---EEEecccchhhhhh---ccccceee--eeeec-------CC--CceeeccccCCcCccCcc
Confidence 4777887776433222 34999999999886 33445666 44411 11 257788999999999999
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccce
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREM 379 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ 379 (392)
|++++..+|.. .++..++.|++|+||+||.+||.+....-.+... +.+.+...||....-.. .+..
T Consensus 230 DvaV~CLSLMg----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~-f~r~l~~lGF~~~~~d~---------~n~~ 295 (325)
T KOG3045|consen 230 DVAVFCLSLMG----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKG-FVRALTKLGFDVKHKDV---------SNKY 295 (325)
T ss_pred cEEEeeHhhhc----ccHHHHHHHHHHHhccCceEEEEehhhhcccHHH-HHHHHHHcCCeeeehhh---------hcce
Confidence 99999888765 5667899999999999999999998776666654 88899999998765442 2344
Q ss_pred eeEEEEEcCC
Q 047630 380 YLSALLEKPF 389 (392)
Q Consensus 380 ylsai~~Kp~ 389 (392)
|....|+|+.
T Consensus 296 F~lfefkK~~ 305 (325)
T KOG3045|consen 296 FTLFEFKKTP 305 (325)
T ss_pred EEEEEEecCC
Confidence 4446677753
No 63
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.20 E-value=1e-10 Score=112.84 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=72.8
Q ss_pred EEEEEcCCcch----HHHHHHHc-------CCEEEEEecCCCchhHHHHHhc----------------------------
Q 047630 239 IGLDIGGGVAT----FAVRMMER-------NITIVTTSMNLNGPFNNFIASR---------------------------- 279 (392)
Q Consensus 239 ~VLDIGCGtG~----~a~~La~~-------g~~vvg~~iD~~a~~~~~aa~r---------------------------- 279 (392)
.|+|+|||+|. ++..+++. +..++|+|+| ..+.+.+.+.
T Consensus 102 ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis--~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 102 RIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID--LKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred EEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC--HHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 45999999996 55556553 3568885544 3444333221
Q ss_pred -----CCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 280 -----GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 280 -----g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+.|.++|....++++++||+|+|.++++++ +++....++++++++|+|||+|++.+
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 13678888888888778999999999999886 55666789999999999999999875
No 64
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.20 E-value=3.3e-10 Score=103.84 Aligned_cols=130 Identities=19% Similarity=0.147 Sum_probs=87.9
Q ss_pred EEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 240 GLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
|||+|||+|..+..++. .+.+|+++| ++..+.+ .+.+.+. ++++.++...++. +++||+|++...
T Consensus 49 VLDiGcGtG~~al~la~~~~~~~V~giD--~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~---- 121 (187)
T PRK00107 49 VLDVGSGAGFPGIPLAIARPELKVTLVD--SLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV---- 121 (187)
T ss_pred EEEEcCCCCHHHHHHHHHCCCCeEEEEe--CcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc----
Confidence 49999999999998886 456788854 5334333 2233332 7888999888876 789999998642
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEc
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEK 387 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~K 387 (392)
..++.++++++++|||||++++..... ....+.++.+..|....+.-..+-. .-.++.++ .+.+|
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~ 186 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD----PEEEIAELPKALGGKVEEVIELTLP---GLDGERHL-VIIRK 186 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC----hHHHHHHHHHhcCceEeeeEEEecC---CCCCcEEE-EEEec
Confidence 234569999999999999999886442 2344666778788776544333221 12345555 45665
No 65
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.20 E-value=3.2e-11 Score=111.83 Aligned_cols=143 Identities=17% Similarity=0.228 Sum_probs=105.4
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCc-cEEEeccCcC-C-CCCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVV-PLYISISQRL-P-FFDN 297 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i-~~~~~d~~~L-p-f~d~ 297 (392)
+-..+.+++.....+..+.+||+|||||..+..+..+-....| +|++..+.+.+.++|.. .+.+++...+ + ..++
T Consensus 110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltG--vDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~e 187 (287)
T COG4976 110 VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTG--VDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQE 187 (287)
T ss_pred cHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccC--CchhHHHHHHHHhccchHHHHHHHHHHHhhhccCC
Confidence 3344555554433455888899999999999999998777877 67767777888888852 3445554432 2 4567
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee-cccccc-----------hHHHHHHHHHHcCCeEEEEE
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF-FCVGAQ-----------LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~-~~~~~~-----------l~~~l~~ll~~aGf~~i~w~ 365 (392)
.||+|.+..++..+ ..++.++.-+.+.|+|||.|.++.- .+.+.. -+..++.+++..||+.|..+
T Consensus 188 r~DLi~AaDVl~Yl---G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 188 RFDLIVAADVLPYL---GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred cccchhhhhHHHhh---cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 89999999999888 6667799999999999999988752 111111 15567889999999999887
Q ss_pred Eee
Q 047630 366 VGR 368 (392)
Q Consensus 366 ~~~ 368 (392)
...
T Consensus 265 ~tt 267 (287)
T COG4976 265 DTT 267 (287)
T ss_pred ccc
Confidence 655
No 66
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.19 E-value=1.8e-10 Score=110.11 Aligned_cols=138 Identities=20% Similarity=0.251 Sum_probs=87.9
Q ss_pred HHHHHHHHhh-CCCCcccEEEEEcCCcchHHHHHHHcCCE-EEEEecCCCchhHHHHHh----cCCccEEEeccCcCCCC
Q 047630 222 DFSIDEVLAT-KKPGTIRIGLDIGGGVATFAVRMMERNIT-IVTTSMNLNGPFNNFIAS----RGVVPLYISISQRLPFF 295 (392)
Q Consensus 222 ~~lI~~ll~l-~~~~~ir~VLDIGCGtG~~a~~La~~g~~-vvg~~iD~~a~~~~~aa~----rg~i~~~~~d~~~Lpf~ 295 (392)
...++.+... .++.++ ||+|||+|.++..+++.+.. ++++|+| ....+.+.+ ++. . +...++..
T Consensus 107 ~~~l~~l~~~~~~~~~V---LDiGcGsG~l~i~~~~~g~~~v~giDis--~~~l~~A~~n~~~~~~-~----~~~~~~~~ 176 (250)
T PRK00517 107 RLCLEALEKLVLPGKTV---LDVGCGSGILAIAAAKLGAKKVLAVDID--PQAVEAARENAELNGV-E----LNVYLPQG 176 (250)
T ss_pred HHHHHHHHhhcCCCCEE---EEeCCcHHHHHHHHHHcCCCeEEEEECC--HHHHHHHHHHHHHcCC-C----ceEEEccC
Confidence 3344444332 344445 99999999999988887765 8885544 334333322 232 1 11112222
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCc
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPE 375 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~ 375 (392)
+.+||+|+++... ..+..++.++.++|||||++++..+.... .+.+.+.+++.||+.++.. .
T Consensus 177 ~~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lilsgi~~~~---~~~v~~~l~~~Gf~~~~~~---------~ 238 (250)
T PRK00517 177 DLKADVIVANILA------NPLLELAPDLARLLKPGGRLILSGILEEQ---ADEVLEAYEEAGFTLDEVL---------E 238 (250)
T ss_pred CCCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEEECcHhh---HHHHHHHHHHCCCEEEEEE---------E
Confidence 3379999987543 23456899999999999999998765432 3457788999999988654 2
Q ss_pred ccceeeEEEEEcC
Q 047630 376 LREMYLSALLEKP 388 (392)
Q Consensus 376 ~~e~ylsai~~Kp 388 (392)
.++|. ..+++|+
T Consensus 239 ~~~W~-~~~~~~~ 250 (250)
T PRK00517 239 RGEWV-ALVGKKK 250 (250)
T ss_pred eCCEE-EEEEEeC
Confidence 34554 4677774
No 67
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.19 E-value=2.5e-10 Score=106.72 Aligned_cols=147 Identities=17% Similarity=0.323 Sum_probs=101.5
Q ss_pred EEEEcCCcchHHHHHHHc--C--CEEEEEecCCCchhHHHHHhcC-----CccEEEecc----CcCCCCCCcccEEEEcc
Q 047630 240 GLDIGGGVATFAVRMMER--N--ITIVTTSMNLNGPFNNFIASRG-----VVPLYISIS----QRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g--~~vvg~~iD~~a~~~~~aa~rg-----~i~~~~~d~----~~Lpf~d~sFDlV~s~~ 306 (392)
||+||||.|.....+.+- + ..+++ .|.++...+...++. .+...+.|. ..-|...+++|+|++++
T Consensus 75 ilEvGCGvGNtvfPll~~~~n~~l~v~a--cDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 75 ILEVGCGVGNTVFPLLKTSPNNRLKVYA--CDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred heeeccCCCcccchhhhcCCCCCeEEEE--cCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 499999999988888773 3 45666 666444443333321 122222221 12366789999999999
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc---------------------ccch-----HHHHHHHHHHcCCe
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV---------------------GAQL-----EDVYVPLIESVGFN 360 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~---------------------~~~l-----~~~l~~ll~~aGf~ 360 (392)
+|.. +.++.+..++.+++++|||||.+++.++... ++.. .+++.+++.++||.
T Consensus 153 vLSA-i~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 153 VLSA-IHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EEec-cChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 9988 5667778999999999999999999986321 1111 67799999999998
Q ss_pred EEEEEEee----ccCCCCcccceeeEEEEEcCC
Q 047630 361 KLKWVVGR----KLDRGPELREMYLSALLEKPF 389 (392)
Q Consensus 361 ~i~w~~~~----k~d~~~~~~e~ylsai~~Kp~ 389 (392)
.++-.+.. ...++-....+|+.++|+||.
T Consensus 232 ~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~ 264 (264)
T KOG2361|consen 232 EVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL 264 (264)
T ss_pred hhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence 76554333 222234566888899999984
No 68
>PRK06922 hypothetical protein; Provisional
Probab=99.19 E-value=7.6e-11 Score=124.70 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=80.0
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc----C-CccEEEeccCcCC--CCCCc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR----G-VVPLYISISQRLP--FFDNT 298 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r----g-~i~~~~~d~~~Lp--f~d~s 298 (392)
+....+++++ ||+|||+|.++..+++. +..++| +|++..+.+.+.++ + .+.++++|...+| +++++
T Consensus 413 i~d~~~g~rV---LDIGCGTG~ls~~LA~~~P~~kVtG--IDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 413 ILDYIKGDTI---VDVGAGGGVMLDMIEEETEDKRIYG--IDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred HhhhcCCCEE---EEeCCCCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCC
Confidence 4445555555 99999999999888874 567777 55544444433332 2 2466788888887 78899
Q ss_pred ccEEEEcccccccC----------CchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 299 LDIVHSMHVLSNWI----------PTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 299 FDlV~s~~~l~~~~----------~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
||+|+++.++|++. +...+..++++++|+|||||.+++.+.
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999999998753 235667899999999999999999874
No 69
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.18 E-value=4.2e-10 Score=104.88 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=85.4
Q ss_pred EEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC--------CCCCcccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--------FFDNTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--------f~d~sFDlV~s~~~l 308 (392)
|||+|||+|.++..++++. ..|+++|++. +. ...+ +.++++|+.+.+ +.+++||+|++..+.
T Consensus 55 VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~---~~---~~~~-v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 55 VVDLGAAPGGWSQYAVTQIGDKGRVIACDILP---MD---PIVG-VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred EEEEcccCCHHHHHHHHHcCCCceEEEEeccc---cc---CCCC-cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 4999999999999998853 4677855432 11 1123 688899988753 667899999998766
Q ss_pred cccCCch--------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCccccee
Q 047630 309 SNWIPTT--------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMY 380 (392)
Q Consensus 309 ~~~~~~~--------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~y 380 (392)
+....+. ..+.+|+++.++|||||.|++..+.. ++..+ +...+++ .|..+++..-.. .+ .+..|.|
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~-~l~~l~~-~f~~v~~~Kp~s-sr-~~s~e~~ 201 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDE-YLREIRS-LFTKVKVRKPDS-SR-ARSREVY 201 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHH-HHHHHHh-CceEEEEECCcc-cc-ccCceeE
Confidence 5432211 12568999999999999999987654 22222 2233332 588887752221 11 2556787
Q ss_pred eEE
Q 047630 381 LSA 383 (392)
Q Consensus 381 lsa 383 (392)
+.+
T Consensus 202 ~~~ 204 (209)
T PRK11188 202 IVA 204 (209)
T ss_pred EEe
Confidence 743
No 70
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.17 E-value=3.1e-10 Score=101.98 Aligned_cols=173 Identities=17% Similarity=0.185 Sum_probs=112.1
Q ss_pred cccccceeccCCCCcHHHHHHHHHhhCC----CCcccEEEEEcCCcchHHHHHHHcCCE--EEEEecCCCchhH---HHH
Q 047630 206 GVEKIRWTQKKGNGGLDFSIDEVLATKK----PGTIRIGLDIGGGVATFAVRMMERNIT--IVTTSMNLNGPFN---NFI 276 (392)
Q Consensus 206 ~~e~~~w~~~~~~~~~~~lI~~ll~l~~----~~~ir~VLDIGCGtG~~a~~La~~g~~--vvg~~iD~~a~~~---~~a 276 (392)
+.+++-|+.... .+..++.+..... +....+|||+|||.|.+...|++.+.+ .+| +|.+.... +.+
T Consensus 36 gd~GEvWFg~~a---e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~G--vDYs~~AV~LA~ni 110 (227)
T KOG1271|consen 36 GDEGEVWFGEDA---EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTG--VDYSEKAVELAQNI 110 (227)
T ss_pred CCccceecCCcH---HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccc--cccCHHHHHHHHHH
Confidence 567788876443 3444444443222 222235599999999999999997765 455 55532222 244
Q ss_pred HhcC----CccEEEeccCcCCCCCCcccEEEEcccccc-----cCCchhHHHHHHHHHHcccCCcEEEEEeecccccchH
Q 047630 277 ASRG----VVPLYISISQRLPFFDNTLDIVHSMHVLSN-----WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLE 347 (392)
Q Consensus 277 a~rg----~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~-----~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~ 347 (392)
+++. .|+|.+.|+..-.+..+.||+|+--..+.. -.....+...+..+.+.|+|||+|+|.....+.
T Consensus 111 Ae~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~---- 186 (227)
T KOG1271|consen 111 AERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK---- 186 (227)
T ss_pred HHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH----
Confidence 4443 278899998876778889999986554432 122233345788899999999999999765543
Q ss_pred HHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEc
Q 047630 348 DVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEK 387 (392)
Q Consensus 348 ~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~K 387 (392)
+++.+.++..||+.++-........+...+...-++.|++
T Consensus 187 dELv~~f~~~~f~~~~tvp~ptF~FgG~~G~tvt~vaF~~ 226 (227)
T KOG1271|consen 187 DELVEEFENFNFEYLSTVPTPTFMFGGSVGSTVTSVAFLR 226 (227)
T ss_pred HHHHHHHhcCCeEEEEeeccceEEeccccccEEEEEEEec
Confidence 4466788888888887776665554444444444555543
No 71
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.17 E-value=3.6e-10 Score=110.43 Aligned_cols=128 Identities=21% Similarity=0.273 Sum_probs=85.7
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH--HHHhcCC-ccEEEeccCcCCCCCCcccEEEEcccccccCCc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN--FIASRGV-VPLYISISQRLPFFDNTLDIVHSMHVLSNWIPT 314 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~--~aa~rg~-i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~ 314 (392)
+|||+|||+|.++...++.|+ .|+++|+|..+.... ++..++. ..+.+.... ......||+|+++-...
T Consensus 164 ~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~--~~~~~~~dlvvANI~~~----- 236 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE--DLVEGKFDLVVANILAD----- 236 (295)
T ss_dssp EEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS--CTCCS-EEEEEEES-HH-----
T ss_pred EEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec--ccccccCCEEEECCCHH-----
Confidence 449999999999999999887 689988776332222 4445553 223232222 23358999999986543
Q ss_pred hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCcccceeeEEEEEcC
Q 047630 315 TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMYLSALLEKP 388 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~ylsai~~Kp 388 (392)
-+..++..+.++|+|||+|+++.+..... +.+.+.+++ ||+.++.. ..++|. ..+++|.
T Consensus 237 -vL~~l~~~~~~~l~~~G~lIlSGIl~~~~---~~v~~a~~~-g~~~~~~~---------~~~~W~-~l~~~Kk 295 (295)
T PF06325_consen 237 -VLLELAPDIASLLKPGGYLILSGILEEQE---DEVIEAYKQ-GFELVEER---------EEGEWV-ALVFKKK 295 (295)
T ss_dssp -HHHHHHHHCHHHEEEEEEEEEEEEEGGGH---HHHHHHHHT-TEEEEEEE---------EETTEE-EEEEEE-
T ss_pred -HHHHHHHHHHHhhCCCCEEEEccccHHHH---HHHHHHHHC-CCEEEEEE---------EECCEE-EEEEEeC
Confidence 34568899999999999999998876443 336667777 99988766 245655 4677763
No 72
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.16 E-value=2.9e-10 Score=103.63 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=76.1
Q ss_pred EEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 240 GLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
|||+|||+|.++..++..+ .+|+++| .+..+.+ .+.+.+ .+.++.++++.++ .+++||+|++.. +++
T Consensus 46 vLDiGcGtG~~s~~la~~~~~~~V~~iD--~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 46 VIDIGSGAGFPGIPLAIARPELKLTLLE--SNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS- 120 (181)
T ss_pred EEEecCCCCccHHHHHHHCCCCeEEEEe--CcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hhC-
Confidence 4999999999999888744 5677744 5333332 223333 2678889988875 367999999865 332
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
++.+++.+.++|||||.+++.+......++.. ..+.+...||+.++-.
T Consensus 121 -----~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~-~~e~~~~~~~~~~~~~ 168 (181)
T TIGR00138 121 -----LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEE-AKRKCQVLGVEPLEVP 168 (181)
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHH-HHHhhhhcCceEeecc
Confidence 34588999999999999998753222222222 2233344788877654
No 73
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.16 E-value=2.7e-10 Score=103.84 Aligned_cols=125 Identities=17% Similarity=0.169 Sum_probs=92.5
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCc-C-CCCCCcccEEEEcccc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQR-L-PFFDNTLDIVHSMHVL 308 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~-L-pf~d~sFDlV~s~~~l 308 (392)
.++.+| ||+|||.|.+..+|.+ +++.++| ++++.+....+.++| +.++++|++. + .|++++||.|+.+.++
T Consensus 12 ~pgsrV---LDLGCGdG~LL~~L~~~k~v~g~G--vEid~~~v~~cv~rG-v~Viq~Dld~gL~~f~d~sFD~VIlsqtL 85 (193)
T PF07021_consen 12 EPGSRV---LDLGCGDGELLAYLKDEKQVDGYG--VEIDPDNVAACVARG-VSVIQGDLDEGLADFPDQSFDYVILSQTL 85 (193)
T ss_pred CCCCEE---EecCCCchHHHHHHHHhcCCeEEE--EecCHHHHHHHHHcC-CCEEECCHHHhHhhCCCCCccEEehHhHH
Confidence 456666 9999999999999998 7788887 555456677888888 5899998654 4 4889999999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEe--ec--------------cccc----------ch----HHHHHHHHHHcC
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDH--FF--------------CVGA----------QL----EDVYVPLIESVG 358 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~--~~--------------~~~~----------~l----~~~l~~ll~~aG 358 (392)
.+. ...+.+|+|+.|+-| ..+++- |. ...+ ++ -+.++++.++.|
T Consensus 86 Q~~---~~P~~vL~EmlRVgr---~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 86 QAV---RRPDEVLEEMLRVGR---RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred HhH---hHHHHHHHHHHHhcC---eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC
Confidence 997 344468999987744 444332 20 0000 00 556899999999
Q ss_pred CeEEEEEEee
Q 047630 359 FNKLKWVVGR 368 (392)
Q Consensus 359 f~~i~w~~~~ 368 (392)
+++++.....
T Consensus 160 i~I~~~~~~~ 169 (193)
T PF07021_consen 160 IRIEERVFLD 169 (193)
T ss_pred CEEEEEEEEc
Confidence 9999887664
No 74
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.14 E-value=1.7e-10 Score=102.99 Aligned_cols=98 Identities=21% Similarity=0.200 Sum_probs=76.2
Q ss_pred ecCCCchhHHHHHhc----C-----CccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEE
Q 047630 265 SMNLNGPFNNFIASR----G-----VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 265 ~iD~~a~~~~~aa~r----g-----~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~li 335 (392)
++|++..+.+.+.++ + .++++++|++++|+++++||+|++.++++++ .+...+++|++|+|||||.|+
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEEE
Confidence 367756666544322 1 2689999999999999999999999999987 345579999999999999998
Q ss_pred EEeeccccc--------------------------c------------hHHHHHHHHHHcCCeEEEEE
Q 047630 336 LDHFFCVGA--------------------------Q------------LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 336 i~~~~~~~~--------------------------~------------l~~~l~~ll~~aGf~~i~w~ 365 (392)
+.++..... . ..+++.++++++||+.+++.
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 887643211 0 06678889999999998776
No 75
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.14 E-value=1.1e-09 Score=102.11 Aligned_cols=122 Identities=14% Similarity=0.163 Sum_probs=88.1
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cCC--ccEEEeccCcCCCC-CCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RGV--VPLYISISQRLPFF-DNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg~--i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~ 311 (392)
.|||+|||+|.++..+++.+..++++| ++......+.+ .+. +.+..++...++.. .++||+|++..++++.
T Consensus 48 ~vLdlG~G~G~~~~~l~~~~~~v~~iD--~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~ 125 (224)
T TIGR01983 48 RVLDVGCGGGLLSEPLARLGANVTGID--ASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV 125 (224)
T ss_pred eEEEECCCCCHHHHHHHhcCCeEEEEe--CCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence 349999999999999998888888855 43333332222 232 56777777776654 3789999999999887
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccc--------------------c-c-----hHHHHHHHHHHcCCeEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG--------------------A-Q-----LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~--------------------~-~-----l~~~l~~ll~~aGf~~i~w~ 365 (392)
. +...++.++.++|+|||.+++....... . . ...++.++++++||+.+...
T Consensus 126 ~---~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 126 P---DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred C---CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 3 4456999999999999999887532110 0 0 13568889999999997654
No 76
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.13 E-value=7.1e-10 Score=104.22 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=86.9
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC-CccEEEeccCcCC-CCCCcccEEEEcccccccCC
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG-VVPLYISISQRLP-FFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg-~i~~~~~d~~~Lp-f~d~sFDlV~s~~~l~~~~~ 313 (392)
|||||||+|.++..+++.+..++++| ++......+.+ .+ .+.+...+...++ ..+++||+|++..++++..
T Consensus 52 vLdiG~G~G~~~~~l~~~~~~v~~iD--~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~- 128 (233)
T PRK05134 52 VLDVGCGGGILSESMARLGADVTGID--ASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP- 128 (233)
T ss_pred EEEeCCCCCHHHHHHHHcCCeEEEEc--CCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccC-
Confidence 49999999999999999888888854 43344333322 12 2456666666554 3457899999999998873
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeecccc---------------------cc-----hHHHHHHHHHHcCCeEEEEE
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVG---------------------AQ-----LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~~~---------------------~~-----l~~~l~~ll~~aGf~~i~w~ 365 (392)
+...+++++.++|+|||.+++....... .. ..+++.++++++||+.+...
T Consensus 129 --~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 129 --DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 3446899999999999999887532100 00 14568999999999988654
No 77
>PRK14968 putative methyltransferase; Provisional
Probab=99.12 E-value=3e-09 Score=95.91 Aligned_cols=125 Identities=19% Similarity=0.217 Sum_probs=83.9
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcCC----ccEEEeccCcCCCCCCcccEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRGV----VPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg~----i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
.++.++ ||+|||+|.++..+++.+.+++++|++ ......+. ..+. +.+..+|... ++.+++||+|+
T Consensus 22 ~~~~~v---Ld~G~G~G~~~~~l~~~~~~v~~~D~s--~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi 95 (188)
T PRK14968 22 KKGDRV---LEVGTGSGIVAIVAAKNGKKVVGVDIN--PYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVIL 95 (188)
T ss_pred cCCCEE---EEEccccCHHHHHHHhhcceEEEEECC--HHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEE
Confidence 444445 999999999999999998889885544 33433222 2221 5667776554 34556899999
Q ss_pred EcccccccC------------------CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 304 SMHVLSNWI------------------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 304 s~~~l~~~~------------------~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
++..+.... ....+..+++++.++|||||.+++...... ..+.+.++++++||+.....
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~---~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT---GEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC---CHHHHHHHHHHCCCeeeeee
Confidence 876543311 022356789999999999999877643221 12447889999999876443
No 78
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.12 E-value=1.1e-09 Score=102.32 Aligned_cols=123 Identities=17% Similarity=0.231 Sum_probs=84.5
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
.|||||||+|.++..+++.+..++++| ++..+.+.+.++ + .+.+..+| ++..+++||+|++..+++|+
T Consensus 66 ~vLDvGcG~G~~~~~l~~~~~~v~~~D--~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 66 RILDAGCGVGSLSIPLARRGAKVVASD--ISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred EEEEEeCCCCHHHHHHHHcCCEEEEEE--CCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcC
Confidence 449999999999999999988888855 433444333221 2 35677776 44456889999999999885
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEee-------------cccc-c------chHHHHHHHHHHcCCeEEEEEEe
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHF-------------FCVG-A------QLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~-------------~~~~-~------~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+...+..+++++.+.+++++++.+... +... . -...++.++++++||+.+.....
T Consensus 141 -~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 141 -PQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred -CHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeec
Confidence 445667899999998766555543221 0000 0 01456888999999998877643
No 79
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.10 E-value=3.1e-10 Score=104.37 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=78.3
Q ss_pred EEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHH----hcC--CccEEEeccCcCC---CCCCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQRLP---FFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~Lp---f~d~sFDlV~s~~~ 307 (392)
++||||||+|.++..+++.. ..++| +|++..+.+.+. +.+ .+.++.+|+..++ ++++++|.|++.+.
T Consensus 19 ~ilDiGcG~G~~~~~la~~~p~~~v~g--vD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQNPDKNFLG--IEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred eEEEeCCCccHHHHHHHHhCCCCCEEE--EEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 45999999999999999864 46677 555344443322 222 3678888887653 45679999998875
Q ss_pred ccccCCch------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC-CeEE
Q 047630 308 LSNWIPTT------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG-FNKL 362 (392)
Q Consensus 308 l~~~~~~~------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG-f~~i 362 (392)
. +|.... ..+.+++++.|+|||||.|++... .......+.+.+.+.+ |+.+
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td---~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD---NEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC---CHHHHHHHHHHHHhCCCeEec
Confidence 4 222211 114689999999999999987652 2233344556666655 6654
No 80
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.07 E-value=2.5e-09 Score=105.57 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=79.7
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-----------CccEEEeccCcCCCCCCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-----------VVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-----------~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
.|||+|||+|.++..+++.+..|+++ |++..+.+.+.++. .+.+...|.+.+ +++||+|+|..+
T Consensus 147 ~VLDlGcGtG~~a~~la~~g~~V~gv--D~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~v 221 (315)
T PLN02585 147 TVCDAGCGTGSLAIPLALEGAIVSAS--DISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDV 221 (315)
T ss_pred EEEEecCCCCHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCE
Confidence 34999999999999999999999984 55444444333221 135666665543 578999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEeec--------------cc-c----cc--hHHHHHHHHHHcCCeEEEEE
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF--------------CV-G----AQ--LEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~--------------~~-~----~~--l~~~l~~ll~~aGf~~i~w~ 365 (392)
++|+ +++....+++.+.+ +.+||.++..... .. . .. -.++++++++++||+++.-.
T Consensus 222 L~H~-p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 222 LIHY-PQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred EEec-CHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 9885 44444567777775 4566665432110 00 0 00 15779999999999987544
No 81
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.05 E-value=2.1e-09 Score=98.17 Aligned_cols=139 Identities=18% Similarity=0.242 Sum_probs=82.6
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC--------CCC
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--------FFD 296 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--------f~d 296 (392)
...+.+++++ ||+|||+|.++..++++. ..++++|++. .. ...+ +.++.+|..+.+ +++
T Consensus 27 ~~~i~~g~~V---LDiG~GtG~~~~~l~~~~~~~~~v~~vDis~--~~----~~~~-i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 27 FKLIKPGDTV---LDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP--MK----PIEN-VDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred hcccCCCCEE---EEecCCCCHHHHHHHHHhCCCceEEEEeccc--cc----cCCC-ceEEEeeCCChhHHHHHHHHhCC
Confidence 3334555555 999999999998888743 3588855543 22 1123 577777776542 456
Q ss_pred CcccEEEEccccc--------ccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 297 NTLDIVHSMHVLS--------NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 297 ~sFDlV~s~~~l~--------~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
++||+|++..+.+ +....+..+.++.++.++|+|||++++..+. .++..+ +...+++. |..+......
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~--~~~~~~-~l~~l~~~-~~~~~~~~~~ 172 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ--GEEIDE-YLNELRKL-FEKVKVTKPQ 172 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc--CccHHH-HHHHHHhh-hceEEEeCCC
Confidence 7899999865421 1111123467999999999999999987532 233333 33444442 5444333211
Q ss_pred ccCCCCcccceeeE
Q 047630 369 KLDRGPELREMYLS 382 (392)
Q Consensus 369 k~d~~~~~~e~yls 382 (392)
-.-....|.|+.
T Consensus 173 --~~~~~~~~~~~~ 184 (188)
T TIGR00438 173 --ASRKRSAEVYIV 184 (188)
T ss_pred --CCCcccceEEEE
Confidence 111245577763
No 82
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.04 E-value=2.7e-09 Score=96.06 Aligned_cols=111 Identities=21% Similarity=0.290 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCE--EEEEecCCCchhHHH----HHhcCC--ccEEEeccCcC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNIT--IVTTSMNLNGPFNNF----IASRGV--VPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~--vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~L 292 (392)
...+++.+... +.+++ ||+|||+|.++..+++.+.. ++++|++ ....+. +...+. +.++.+|...
T Consensus 20 t~lL~~~l~~~-~~~~v---LDlG~G~G~i~~~la~~~~~~~v~~vDi~--~~a~~~a~~n~~~n~~~~v~~~~~d~~~- 92 (170)
T PF05175_consen 20 TRLLLDNLPKH-KGGRV---LDLGCGSGVISLALAKRGPDAKVTAVDIN--PDALELAKRNAERNGLENVEVVQSDLFE- 92 (170)
T ss_dssp HHHHHHHHHHH-TTCEE---EEETSTTSHHHHHHHHTSTCEEEEEEESB--HHHHHHHHHHHHHTTCTTEEEEESSTTT-
T ss_pred HHHHHHHHhhc-cCCeE---EEecCChHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHHHhcCccccccccccccc-
Confidence 44555555533 44566 99999999999999997766 7775544 333332 222332 4566777544
Q ss_pred CCCCCcccEEEEcccccccCC--chhHHHHHHHHHHcccCCcEEEEEe
Q 047630 293 PFFDNTLDIVHSMHVLSNWIP--TTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~~--~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+.++++||+|+++..++.-.+ ...++.++++..+.|||||.|++..
T Consensus 93 ~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 93 ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 234789999999987654221 1246789999999999999997754
No 83
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.04 E-value=2.1e-09 Score=106.74 Aligned_cols=126 Identities=12% Similarity=0.079 Sum_probs=87.3
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCcCCCCCCcccE
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~Lpf~d~sFDl 301 (392)
+..+.++..+ ||+|||+|.++..++..+..++|+|+|. .+.. .+...+. +.+..+|+.++|+.+++||+
T Consensus 177 l~~~~~g~~v---LDp~cGtG~~lieaa~~~~~v~g~Di~~--~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~ 251 (329)
T TIGR01177 177 LARVTEGDRV---LDPFCGTGGFLIEAGLMGAKVIGCDIDW--KMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDA 251 (329)
T ss_pred HhCCCCcCEE---EECCCCCCHHHHHHHHhCCeEEEEcCCH--HHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCE
Confidence 3344454445 9999999999998888899999955543 3333 2222232 56788999999988899999
Q ss_pred EEEccccccc--C----CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 302 VHSMHVLSNW--I----PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 302 V~s~~~l~~~--~----~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
|++...+... . .......++.++.|+|||||++++..... . .+.+.++++|| ++.-.
T Consensus 252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~----~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--I----DLESLAEDAFR-VVKRF 314 (329)
T ss_pred EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--C----CHHHHHhhcCc-chhee
Confidence 9997443211 0 11224689999999999999997764322 1 25568899999 65443
No 84
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.03 E-value=2.3e-09 Score=89.79 Aligned_cols=92 Identities=21% Similarity=0.168 Sum_probs=64.6
Q ss_pred EEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHH----HhcC--CccEEEeccCc-CCCCCCcccEEEEccccc
Q 047630 239 IGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFI----ASRG--VVPLYISISQR-LPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~a----a~rg--~i~~~~~d~~~-Lpf~d~sFDlV~s~~~l~ 309 (392)
.|||+|||+|.++..+++.. ..+++ +|++....+.+ ...+ .+.++.++... ++...++||.|++.....
T Consensus 22 ~vldlG~G~G~~~~~l~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 22 VLWDIGAGSGSITIEAARLVPNGRVYA--IERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred EEEEeCCCCCHHHHHHHHHCCCceEEE--EcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 44999999999999999853 46777 55544444322 2222 25666676554 333446899999976543
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
. ...+++++++.|||||.|++..
T Consensus 100 ~------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 L------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred h------HHHHHHHHHHHcCCCCEEEEEe
Confidence 3 3579999999999999998864
No 85
>PTZ00146 fibrillarin; Provisional
Probab=99.03 E-value=4.8e-09 Score=102.00 Aligned_cols=143 Identities=11% Similarity=0.154 Sum_probs=88.6
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCch----hHHHHHhcCCccEEEeccCc---CCCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGP----FNNFIASRGVVPLYISISQR---LPFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~----~~~~aa~rg~i~~~~~d~~~---Lpf~d~sFD 300 (392)
+.++.+| ||+|||+|.++..+++. + -.|+++| ++.. ....+.++..+.++++|+.. +....++||
T Consensus 130 IkpG~~V---LDLGaG~G~~t~~lAdiVG~~G~VyAVD--~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 130 IKPGSKV---LYLGAASGTTVSHVSDLVGPEGVVYAVE--FSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred cCCCCEE---EEeCCcCCHHHHHHHHHhCCCCEEEEEE--CcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCC
Confidence 4455555 99999999999999984 2 3688854 5322 22233334446777888643 222346899
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec-cc-----ccc-hHHHHHHHHHHcCCeEEEEEEeeccCCC
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF-CV-----GAQ-LEDVYVPLIESVGFNKLKWVVGRKLDRG 373 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~-~~-----~~~-l~~~l~~ll~~aGf~~i~w~~~~k~d~~ 373 (392)
+|++.... ++....++.++.++|||||.|+|..-. +. .++ +.++ .++++++||+.++.......
T Consensus 205 vV~~Dva~-----pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~e-v~~L~~~GF~~~e~v~L~Py--- 275 (293)
T PTZ00146 205 VIFADVAQ-----PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASE-VQKLKKEGLKPKEQLTLEPF--- 275 (293)
T ss_pred EEEEeCCC-----cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHH-HHHHHHcCCceEEEEecCCc---
Confidence 99987641 234446778999999999999984211 11 111 2222 37789999998877654333
Q ss_pred CcccceeeEEEEEcC
Q 047630 374 PELREMYLSALLEKP 388 (392)
Q Consensus 374 ~~~~e~ylsai~~Kp 388 (392)
..+...+.++++.+
T Consensus 276 -~~~h~~v~~~~~~~ 289 (293)
T PTZ00146 276 -ERDHAVVIGVYRPV 289 (293)
T ss_pred -cCCcEEEEEEEcCC
Confidence 23343344455443
No 86
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.03 E-value=2.9e-09 Score=100.63 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHH----HhcC--CccEEEeccCcC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFI----ASRG--VVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~a----a~rg--~i~~~~~d~~~L 292 (392)
.+.+++.++...+.. -..|||+|||+|.++..+++. +..++++| ++....+.+ ...+ .+.++.+|...
T Consensus 73 ~~~l~~~~l~~~~~~-~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD--~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~- 148 (251)
T TIGR03534 73 TEELVEAALERLKKG-PLRVLDLGTGSGAIALALAKERPDARVTAVD--ISPEALAVARKNAARLGLDNVTFLQSDWFE- 148 (251)
T ss_pred hHHHHHHHHHhcccC-CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCeEEEEECchhc-
Confidence 455666665543322 124599999999999999985 45777755 433444322 2223 25777888765
Q ss_pred CCCCCcccEEEEcccccccC-----Cc------------------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHH
Q 047630 293 PFFDNTLDIVHSMHVLSNWI-----PT------------------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~-----~~------------------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~ 349 (392)
++++++||+|+++..+.... .. .....++.++.++|+|||.+++..-.. ..+.
T Consensus 149 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~----~~~~ 224 (251)
T TIGR03534 149 PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD----QGEA 224 (251)
T ss_pred cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc----HHHH
Confidence 45678999999975443210 00 112468899999999999999875332 2345
Q ss_pred HHHHHHHcCCeEEEEE
Q 047630 350 YVPLIESVGFNKLKWV 365 (392)
Q Consensus 350 l~~ll~~aGf~~i~w~ 365 (392)
+.++++++||+.+...
T Consensus 225 ~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 225 VRALFEAAGFADVETR 240 (251)
T ss_pred HHHHHHhCCCCceEEE
Confidence 7888999999877643
No 87
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.02 E-value=2.9e-09 Score=103.94 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=74.6
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHH----hcCC---ccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIA----SRGV---VPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa----~rg~---i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
+|||+|||+|.++..+++.+. .++++|+|. ...+.+. .++. +.+..++ ..+..+++||+|+++....
T Consensus 162 ~VLDvGcGsG~lai~aa~~g~~~V~avDid~--~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 162 NVIDVGCGSGILSIAALKLGAAKVVGIDIDP--LAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILAE- 236 (288)
T ss_pred EEEEeCCChhHHHHHHHHcCCCeEEEEECCH--HHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCHH-
Confidence 349999999999999988765 688855543 3333222 2232 2233333 2234467899999976542
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
.+..++.++.++|||||+|+++.+... ..+.+.+.+++. |+.+..
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~---~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILET---QAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcHh---HHHHHHHHHHcc-CceeeE
Confidence 345789999999999999999876532 233466667665 776654
No 88
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.99 E-value=1.8e-08 Score=92.88 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=79.2
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcC-CCCCCcc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRL-PFFDNTL 299 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~L-pf~d~sF 299 (392)
+.++..+ ||+|||+|.++..++.. +.+++++| ++..+.+. +.+.+ .+.++.+|.... +..++.|
T Consensus 38 ~~~~~~v---lDlG~GtG~~s~~~a~~~~~~~~v~avD--~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMI---LDIGCGTGSVTVEASLLVGETGKVYAVD--KDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEE---EEeCCcCCHHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 4455555 99999999999988763 35788855 43344442 22233 256777776553 3334689
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCe--EEEEE
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFN--KLKWV 365 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~--~i~w~ 365 (392)
|+|++.... ..+..+++++.++|||||++++... ..+.. ....+.+++.||. .++|.
T Consensus 113 D~V~~~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~-~~~~~~l~~~g~~~~~~~~~ 171 (198)
T PRK00377 113 DRIFIGGGS------EKLKEIISASWEIIKKGGRIVIDAI--LLETV-NNALSALENIGFNLEITEVI 171 (198)
T ss_pred CEEEECCCc------ccHHHHHHHHHHHcCCCcEEEEEee--cHHHH-HHHHHHHHHcCCCeEEEEEe
Confidence 999985422 3345789999999999999987543 22223 4477788889973 34444
No 89
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.99 E-value=2e-09 Score=99.23 Aligned_cols=106 Identities=18% Similarity=0.108 Sum_probs=81.3
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-CccEEEeccCcCCCCCCcccEEEEccc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
+...+....+.|.|+|||+|..+..|+++-+..+.+++|-+.++.+.++.+. .+.|..+|+..+. ++..+|+++++.+
T Consensus 23 la~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAv 101 (257)
T COG4106 23 LARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAV 101 (257)
T ss_pred HhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhh
Confidence 3333445566679999999999999999755444444887677777777775 3788999988875 5678999999999
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|+...+. ..+|..+...|.|||.|.+.-
T Consensus 102 lqWlpdH---~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 102 LQWLPDH---PELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhhcccc---HHHHHHHHHhhCCCceEEEEC
Confidence 9665333 368999999999999997663
No 90
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=3.7e-09 Score=98.07 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=67.1
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCCCCCCc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lpf~d~s 298 (392)
+.+.++.++ ||+|||+|..+..+++. +..++++| ++....+.+. +.+ .+.++.+|........++
T Consensus 68 l~~~~~~~V---LDiG~GsG~~~~~la~~~~~~g~V~~iD--~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (205)
T PRK13944 68 IEPRPGMKI---LEVGTGSGYQAAVCAEAIERRGKVYTVE--IVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP 142 (205)
T ss_pred cCCCCCCEE---EEECcCccHHHHHHHHhcCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence 334454555 99999999999988873 35788855 4334433222 223 257788887765445678
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
||+|++..++.++ ..++.++|||||+|++..
T Consensus 143 fD~Ii~~~~~~~~---------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 143 FDAIIVTAAASTI---------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccEEEEccCcchh---------hHHHHHhcCcCcEEEEEE
Confidence 9999999887553 357889999999998763
No 91
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.96 E-value=1.3e-08 Score=101.83 Aligned_cols=111 Identities=16% Similarity=0.262 Sum_probs=73.9
Q ss_pred cHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHH----HHhcCC-ccEEEeccCcC
Q 047630 220 GLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNF----IASRGV-VPLYISISQRL 292 (392)
Q Consensus 220 ~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~----aa~rg~-i~~~~~d~~~L 292 (392)
+.+.+++.+.. ...+++ ||+|||+|.++..+++++ ..++++|++ ....+. +.+.+. ..++.+|...
T Consensus 184 gt~lLl~~l~~-~~~g~V---LDlGCG~G~ls~~la~~~p~~~v~~vDis--~~Al~~A~~nl~~n~l~~~~~~~D~~~- 256 (342)
T PRK09489 184 GSQLLLSTLTP-HTKGKV---LDVGCGAGVLSAVLARHSPKIRLTLSDVS--AAALESSRATLAANGLEGEVFASNVFS- 256 (342)
T ss_pred HHHHHHHhccc-cCCCeE---EEeccCcCHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCEEEEccccc-
Confidence 34555554432 222444 999999999999999865 477775544 333332 223332 3455555443
Q ss_pred CCCCCcccEEEEcccccccCC--chhHHHHHHHHHHcccCCcEEEEEe
Q 047630 293 PFFDNTLDIVHSMHVLSNWIP--TTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~~--~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..++.||+|+++..+|.... ....+.+++++.+.|||||.|++..
T Consensus 257 -~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 257 -DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred -ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 23678999999998875322 3456789999999999999998875
No 92
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.96 E-value=2.6e-09 Score=107.84 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=74.6
Q ss_pred CcHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh----cC-----CccEEEe
Q 047630 219 GGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS----RG-----VVPLYIS 287 (392)
Q Consensus 219 ~~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~----rg-----~i~~~~~ 287 (392)
.|.+.+++.+-. ..+++ |||+|||+|.++..+++++ .+++++| ++....+.+.+ .+ .+.++.+
T Consensus 215 ~GtrllL~~lp~-~~~~~---VLDLGCGtGvi~i~la~~~P~~~V~~vD--~S~~Av~~A~~N~~~n~~~~~~~v~~~~~ 288 (378)
T PRK15001 215 IGARFFMQHLPE-NLEGE---IVDLGCGNGVIGLTLLDKNPQAKVVFVD--ESPMAVASSRLNVETNMPEALDRCEFMIN 288 (378)
T ss_pred hHHHHHHHhCCc-ccCCe---EEEEeccccHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHcCcccCceEEEEEc
Confidence 456666655431 12234 4999999999999999864 5677755 53333332221 22 2456666
Q ss_pred ccCcCCCCCCcccEEEEccccccc--CCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 288 ISQRLPFFDNTLDIVHSMHVLSNW--IPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 288 d~~~Lpf~d~sFDlV~s~~~l~~~--~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|.... +.+.+||+|+|+..+|.. .......++++++.++|||||.|++..
T Consensus 289 D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 289 NALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 65331 245689999999777643 233445689999999999999999884
No 93
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.95 E-value=3.8e-09 Score=100.03 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=78.7
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
.....-...+.|||||+|.|.++..+++..+.+.++-+|+ +...+.+.+...+.++.+|.. -+++. +|+++..+++
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVL 168 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSG
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhh
Confidence 3333334556779999999999999999655444444666 444444444556899999987 56655 9999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCC--cEEEEEeeccc
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPG--GLFWLDHFFCV 342 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPG--G~lii~~~~~~ 342 (392)
|+|.+ +....+|+++++.|+|| |+|+|.+..-+
T Consensus 169 h~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 169 HDWSD-EDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp GGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred hhcch-HHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 99855 55579999999999999 99998887643
No 94
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.94 E-value=2.3e-08 Score=95.02 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=90.0
Q ss_pred cccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCch
Q 047630 236 TIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
+...+||||+|.|..+..|+..-.+|++++++ ..+.....++|. .++-. .++.-.+..||+|.|.+++.....+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S--~~Mr~rL~~kg~-~vl~~--~~w~~~~~~fDvIscLNvLDRc~~P- 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS--PPMRWRLSKKGF-TVLDI--DDWQQTDFKFDVISCLNVLDRCDRP- 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC--HHHHHHHHhCCC-eEEeh--hhhhccCCceEEEeehhhhhccCCH-
Confidence 44456999999999999999987888886643 466667777873 43322 2233335689999999999876333
Q ss_pred hHHHHHHHHHHcccCCcEEEEEeec---------c-----ccc----------chHHHHHHHHHHcCCeEEEEEEeec
Q 047630 316 LLHFLMFDIYRVLRPGGLFWLDHFF---------C-----VGA----------QLEDVYVPLIESVGFNKLKWVVGRK 369 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~lii~~~~---------~-----~~~----------~l~~~l~~ll~~aGf~~i~w~~~~k 369 (392)
..+|+++++.|+|+|++++.-.. . +.+ +-...+.+.++.+||+++.|....=
T Consensus 168 --~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PY 243 (265)
T PF05219_consen 168 --LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPY 243 (265)
T ss_pred --HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCc
Confidence 35999999999999999777531 1 010 0122344889999999999997763
No 95
>PRK14967 putative methyltransferase; Provisional
Probab=98.92 E-value=2.2e-08 Score=93.89 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=79.1
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHH----HHhcCC-ccEEEeccCcCCCCCCcccEEEEc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNF----IASRGV-VPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~----aa~rg~-i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
.++.++ ||+|||+|.++..+++.+. .++++|+|. ..... +...+. +.++.+|... .+.+++||+|+++
T Consensus 35 ~~~~~v---LDlGcG~G~~~~~la~~~~~~v~~vD~s~--~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~n 108 (223)
T PRK14967 35 GPGRRV---LDLCTGSGALAVAAAAAGAGSVTAVDISR--RAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSN 108 (223)
T ss_pred CCCCeE---EEecCCHHHHHHHHHHcCCCeEEEEECCH--HHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEEC
Confidence 344445 9999999999999998765 788855443 33332 222232 4566777655 3456799999998
Q ss_pred ccccccCC------------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 306 HVLSNWIP------------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 306 ~~l~~~~~------------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
..+..-.. ...++.++.++.++|||||++++..-... .. ..+.+.+++.||.....
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~-~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GV-ERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CH-HHHHHHHHHCCCCeEEE
Confidence 54332111 01246688999999999999987542221 22 23666777888765443
No 96
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.92 E-value=7.7e-09 Score=97.09 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=88.4
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHH-HhcC-----------------CccEEEeccCcCCCCC-Cccc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFI-ASRG-----------------VVPLYISISQRLPFFD-NTLD 300 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~a-a~rg-----------------~i~~~~~d~~~Lpf~d-~sFD 300 (392)
||+.|||.|.-+..|+++|.+|+|+| ++....+.+ .+++ .+.++++|...++-.. ++||
T Consensus 41 vLvPgCG~g~D~~~La~~G~~VvGvD--ls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD 118 (218)
T PF05724_consen 41 VLVPGCGKGYDMLWLAEQGHDVVGVD--LSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFD 118 (218)
T ss_dssp EEETTTTTSCHHHHHHHTTEEEEEEE--S-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEE
T ss_pred EEEeCCCChHHHHHHHHCCCeEEEEe--cCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCce
Confidence 49999999999999999999999955 533333333 2322 1467788888876543 4799
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee-ccccc-------chHHHHHHHHHHcCCeEEEEEEeecc
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF-FCVGA-------QLEDVYVPLIESVGFNKLKWVVGRKL 370 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~-~~~~~-------~l~~~l~~ll~~aGf~~i~w~~~~k~ 370 (392)
+|+=..+++- .+++..++..+.+.++|||||.+++..+ +.... -..+++.+++. .+|++.........
T Consensus 119 ~iyDr~~l~A-lpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~~~~ 194 (218)
T PF05724_consen 119 LIYDRTFLCA-LPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEEEDSI 194 (218)
T ss_dssp EEEECSSTTT-S-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEEEE-T
T ss_pred EEEEeccccc-CCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEeccccc
Confidence 9999988866 5778889999999999999999433332 22111 11667888887 67888777764433
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.92 E-value=2.4e-08 Score=95.98 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc------CCccEEEeccCcC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR------GVVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r------g~i~~~~~d~~~L 292 (392)
.+.+++.++.......-..|||+|||+|.++..+++.. ..++++|++ ......+.++ ..+.++.+|...
T Consensus 93 te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis--~~~l~~a~~n~~~~~~~~i~~~~~d~~~- 169 (275)
T PRK09328 93 TEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDIS--PEALAVARRNAKHGLGARVEFLQGDWFE- 169 (275)
T ss_pred cHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHhCCCCcEEEEEccccC-
Confidence 46666666532221122345999999999999999854 677775544 3333322221 136777777643
Q ss_pred CCCCCcccEEEEcccccccC-----C------------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHH
Q 047630 293 PFFDNTLDIVHSMHVLSNWI-----P------------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~-----~------------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~ 349 (392)
++.+++||+|+++..+.... . -+..+.++.++.++|||||++++..-. ...+.
T Consensus 170 ~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~----~~~~~ 245 (275)
T PRK09328 170 PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY----DQGEA 245 (275)
T ss_pred cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc----hHHHH
Confidence 23467899999974432110 0 122457888999999999999986422 22345
Q ss_pred HHHHHHHcCCeEEEEE
Q 047630 350 YVPLIESVGFNKLKWV 365 (392)
Q Consensus 350 l~~ll~~aGf~~i~w~ 365 (392)
+.+++++.||..+...
T Consensus 246 ~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 246 VRALLAAAGFADVETR 261 (275)
T ss_pred HHHHHHhCCCceeEEe
Confidence 7888899999877664
No 98
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.92 E-value=5.2e-09 Score=105.57 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=69.9
Q ss_pred EEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcC--CCCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRL--PFFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~L--pf~d~sFDlV~s~~~l 308 (392)
.+||||||+|.++..+++.. ..++| +|+..+..+ .+.+++ .+.++.+|+..+ .++++++|.|++.+..
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~~~~iG--IEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPNKLFIG--IEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCCCCEEE--EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 45999999999999999975 45666 555444443 233334 367888887654 5788999999987654
Q ss_pred cccCCchh----HHHHHHHHHHcccCCcEEEEEe
Q 047630 309 SNWIPTTL----LHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 309 ~~~~~~~~----l~~~L~el~RvLKPGG~lii~~ 338 (392)
.|..... .+.++.++.|+|+|||.+.+..
T Consensus 203 -PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 203 -PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred -CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4432221 2579999999999999997764
No 99
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.90 E-value=6.4e-09 Score=97.02 Aligned_cols=96 Identities=16% Similarity=0.072 Sum_probs=66.6
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHcCC---EEEEEecCCCchhHHHHH----hcC--CccEEEeccCcCCCCCCc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMERNI---TIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~---~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~Lpf~d~s 298 (392)
.+.+.++.++ ||||||+|.++..+++... .|+++| ++....+.+. +.+ .+.++.+|........+.
T Consensus 72 ~l~~~~~~~V---LDiG~GsG~~a~~la~~~~~~g~V~~vD--~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 146 (215)
T TIGR00080 72 LLELKPGMKV---LEIGTGSGYQAAVLAEIVGRDGLVVSIE--RIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP 146 (215)
T ss_pred HhCCCCcCEE---EEECCCccHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence 3445555555 9999999999999998533 477744 4344443322 223 367888887665444578
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
||+|++.....+ +...+.+.|||||++++.
T Consensus 147 fD~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 147 YDRIYVTAAGPK---------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCEEEEcCCccc---------ccHHHHHhcCcCcEEEEE
Confidence 999998766543 346688999999999886
No 100
>PLN03075 nicotianamine synthase; Provisional
Probab=98.90 E-value=1.3e-08 Score=99.31 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=67.8
Q ss_pred cEEEEEcCCcchHHHH-HH-Hc--CCEEEEEecCCCchhHHHH---H-h-cC---CccEEEeccCcCCCCCCcccEEEEc
Q 047630 238 RIGLDIGGGVATFAVR-MM-ER--NITIVTTSMNLNGPFNNFI---A-S-RG---VVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~-La-~~--g~~vvg~~iD~~a~~~~~a---a-~-rg---~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
+.|+|||||.|.++.. ++ .. +..++++|+|. ...+.+ . + .+ .+.|..+|+..++-..+.||+|++.
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~--~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP--SANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 4459999998855433 33 23 34577755443 443321 2 1 22 3889999987764335789999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
++++|.. +..+++++++.+.|+|||+|++...
T Consensus 203 -ALi~~dk-~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 203 -ALVGMDK-EEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -ccccccc-ccHHHHHHHHHHhcCCCcEEEEecc
Confidence 8888733 4446899999999999999999863
No 101
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.90 E-value=3.1e-08 Score=91.52 Aligned_cols=125 Identities=22% Similarity=0.332 Sum_probs=83.1
Q ss_pred EEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhH--HHHHhcCC----ccEEEeccCc-CCC------CCCcccEEEE
Q 047630 240 GLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFN--NFIASRGV----VPLYISISQR-LPF------FDNTLDIVHS 304 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~--~~aa~rg~----i~~~~~d~~~-Lpf------~d~sFDlV~s 304 (392)
|||||+|||..+.++++. ..+..-+|+|...-.+ +.+.+.+. .++....... .+. ..++||+|+|
T Consensus 29 vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~ 108 (204)
T PF06080_consen 29 VLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFC 108 (204)
T ss_pred EEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeee
Confidence 499999999999999995 4455555555422112 22334332 2222221111 232 3568999999
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccch-----------------------HHHHHHHHHHcCCeE
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL-----------------------EDVYVPLIESVGFNK 361 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l-----------------------~~~l~~ll~~aGf~~ 361 (392)
.+++| +.+....+.+++.+.++|++||.|++...|...+.. .+++.++..+.|++.
T Consensus 109 ~N~lH-I~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l 187 (204)
T PF06080_consen 109 INMLH-ISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL 187 (204)
T ss_pred hhHHH-hcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence 99984 477788899999999999999999888654332211 455788888888876
Q ss_pred EEEE
Q 047630 362 LKWV 365 (392)
Q Consensus 362 i~w~ 365 (392)
.+-.
T Consensus 188 ~~~~ 191 (204)
T PF06080_consen 188 EEDI 191 (204)
T ss_pred Cccc
Confidence 5543
No 102
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=1.2e-08 Score=95.20 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=68.3
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNT 298 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~s 298 (392)
.+.+.++.++ ||||||+|+++..+++. +.++++ +|++....+.+.+ .+ .+.++.+|........+.
T Consensus 71 ~l~~~~g~~V---LdIG~GsG~~t~~la~~~~~~~~V~~--vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~ 145 (212)
T PRK13942 71 LLDLKEGMKV---LEIGTGSGYHAAVVAEIVGKSGKVVT--IERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAP 145 (212)
T ss_pred HcCCCCcCEE---EEECCcccHHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCC
Confidence 3345566666 99999999999988874 257888 4453444443322 23 367888887766556789
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
||+|++.....+ +...+.+.|||||++++..
T Consensus 146 fD~I~~~~~~~~---------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 146 YDRIYVTAAGPD---------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCEEEECCCccc---------chHHHHHhhCCCcEEEEEE
Confidence 999999876544 2356778999999998863
No 103
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=2.6e-08 Score=96.64 Aligned_cols=114 Identities=18% Similarity=0.305 Sum_probs=74.9
Q ss_pred CCcHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHH----HHHhcCCc--cEEEecc
Q 047630 218 NGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNN----FIASRGVV--PLYISIS 289 (392)
Q Consensus 218 ~~~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~----~aa~rg~i--~~~~~d~ 289 (392)
+.|.+.+++.+... .+++| ||+|||.|.+++.+++.++ .++-+|+|. ...+ .+..++.- .++.++.
T Consensus 144 D~GS~lLl~~l~~~-~~~~v---lDlGCG~Gvlg~~la~~~p~~~vtmvDvn~--~Av~~ar~Nl~~N~~~~~~v~~s~~ 217 (300)
T COG2813 144 DKGSRLLLETLPPD-LGGKV---LDLGCGYGVLGLVLAKKSPQAKLTLVDVNA--RAVESARKNLAANGVENTEVWASNL 217 (300)
T ss_pred ChHHHHHHHhCCcc-CCCcE---EEeCCCccHHHHHHHHhCCCCeEEEEecCH--HHHHHHHHhHHHcCCCccEEEEecc
Confidence 34577777766533 23456 9999999999999999775 566655443 3222 23333321 2334433
Q ss_pred CcCCCCCCcccEEEEcccccccCC--chhHHHHHHHHHHcccCCcEEEEEee
Q 047630 290 QRLPFFDNTLDIVHSMHVLSNWIP--TTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 290 ~~Lpf~d~sFDlV~s~~~l~~~~~--~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
-.+..+ +||+|+|+-.+|.-.. ..-.++++.+..+.|++||.|+|..-
T Consensus 218 -~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 218 -YEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred -cccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 334444 8999999999875321 12234799999999999999988864
No 104
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.87 E-value=5e-09 Score=87.42 Aligned_cols=98 Identities=19% Similarity=0.296 Sum_probs=70.0
Q ss_pred EEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCC--CCCCcccEEEEcccc
Q 047630 239 IGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLP--FFDNTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lp--f~d~sFDlV~s~~~l 308 (392)
+|||+|||+|.++..+++.+ ..++++|+|. ...+.+. ..+ .+.++++|...+. +.+++||+|+++..+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~--~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDP--EAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSH--HHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECH--HHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 35999999999999999988 8888866554 3322222 122 3688999987775 778999999999766
Q ss_pred cccCC-----chhHHHHHHHHHHcccCCcEEEEEe
Q 047630 309 SNWIP-----TTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 309 ~~~~~-----~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..... ......+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 54211 1234678999999999999997753
No 105
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.87 E-value=6.8e-08 Score=99.34 Aligned_cols=138 Identities=12% Similarity=0.158 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHH----HhcCC-ccEEEeccCcCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFI----ASRGV-VPLYISISQRLP 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~a----a~rg~-i~~~~~d~~~Lp 293 (392)
...++..++...++.+| ||+|||+|..+..+++.. ..+++ +|++..+...+ .+.|. +.++++|...++
T Consensus 232 ~s~~~~~~l~~~~g~~V---LDlgaG~G~~t~~la~~~~~~~v~a--~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~ 306 (427)
T PRK10901 232 AAQLAATLLAPQNGERV---LDACAAPGGKTAHILELAPQAQVVA--LDIDAQRLERVRENLQRLGLKATVIVGDARDPA 306 (427)
T ss_pred HHHHHHHHcCCCCCCEE---EEeCCCCChHHHHHHHHcCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch
Confidence 44455556666666666 999999999999999864 47777 44534444322 22232 467788887654
Q ss_pred --CCCCcccEEEEcccccc-----------c-CCchh-------HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHH
Q 047630 294 --FFDNTLDIVHSMHVLSN-----------W-IPTTL-------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVP 352 (392)
Q Consensus 294 --f~d~sFDlV~s~~~l~~-----------~-~~~~~-------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ 352 (392)
+.+++||.|++...... | ..+.+ ..+++.++.++|||||++++....-..++-.+.+..
T Consensus 307 ~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~ 386 (427)
T PRK10901 307 QWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKA 386 (427)
T ss_pred hhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHH
Confidence 34678999995432111 1 11111 246899999999999999988754333333455777
Q ss_pred HHHHc-CCeEEE
Q 047630 353 LIESV-GFNKLK 363 (392)
Q Consensus 353 ll~~a-Gf~~i~ 363 (392)
.+++. +|+.+.
T Consensus 387 ~l~~~~~~~~~~ 398 (427)
T PRK10901 387 FLARHPDAELLD 398 (427)
T ss_pred HHHhCCCCEEec
Confidence 77664 566554
No 106
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.85 E-value=3.3e-08 Score=97.09 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=66.8
Q ss_pred EEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhc------CC-ccEEEeccCc-CCCCCCc----ccEEEE
Q 047630 240 GLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASR------GV-VPLYISISQR-LPFFDNT----LDIVHS 304 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~r------g~-i~~~~~d~~~-Lpf~d~s----FDlV~s 304 (392)
|||+|||+|..+..|++. +.++++ +|++..+.+.++++ +. +.++++|..+ +++.... ..++++
T Consensus 67 iLELGcGtG~~t~~Ll~~l~~~~~~~~--iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 67 LVELGSGSSRKTRLLLDALRQPARYVP--IDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred EEecCCCcchhHHHHHHhhccCCeEEE--EECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 499999999999999886 578888 55545555443332 11 4557888765 4443332 234444
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
...++++ +++....+|++++++|+|||.|++..-
T Consensus 145 gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 145 GSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred cccccCC-CHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 4566664 566678999999999999999988653
No 107
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.85 E-value=3.5e-08 Score=91.75 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=86.2
Q ss_pred cccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHh-----c-CCccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 236 TIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIAS-----R-GVVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~-----r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
....+||.|+|-|+++..+.-. .-+|-. +++...+.+.+.+ . +...+++...+++....++||+|++.+++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDl--VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDL--VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEE--EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEE--eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4566799999999999977654 344544 4454455554442 1 22456667777775556799999999999
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeecccccc------------hHHHHHHHHHHcCCeEEEEEEeec
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ------------LEDVYVPLIESVGFNKLKWVVGRK 369 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~------------l~~~l~~ll~~aGf~~i~w~~~~k 369 (392)
.|+ .++++-.+|+.+...|+|||++++-+-....+. -.+.++++++++|++.++-.....
T Consensus 133 ghL-TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 133 GHL-TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp GGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred ccC-CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 995 566677999999999999999998874333221 167799999999999998775543
No 108
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.85 E-value=4.4e-08 Score=95.52 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=77.4
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhcC---CccEEEeccCcCCCCCCcccEEEEccccc
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~ 309 (392)
.|||+|||+|.++..+++. +..++++|++ ....+ .+...+ .+.++.+|... ++++++||+|+++-...
T Consensus 124 ~vLDlG~GsG~i~~~la~~~~~~~v~avDis--~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 124 RILDLCTGSGCIAIACAYAFPEAEVDAVDIS--PDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred EEEEEeCchhHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 4599999999999999985 4578885544 34333 222333 26778888643 23456899999973221
Q ss_pred c------c------CCc----------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 310 N------W------IPT----------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 310 ~------~------~~~----------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
. . .+. ...+.++.++.++|+|||++++...... +.+.+++.+.||.-..
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-----~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-----EALEEAYPDVPFTWLE 271 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-----HHHHHHHHhCCCceee
Confidence 1 0 000 1235789999999999999998764321 3477788888875443
No 109
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.82 E-value=6.8e-08 Score=98.25 Aligned_cols=136 Identities=18% Similarity=0.170 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhC-CCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHH----hcC-CccEEEeccCcC
Q 047630 221 LDFSIDEVLATK-KPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIA----SRG-VVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~-~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa----~rg-~i~~~~~d~~~L 292 (392)
.+.+++.++... ++. .|||+|||+|.++..+++. +..++++|+| ....+.+. +.+ .+.++.+|....
T Consensus 238 TE~LVe~aL~~l~~~~---rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS--~~ALe~AreNa~~~g~rV~fi~gDl~e~ 312 (423)
T PRK14966 238 TEHLVEAVLARLPENG---RVWDLGTGSGAVAVTVALERPDAFVRASDIS--PPALETARKNAADLGARVEFAHGSWFDT 312 (423)
T ss_pred HHHHHHHhhhccCCCC---EEEEEeChhhHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCcEEEEEcchhcc
Confidence 677777776533 333 3599999999999998864 5678885544 34443222 223 367888887543
Q ss_pred CC-CCCcccEEEEcccccccCC----------------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHH
Q 047630 293 PF-FDNTLDIVHSMHVLSNWIP----------------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349 (392)
Q Consensus 293 pf-~d~sFDlV~s~~~l~~~~~----------------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~ 349 (392)
.+ .+++||+|+|+.....-.+ .+..+.++.++.+.|+|||.+++..-.. ..+.
T Consensus 313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~----Q~e~ 388 (423)
T PRK14966 313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD----QGAA 388 (423)
T ss_pred ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc----HHHH
Confidence 33 2457999999864421100 0123467888889999999998765443 2345
Q ss_pred HHHHHHHcCCeEEEEE
Q 047630 350 YVPLIESVGFNKLKWV 365 (392)
Q Consensus 350 l~~ll~~aGf~~i~w~ 365 (392)
+.+++++.||..++..
T Consensus 389 V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 389 VRGVLAENGFSGVETL 404 (423)
T ss_pred HHHHHHHCCCcEEEEE
Confidence 7778888999876543
No 110
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.82 E-value=5.1e-08 Score=94.95 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=85.6
Q ss_pred HHHHHHHHHhh-CCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHH----HHhcC---CccEEEeccC
Q 047630 221 LDFSIDEVLAT-KKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~l-~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~ 290 (392)
.+.+++.++.. .+......|||+|||+|.++..++... ..++++|++. ..... +...+ .+.++.+|..
T Consensus 98 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~--~al~~a~~n~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 98 TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP--DALAVAEENAEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEECchh
Confidence 56666665532 111111345999999999999999853 5788855443 33332 22223 2677888765
Q ss_pred cCCCCCCcccEEEEccccccc------------CCc----------hhHHHHHHHHHHcccCCcEEEEEeecccccchHH
Q 047630 291 RLPFFDNTLDIVHSMHVLSNW------------IPT----------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348 (392)
Q Consensus 291 ~Lpf~d~sFDlV~s~~~l~~~------------~~~----------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~ 348 (392)
. ++++++||+|+++...... .+. ...+.++.++.+.|+|||++++....... +
T Consensus 176 ~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~----~ 250 (284)
T TIGR00536 176 E-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ----K 250 (284)
T ss_pred c-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH----H
Confidence 4 3445589999997322110 110 13567899999999999999888654433 3
Q ss_pred HHHHHHH-HcCCeEEEE
Q 047630 349 VYVPLIE-SVGFNKLKW 364 (392)
Q Consensus 349 ~l~~ll~-~aGf~~i~w 364 (392)
.+.+++. ..||..+..
T Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 251 SLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHhcCCCceeEE
Confidence 3555666 468876655
No 111
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=1.2e-07 Score=97.80 Aligned_cols=161 Identities=14% Similarity=0.072 Sum_probs=100.2
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~ 291 (392)
...++..++...++..| ||+|||+|..+..+++. ...+++ +|++..+... +.+.|. +.++.+|...
T Consensus 240 ~s~l~~~~l~~~~g~~V---LDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~ 314 (434)
T PRK14901 240 SAQLVAPLLDPQPGEVI---LDACAAPGGKTTHIAELMGDQGEIWA--VDRSASRLKKLQENAQRLGLKSIKILAADSRN 314 (434)
T ss_pred HHHHHHHHhCCCCcCEE---EEeCCCCchhHHHHHHHhCCCceEEE--EcCCHHHHHHHHHHHHHcCCCeEEEEeCChhh
Confidence 44455555655666666 99999999999999884 246777 5554444432 333342 6777888877
Q ss_pred CC----CCCCcccEEEEc------ccccccC------Cchh-------HHHHHHHHHHcccCCcEEEEEeecccccchHH
Q 047630 292 LP----FFDNTLDIVHSM------HVLSNWI------PTTL-------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348 (392)
Q Consensus 292 Lp----f~d~sFDlV~s~------~~l~~~~------~~~~-------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~ 348 (392)
++ +.+++||.|++. .++.+-. .+++ ..++|.++.++|||||+|++.+.....++..+
T Consensus 315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~ 394 (434)
T PRK14901 315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEA 394 (434)
T ss_pred cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHH
Confidence 65 456789999963 2222210 0111 35789999999999999998875554455556
Q ss_pred HHHHHHHHc-CCeEEEEEEeeccCCCCcccceeeEEEEEcC
Q 047630 349 VYVPLIESV-GFNKLKWVVGRKLDRGPELREMYLSALLEKP 388 (392)
Q Consensus 349 ~l~~ll~~a-Gf~~i~w~~~~k~d~~~~~~e~ylsai~~Kp 388 (392)
.+...+++. +|+..... ...-......+.|+.+.++|.
T Consensus 395 ~v~~~l~~~~~~~~~~~~--~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 395 QIEQFLARHPDWKLEPPK--QKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred HHHHHHHhCCCcEecCCC--CccCCCCCCCCcEEEEEEEeC
Confidence 677778775 56643210 001111123455666888885
No 112
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.80 E-value=8.7e-08 Score=88.01 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=65.3
Q ss_pred HHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHH----hcC--CccEEEeccCc-CCCCC
Q 047630 226 DEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQR-LPFFD 296 (392)
Q Consensus 226 ~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~-Lpf~d 296 (392)
...+.+.+++.+ ||+|||+|.++..+++. +..++++| ++..+.+.+. +.+ .+.++.+|+.. ++...
T Consensus 33 ~~~l~~~~~~~V---LDiG~G~G~~~~~la~~~~~~~V~~vD--~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 33 ISQLRLEPDSVL---WDIGAGTGTIPVEAGLLCPKGRVIAIE--RDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHhcCCCCCCEE---EEeCCCCCHHHHHHHHHCCCCEEEEEe--CCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC
Confidence 333444444545 99999999999998864 46788844 5344443322 223 25677777643 22222
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
..+|.++... ...++.+++++.++|+|||++++....
T Consensus 108 ~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 108 PAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 3467665421 123467999999999999999888643
No 113
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.80 E-value=2e-08 Score=94.06 Aligned_cols=103 Identities=16% Similarity=0.246 Sum_probs=69.5
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCC-----ccEEEeccCcCCC--CC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGV-----VPLYISISQRLPF--FD 296 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~-----i~~~~~d~~~Lpf--~d 296 (392)
++..+....++.+ .++|+|||+|.-+.-+++..-+|+++ |+++.+...+.+.-. .+....+.+..++ .+
T Consensus 23 w~~~ia~~~~~h~--~a~DvG~G~Gqa~~~iae~~k~VIat--D~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e 98 (261)
T KOG3010|consen 23 WFKKIASRTEGHR--LAWDVGTGNGQAARGIAEHYKEVIAT--DVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGE 98 (261)
T ss_pred HHHHHHhhCCCcc--eEEEeccCCCcchHHHHHhhhhheee--cCCHHHHHHhhcCCCcccccCCccccccccccccCCC
Confidence 3444554554433 56999999997777778887789984 454455555544422 2222223333344 49
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEE
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~l 334 (392)
++.|+|+|..++|. -+++.++++++|+||+.|-+
T Consensus 99 ~SVDlI~~Aqa~HW----Fdle~fy~~~~rvLRk~Gg~ 132 (261)
T KOG3010|consen 99 ESVDLITAAQAVHW----FDLERFYKEAYRVLRKDGGL 132 (261)
T ss_pred cceeeehhhhhHHh----hchHHHHHHHHHHcCCCCCE
Confidence 99999999999965 46678999999999987733
No 114
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.79 E-value=4e-08 Score=77.52 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=69.6
Q ss_pred EEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHH---hcC---CccEEEeccCcCCC-CCCcccEEEEccccccc
Q 047630 240 GLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIA---SRG---VVPLYISISQRLPF-FDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa---~rg---~i~~~~~d~~~Lpf-~d~sFDlV~s~~~l~~~ 311 (392)
++|+|||.|.++..+++ .+..++++|++. .....+. +.. .+.++..+...... ..++||+|++..+++++
T Consensus 2 ildig~G~G~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 2 VLDLGCGTGALALALASGPGARVTGVDISP--VALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred eEEEcCCccHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 59999999999999998 567888855443 3333222 111 35677777666553 56789999999998773
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
......+++.+.+.|||||.+++.
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 356678999999999999999876
No 115
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.78 E-value=1.2e-07 Score=93.58 Aligned_cols=134 Identities=15% Similarity=0.083 Sum_probs=82.2
Q ss_pred HHHHHHHHHh-hCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhcC---CccEEEeccC
Q 047630 221 LDFSIDEVLA-TKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASRG---VVPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~-l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~ 290 (392)
.+.+++..+. ..+......|||+|||+|.++..++.. +..++++|+| ....+ .+...+ .+.++.+|..
T Consensus 117 te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis--~~al~~A~~n~~~~~l~~~i~~~~~D~~ 194 (307)
T PRK11805 117 IAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDIS--PDALAVAEINIERHGLEDRVTLIESDLF 194 (307)
T ss_pred hHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCCcEEEEECchh
Confidence 4555555442 222111134599999999999999986 4578885544 33333 222333 2678888864
Q ss_pred cCCCCCCcccEEEEcccccc------------cCCc----------hhHHHHHHHHHHcccCCcEEEEEeecccccchHH
Q 047630 291 RLPFFDNTLDIVHSMHVLSN------------WIPT----------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348 (392)
Q Consensus 291 ~Lpf~d~sFDlV~s~~~l~~------------~~~~----------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~ 348 (392)
. ++++++||+|+++-.... ..+. ...+.+++++.++|+|||.+++..... .+
T Consensus 195 ~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-----~~ 268 (307)
T PRK11805 195 A-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-----RV 268 (307)
T ss_pred h-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-----HH
Confidence 3 234568999999732211 0010 223578999999999999999875432 22
Q ss_pred HHHHHHHHcCCeEE
Q 047630 349 VYVPLIESVGFNKL 362 (392)
Q Consensus 349 ~l~~ll~~aGf~~i 362 (392)
.+.+++...||.-+
T Consensus 269 ~~~~~~~~~~~~~~ 282 (307)
T PRK11805 269 HLEEAYPDVPFTWL 282 (307)
T ss_pred HHHHHHhhCCCEEE
Confidence 36667777775443
No 116
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.77 E-value=7.7e-08 Score=89.79 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=88.6
Q ss_pred CCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH-------HHHhcCCccEEEeccCcC--CCCCCcccEEE
Q 047630 234 PGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN-------FIASRGVVPLYISISQRL--PFFDNTLDIVH 303 (392)
Q Consensus 234 ~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~-------~aa~rg~i~~~~~d~~~L--pf~d~sFDlV~ 303 (392)
+.+| ||...|-|+.++...++|+ .|+.+..|.+.-..+ ...+. .++++.+|+.++ .|.|++||+|+
T Consensus 135 G~rV---LDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~-~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 135 GERV---LDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEI-AIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred CCEe---eeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccccc-ccEEecccHHHHHhcCCccccceEe
Confidence 4555 9999999999999999998 888877665432221 11111 268888986654 57899999998
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc----cccchHHHHHHHHHHcCCeEEEEE
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC----VGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~----~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
---.-......---+++.+|++|+|||||.++-..-.. ...+++....+.+.++||.+++-.
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeee
Confidence 54221111112234678999999999999996443211 234557778899999999988754
No 117
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.6e-07 Score=91.52 Aligned_cols=133 Identities=17% Similarity=0.262 Sum_probs=84.5
Q ss_pred HHHHHHHHHh-hCCCCcccEEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHH--HHHhcCCccEEEeccCcCCCC
Q 047630 221 LDFSIDEVLA-TKKPGTIRIGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNN--FIASRGVVPLYISISQRLPFF 295 (392)
Q Consensus 221 ~~~lI~~ll~-l~~~~~ir~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~--~aa~rg~i~~~~~d~~~Lpf~ 295 (392)
.+.+++.++. ...... .|||+|||+|..+..++.... .|+++|++.++-..+ ++...+...+......-+.--
T Consensus 96 Te~Lve~~l~~~~~~~~--~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~ 173 (280)
T COG2890 96 TELLVEAALALLLQLDK--RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL 173 (280)
T ss_pred hHHHHHHHHHhhhhcCC--cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc
Confidence 6777777552 222232 459999999999999999765 888877665332222 444445433222222112222
Q ss_pred CCcccEEEEcccccccC-----C-----------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHH
Q 047630 296 DNTLDIVHSMHVLSNWI-----P-----------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPL 353 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~-----~-----------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~l 353 (392)
.++||+|+++-....-. + -+....++.++.+.|+|||.+++..-... .+.+.++
T Consensus 174 ~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q----~~~v~~~ 249 (280)
T COG2890 174 RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ----GEAVKAL 249 (280)
T ss_pred CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc----HHHHHHH
Confidence 34899999985443211 0 01356788999999999999998875544 3447779
Q ss_pred HHHcCC
Q 047630 354 IESVGF 359 (392)
Q Consensus 354 l~~aGf 359 (392)
+.+.|+
T Consensus 250 ~~~~~~ 255 (280)
T COG2890 250 FEDTGF 255 (280)
T ss_pred HHhcCC
Confidence 999994
No 118
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.76 E-value=1.2e-07 Score=90.06 Aligned_cols=124 Identities=17% Similarity=0.163 Sum_probs=84.6
Q ss_pred ccEEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHhcC--------CccEEEeccCcCC--CCCCcccEEEE
Q 047630 237 IRIGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIASRG--------VVPLYISISQRLP--FFDNTLDIVHS 304 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~rg--------~i~~~~~d~~~Lp--f~d~sFDlV~s 304 (392)
...|||+|||+|..+..++++ . +.+++ +++ .+.+...+.++ .+.++++|+..+. ..-.+||+|+|
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~--VEi-q~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVG--VEI-QEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEE--EEe-CHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 455599999999999999997 3 67777 445 23333333322 3788899987763 23457999999
Q ss_pred cccccccCC---------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 305 MHVLSNWIP---------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 305 ~~~l~~~~~---------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+-.+..... ...++.+++-..++|||||.+.+..... .+ .++.+++.+.+|...+...+
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---rl-~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---RL-AEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---HH-HHHHHHHHhcCCCceEEEEe
Confidence 966643221 2247789999999999999998876332 22 33677788877766555444
No 119
>PHA03411 putative methyltransferase; Provisional
Probab=98.76 E-value=9.6e-08 Score=92.15 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=82.4
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc-CCccEEEeccCcCCCCCCcccEEEEcccccccCCch
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR-GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r-g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
+|||+|||+|.++..++++ +..++++| ++..+.+.+.++ ..+.++++|+..+. .+.+||+|+++..+++....+
T Consensus 67 rVLDLGcGsGilsl~la~r~~~~~V~gVD--isp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRCKPEKIVCVE--LNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchh
Confidence 3499999999999888774 46888855 433444444333 23678889988765 356899999998887632211
Q ss_pred --h---------------HHHHHHHHHHcccCCcEEEEEeec---ccccchHHHHHHHHHHcCCeE
Q 047630 316 --L---------------LHFLMFDIYRVLRPGGLFWLDHFF---CVGAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 316 --~---------------l~~~L~el~RvLKPGG~lii~~~~---~~~~~l~~~l~~ll~~aGf~~ 361 (392)
. +..++....++|+|+|.+++.-.. -...--.++|+.++++.||..
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 1 356788889999999977655211 111222677999999999864
No 120
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.75 E-value=6.5e-08 Score=89.87 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=66.4
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCCcccE
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDNTLDI 301 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~sFDl 301 (392)
.+.+.++.+| ||+|||+|.++..+++....++++|++ ....+.+.+ .+ .+.+..+|........+.||+
T Consensus 73 ~l~~~~~~~V---LeiG~GsG~~t~~la~~~~~v~~vd~~--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 73 LLELKPGDRV---LEIGTGSGYQAAVLAHLVRRVFSVERI--KTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred hcCCCCCCEE---EEECCCccHHHHHHHHHhCEEEEEeCC--HHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCE
Confidence 3444555555 999999999999888876678885543 343332222 23 266777776443223478999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|++...+.+ +..++.+.|+|||.+++...
T Consensus 148 I~~~~~~~~---------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAAPE---------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEccCchh---------hhHHHHHhcCCCcEEEEEEc
Confidence 999876544 34667899999999988753
No 121
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.75 E-value=2.1e-07 Score=96.15 Aligned_cols=139 Identities=13% Similarity=0.128 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~ 291 (392)
...++...+...++.+| ||+|||+|..+..+++. +..+++ +|++....+ .+.+.|. +.++++|...
T Consensus 238 ~s~lv~~~l~~~~g~~V---LDlgaG~G~~t~~la~~~~~~~~v~a--vDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~ 312 (444)
T PRK14902 238 SSMLVAPALDPKGGDTV---LDACAAPGGKTTHIAELLKNTGKVVA--LDIHEHKLKLIEENAKRLGLTNIETKALDARK 312 (444)
T ss_pred HHHHHHHHhCCCCCCEE---EEeCCCCCHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEeCCccc
Confidence 44556666666565555 99999999999999874 356777 455344433 2233342 6778888776
Q ss_pred CC-CCCCcccEEEEcccccc-----------c-CCchh-------HHHHHHHHHHcccCCcEEEEEeecccccchHHHHH
Q 047630 292 LP-FFDNTLDIVHSMHVLSN-----------W-IPTTL-------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYV 351 (392)
Q Consensus 292 Lp-f~d~sFDlV~s~~~l~~-----------~-~~~~~-------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~ 351 (392)
++ ...++||+|++...... | ..+.+ ...+|.++.++|||||.+++....-..++....+.
T Consensus 313 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~ 392 (444)
T PRK14902 313 VHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIE 392 (444)
T ss_pred ccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHH
Confidence 53 11278999997532111 0 01111 24689999999999999998764433334445566
Q ss_pred HHHHHc-CCeEEEE
Q 047630 352 PLIESV-GFNKLKW 364 (392)
Q Consensus 352 ~ll~~a-Gf~~i~w 364 (392)
..+++. +|+.+..
T Consensus 393 ~~l~~~~~~~~~~~ 406 (444)
T PRK14902 393 AFLEEHPEFELVPL 406 (444)
T ss_pred HHHHhCCCcEEecc
Confidence 677765 3776553
No 122
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.75 E-value=9.9e-08 Score=89.95 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=84.3
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh-----------------c-CCccEEEeccCcCCCC---CCc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS-----------------R-GVVPLYISISQRLPFF---DNT 298 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~-----------------r-g~i~~~~~d~~~Lpf~---d~s 298 (392)
||+.|||.|..+..|+++|..|+|+|++. ...+.+.+ + ..+.++++|+..++.. .+.
T Consensus 47 vLvPgCGkg~D~~~LA~~G~~V~GvDlS~--~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~ 124 (226)
T PRK13256 47 CLIPMCGCSIDMLFFLSKGVKVIGIELSE--KAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPV 124 (226)
T ss_pred EEEeCCCChHHHHHHHhCCCcEEEEecCH--HHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCC
Confidence 39999999999999999999999955443 33332211 1 1368889999988642 268
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc-------chHHHHHHHHHH
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA-------QLEDVYVPLIES 356 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~-------~l~~~l~~ll~~ 356 (392)
||+|+-..+++++ +++...+..+.+.++|+|||.+++..+..... -..+++++++..
T Consensus 125 fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~ 188 (226)
T PRK13256 125 FDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSA 188 (226)
T ss_pred cCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccC
Confidence 9999999999885 77888899999999999999997776532111 115567777654
No 123
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.74 E-value=1.4e-07 Score=90.41 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhCC-CCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHH----HHhcCCccEEEeccCc-C
Q 047630 221 LDFSIDEVLATKK-PGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNF----IASRGVVPLYISISQR-L 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~-~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~----aa~rg~i~~~~~d~~~-L 292 (392)
.+.+++.++.... ...-..|||+|||+|.++..+++. +..++++|+|. ...+. +...+ +.++.+|... +
T Consensus 70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~--~al~~A~~N~~~~~-~~~~~~D~~~~l 146 (251)
T TIGR03704 70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDP--AAVRCARRNLADAG-GTVHEGDLYDAL 146 (251)
T ss_pred HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcC-CEEEEeechhhc
Confidence 6777777665332 111124599999999999999874 55788855543 33332 22233 4778888654 2
Q ss_pred CC-CCCcccEEEEcccccccC-----Cc------------------hhHHHHHHHHHHcccCCcEEEEEeecccccchHH
Q 047630 293 PF-FDNTLDIVHSMHVLSNWI-----PT------------------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348 (392)
Q Consensus 293 pf-~d~sFDlV~s~~~l~~~~-----~~------------------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~ 348 (392)
+- ..++||+|+++-...... ++ +.++.++..+.++|||||++++...... ..
T Consensus 147 ~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~----~~ 222 (251)
T TIGR03704 147 PTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ----AP 222 (251)
T ss_pred chhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch----HH
Confidence 21 135799999985443110 00 1135788888999999999998854332 23
Q ss_pred HHHHHHHHcCCeE
Q 047630 349 VYVPLIESVGFNK 361 (392)
Q Consensus 349 ~l~~ll~~aGf~~ 361 (392)
.+..++++.||+.
T Consensus 223 ~v~~~l~~~g~~~ 235 (251)
T TIGR03704 223 LAVEAFARAGLIA 235 (251)
T ss_pred HHHHHHHHCCCCc
Confidence 4777888888754
No 124
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.73 E-value=3.3e-07 Score=88.42 Aligned_cols=132 Identities=16% Similarity=0.088 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~ 291 (392)
...+...++...++.+| ||+|||+|..+..+++. .-.+++ +|++....+ .+.+.+ .+.++.+|...
T Consensus 59 ~s~~~~~~l~~~~g~~V---LDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~ 133 (264)
T TIGR00446 59 SSMIPPLALEPDPPERV---LDMAAAPGGKTTQISALMKNEGAIVA--NEFSKSRTKVLIANINRCGVLNVAVTNFDGRV 133 (264)
T ss_pred HHHHHHHHhCCCCcCEE---EEECCCchHHHHHHHHHcCCCCEEEE--EcCCHHHHHHHHHHHHHcCCCcEEEecCCHHH
Confidence 34445555656666666 99999999999988873 236777 555444443 233334 25677778777
Q ss_pred CCCCCCcccEEEEccccccc------------CCch-------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHH
Q 047630 292 LPFFDNTLDIVHSMHVLSNW------------IPTT-------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVP 352 (392)
Q Consensus 292 Lpf~d~sFDlV~s~~~l~~~------------~~~~-------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ 352 (392)
++...+.||.|++.-..... ..++ ...++|.++.+.|||||+++.+...-..++-++.+..
T Consensus 134 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~ 213 (264)
T TIGR00446 134 FGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDY 213 (264)
T ss_pred hhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHH
Confidence 66556679999974211110 0111 1246999999999999999888754444444555666
Q ss_pred HHHHc
Q 047630 353 LIESV 357 (392)
Q Consensus 353 ll~~a 357 (392)
.+++.
T Consensus 214 ~l~~~ 218 (264)
T TIGR00446 214 LLEKR 218 (264)
T ss_pred HHHhC
Confidence 66653
No 125
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.71 E-value=6e-07 Score=81.63 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=84.9
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcC-CC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRL-PF 294 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~L-pf 294 (392)
+.-..|++.+++.+ +|||||||+.+..++.. .-++++ +|-+....+ ++++-| .+.++.+++-.. +
T Consensus 25 l~ls~L~~~~g~~l---~DIGaGtGsi~iE~a~~~p~~~v~A--Ie~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~- 98 (187)
T COG2242 25 LTLSKLRPRPGDRL---WDIGAGTGSITIEWALAGPSGRVIA--IERDEEALELIERNAARFGVDNLEVVEGDAPEALP- 98 (187)
T ss_pred HHHHhhCCCCCCEE---EEeCCCccHHHHHHHHhCCCceEEE--EecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-
Confidence 33344556677666 99999999999999954 456666 554333333 333334 256667765443 3
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCC-eEEEEEEee
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGF-NKLKWVVGR 368 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf-~~i~w~~~~ 368 (392)
...+||.|+.... -. ++.+|+.+...|||||++++....- +. .....+.+++.|+ +.++.....
T Consensus 99 ~~~~~daiFIGGg-~~------i~~ile~~~~~l~~ggrlV~naitl--E~-~~~a~~~~~~~g~~ei~~v~is~ 163 (187)
T COG2242 99 DLPSPDAIFIGGG-GN------IEEILEAAWERLKPGGRLVANAITL--ET-LAKALEALEQLGGREIVQVQISR 163 (187)
T ss_pred CCCCCCEEEECCC-CC------HHHHHHHHHHHcCcCCeEEEEeecH--HH-HHHHHHHHHHcCCceEEEEEeec
Confidence 2227999998776 23 3569999999999999998885433 22 2336678899999 666655443
No 126
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.71 E-value=1.1e-07 Score=99.68 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=78.0
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
..|||+|||+|.++..++.. +..++++|+|. ...+. +...+ .+.++.+|... ++.+++||+|+++...
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~--~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISL--DAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCH--HHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 35699999999999998874 56788855443 33332 22223 25677777543 2345689999997433
Q ss_pred cccC--------------------Cc---hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 309 SNWI--------------------PT---TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 309 ~~~~--------------------~~---~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
.... .. +....++.++.++|+|||.+++..-.. ..+.+.+++.+.||+.+..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~----q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK----QEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc----hHHHHHHHHHhcCCCceEE
Confidence 2100 01 123457889999999999998864332 2344777888899976644
No 127
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=4.3e-07 Score=93.91 Aligned_cols=136 Identities=14% Similarity=0.101 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~ 291 (392)
...++..++...++..| ||+|||+|..+..+++. +..++++ |++..+.+. +.+.|. +.++.+|+..
T Consensus 238 ~s~l~~~~l~~~~g~~V---LDlgaG~G~kt~~la~~~~~~~~V~av--D~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~ 312 (445)
T PRK14904 238 TQALACLLLNPQPGSTV---LDLCAAPGGKSTFMAELMQNRGQITAV--DRYPQKLEKIRSHASALGITIIETIEGDARS 312 (445)
T ss_pred HHHHHHHhcCCCCCCEE---EEECCCCCHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHHHHhCCCeEEEEeCcccc
Confidence 44455556655565555 99999999988888762 3478784 454444432 233342 5778888877
Q ss_pred CCCCCCcccEEEEc------cccc-----cc-CCchh-------HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHH
Q 047630 292 LPFFDNTLDIVHSM------HVLS-----NW-IPTTL-------LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVP 352 (392)
Q Consensus 292 Lpf~d~sFDlV~s~------~~l~-----~~-~~~~~-------l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ 352 (392)
++ ++++||+|++. ..+. .| ..++. ...+|.++.++|||||++++....-..++-+..+..
T Consensus 313 ~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~ 391 (445)
T PRK14904 313 FS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEA 391 (445)
T ss_pred cc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHH
Confidence 65 56789999963 1111 01 11121 236899999999999999998865544444555677
Q ss_pred HHHHc-CCeEE
Q 047630 353 LIESV-GFNKL 362 (392)
Q Consensus 353 ll~~a-Gf~~i 362 (392)
.+++. +|+.+
T Consensus 392 ~l~~~~~~~~~ 402 (445)
T PRK14904 392 FLQRHPEFSAE 402 (445)
T ss_pred HHHhCCCCEEe
Confidence 77765 46544
No 128
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.69 E-value=4.1e-07 Score=93.58 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH----HHHhcCC-ccE--EEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN----FIASRGV-VPL--YISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~----~aa~rg~-i~~--~~~d~~~ 291 (392)
...++...+...++..| ||+|||+|..+..+++. +..+++ +|++..... .+.+.|. +.+ ..+|...
T Consensus 226 ~s~~~~~~L~~~~g~~V---LDlcag~G~kt~~la~~~~~~~v~a--~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~ 300 (426)
T TIGR00563 226 SAQWVATWLAPQNEETI---LDACAAPGGKTTHILELAPQAQVVA--LDIHEHRLKRVYENLKRLGLTIKAETKDGDGRG 300 (426)
T ss_pred HHHHHHHHhCCCCCCeE---EEeCCCccHHHHHHHHHcCCCeEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence 44555566666666555 99999999999999884 356777 555444443 2333342 122 4445544
Q ss_pred CCC--CCCcccEEEEc------ccccccC------Cch-------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHH
Q 047630 292 LPF--FDNTLDIVHSM------HVLSNWI------PTT-------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVY 350 (392)
Q Consensus 292 Lpf--~d~sFDlV~s~------~~l~~~~------~~~-------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l 350 (392)
.++ .+++||.|++. .++++.. .+. ...++|.++.++|||||.|++++..-..++-...+
T Consensus 301 ~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v 380 (426)
T TIGR00563 301 PSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQI 380 (426)
T ss_pred ccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHH
Confidence 443 56789999963 2232210 111 13579999999999999999987655444445556
Q ss_pred HHHHHHc-CCe
Q 047630 351 VPLIESV-GFN 360 (392)
Q Consensus 351 ~~ll~~a-Gf~ 360 (392)
...+++. +|.
T Consensus 381 ~~~l~~~~~~~ 391 (426)
T TIGR00563 381 KAFLQEHPDFP 391 (426)
T ss_pred HHHHHhCCCCe
Confidence 6777765 343
No 129
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.63 E-value=2.4e-08 Score=99.33 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=65.0
Q ss_pred cEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhcC----------------CccEEEeccCc------CCC
Q 047630 238 RIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASRG----------------VVPLYISISQR------LPF 294 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~rg----------------~i~~~~~d~~~------Lpf 294 (392)
..|||+|||-|.-...+...++ .++|+|++. ...+.+.+|- ...++.+|... ++.
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~--~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKAKIKHYVGIDISE--ESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CeEEEecCCCchhHHHHHhcCCCEEEEEeCCH--HHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 3459999999987777776554 577755433 3333333221 13456666442 222
Q ss_pred CCCcccEEEEccccccc-CCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 295 FDNTLDIVHSMHVLSNW-IPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~-~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
....||+|-|.+++|+. ..++..+.+|.++.+.|||||+|+.+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 33599999999999974 4566777899999999999999987754
No 130
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=4.2e-07 Score=93.70 Aligned_cols=138 Identities=9% Similarity=0.102 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~ 291 (392)
...++..++...++.+| ||+|||+|..+.++++. +..++++| ++..... .+.+.|. +.+.++|...
T Consensus 225 ~s~~~~~~l~~~~g~~V---LD~cagpGgkt~~la~~~~~~g~V~a~D--is~~rl~~~~~n~~r~g~~~v~~~~~Da~~ 299 (431)
T PRK14903 225 SSQIVPLLMELEPGLRV---LDTCAAPGGKTTAIAELMKDQGKILAVD--ISREKIQLVEKHAKRLKLSSIEIKIADAER 299 (431)
T ss_pred HHHHHHHHhCCCCCCEE---EEeCCCccHHHHHHHHHcCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCeEEEEECchhh
Confidence 44555666666666655 99999999999888874 45788855 5344443 2333342 5677888877
Q ss_pred CC-CCCCcccEEEEccccc---ccC---------Cch-------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHH
Q 047630 292 LP-FFDNTLDIVHSMHVLS---NWI---------PTT-------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYV 351 (392)
Q Consensus 292 Lp-f~d~sFDlV~s~~~l~---~~~---------~~~-------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~ 351 (392)
++ +.+++||.|++.-... .+. +++ ...++|.++.+.|||||+++++...-..++..+.+.
T Consensus 300 l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~ 379 (431)
T PRK14903 300 LTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVK 379 (431)
T ss_pred hhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHH
Confidence 76 4567899999742111 110 111 225679999999999999999886655555556677
Q ss_pred HHHHHc-CCeEEE
Q 047630 352 PLIESV-GFNKLK 363 (392)
Q Consensus 352 ~ll~~a-Gf~~i~ 363 (392)
..+++. +|+.+.
T Consensus 380 ~fl~~~~~~~~~~ 392 (431)
T PRK14903 380 RFVYEQKDAEVID 392 (431)
T ss_pred HHHHhCCCcEEec
Confidence 777653 566544
No 131
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.55 E-value=1.9e-07 Score=90.78 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=70.9
Q ss_pred cEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH-HHHhc-------C-----CccEEEeccC------cCCCCCC
Q 047630 238 RIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN-FIASR-------G-----VVPLYISISQ------RLPFFDN 297 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~-~aa~r-------g-----~i~~~~~d~~------~Lpf~d~ 297 (392)
..++|+|||-|.-+...-+.|. ..+| +|+ ++.+. .+.+| . .+.|+.+|.. .+++.+.
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAgI~~~ig--iDI-AevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAGIGEYIG--IDI-AEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccceeccCCcccHhHhhhhcccceEe--eeh-hhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 3349999999998887777665 4666 555 44443 22222 1 1467777743 3566777
Q ss_pred cccEEEEcccccc-cCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 298 TLDIVHSMHVLSN-WIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 298 sFDlV~s~~~l~~-~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+||+|-|.+++|. |...+....+|+++.+.|||||+|+-+.
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 7999999999985 5566777889999999999999998764
No 132
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.55 E-value=1e-07 Score=88.70 Aligned_cols=123 Identities=18% Similarity=0.190 Sum_probs=90.0
Q ss_pred ccEEEEEcCCcchHHHHHHHcCCE-EEEEecCCCchhHHHHHhc---CC-ccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 237 IRIGLDIGGGVATFAVRMMERNIT-IVTTSMNLNGPFNNFIASR---GV-VPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g~~-vvg~~iD~~a~~~~~aa~r---g~-i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
...++|||||.|.+...+...++. ++- +|.+..+.+..+.. ++ ....++|-+.++|.+++||+|+++..+|..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~--~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIM--MDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheee--eecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 455699999999999999998864 344 45545555544433 22 455688999999999999999999999766
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeeccc--------------------------ccchHHHHHHHHHHcCCeEEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV--------------------------GAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~--------------------------~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
.++...+..+...|||+|.|+-.-+... -.. ...+-.++.++||..+...
T Consensus 151 ---NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~q-vrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 151 ---NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQ-VRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred ---ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhh-hhhhhhHHhhcCcccceec
Confidence 4455689999999999999965543210 000 3347788999999877654
No 133
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.52 E-value=4.4e-07 Score=81.42 Aligned_cols=99 Identities=11% Similarity=0.130 Sum_probs=67.8
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEcc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
+.++..+ ||+|||+|.++..+++++..++++|+|. ...+.+.++ ..++++.+|+..+++++..||.|+++.
T Consensus 11 ~~~~~~v---LEiG~G~G~lt~~l~~~~~~v~~vE~~~--~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~ 85 (169)
T smart00650 11 LRPGDTV---LEIGPGKGALTEELLERAARVTAIEIDP--RLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL 85 (169)
T ss_pred CCCcCEE---EEECCCccHHHHHHHhcCCeEEEEECCH--HHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC
Confidence 3344445 9999999999999999988898866553 444433332 246789999999988877899999987
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.++. ..+.+..++.+. .+.++|.|++..
T Consensus 86 Py~~--~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYNI--STPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred Cccc--HHHHHHHHHhcC--CCcceEEEEEEH
Confidence 6542 223333333321 245888887775
No 134
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.48 E-value=6.1e-07 Score=89.01 Aligned_cols=94 Identities=16% Similarity=0.097 Sum_probs=63.8
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHH----HhcC--CccEEEeccCcCCCCCCccc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFI----ASRG--VVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~a----a~rg--~i~~~~~d~~~Lpf~d~sFD 300 (392)
.+.++.++ ||+|||+|.++..+++.. ..|+++ |++....+.+ .+.+ .+.++.+|....+...+.||
T Consensus 77 ~i~~g~~V---LDIG~GtG~~a~~LA~~~~~~g~VvgV--Dis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 77 GLDKGMRV---LEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred CCCCCCEE---EEEeCCccHHHHHHHHhcCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCcc
Confidence 34455555 999999999999999843 257774 4534444322 2233 25677888766555557899
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+|++...+.+ +...+.+.|+|||.+++.
T Consensus 152 ~Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 152 VIFVTVGVDE---------VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred EEEECCchHH---------hHHHHHHhcCCCCEEEEE
Confidence 9999866543 234577899999998775
No 135
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.48 E-value=1e-06 Score=86.93 Aligned_cols=123 Identities=19% Similarity=0.312 Sum_probs=89.6
Q ss_pred cccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh---cCCccEEEecc-CcCCCCCCcccEEEEccccccc
Q 047630 236 TIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS---RGVVPLYISIS-QRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~---rg~i~~~~~d~-~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
.+...+|+|.|.|+.+..+....+.+-++..|+ +....++. .| ++.+.+|. ++.| .+ |+|++.+++|||
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdl--p~v~~~a~~~~~g-V~~v~gdmfq~~P--~~--daI~mkWiLhdw 249 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDL--PFVLAAAPYLAPG-VEHVAGDMFQDTP--KG--DAIWMKWILHDW 249 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCH--HHHHhhhhhhcCC-cceecccccccCC--Cc--CeEEEEeecccC
Confidence 467789999999999999999777787855554 44433322 33 56666664 3444 33 699999999998
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccc---------------------------hHHHHHHHHHHcCCeEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---------------------------LEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---------------------------l~~~l~~ll~~aGf~~i~w 364 (392)
.|++ ..++|++++..|+|||.+++.+...+.+. ..++++..+.++||.....
T Consensus 250 tDed-cvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~ 328 (342)
T KOG3178|consen 250 TDED-CVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMV 328 (342)
T ss_pred ChHH-HHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEE
Confidence 6644 56899999999999999988876332211 1667888888888888776
Q ss_pred EE
Q 047630 365 VV 366 (392)
Q Consensus 365 ~~ 366 (392)
..
T Consensus 329 ~~ 330 (342)
T KOG3178|consen 329 AL 330 (342)
T ss_pred Ee
Confidence 63
No 136
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.46 E-value=4.7e-07 Score=83.60 Aligned_cols=119 Identities=19% Similarity=0.303 Sum_probs=75.2
Q ss_pred EEEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHH----HHHhcC--CccEEEeccCc-C--CCCCCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNN----FIASRG--VVPLYISISQR-L--PFFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~-L--pf~d~sFDlV~s~~~ 307 (392)
++||||||.|.+...+|+..+ .++| +|+...... .+.+.+ .+.++.+|+.. + -++++++|.|+..+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iG--iE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIG--IEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEE--EES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEE--EecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 569999999999999999654 5566 555444443 223334 36788888766 2 245789999998764
Q ss_pred ccccCCch------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHc--CCeEEE
Q 047630 308 LSNWIPTT------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESV--GFNKLK 363 (392)
Q Consensus 308 l~~~~~~~------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~a--Gf~~i~ 363 (392)
= .|.... --..++..+.++|+|||.|.+.. +..+..+...+.+++. +|+.+.
T Consensus 98 D-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T---D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 98 D-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT---DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE---S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred C-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe---CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 3 332211 12468999999999999996653 3445555566677774 677653
No 137
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.44 E-value=5.2e-06 Score=85.85 Aligned_cols=135 Identities=14% Similarity=0.094 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcC--CccEEEeccCc---
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQR--- 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~--- 291 (392)
.+.+++.+++......-..|||+|||+|.++..+++.+..++++|++ ..+.+.+. ..+ .+.++.+|+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s--~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGV--EAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 45566666553321111234999999999999999988888885544 44443222 223 36788888654
Q ss_pred -CCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 292 -LPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 292 -Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
+++.+++||+|++.-.... +..++..+.+ ++|+++++++--. ..+...+. .+.+.||+..+.....
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g------~~~~~~~l~~-~~~~~ivyvSCnp---~tlaRDl~-~L~~~gY~l~~i~~~D 426 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAG------AAEVMQALAK-LGPKRIVYVSCNP---ATLARDAG-VLVEAGYRLKRAGMLD 426 (443)
T ss_pred hhhhhcCCCCEEEECcCCcC------hHHHHHHHHh-cCCCeEEEEEeCh---HHhhccHH-HHhhCCcEEEEEEEec
Confidence 3455678999998654322 2345555555 6999999888522 22223244 3456799988777654
No 138
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.43 E-value=4.5e-07 Score=84.61 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=62.1
Q ss_pred HHHhhCCCCcccEEEEEcCCcchHHHHHHHc-CC--EEEEEecCCCchhHHHHHh----cC--CccEEEeccCcCCCCCC
Q 047630 227 EVLATKKPGTIRIGLDIGGGVATFAVRMMER-NI--TIVTTSMNLNGPFNNFIAS----RG--VVPLYISISQRLPFFDN 297 (392)
Q Consensus 227 ~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~-g~--~vvg~~iD~~a~~~~~aa~----rg--~i~~~~~d~~~Lpf~d~ 297 (392)
+.+.+.++.++ ||||||+|++++.|+.. +. .|++++ .+....+.+.+ .+ .+.++++|...---...
T Consensus 66 ~~L~l~pg~~V---LeIGtGsGY~aAlla~lvg~~g~Vv~vE--~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a 140 (209)
T PF01135_consen 66 EALDLKPGDRV---LEIGTGSGYQAALLAHLVGPVGRVVSVE--RDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA 140 (209)
T ss_dssp HHTTC-TT-EE---EEES-TTSHHHHHHHHHHSTTEEEEEEE--SBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred HHHhcCCCCEE---EEecCCCcHHHHHHHHhcCccceEEEEC--ccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence 34457777777 99999999999999983 33 467744 43333332222 23 36788888654322456
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.||.|++..+.... -..+.+.||+||++++-.
T Consensus 141 pfD~I~v~~a~~~i---------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 141 PFDRIIVTAAVPEI---------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp SEEEEEESSBBSS-----------HHHHHTEEEEEEEEEEE
T ss_pred CcCEEEEeeccchH---------HHHHHHhcCCCcEEEEEE
Confidence 89999999877442 255778899999998763
No 139
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.4e-06 Score=80.81 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cCC--ccEEEeccCc-CC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RGV--VPLYISISQR-LP 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg~--i~~~~~d~~~-Lp 293 (392)
....+-+++.+.++.+| ||||||+|+.++-|++..-.|++++.+ ....+.+.+ .|. +.+.++|... +|
T Consensus 60 ~vA~m~~~L~~~~g~~V---LEIGtGsGY~aAvla~l~~~V~siEr~--~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLELKPGDRV---LEIGTGSGYQAAVLARLVGRVVSIERI--EELAEQARRNLETLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCCCCCCeE---EEECCCchHHHHHHHHHhCeEEEEEEc--HHHHHHHHHHHHHcCCCceEEEECCcccCCC
Confidence 33444556667787777 999999999999999976688885533 333333322 232 6778888543 44
Q ss_pred CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 294 FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 294 f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
....||.|+...+.... + ..+.+-||+||++++-.-
T Consensus 135 -~~aPyD~I~Vtaaa~~v-P--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 -EEAPYDRIIVTAAAPEV-P--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred -CCCCcCEEEEeeccCCC-C--------HHHHHhcccCCEEEEEEc
Confidence 45789999998776542 1 445678999999988754
No 140
>PRK01581 speE spermidine synthase; Validated
Probab=98.38 E-value=3.5e-06 Score=84.41 Aligned_cols=129 Identities=14% Similarity=0.086 Sum_probs=82.1
Q ss_pred cccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh--------c-----CCccEEEeccCc-CCCCCCcc
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS--------R-----GVVPLYISISQR-LPFFDNTL 299 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~--------r-----g~i~~~~~d~~~-Lpf~d~sF 299 (392)
+.+.||+||||+|..+..+.+.. ..++++++| +...+.+.+ + ..+.++++|+.. +.-.+++|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEID--peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLD--GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC--HHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 34556999999999998888854 467775544 444444332 1 136677787665 34446789
Q ss_pred cEEEEcccccccC---CchhHHHHHHHHHHcccCCcEEEEEeeccc-ccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 300 DIVHSMHVLSNWI---PTTLLHFLMFDIYRVLRPGGLFWLDHFFCV-GAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 300 DlV~s~~~l~~~~---~~~~l~~~L~el~RvLKPGG~lii~~~~~~-~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
|+|++... .... ..-.-.++++.+++.|+|||++++..-... .......+.+.++++|+........
T Consensus 228 DVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~ 298 (374)
T PRK01581 228 DVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI 298 (374)
T ss_pred cEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe
Confidence 99998742 1111 111224689999999999999977642111 1112233677889999988766644
No 141
>PHA03412 putative methyltransferase; Provisional
Probab=98.37 E-value=1.8e-06 Score=81.70 Aligned_cols=117 Identities=13% Similarity=0.157 Sum_probs=73.3
Q ss_pred EEEEcCCcchHHHHHHHc-----CCEEEEEecCCCchhHHHHHhcC-CccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 240 GLDIGGGVATFAVRMMER-----NITIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~-----g~~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
|||+|||+|.++..++++ ...++++++|. .....+.++- .+.++.+|+...++ +++||+|+++-.+.....
T Consensus 53 VLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~--~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 53 VVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH--TYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKT 129 (241)
T ss_pred EEEccChHHHHHHHHHHhcccCCCcEEEEEECCH--HHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccc
Confidence 499999999999988763 45788855443 3333333321 36788888877664 568999999976653221
Q ss_pred c---------hhHHHHHHHHHHcccCCcEEEEEe---e-------ccccc-chHHHHHHHHHHcCC
Q 047630 314 T---------TLLHFLMFDIYRVLRPGGLFWLDH---F-------FCVGA-QLEDVYVPLIESVGF 359 (392)
Q Consensus 314 ~---------~~l~~~L~el~RvLKPGG~lii~~---~-------~~~~~-~l~~~l~~ll~~aGf 359 (392)
. .....++..+.|++++|+.++=.. | +...+ .--..+.+..++.|.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGL 195 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeeccCcccHHHHHHHHhcCe
Confidence 1 124458888899777777642111 1 11111 113447777888774
No 142
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.37 E-value=4.7e-06 Score=82.59 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=100.4
Q ss_pred cccccceeccCCCC-cHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C
Q 047630 206 GVEKIRWTQKKGNG-GLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G 280 (392)
Q Consensus 206 ~~e~~~w~~~~~~~-~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g 280 (392)
..+++.|+.++.-. .+...+-.+....+|+.+ ||==||||.++....-.|..++|+|+|. .+..-+..+ +
T Consensus 169 ~~~kRPf~~p~s~~P~lAR~mVNLa~v~~G~~v---lDPFcGTGgiLiEagl~G~~viG~Did~--~mv~gak~Nl~~y~ 243 (347)
T COG1041 169 DPEKRPFFRPGSMDPRLARAMVNLARVKRGELV---LDPFCGTGGILIEAGLMGARVIGSDIDE--RMVRGAKINLEYYG 243 (347)
T ss_pred CcccCCccCcCCcCHHHHHHHHHHhccccCCEe---ecCcCCccHHHHhhhhcCceEeecchHH--HHHhhhhhhhhhhC
Confidence 34556677665421 134444455556666667 9999999999999998999999965443 333322211 2
Q ss_pred C--ccEEEe-ccCcCCCCCCcccEEEEccccccc--CC----chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHH
Q 047630 281 V--VPLYIS-ISQRLPFFDNTLDIVHSMHVLSNW--IP----TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYV 351 (392)
Q Consensus 281 ~--i~~~~~-d~~~Lpf~d~sFDlV~s~~~l~~~--~~----~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~ 351 (392)
. ..+... |+..+|+++++||.|++-...--- .. .+-..++|+.+.++||+||++++..... ..
T Consensus 244 i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~--------~~ 315 (347)
T COG1041 244 IEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD--------PR 315 (347)
T ss_pred cCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc--------ch
Confidence 1 233444 899999999999999986433211 11 2346788999999999999998876532 33
Q ss_pred HHHHHcCCeEEEEEEee
Q 047630 352 PLIESVGFNKLKWVVGR 368 (392)
Q Consensus 352 ~ll~~aGf~~i~w~~~~ 368 (392)
..+++.||+++.-....
T Consensus 316 ~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 316 HELEELGFKVLGRFTMR 332 (347)
T ss_pred hhHhhcCceEEEEEEEe
Confidence 45788899988655443
No 143
>PRK04457 spermidine synthase; Provisional
Probab=98.35 E-value=1.8e-06 Score=83.35 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=72.6
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc-------CCccEEEeccCcC-CCCCCcccEEEEccc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR-------GVVPLYISISQRL-PFFDNTLDIVHSMHV 307 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r-------g~i~~~~~d~~~L-pf~d~sFDlV~s~~~ 307 (392)
+.|||||||+|.++..+++. +..++++++| ....+.+.+. ..+.++++|...+ .-..++||+|++..
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid--p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN--PQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 44599999999999999875 4567775544 3444433322 2367788886442 22346899999752
Q ss_pred ccccCCc--hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCe
Q 047630 308 LSNWIPT--TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFN 360 (392)
Q Consensus 308 l~~~~~~--~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~ 360 (392)
++.-..+ -....+++++.++|+|||++++..+.. ...... +.+.+++. |.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~-~~~~~~-~l~~l~~~-F~ 196 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR-DKRYDR-YLERLESS-FE 196 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC-chhHHH-HHHHHHHh-cC
Confidence 2211111 122579999999999999999864433 222323 44455554 65
No 144
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.35 E-value=7.6e-06 Score=80.93 Aligned_cols=116 Identities=12% Similarity=0.038 Sum_probs=73.4
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcCCC-CCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRLPF-FDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~Lpf-~d~sFDlV~s~~~l~~~ 311 (392)
.|||+|||+|.++..+++.+..|+|+|++. ...+. +...+ .+.++++|+..+.. .++.||+|++.-.-
T Consensus 176 ~VLDl~cG~G~~sl~la~~~~~V~gvD~s~--~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr--- 250 (315)
T PRK03522 176 SMWDLFCGVGGFGLHCATPGMQLTGIEISA--EAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR--- 250 (315)
T ss_pred EEEEccCCCCHHHHHHHhcCCEEEEEeCCH--HHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC---
Confidence 459999999999999999998999955543 43332 22334 26788998876542 34579999987432
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
..+...+.++...++|+++++++.-.. .+...+..+ .||+..+.....
T Consensus 251 ---~G~~~~~~~~l~~~~~~~ivyvsc~p~---t~~rd~~~l---~~y~~~~~~~~D 298 (315)
T PRK03522 251 ---RGIGKELCDYLSQMAPRFILYSSCNAQ---TMAKDLAHL---PGYRIERVQLFD 298 (315)
T ss_pred ---CCccHHHHHHHHHcCCCeEEEEECCcc---cchhHHhhc---cCcEEEEEEEec
Confidence 221122333444478888888775332 222334433 588877766553
No 145
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.33 E-value=2.1e-06 Score=79.32 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=59.6
Q ss_pred CcccEEEEEcCCcch----HHHHHHH-----c--CCEEEEEecCCCchhHHHHHhcC-----------------------
Q 047630 235 GTIRIGLDIGGGVAT----FAVRMME-----R--NITIVTTSMNLNGPFNNFIASRG----------------------- 280 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~----~a~~La~-----~--g~~vvg~~iD~~a~~~~~aa~rg----------------------- 280 (392)
..+ .|+.+||++|. +|..+.+ . .+.+.|+|+|. ...+. |++|
T Consensus 31 ~~l-rIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~--~~L~~-Ar~G~Y~~~~~~~~~~~~~~ryf~~~~ 106 (196)
T PF01739_consen 31 RPL-RIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP--SALEK-ARAGIYPERSLRGLPPAYLRRYFTERD 106 (196)
T ss_dssp S-E-EEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H--HHHHH-HHHTEEEGGGGTTS-HHHHHHHEEEE-
T ss_pred CCe-EEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH--HHHHH-HHhCCCCHHHHhhhHHHHHHHhccccC
Confidence 444 44999999996 4445555 1 25788877664 32221 1111
Q ss_pred ------------CccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 281 ------------VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 281 ------------~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.+.|...+..+.+...+.||+|+|.+++.++ +++....+++.+++.|+|||+|++.+
T Consensus 107 ~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 107 GGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1566666665534456789999999999986 55666899999999999999999885
No 146
>PRK03612 spermidine synthase; Provisional
Probab=98.31 E-value=4.2e-06 Score=88.31 Aligned_cols=122 Identities=12% Similarity=0.076 Sum_probs=79.3
Q ss_pred ccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc-------------CCccEEEeccCcC-CCCCCccc
Q 047630 237 IRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR-------------GVVPLYISISQRL-PFFDNTLD 300 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r-------------g~i~~~~~d~~~L-pf~d~sFD 300 (392)
.++|||||||+|..+..+.++. .+++++|+| ....+.+.++ ..++++.+|..+. ...+++||
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid--~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLD--PAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECC--HHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3456999999999999988864 478885544 4555444431 1356777886653 33457899
Q ss_pred EEEEcccccccCCc---hhHHHHHHHHHHcccCCcEEEEEeecc-cccchHHHHHHHHHHcCCeE
Q 047630 301 IVHSMHVLSNWIPT---TLLHFLMFDIYRVLRPGGLFWLDHFFC-VGAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 301 lV~s~~~l~~~~~~---~~l~~~L~el~RvLKPGG~lii~~~~~-~~~~l~~~l~~ll~~aGf~~ 361 (392)
+|++...-.. .+. -.-+++++.+.+.|||||.+++..... ...+....+.+.+++.||..
T Consensus 376 vIi~D~~~~~-~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDLPDPS-NPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeCCCCC-CcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 9999754321 111 112458899999999999998864211 11222345788899999933
No 147
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.30 E-value=3.5e-06 Score=91.92 Aligned_cols=126 Identities=15% Similarity=0.068 Sum_probs=81.1
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC----CccEEEeccCcC-CCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG----VVPLYISISQRL-PFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg----~i~~~~~d~~~L-pf~d~sFD 300 (392)
+.++.+| ||+|||+|.++..++..|. .|+++|++ ....+ ++..++ .+.++.+|+.+. .-..++||
T Consensus 536 ~~~g~rV---LDlf~gtG~~sl~aa~~Ga~~V~~vD~s--~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 536 MAKGKDF---LNLFAYTGTASVHAALGGAKSTTTVDMS--NTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred hcCCCeE---EEcCCCCCHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcC
Confidence 3444555 9999999999999999876 58885544 33333 233333 256788886542 11256899
Q ss_pred EEEEcccccc--------cCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 301 IVHSMHVLSN--------WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 301 lV~s~~~l~~--------~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+|++.-.... +........++..+.++|+|||.+++......... -.+.+.++|++.....
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~----~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM----DEEGLAKLGLKAEEIT 679 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh----hHHHHHhCCCeEEEEe
Confidence 9999743211 11123456788899999999999988754332221 2567788897765444
No 148
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.29 E-value=4.6e-06 Score=79.11 Aligned_cols=108 Identities=11% Similarity=0.100 Sum_probs=71.3
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcC---CccEEEeccCc
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRG---VVPLYISISQR 291 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~ 291 (392)
..++..+..+.+..++ ||+|||+|+-+..++.. +..++++|+| ....+ .+++.| .++++.+++.+
T Consensus 57 g~~L~~l~~~~~~~~v---LEiGt~~G~s~l~la~~~~~~g~v~tiD~d--~~~~~~A~~n~~~~gl~~~i~~~~gda~~ 131 (234)
T PLN02781 57 GLFLSMLVKIMNAKNT---LEIGVFTGYSLLTTALALPEDGRITAIDID--KEAYEVGLEFIKKAGVDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHHHhCCCEE---EEecCcccHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEccHHH
Confidence 3345555556555555 99999999988877762 3477775544 34333 233334 36788887654
Q ss_pred C-C-----CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 292 L-P-----FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 292 L-p-----f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
. + .++++||+|+.... ......++.++.+.|||||++++++..
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 3 1 12468999987432 233456889999999999999988743
No 149
>PRK00811 spermidine synthase; Provisional
Probab=98.29 E-value=2.7e-06 Score=82.90 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=66.1
Q ss_pred ccEEEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHh-----------cCCccEEEeccCcC-CCCCCcccEE
Q 047630 237 IRIGLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIAS-----------RGVVPLYISISQRL-PFFDNTLDIV 302 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~-----------rg~i~~~~~d~~~L-pf~d~sFDlV 302 (392)
.+.|||||||+|..+..+.+. + ..++++++|. ...+.+.+ ...+.++.+|+..+ ...+++||+|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 445699999999999999885 4 3688855554 43332221 12357788886543 3356789999
Q ss_pred EEcccccccCCchh--HHHHHHHHHHcccCCcEEEEE
Q 047630 303 HSMHVLSNWIPTTL--LHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 303 ~s~~~l~~~~~~~~--l~~~L~el~RvLKPGG~lii~ 337 (392)
++...- ++.+... .+++++.+.+.|+|||++++.
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 986432 2222222 257889999999999999875
No 150
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.28 E-value=8.5e-06 Score=76.70 Aligned_cols=96 Identities=18% Similarity=0.302 Sum_probs=61.4
Q ss_pred EEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHHHHHhcCC--------cc--------------------------
Q 047630 240 GLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNNFIASRGV--------VP-------------------------- 283 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~~aa~rg~--------i~-------------------------- 283 (392)
+|||||-.|.++..+++. + -.++|+|||. ...+.|.+.-. +.
T Consensus 62 ~LDIGCNsG~lt~~iak~F~~r~iLGvDID~--~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~ 139 (288)
T KOG2899|consen 62 ALDIGCNSGFLTLSIAKDFGPRRILGVDIDP--VLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTT 139 (288)
T ss_pred eEeccCCcchhHHHHHHhhccceeeEeeccH--HHHHHHHHhccccccccccccCCCccccccccccccccccccccccc
Confidence 499999999999999983 3 3477755553 33333332210 00
Q ss_pred ------------EEEeccCcCCCCCCcccEEEEcccc----cccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 284 ------------LYISISQRLPFFDNTLDIVHSMHVL----SNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 284 ------------~~~~d~~~Lpf~d~sFDlV~s~~~l----~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
++.....-+.+....||+|+|..+- -+| .++.+..+++.+.+.|.|||+|++..
T Consensus 140 ~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNw-gD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 140 DFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNW-GDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccc-ccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 0000111122345689999986432 233 34677899999999999999999985
No 151
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.27 E-value=1.6e-05 Score=76.92 Aligned_cols=129 Identities=17% Similarity=0.219 Sum_probs=90.1
Q ss_pred CCcccEEEEEcCCcchHHHHHHHcC----CEEEEEecCCCchhHH----HHHhcCC---ccEEEeccCcC---CCCCCcc
Q 047630 234 PGTIRIGLDIGGGVATFAVRMMERN----ITIVTTSMNLNGPFNN----FIASRGV---VPLYISISQRL---PFFDNTL 299 (392)
Q Consensus 234 ~~~ir~VLDIGCGtG~~a~~La~~g----~~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d~~~L---pf~d~sF 299 (392)
+..| .||||.||.|++.....+.. ..+... |.+....+ .++++|+ +.|..+|+.+. .--+...
T Consensus 134 g~pv-rIlDIAaG~GRYvlDal~~~~~~~~~i~Lr--Dys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 134 GRPV-RILDIAAGHGRYVLDALEKHPERPDSILLR--DYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred CCce-EEEEeccCCcHHHHHHHHhCCCCCceEEEE--eCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCC
Confidence 3444 44999999999776665532 345553 44223322 5667764 58888886543 2224457
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe--eccccc-------------------chHHHHHHHHHHcC
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH--FFCVGA-------------------QLEDVYVPLIESVG 358 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~--~~~~~~-------------------~l~~~l~~ll~~aG 358 (392)
++++.+..+..+.+.+.+...+..+.+++.|||+++.+. +...-+ .-..++.++++++|
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aG 290 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAG 290 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcC
Confidence 999999999888887878889999999999999998886 221111 11677999999999
Q ss_pred CeEEEEE
Q 047630 359 FNKLKWV 365 (392)
Q Consensus 359 f~~i~w~ 365 (392)
|+++...
T Consensus 291 F~K~~q~ 297 (311)
T PF12147_consen 291 FEKIDQR 297 (311)
T ss_pred Cchhhhe
Confidence 9987655
No 152
>PLN02672 methionine S-methyltransferase
Probab=98.27 E-value=5.6e-06 Score=93.10 Aligned_cols=140 Identities=14% Similarity=0.040 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhCCCC--cccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHH--HHHhcC--------------
Q 047630 221 LDFSIDEVLATKKPG--TIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNN--FIASRG-------------- 280 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~--~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~--~aa~rg-------------- 280 (392)
.+.+++. +...+.. +-..|||+|||+|.++..+++.. ..++++|++..+-..+ ++..++
T Consensus 102 TE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~ 180 (1082)
T PLN02672 102 SFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGK 180 (1082)
T ss_pred HHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccc
Confidence 5666666 3332221 11245999999999999999854 5788866554222111 232211
Q ss_pred ----CccEEEeccCcCCCC-CCcccEEEEcccccccC--------------------------------Cch---hHHHH
Q 047630 281 ----VVPLYISISQRLPFF-DNTLDIVHSMHVLSNWI--------------------------------PTT---LLHFL 320 (392)
Q Consensus 281 ----~i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~~--------------------------------~~~---~l~~~ 320 (392)
.+.++.+|.....-. ...||+|+++-....-. +.+ -.+.+
T Consensus 181 ~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i 260 (1082)
T PLN02672 181 TLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 260 (1082)
T ss_pred cccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHH
Confidence 267788886543211 23699999985432100 011 12568
Q ss_pred HHHHHHcccCCcEEEEEeecccccchHHHHH-HHHHHcCCeEE-EEE
Q 047630 321 MFDIYRVLRPGGLFWLDHFFCVGAQLEDVYV-PLIESVGFNKL-KWV 365 (392)
Q Consensus 321 L~el~RvLKPGG~lii~~~~~~~~~l~~~l~-~ll~~aGf~~i-~w~ 365 (392)
+.++.++|||||.+++..-..+.+ .+. +++++.||+.+ .|.
T Consensus 261 ~~~a~~~L~pgG~l~lEiG~~q~~----~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 261 VEEGISVIKPMGIMIFNMGGRPGQ----AVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred HHHHHHhccCCCEEEEEECccHHH----HHHHHHHHHCCCCeeEEee
Confidence 888999999999999886544333 355 58888999874 454
No 153
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.25 E-value=1.5e-06 Score=85.71 Aligned_cols=98 Identities=15% Similarity=0.280 Sum_probs=68.7
Q ss_pred cEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH-HHHhcC---CccEEEeccCcCCCCCCcccEEEEcccccccC
Q 047630 238 RIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN-FIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~-~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~ 312 (392)
++|||+|||||.++..-++.|+ .|++++.+--+.... .+..++ .++++.+.++++.+|.+..|+|++-+.-....
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll 141 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLL 141 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHH
Confidence 3459999999999999999875 577755332122222 233333 37888888888777788999999976554433
Q ss_pred CchhHHHHHHHHHHcccCCcEEE
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~li 335 (392)
-+..+..+|..=.+.|+|||.++
T Consensus 142 ~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 142 YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HhhhhhhhhhhhhhccCCCceEc
Confidence 34455567777789999999984
No 154
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.24 E-value=1.5e-06 Score=83.49 Aligned_cols=95 Identities=23% Similarity=0.234 Sum_probs=72.7
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCc-cEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVV-PLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i-~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
++|+|||.|.+...- ...-+++ .|+ .......+++... ....+|+..+|+.+.+||.+++..++||+......+
T Consensus 49 ~~d~gCGngky~~~~--p~~~~ig--~D~-c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~ 123 (293)
T KOG1331|consen 49 GLDVGCGNGKYLGVN--PLCLIIG--CDL-CTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRE 123 (293)
T ss_pred eeecccCCcccCcCC--Ccceeee--cch-hhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHH
Confidence 599999999865421 2223444 555 3333344444333 578899999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCcEEEEEee
Q 047630 319 FLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~~ 339 (392)
.+++|+.|+|||||...+..+
T Consensus 124 ~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 124 RALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred HHHHHHHHHhcCCCceEEEEe
Confidence 999999999999998766554
No 155
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=8.5e-06 Score=77.36 Aligned_cols=123 Identities=18% Similarity=0.217 Sum_probs=83.0
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH-cCC--EEEEEecCCCchhHHHHHhc----C---CccEEEeccCcC
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME-RNI--TIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRL 292 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~-~g~--~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~L 292 (392)
.+|-..+++.++.+| ||.|.|+|.++++|+. .|. ++++ .++..+..+.|.++ + .+.+..+|+.+.
T Consensus 84 ~~I~~~~gi~pg~rV---lEAGtGSG~lt~~La~~vg~~G~v~t--yE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 84 GYIVARLGISPGSRV---LEAGTGSGALTAYLARAVGPEGHVTT--YEIREDFAKTARENLSEFGLGDRVTLKLGDVREG 158 (256)
T ss_pred HHHHHHcCCCCCCEE---EEcccCchHHHHHHHHhhCCCceEEE--EEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence 355556678888888 9999999999999996 444 4555 55655666544333 2 256667777776
Q ss_pred CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEE
Q 047630 293 PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
-+.+ .||+|+.-. ...| .++..++++|||||.+++... .-++..+ ..+.+++.||..+
T Consensus 159 ~~~~-~vDav~LDm-p~PW-------~~le~~~~~Lkpgg~~~~y~P--~veQv~k-t~~~l~~~g~~~i 216 (256)
T COG2519 159 IDEE-DVDAVFLDL-PDPW-------NVLEHVSDALKPGGVVVVYSP--TVEQVEK-TVEALRERGFVDI 216 (256)
T ss_pred cccc-ccCEEEEcC-CChH-------HHHHHHHHHhCCCcEEEEEcC--CHHHHHH-HHHHHHhcCccch
Confidence 5555 899998532 2222 589999999999999866532 2334444 4445666688665
No 156
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.21 E-value=4e-06 Score=81.88 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=44.4
Q ss_pred ccEEEeccCcCCCC-CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 282 VPLYISISQRLPFF-DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 282 i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|.|...+....+++ .+.||+|+|.+++.++ +++....+++.+++.|+|||+|++.+
T Consensus 206 V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 206 VDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 45555565554443 5789999999999986 55667899999999999999998875
No 157
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.20 E-value=2.8e-05 Score=75.13 Aligned_cols=141 Identities=18% Similarity=0.157 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhCC----CCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhH---HHHHhc----CC--------
Q 047630 221 LDFSIDEVLATKK----PGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFN---NFIASR----GV-------- 281 (392)
Q Consensus 221 ~~~lI~~ll~l~~----~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~---~~aa~r----g~-------- 281 (392)
.+.+++.+....+ ...-..||--|||.|+++..++.+|..+.|.+.+. -+. .++... +.
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~--~Mll~s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSY--FMLLASNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchH--HHHHHHHHHHcccCCCCcEEEeccee
Confidence 4556666655543 11123459999999999999999999999955443 222 122211 10
Q ss_pred -------------------------------ccEEEeccCcCCCCC---CcccEEEEcccccccCCchhHHHHHHHHHHc
Q 047630 282 -------------------------------VPLYISISQRLPFFD---NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRV 327 (392)
Q Consensus 282 -------------------------------i~~~~~d~~~Lpf~d---~sFDlV~s~~~l~~~~~~~~l~~~L~el~Rv 327 (392)
+....+|...+...+ ++||+|++.+.+.- ..++-+.+..|.++
T Consensus 115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~l 191 (270)
T PF07942_consen 115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEHL 191 (270)
T ss_pred cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHHH
Confidence 112223333332233 79999999876643 36677899999999
Q ss_pred ccCCcEEEEEe-----eccc--c----cch-HHHHHHHHHHcCCeEEEEEE
Q 047630 328 LRPGGLFWLDH-----FFCV--G----AQL-EDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 328 LKPGG~lii~~-----~~~~--~----~~l-~~~l~~ll~~aGf~~i~w~~ 366 (392)
|||||+++=.. +... . -++ .+++..++++.||+.++.+.
T Consensus 192 LkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 192 LKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred hccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 99999553222 2211 0 111 67799999999999998886
No 158
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.18 E-value=9e-06 Score=82.93 Aligned_cols=122 Identities=10% Similarity=0.023 Sum_probs=75.8
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcCC----ccEEEeccCcCC----CCCC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRGV----VPLYISISQRLP----FFDN 297 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg~----i~~~~~d~~~Lp----f~d~ 297 (392)
+.++.++ ||+|||+|.++...+..+. .|+++|+| ....+ .+..++. +.++.+|+..+- ...+
T Consensus 218 ~~~g~rV---LDlfsgtG~~~l~aa~~ga~~V~~VD~s--~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 218 YVENKRV---LNCFSYTGGFAVSALMGGCSQVVSVDTS--QEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred hcCCCeE---EEeccCCCHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCC
Confidence 3344455 9999999999987766654 78885544 33333 3333342 467888866531 1356
Q ss_pred cccEEEEcccccccCCc-------hhHHHHHHHHHHcccCCcEEEEEeec--ccccchHHHHHHHHHHcC
Q 047630 298 TLDIVHSMHVLSNWIPT-------TLLHFLMFDIYRVLRPGGLFWLDHFF--CVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~-------~~l~~~L~el~RvLKPGG~lii~~~~--~~~~~l~~~l~~ll~~aG 358 (392)
+||+|++.-.... ... .....++..+.++|+|||.|+..... -..+...+.+.+...++|
T Consensus 293 ~fDlVilDPP~f~-~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~ 361 (396)
T PRK15128 293 KFDVIVMDPPKFV-ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAG 361 (396)
T ss_pred CCCEEEECCCCCC-CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcC
Confidence 8999998754321 111 13445666788999999999876532 223444555556666665
No 159
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.17 E-value=1.4e-05 Score=77.16 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=67.0
Q ss_pred CcccEEEEEcCCcch----HHHHHHHc-------CCEEEEEecCCCchhHH-------HHHhcCC---------------
Q 047630 235 GTIRIGLDIGGGVAT----FAVRMMER-------NITIVTTSMNLNGPFNN-------FIASRGV--------------- 281 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~----~a~~La~~-------g~~vvg~~iD~~a~~~~-------~aa~rg~--------------- 281 (392)
+.+ +|.-+||+||. +|..+.+. .+.++|+|+|..+-..+ ....+++
T Consensus 96 ~~i-rIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPI-RIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred Cce-EEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 344 44999999996 45555552 36788877765221111 0010110
Q ss_pred -----------ccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 282 -----------VPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 282 -----------i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|.|...+...-++..+.||+|+|-+++..+ +.+...+++..++..|+|||+|++.+
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 334444433333256679999999999986 55666899999999999999999885
No 160
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.17 E-value=4.4e-05 Score=71.08 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=83.3
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCC---CCCcccEEEEcccccccCCch
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPF---FDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf---~d~sFDlV~s~~~l~~~~~~~ 315 (392)
.+|||||=+......-. .-.+|+.+|++... -.+...|+-..|. .++.||+|.++.+|..+.++.
T Consensus 54 rlLEVGals~~N~~s~~-~~fdvt~IDLns~~-----------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 54 RLLEVGALSTDNACSTS-GWFDVTRIDLNSQH-----------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred eEEeecccCCCCccccc-CceeeEEeecCCCC-----------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 34999997655443321 23457775544311 2455667666665 467999999999999888888
Q ss_pred hHHHHHHHHHHcccCCcE-----EEEEee-ccccc---chHHHHHHHHHHcCCeEEEEEEee
Q 047630 316 LLHFLMFDIYRVLRPGGL-----FWLDHF-FCVGA---QLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~-----lii~~~-~~~~~---~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
..-++++.+++.|+|+|. |++.-. .|... -..+.|.++++..||..++.+...
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 888999999999999999 766643 22211 115669999999999999887443
No 161
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.10 E-value=9.4e-06 Score=76.68 Aligned_cols=100 Identities=22% Similarity=0.248 Sum_probs=68.8
Q ss_pred cEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCcC---CCCCCcccEEEEcccc
Q 047630 238 RIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQRL---PFFDNTLDIVHSMHVL 308 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~L---pf~d~sFDlV~s~~~l 308 (392)
.++||||||.|.+...+|+.+++.-.++|++..+... .+.+.++ +.+++.|+..+ -+++++.|-|...+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 3569999999999999999887665555666444443 2333342 56677775543 2356699999987643
Q ss_pred cccCCch------hHHHHHHHHHHcccCCcEEEEEe
Q 047630 309 SNWIPTT------LLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 309 ~~~~~~~------~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.|.... --..+++.+.++|||||.|.+.+
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 333211 13468999999999999996664
No 162
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.09 E-value=2e-05 Score=76.21 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=62.7
Q ss_pred cEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc----------CCccEEEeccCc-CCCCCCcccEEEE
Q 047630 238 RIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQR-LPFFDNTLDIVHS 304 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~-Lpf~d~sFDlV~s 304 (392)
+.||+||||+|..+..+.+.. ..++++++|. ...+.+.+. ..+.++.+|... +...+++||+|++
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~--~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE--KVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH--HHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 456999999999998888754 4677755543 333322221 124556666433 2223578999998
Q ss_pred cccccccCCchh--HHHHHHHHHHcccCCcEEEEE
Q 047630 305 MHVLSNWIPTTL--LHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 305 ~~~l~~~~~~~~--l~~~L~el~RvLKPGG~lii~ 337 (392)
.... ...+... ..++++.+.+.|+|||++++.
T Consensus 152 D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 6542 2222222 357889999999999999876
No 163
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.09 E-value=5.6e-05 Score=76.59 Aligned_cols=116 Identities=9% Similarity=-0.011 Sum_probs=74.7
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcCCC-CCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRLPF-FDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~Lpf-~d~sFDlV~s~~~l~~~ 311 (392)
+|||+|||+|.++..++.++..++++|+|. ...+ .+...+ .+.++.+|+..+.. ..+.||+|+..-.....
T Consensus 236 ~vLDL~cG~G~~~l~la~~~~~v~~vE~~~--~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAGPDTQLTGIEIES--EAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred EEEEccCCccHHHHHHhhcCCeEEEEECCH--HHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 459999999999999999888899966554 3333 222333 26788888765421 22469999987543221
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
.+.++..+. .++|+++++++.- ...+...+..+ .||+..+.....
T Consensus 314 -----~~~~l~~l~-~~~p~~ivyvsc~---p~TlaRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 314 -----GKELCDYLS-QMAPKFILYSSCN---AQTMAKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred -----cHHHHHHHH-hcCCCeEEEEEeC---HHHHHHHHHHh---cCceEEEEEEec
Confidence 123455554 4799999988852 23343445444 689877666543
No 164
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.08 E-value=3.2e-05 Score=79.62 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhC---CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH----hcC--CccEEEeccCc
Q 047630 221 LDFSIDEVLATK---KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA----SRG--VVPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~---~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa----~rg--~i~~~~~d~~~ 291 (392)
.+.+++.+.... ++.. |||+|||+|.++..+++....|+++|++ ..+.+.+. ..+ .+.++.+|+.+
T Consensus 277 ~~~l~~~~~~~l~~~~~~~---vLDl~cG~G~~sl~la~~~~~V~~vE~~--~~av~~a~~n~~~~~~~nv~~~~~d~~~ 351 (431)
T TIGR00479 277 NEKLVDRALEALELQGEEL---VVDAYCGVGTFTLPLAKQAKSVVGIEVV--PESVEKAQQNAELNGIANVEFLAGTLET 351 (431)
T ss_pred HHHHHHHHHHHhccCCCCE---EEEcCCCcCHHHHHHHHhCCEEEEEEcC--HHHHHHHHHHHHHhCCCceEEEeCCHHH
Confidence 444555554432 3334 4999999999999999988889885544 34443222 223 36788888754
Q ss_pred C----CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 292 L----PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 292 L----pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+ ++.+++||+|+..-.-... ...+++.+.+ ++|+++++++. ....+...+. .+.+.||+.......
T Consensus 352 ~l~~~~~~~~~~D~vi~dPPr~G~-----~~~~l~~l~~-l~~~~ivyvsc---~p~tlard~~-~l~~~gy~~~~~~~~ 421 (431)
T TIGR00479 352 VLPKQPWAGQIPDVLLLDPPRKGC-----AAEVLRTIIE-LKPERIVYVSC---NPATLARDLE-FLCKEGYGITWVQPV 421 (431)
T ss_pred HHHHHHhcCCCCCEEEECcCCCCC-----CHHHHHHHHh-cCCCEEEEEcC---CHHHHHHHHH-HHHHCCeeEEEEEEe
Confidence 2 3445679999975432111 1345666554 89999887763 2223333233 456678887665544
No 165
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.08 E-value=2.4e-05 Score=72.46 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=60.5
Q ss_pred EEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCc-CCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQR-LPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~-Lpf~d~sFDlV~s~~~l~~ 310 (392)
+|||+|||+|.++..++.+ ...|+++++|. ...+ .+...+ .+.++.+|+.. ++...+.||+|++.-.+..
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~--~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYAAGATLLEMDR--AVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK 133 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC
Confidence 3499999999999865554 45788855443 3333 222223 25677787654 2223457999999876432
Q ss_pred cCCchhHHHHHHHHHH--cccCCcEEEEEeec
Q 047630 311 WIPTTLLHFLMFDIYR--VLRPGGLFWLDHFF 340 (392)
Q Consensus 311 ~~~~~~l~~~L~el~R--vLKPGG~lii~~~~ 340 (392)
...+.++..+.. .|+|+|++++.+..
T Consensus 134 ----g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 134 ----GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred ----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 222345555544 47999999988654
No 166
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.07 E-value=1.1e-05 Score=77.47 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=53.1
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCcccEEEEc
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
++.++..+ ||||||+|.++..+++++..++++++|. ...+.+.++ +.+.++.+|+..++++ .||.|+++
T Consensus 26 ~~~~~~~V---LEIG~G~G~lt~~L~~~~~~v~~vEid~--~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~N 98 (258)
T PRK14896 26 EDTDGDPV---LEIGPGKGALTDELAKRAKKVYAIELDP--RLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSN 98 (258)
T ss_pred CCCCcCeE---EEEeCccCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEc
Confidence 34444444 9999999999999999988898855553 444433222 3478899999888765 48999998
Q ss_pred cccc
Q 047630 306 HVLS 309 (392)
Q Consensus 306 ~~l~ 309 (392)
..++
T Consensus 99 lPy~ 102 (258)
T PRK14896 99 LPYQ 102 (258)
T ss_pred CCcc
Confidence 7753
No 167
>PLN02366 spermidine synthase
Probab=98.06 E-value=6.2e-05 Score=74.32 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=73.6
Q ss_pred ccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh----------cCCccEEEeccCcC--CCCCCcccEE
Q 047630 237 IRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQRL--PFFDNTLDIV 302 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~L--pf~d~sFDlV 302 (392)
.+.||+||||.|..+..+++.. ..++.+++|. ...+.+.+ ...++++.+|+... ..++++||+|
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~--~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK--MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4556999999999999999853 3566655443 33332221 11367888885432 1235789999
Q ss_pred EEcccccccCCch--hHHHHHHHHHHcccCCcEEEEEee--cccccchHHHHHHHHHHcCCeEEEE
Q 047630 303 HSMHVLSNWIPTT--LLHFLMFDIYRVLRPGGLFWLDHF--FCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 303 ~s~~~l~~~~~~~--~l~~~L~el~RvLKPGG~lii~~~--~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
++...- ++.+.. .-+.+++.+.++|+|||++++..- +... +....+.+.+.+.....+.+
T Consensus 170 i~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~-~~~~~i~~tl~~~F~~~v~~ 233 (308)
T PLN02366 170 IVDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHM-DLIEDLIAICRETFKGSVNY 233 (308)
T ss_pred EEcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccch-HHHHHHHHHHHHHCCCceeE
Confidence 985432 222222 124689999999999999976421 2122 22233445555553245544
No 168
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.05 E-value=7.1e-05 Score=74.23 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=44.8
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH--HHHhc-CC---ccEEE-eccCcC----CCCCCcccEEEE
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN--FIASR-GV---VPLYI-SISQRL----PFFDNTLDIVHS 304 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~--~aa~r-g~---i~~~~-~d~~~L----pf~d~sFDlV~s 304 (392)
..|||||||+|.+...++.+ +..++++|+|..+-..+ .+... ++ +.+.+ .+...+ ...++.||+|+|
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivc 195 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLC 195 (321)
T ss_pred ceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEe
Confidence 34699999999888777764 67888877665222221 23333 22 34433 232222 124678999999
Q ss_pred cccccc
Q 047630 305 MHVLSN 310 (392)
Q Consensus 305 ~~~l~~ 310 (392)
+-.++.
T Consensus 196 NPPf~~ 201 (321)
T PRK11727 196 NPPFHA 201 (321)
T ss_pred CCCCcC
Confidence 987764
No 169
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.03 E-value=2.5e-05 Score=70.66 Aligned_cols=101 Identities=20% Similarity=0.187 Sum_probs=59.9
Q ss_pred cEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHH-HHHhcC-----CccEEEeccCc-C--C-CCCCcccEEEEc
Q 047630 238 RIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNN-FIASRG-----VVPLYISISQR-L--P-FFDNTLDIVHSM 305 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~-~aa~rg-----~i~~~~~d~~~-L--p-f~d~sFDlV~s~ 305 (392)
+.|||+|||+|..+..++.. ...|+.+|.+...+... .+..++ .+.+..-+..+ . . ...+.||+|+++
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ilas 126 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILAS 126 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEE
T ss_pred ceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEe
Confidence 34599999999999999987 67899988765112222 233222 23333323211 1 1 234689999999
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
.++.. ++..+.++.-+.+.|+++|.+++..-.+
T Consensus 127 Dv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 127 DVLYD---EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp S--S----GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cccch---HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99965 3777889999999999999977776444
No 170
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.02 E-value=2.7e-05 Score=74.41 Aligned_cols=125 Identities=17% Similarity=0.160 Sum_probs=78.0
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH-cC--CEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcCC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMME-RN--ITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRLP 293 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~-~g--~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~Lp 293 (392)
+|-..+++.+|.+| ||.|.|+|.++..|+. -+ -.|+. .|+..+..+.|.++ | .+.+.+.|+..-.
T Consensus 31 ~I~~~l~i~pG~~V---lEaGtGSG~lt~~l~r~v~p~G~v~t--~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 31 YILMRLDIRPGSRV---LEAGTGSGSLTHALARAVGPTGHVYT--YEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHTT--TT-EE---EEE--TTSHHHHHHHHHHTTTSEEEE--EESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred HHHHHcCCCCCCEE---EEecCCcHHHHHHHHHHhCCCeEEEc--cccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 44455678888888 9999999999999997 23 35666 55655666544332 3 3678888875444
Q ss_pred CC---CCcccEEEEcccccccCCchhHHHHHHHHHHcc-cCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 294 FF---DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVL-RPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 294 f~---d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvL-KPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
|. ++.+|.|+.-. ...| .++..+.++| |+||++.+-. ..-++..+ ..+.+++.||..++.
T Consensus 106 ~~~~~~~~~DavfLDl-p~Pw-------~~i~~~~~~L~~~gG~i~~fs--P~ieQv~~-~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 106 FDEELESDFDAVFLDL-PDPW-------EAIPHAKRALKKPGGRICCFS--PCIEQVQK-TVEALREHGFTDIET 169 (247)
T ss_dssp -STT-TTSEEEEEEES-SSGG-------GGHHHHHHHE-EEEEEEEEEE--SSHHHHHH-HHHHHHHTTEEEEEE
T ss_pred ccccccCcccEEEEeC-CCHH-------HHHHHHHHHHhcCCceEEEEC--CCHHHHHH-HHHHHHHCCCeeeEE
Confidence 42 36799988532 2233 4789999999 9999986553 22233333 556778889987643
No 171
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.02 E-value=3.7e-05 Score=63.00 Aligned_cols=96 Identities=28% Similarity=0.475 Sum_probs=63.2
Q ss_pred EEEEcCCcchHH--HHHHHcCCEEEEEecCCCchhHHHHHhc----CC--ccEEEeccCc--CCCCC-CcccEEEEcccc
Q 047630 240 GLDIGGGVATFA--VRMMERNITIVTTSMNLNGPFNNFIASR----GV--VPLYISISQR--LPFFD-NTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a--~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~--i~~~~~d~~~--Lpf~d-~sFDlV~s~~~l 308 (392)
++|+|||+|... ..+...+..+++ +|++.......... +. +.+..++... +++.+ ..||++ +....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG--VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE--EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 499999999965 333323346777 55533333322211 11 3567777665 78877 589999 66555
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
.++.. ....+.++.++|+|+|.+++.....
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 55433 5679999999999999998887543
No 172
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=0.00018 Score=65.72 Aligned_cols=116 Identities=11% Similarity=0.061 Sum_probs=73.3
Q ss_pred EEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHH---HHhc--CCccEEEeccCcCCCCCCcccEEEEcccccccC
Q 047630 239 IGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNF---IASR--GVVPLYISISQRLPFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~---aa~r--g~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~ 312 (392)
.|+|+|||||.++...+-.| ..|+++|+|. ...+. .+++ +.+.++++|+.++. ..||.|+.+-.+--+.
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~--~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~~~ 122 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGASRVLAVDIDP--EALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGSQR 122 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCcEEEEEecCH--HHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcccc
Confidence 35999999999999998888 4688866665 33332 2222 24789999988864 5789999997776555
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeE-EEEEEe
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNK-LKWVVG 367 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~-i~w~~~ 367 (392)
...+. .++..+.++-+ .++-.+-. ...+.++...+.+|+.. ..|+..
T Consensus 123 rhaDr-~Fl~~Ale~s~---vVYsiH~a----~~~~f~~~~~~~~G~~v~~~~~~~ 170 (198)
T COG2263 123 RHADR-PFLLKALEISD---VVYSIHKA----GSRDFVEKFAADLGGTVTHIERAR 170 (198)
T ss_pred ccCCH-HHHHHHHHhhh---eEEEeecc----ccHHHHHHHHHhcCCeEEEEEEEE
Confidence 55554 34444444431 22211111 13455778889999765 444433
No 173
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.98 E-value=2.2e-05 Score=82.57 Aligned_cols=124 Identities=14% Similarity=0.114 Sum_probs=78.8
Q ss_pred cccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcCC--ccEEEeccCcC--CCCCCcccEEEEccc
Q 047630 236 TIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRGV--VPLYISISQRL--PFFDNTLDIVHSMHV 307 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg~--i~~~~~d~~~L--pf~d~sFDlV~s~~~ 307 (392)
.-.++||||||.|.++..+|+.+++...+++++....... +.+.++ +.++..++..+ -++++++|.|+..+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 3456799999999999999997765444445554343332 223342 44555554322 257899999998765
Q ss_pred ccccCCch------hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC-CeEEE
Q 047630 308 LSNWIPTT------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG-FNKLK 363 (392)
Q Consensus 308 l~~~~~~~------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG-f~~i~ 363 (392)
= .|.... --..++..++++|||||.+.+.. +..+......+.+++.+ |+.+.
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T---D~~~y~~~~~~~~~~~~~f~~~~ 485 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS---DIENYFYEAIELIQQNGNFEIIN 485 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc---CCHHHHHHHHHHHHhCCCeEecc
Confidence 4 332211 12468999999999999997653 33444444556666655 66553
No 174
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.97 E-value=5.8e-05 Score=72.50 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=59.8
Q ss_pred cccEEEEcccccccC-CchhHHHHHHHHHHcccCCcEEEEEeeccc-----ccc-------hHHHHHHHHHHcCCeEEEE
Q 047630 298 TLDIVHSMHVLSNWI-PTTLLHFLMFDIYRVLRPGGLFWLDHFFCV-----GAQ-------LEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 298 sFDlV~s~~~l~~~~-~~~~l~~~L~el~RvLKPGG~lii~~~~~~-----~~~-------l~~~l~~ll~~aGf~~i~w 364 (392)
.||+|++.+++.... +.+....+++++.+.|||||.|++...... .+. ..+.+++.++++||.++.+
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 599999999997643 456677899999999999999988864221 111 1677999999999999998
Q ss_pred EEeeccCCCCcccceeeEEEEEc
Q 047630 365 VVGRKLDRGPELREMYLSALLEK 387 (392)
Q Consensus 365 ~~~~k~d~~~~~~e~ylsai~~K 387 (392)
+. ...-.+...+++ ++.||
T Consensus 238 ~~---~~~~~d~~~~~f-~~a~K 256 (256)
T PF01234_consen 238 EK---QSKVSDYEGMFF-LVARK 256 (256)
T ss_dssp EG----TTTB---EEEE-EEEEE
T ss_pred cc---ccCcCCCCcEEE-EEEeC
Confidence 82 111224444544 66666
No 175
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.97 E-value=1.6e-05 Score=77.04 Aligned_cols=73 Identities=11% Similarity=0.190 Sum_probs=52.7
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc---CCccEEEeccCcCCCCCCcccEEEEccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR---GVVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r---g~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
+.++..| ||||||+|.++..+++++..++++|+| ..+.+.+.++ ..+.++++|+..+++++-.+|.|+++..
T Consensus 40 ~~~~~~V---LEiG~G~G~lt~~L~~~~~~v~avE~d--~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 40 PQPGDNV---LEIGPGLGALTEPLLERAAKVTAVEID--RDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred CCCcCeE---EEeCCCccHHHHHHHHhCCcEEEEECC--HHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 3444444 999999999999999988889886655 3454444332 3478899999988875433588888765
Q ss_pred c
Q 047630 308 L 308 (392)
Q Consensus 308 l 308 (392)
+
T Consensus 115 Y 115 (272)
T PRK00274 115 Y 115 (272)
T ss_pred c
Confidence 4
No 176
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.00024 Score=64.35 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=77.7
Q ss_pred CcccEEEEEcCCcchHHHHHHHc-C--CEEEEEecCCCchhHH---HHHhcC--CccEEEeccCcCCCCCCcccEEEEcc
Q 047630 235 GTIRIGLDIGGGVATFAVRMMER-N--ITIVTTSMNLNGPFNN---FIASRG--VVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~a~~La~~-g--~~vvg~~iD~~a~~~~---~aa~rg--~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
....++||||||+|..+..|++. + ....++|+++ ...+ ..++.+ .+..++.|...- ...++.|+++.+.
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp--~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINP--EALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNP 118 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCH--HHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECC
Confidence 34667899999999999999983 3 4455555444 3332 233333 345666664331 2238899999875
Q ss_pred cccccCC------------------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEE
Q 047630 307 VLSNWIP------------------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 307 ~l~~~~~------------------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
.+..-.+ ++-..+++..+..+|.|.|.|++..... +.++++.++++.-||..-
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~---N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA---NKPKEILKILEKKGYGVR 189 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh---cCHHHHHHHHhhccccee
Confidence 5432111 1124567888889999999998886543 234456678999888653
No 177
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.96 E-value=0.00012 Score=69.20 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=65.3
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHH-HHhcCCc-cEEEeccCcC-----CCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNF-IASRGVV-PLYISISQRL-----PFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~-aa~rg~i-~~~~~d~~~L-----pf~d~sFDlV~s~~~l~~ 310 (392)
++||+|||+|.|+..+++.|+ .|++ +|++..+... ..+...+ .+...++..+ +..-..+|+++++..+
T Consensus 78 ~vlDiG~gtG~~t~~l~~~ga~~v~a--vD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~-- 153 (228)
T TIGR00478 78 IVLDVGSSTGGFTDCALQKGAKEVYG--VDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS-- 153 (228)
T ss_pred EEEEcccCCCHHHHHHHHcCCCEEEE--EeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh--
Confidence 459999999999999999875 6888 5553434443 3222221 1222333322 2111356666655433
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEe-e-cccc------------cc----hHHHHHHHHHHcCCeEEEEEEe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDH-F-FCVG------------AQ----LEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~-~-~~~~------------~~----l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
++..+.+.|+| |.+++-- . +... .. ..+.+...+.+.||+.+.+...
T Consensus 154 ---------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 218 (228)
T TIGR00478 154 ---------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFS 218 (228)
T ss_pred ---------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEEC
Confidence 57889999999 7664332 1 1100 00 0233445667778888776643
No 178
>PLN02476 O-methyltransferase
Probab=97.93 E-value=7.5e-05 Score=72.58 Aligned_cols=109 Identities=9% Similarity=0.089 Sum_probs=71.8
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcC---CccEEEeccCc
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRG---VVPLYISISQR 291 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~ 291 (392)
..++..+..+.+..++ ||||+|+|+.+..++.. +-.+++++.| ....+ ...+.| .+.++.+++.+
T Consensus 107 g~lL~~L~~~~~ak~V---LEIGT~tGySal~lA~al~~~G~V~TiE~d--~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 107 AQLLAMLVQILGAERC---IEVGVYTGYSSLAVALVLPESGCLVACERD--SNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred HHHHHHHHHhcCCCeE---EEecCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 3345555555554555 99999999999999872 3356774444 33333 223334 36778887543
Q ss_pred -CCC-----CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 292 -LPF-----FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 292 -Lpf-----~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
|+- .+++||+|+.-.. ......++..+.+.|+|||.+++++...
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 221 2468999986432 3445678899999999999999998643
No 179
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.93 E-value=3.6e-05 Score=79.67 Aligned_cols=96 Identities=17% Similarity=0.247 Sum_probs=64.4
Q ss_pred cEEEEEcCCcchHHHHHHHcC------CEEEEEecCCCchhHH-H-HHhcC---CccEEEeccCcCCCCCCcccEEEEcc
Q 047630 238 RIGLDIGGGVATFAVRMMERN------ITIVTTSMNLNGPFNN-F-IASRG---VVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g------~~vvg~~iD~~a~~~~-~-aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
.+|||||||+|-+....++.+ .+|+++.-+..+.... . +.+++ .|+++.+|++++..+. .+|+|++=.
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSEl 266 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSEL 266 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE--
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEec
Confidence 467999999999876665543 6888866544222221 1 23333 5899999999987654 899999864
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEE
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~li 335 (392)
.- .+.+.+...+.|....|.|||||+++
T Consensus 267 LG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 43 34566777788999999999999984
No 180
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.91 E-value=5.2e-05 Score=72.55 Aligned_cols=67 Identities=10% Similarity=0.175 Sum_probs=48.5
Q ss_pred cEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCCCCccc---EEEEcccc
Q 047630 238 RIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFFDNTLD---IVHSMHVL 308 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~d~sFD---lV~s~~~l 308 (392)
..|||||||+|.++..+++++..++++++| ......+.++ ..+.++.+|+..++++ .|| +|+++..+
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d--~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKRAKKVTAIEID--PRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLPY 104 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCcEEEEECC--HHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCCh
Confidence 345999999999999999988888885554 3444433322 3467888999888765 466 77776654
No 181
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.90 E-value=2.4e-05 Score=70.75 Aligned_cols=133 Identities=21% Similarity=0.252 Sum_probs=71.1
Q ss_pred cccEEEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhcCCccEEEec------cCcC----CCCCCcccEE
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASRGVVPLYISI------SQRL----PFFDNTLDIV 302 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d------~~~L----pf~d~sFDlV 302 (392)
...+|||+||++|.|+..+.+++ ..|+|+|+....+. ++ +..+.+| ...+ +-..+.||+|
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~------~~-~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL------QN-VSFIQGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------TT-EEBTTGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc------cc-eeeeecccchhhHHHhhhhhccccccCccee
Confidence 34566999999999999999987 67777554432111 11 1222222 1111 1122689999
Q ss_pred EEcccccccC--------CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCC
Q 047630 303 HSMHVLSNWI--------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGP 374 (392)
Q Consensus 303 ~s~~~l~~~~--------~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~ 374 (392)
+|-.+...-. ........+.-+.+.|||||.+++..+..... . .+...++. .|+.+.+..-.... .
T Consensus 96 ~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~--~-~~~~~l~~-~F~~v~~~Kp~~sr--~ 169 (181)
T PF01728_consen 96 LSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI--E-ELIYLLKR-CFSKVKIVKPPSSR--S 169 (181)
T ss_dssp EE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS--H-HHHHHHHH-HHHHEEEEE-TTSB--T
T ss_pred ccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH--H-HHHHHHHh-CCeEEEEEECcCCC--C
Confidence 9977432111 11222334455567899999999887664332 2 34444444 36667766443222 3
Q ss_pred cccceee
Q 047630 375 ELREMYL 381 (392)
Q Consensus 375 ~~~e~yl 381 (392)
...|.|+
T Consensus 170 ~s~E~Yl 176 (181)
T PF01728_consen 170 ESSEEYL 176 (181)
T ss_dssp TCBEEEE
T ss_pred CccEEEE
Confidence 4577887
No 182
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.89 E-value=2.1e-05 Score=79.24 Aligned_cols=101 Identities=26% Similarity=0.382 Sum_probs=74.7
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHH----HHHh---cCCccEEEeccCcCCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNN----FIAS---RGVVPLYISISQRLPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~----~aa~---rg~i~~~~~d~~~Lpf~d~sFDlV 302 (392)
..++..+ +|+|||.|....+.+. ++..++| ++.++.... .... .....+..++....||++++||.+
T Consensus 108 ~~~~~~~---~~~~~g~~~~~~~i~~f~~~~~~G--l~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKV---LDVGTGVGGPSRYIAVFKKAGVVG--LDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred Ccccccc---cccCcCcCchhHHHHHhccCCccC--CCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcE
Confidence 3444555 9999999999999888 4567777 444222221 1111 112345778899999999999999
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
.+..+..|. .....+++|++|+++|||+++..++
T Consensus 183 ~~ld~~~~~---~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 183 RFLEVVCHA---PDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred EEEeecccC---CcHHHHHHHHhcccCCCceEEeHHH
Confidence 999999997 4455799999999999999977764
No 183
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.87 E-value=4.5e-05 Score=71.02 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=71.2
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHH----HhcC---CccEEEeccCcC
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFI----ASRG---VVPLYISISQRL 292 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~a----a~rg---~i~~~~~d~~~L 292 (392)
.++..+..+....+| |+||+++|+-+..|++. +.+++++++| ....+.+ .+.| .++++.+++...
T Consensus 35 ~lL~~l~~~~~~k~v---LEIGt~~GySal~la~~l~~~g~i~tiE~~--~~~~~~A~~~~~~ag~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRV---LEIGTFTGYSALWLAEALPEDGKITTIEID--PERAEIARENFRKAGLDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHHT-SEE---EEESTTTSHHHHHHHHTSTTTSEEEEEESS--HHHHHHHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred HHHHHHHHhcCCceE---EEeccccccHHHHHHHhhcccceEEEecCc--HHHHHHHHHHHHhcCCCCcEEEEEeccHhh
Confidence 345555554443445 99999999999999973 5678885544 3443322 2223 378888875432
Q ss_pred -C-----CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 293 -P-----FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 293 -p-----f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+ ...++||+|+.-.. .......+..+.+.|+|||.+++++...
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred HHHHHhccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEccccc
Confidence 2 12468999986543 2344568888999999999999998543
No 184
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.87 E-value=8.4e-05 Score=69.74 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHH----hcCC---ccEEE-ecc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIA----SRGV---VPLYI-SIS 289 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa----~rg~---i~~~~-~d~ 289 (392)
.-.++..++.+.+.+++ |+||.+.|+-+..|+.. +-++++ +|.+....+.+. +-|. +..+. +|.
T Consensus 47 ~g~~L~~L~~~~~~k~i---LEiGT~~GySal~mA~~l~~~g~l~t--iE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 47 TGALLRLLARLSGPKRI---LEIGTAIGYSALWMALALPDDGRLTT--IERDEERAEIARENLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred HHHHHHHHHHhcCCceE---EEeecccCHHHHHHHhhCCCCCeEEE--EeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence 34455666666655555 99999999999999982 335666 556445554333 3342 45666 353
Q ss_pred Cc-CC-CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 290 QR-LP-FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 290 ~~-Lp-f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
.+ +. ...++||+|+.-.. +..-..++..+.+.|||||++++++....
T Consensus 122 l~~l~~~~~~~fDliFIDad------K~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 122 LDVLSRLLDGSFDLVFIDAD------KADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHHHhccCCCccEEEEeCC------hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 22 22 45789999986432 23345789999999999999999987554
No 185
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.84 E-value=0.00027 Score=73.64 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=81.5
Q ss_pred HHHHHHHHH--hhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcCC--ccEEEecc
Q 047630 221 LDFSIDEVL--ATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRGV--VPLYISIS 289 (392)
Q Consensus 221 ~~~lI~~ll--~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~ 289 (392)
...+...++ ...++.+| ||+++|.|.=+.++++. .-.+++ .|++..... .+.+-|. +.+...|.
T Consensus 99 sS~l~~~~L~~~~~pg~~V---LD~CAAPGgKTt~la~~l~~~g~lvA--~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~ 173 (470)
T PRK11933 99 SSMLPVAALFADDNAPQRV---LDMAAAPGSKTTQIAALMNNQGAIVA--NEYSASRVKVLHANISRCGVSNVALTHFDG 173 (470)
T ss_pred HHHHHHHHhccCCCCCCEE---EEeCCCccHHHHHHHHHcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEeCch
Confidence 344445555 44566655 99999999988888873 235677 445344443 3333353 34455666
Q ss_pred CcCC-CCCCcccEEE----Ecc--cccc-------cCCc------hhHHHHHHHHHHcccCCcEEEEEeecccccchHHH
Q 047630 290 QRLP-FFDNTLDIVH----SMH--VLSN-------WIPT------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDV 349 (392)
Q Consensus 290 ~~Lp-f~d~sFDlV~----s~~--~l~~-------~~~~------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~ 349 (392)
..+. ...+.||.|+ |+. ++.. |... ....++|..+.+.|||||+++.+...-..++.++.
T Consensus 174 ~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~v 253 (470)
T PRK11933 174 RVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAV 253 (470)
T ss_pred hhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHH
Confidence 5542 3346799999 442 1211 1000 01257899999999999999888765555555566
Q ss_pred HHHHHHHcC
Q 047630 350 YVPLIESVG 358 (392)
Q Consensus 350 l~~ll~~aG 358 (392)
+..++++.+
T Consensus 254 V~~~L~~~~ 262 (470)
T PRK11933 254 CLWLKETYP 262 (470)
T ss_pred HHHHHHHCC
Confidence 777777753
No 186
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=8.8e-05 Score=68.59 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=66.3
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH----cCCEEEEEecCCCchhHH----------------HHHhcCCccEEEeccC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME----RNITIVTTSMNLNGPFNN----------------FIASRGVVPLYISISQ 290 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~----~g~~vvg~~iD~~a~~~~----------------~aa~rg~i~~~~~d~~ 290 (392)
+.++-+. ||+|.|+|+++..++. .|..++| |+.-++..+ ...+++.+.++++|..
T Consensus 80 L~pG~s~---LdvGsGSGYLt~~~~~mvg~~g~~~~G--IEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr 154 (237)
T KOG1661|consen 80 LQPGASF---LDVGSGSGYLTACFARMVGATGGNVHG--IEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR 154 (237)
T ss_pred hccCcce---eecCCCccHHHHHHHHHhcCCCccccc--hhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc
Confidence 5778888 9999999998888775 3444455 554222222 1123344678889988
Q ss_pred cCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 291 RLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 291 ~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..--....||.||+...-. ++.+++...|++||.+++-.
T Consensus 155 ~g~~e~a~YDaIhvGAaa~---------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 155 KGYAEQAPYDAIHVGAAAS---------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ccCCccCCcceEEEccCcc---------ccHHHHHHhhccCCeEEEee
Confidence 8776788999999985432 24578888999999998774
No 187
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.79 E-value=9.2e-05 Score=67.39 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=74.9
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHH--cCCE---------EEEEecCCCchhHH----HHHhcC---CccEEEecc
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMME--RNIT---------IVTTSMNLNGPFNN----FIASRG---VVPLYISIS 289 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~--~g~~---------vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~ 289 (392)
+....++..+ ||--||+|.+....+. .+.. ++|.|+|. .... ++...+ .+.+...|+
T Consensus 23 la~~~~~~~v---lDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~--~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 23 LAGWRPGDVV---LDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDP--KAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HTT--TTS-E---EETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSH--HHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HhCCCCCCEE---eecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCH--HHHHHHHHHHHhcccCCceEEEecch
Confidence 3334444444 9999999999877665 3333 66766554 3332 222223 367888899
Q ss_pred CcCCCCCCcccEEEEcccccccCC-c----hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 290 QRLPFFDNTLDIVHSMHVLSNWIP-T----TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 290 ~~Lpf~d~sFDlV~s~~~l~~~~~-~----~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
.++++.++++|.|+++..+-.-.. . .-...+++++.|+|++...+++.... . +.+.+...+++..+-
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~----~----~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNR----E----LEKALGLKGWRKRKL 169 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCC----C----HHHHHTSTTSEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH----H----HHHHhcchhhceEEE
Confidence 999988899999999865532111 1 22345788999999994444444322 1 555677777777665
Q ss_pred EEe
Q 047630 365 VVG 367 (392)
Q Consensus 365 ~~~ 367 (392)
..+
T Consensus 170 ~~~ 172 (179)
T PF01170_consen 170 YNG 172 (179)
T ss_dssp EET
T ss_pred EEe
Confidence 533
No 188
>PRK04148 hypothetical protein; Provisional
Probab=97.78 E-value=0.00031 Score=61.01 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=63.8
Q ss_pred EEEEEcCCcch-HHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC-CCcccEEEEcccccccCCchh
Q 047630 239 IGLDIGGGVAT-FAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF-DNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 239 ~VLDIGCGtG~-~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~~~~~~ 316 (392)
.+||||||+|. ++..|++.|.+|+++|++. ...+.+.+++ +.++++|..+-.+. -..+|+|.+...- .+
T Consensus 19 kileIG~GfG~~vA~~L~~~G~~ViaIDi~~--~aV~~a~~~~-~~~v~dDlf~p~~~~y~~a~liysirpp------~e 89 (134)
T PRK04148 19 KIVELGIGFYFKVAKKLKESGFDVIVIDINE--KAVEKAKKLG-LNAFVDDLFNPNLEIYKNAKLIYSIRPP------RD 89 (134)
T ss_pred EEEEEEecCCHHHHHHHHHCCCEEEEEECCH--HHHHHHHHhC-CeEEECcCCCCCHHHHhcCCEEEEeCCC------HH
Confidence 45999999996 9999999999999966554 4455566665 58889987764432 2458999987643 44
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecc
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+...+.++.+.+ |.-++|..+..
T Consensus 90 l~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 90 LQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred HHHHHHHHHHHc--CCCEEEEcCCC
Confidence 444556666544 45677776544
No 189
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.72 E-value=0.00061 Score=65.49 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=60.7
Q ss_pred EEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHH----HHhc---CCccEEEe----c-cCcCCCCCCcccEEEE
Q 047630 239 IGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNF----IASR---GVVPLYIS----I-SQRLPFFDNTLDIVHS 304 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~----aa~r---g~i~~~~~----d-~~~Lpf~d~sFDlV~s 304 (392)
.+||+|||+|.++..++.. ...+++ +|.+...... +.+. |.+.++.. + ....+..++.+|++++
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~A--iD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTA--IDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEE--EeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 4599999999999999883 455666 4552222222 2221 33444432 2 2334556799999999
Q ss_pred cccccccCC-----------------------chhHHHHHHHHHHcccCCcEEEEEee
Q 047630 305 MHVLSNWIP-----------------------TTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 305 ~~~l~~~~~-----------------------~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+-....-.+ .+.+..++.-+.|.|+|||.+++.-.
T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 855432111 01133456667899999999998865
No 190
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00076 Score=62.56 Aligned_cols=133 Identities=20% Similarity=0.180 Sum_probs=81.7
Q ss_pred EEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC--------CCCCcccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--------FFDNTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--------f~d~sFDlV~s~~~l 308 (392)
|+|+|+-.|.++..++++ +..|+++|++...+. .| +.++++|+..-+ +....+|+|++-.+-
T Consensus 49 ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~------~~-V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap 121 (205)
T COG0293 49 VVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI------PG-VIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAP 121 (205)
T ss_pred EEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC------CC-ceEEeeeccCccHHHHHHHHcCCCCcceEEecCCC
Confidence 499999999999988884 234888666542211 12 677788765432 234457999976444
Q ss_pred --------cccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCccccee
Q 047630 309 --------SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPELREMY 380 (392)
Q Consensus 309 --------~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~~~e~y 380 (392)
+|...-...+.++.-+.++|+|||.|++-.|.....+. +...+++. |+.++.......- ....|.|
T Consensus 122 ~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~---~l~~~~~~-F~~v~~~KP~aSR--~~S~E~y 195 (205)
T COG0293 122 NTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFED---LLKALRRL-FRKVKIFKPKASR--KRSREIY 195 (205)
T ss_pred CcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHH---HHHHHHHh-hceeEEecCcccc--CCCceEE
Confidence 22211122234556667899999999999887654332 44455543 8888776443322 1334888
Q ss_pred eEEEE
Q 047630 381 LSALL 385 (392)
Q Consensus 381 lsai~ 385 (392)
+.+..
T Consensus 196 ~v~~~ 200 (205)
T COG0293 196 LVAKG 200 (205)
T ss_pred EEEec
Confidence 74443
No 191
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.70 E-value=8e-05 Score=73.08 Aligned_cols=71 Identities=11% Similarity=0.212 Sum_probs=51.1
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh-------cCCccEEEeccCcCCCCCCcccEEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS-------RGVVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~-------rg~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
+.++..+ ||||||+|.++..+++.+..++++++|. .+.+.+.+ .+.++++.+|+...++ ..||.|+
T Consensus 34 ~~~~~~V---LEIG~G~G~LT~~Ll~~~~~V~avEiD~--~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~Vv 106 (294)
T PTZ00338 34 IKPTDTV---LEIGPGTGNLTEKLLQLAKKVIAIEIDP--RMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCV 106 (294)
T ss_pred CCCcCEE---EEecCchHHHHHHHHHhCCcEEEEECCH--HHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEE
Confidence 4444445 9999999999999999888899966554 44443222 1247888999877665 3689999
Q ss_pred Ecccc
Q 047630 304 SMHVL 308 (392)
Q Consensus 304 s~~~l 308 (392)
++..+
T Consensus 107 aNlPY 111 (294)
T PTZ00338 107 ANVPY 111 (294)
T ss_pred ecCCc
Confidence 87655
No 192
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.55 E-value=0.00049 Score=63.16 Aligned_cols=95 Identities=13% Similarity=-0.012 Sum_probs=58.2
Q ss_pred EEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC---CccEEEeccCcC-C-C-CCC-cccEEEEccc
Q 047630 240 GLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG---VVPLYISISQRL-P-F-FDN-TLDIVHSMHV 307 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~L-p-f-~d~-sFDlV~s~~~ 307 (392)
|||++||+|.++..++.+|. .|++++.|. .... .+...+ .+.++.+|+.+. . + ... .||+|+.--.
T Consensus 53 vLDLfaGsG~lglea~srga~~v~~vE~~~--~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP 130 (189)
T TIGR00095 53 LLDVFAGSGLLGEEALSRGAKVAFLEEDDR--KANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP 130 (189)
T ss_pred EEEecCCCcHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC
Confidence 49999999999999999987 688855544 3222 222223 246777776432 2 1 122 3677776544
Q ss_pred ccccCCchhHHHHHHHHH--HcccCCcEEEEEeec
Q 047630 308 LSNWIPTTLLHFLMFDIY--RVLRPGGLFWLDHFF 340 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~--RvLKPGG~lii~~~~ 340 (392)
+.. .....++..+. ..|+++|.+++.+..
T Consensus 131 y~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 131 FFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 422 22233444443 478999988887643
No 193
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.51 E-value=0.00036 Score=66.86 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=70.2
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCc
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQR 291 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~ 291 (392)
..++..++...+..++ |+||+++|+-+..|++. +.++++++.| ....+. ..+.| .+.++.+++.+
T Consensus 68 g~lL~~l~~~~~ak~i---LEiGT~~GySal~la~al~~~g~v~tiE~~--~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 68 GQFLNMLLKLINAKNT---MEIGVYTGYSLLATALALPEDGKILAMDIN--RENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHHhCCCEE---EEEeChhhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 3445555555444445 99999999999999872 4467775544 333332 22334 37788887543
Q ss_pred C-CC------CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 292 L-PF------FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 292 L-pf------~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
. +- ..++||+|+.-.- +......+..+.+.|+|||++++++..
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHHHHHhccccCCcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 2 21 1368999986533 233456788889999999999999754
No 194
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.49 E-value=0.00078 Score=66.33 Aligned_cols=118 Identities=14% Similarity=0.210 Sum_probs=71.5
Q ss_pred ccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 237 IRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
-++|||+|||+|.++...++.|. +|+++. . +.+.+.+. .+. .|.++.+-++++.+| +..|+|++--.-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvE--A-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVE--A-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEe--h-hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 35689999999999998888775 577744 2 23333222 222 266777888888775 468999986433
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEe--ecccccchHHHHHHHHHHcCC
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDH--FFCVGAQLEDVYVPLIESVGF 359 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~--~~~~~~~l~~~l~~ll~~aGf 359 (392)
..+..+..+ +..-...|.|||.|..+-.. ..-..-..+..+.+++.++.|
T Consensus 254 ~mL~NERML-EsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnF 305 (517)
T KOG1500|consen 254 YMLVNERML-ESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANF 305 (517)
T ss_pred hhhhhHHHH-HHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhh
Confidence 232233333 34445669999999885332 110001113446777777655
No 195
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.41 E-value=0.002 Score=64.38 Aligned_cols=125 Identities=15% Similarity=0.089 Sum_probs=87.1
Q ss_pred EEEEcCCcchHHHHHHHcCCE-EEEEecCCCchhH--HHHHhcC---CccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 240 GLDIGGGVATFAVRMMERNIT-IVTTSMNLNGPFN--NFIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~-vvg~~iD~~a~~~--~~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
|||+=+|.|.|+..++..+.. |+++|+|+.+-.. +++..++ .+..+++|+..++..-+.||-|++...-..
T Consensus 192 V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~~a--- 268 (341)
T COG2520 192 VLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPKSA--- 268 (341)
T ss_pred EEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCCcc---
Confidence 499999999999999997765 8886666533222 1333343 267889999888766588999998765421
Q ss_pred chhHHHHHHHHHHcccCCcEEEEEeecccccc---hHHHHHHHHHHcC--CeEEEEEEeeccC
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ---LEDVYVPLIESVG--FNKLKWVVGRKLD 371 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~---l~~~l~~ll~~aG--f~~i~w~~~~k~d 371 (392)
..++..+.+.+|+||++-+.++...... ....+.....+.| .+...|..+.+.-
T Consensus 269 ----~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~Vksys 327 (341)
T COG2520 269 ----HEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYS 327 (341)
T ss_pred ----hhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecccC
Confidence 2477888899999999977766554432 3455666666666 4556666665543
No 196
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.40 E-value=0.0019 Score=57.95 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=73.2
Q ss_pred EEEEcCCcchHHHHHHHcCC---EEEEEecCCCchhHHHHHhcC-CccEEEeccCcCC-----CCCCcccEEEEcccccc
Q 047630 240 GLDIGGGVATFAVRMMERNI---TIVTTSMNLNGPFNNFIASRG-VVPLYISISQRLP-----FFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~---~vvg~~iD~~a~~~~~aa~rg-~i~~~~~d~~~Lp-----f~d~sFDlV~s~~~l~~ 310 (392)
||++|.|||-++.++.++|+ .+++ ++.+.++.....++- -+.++.+|+.++. +.+..||.|+|...+-.
T Consensus 52 VlElGPGTGV~TkaIL~~gv~~~~L~~--iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~ 129 (194)
T COG3963 52 VLELGPGTGVITKAILSRGVRPESLTA--IEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLN 129 (194)
T ss_pred eEEEcCCccHhHHHHHhcCCCccceEE--EEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccccc
Confidence 49999999999999999764 4555 444446655444332 3578888877664 46778999999987766
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+ +....-++|+++...|++||.++-..+..
T Consensus 130 ~-P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 130 F-PMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred C-cHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 4 33444579999999999999998777653
No 197
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.38 E-value=0.0025 Score=64.37 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcC-C
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRL-P 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~L-p 293 (392)
.+.+++.+........ ..|||++||+|.++..+++....|++++++. ...+. +...+ .+.++.+|+.++ +
T Consensus 192 ~e~l~~~v~~~~~~~~-~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~--~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKGSK-GDLLELYCGNGNFTLALARNFRRVLATEISK--PSVAAAQYNIAANGIDNVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhcCC-CeEEEEeccccHHHHHHHhhCCEEEEEECCH--HHHHHHHHHHHHhCCCcEEEEECCHHHHHH
Confidence 5556666655432211 2359999999999999998777898855543 44332 22334 266888886552 1
Q ss_pred -CC--------------CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC
Q 047630 294 -FF--------------DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 294 -f~--------------d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG 358 (392)
+. ...||+|+..-.-.. ..+.+++.+.+ |+++++++.-. ..+...+..+. + |
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G-----~~~~~l~~l~~---~~~ivyvSC~p---~tlarDl~~L~-~-g 335 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG-----LDDETLKLVQA---YERILYISCNP---ETLCENLETLS-Q-T 335 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCCCC-----CcHHHHHHHHc---cCCEEEEEeCH---HHHHHHHHHHc-C-C
Confidence 10 225899987644321 11234455543 78888777432 34445455544 3 8
Q ss_pred CeEEEEEEee
Q 047630 359 FNKLKWVVGR 368 (392)
Q Consensus 359 f~~i~w~~~~ 368 (392)
|+..+.....
T Consensus 336 Y~l~~v~~~D 345 (362)
T PRK05031 336 HKVERFALFD 345 (362)
T ss_pred cEEEEEEEcc
Confidence 9887776554
No 198
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.37 E-value=0.00025 Score=65.84 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=57.5
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhH--HHHHhcC---CccEEEeccCcCCCCCCcccEEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFN--NFIASRG---VVPLYISISQRLPFFDNTLDIVHS 304 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~--~~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s 304 (392)
.++..| ||+.||.|.|+..+++ ++..|+++|+++.+-.. +.+..++ .+..+.+|...+.- .+.||-|++
T Consensus 100 ~~~e~V---lD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim 175 (200)
T PF02475_consen 100 KPGEVV---LDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIM 175 (200)
T ss_dssp -TT-EE---EETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE
T ss_pred CcceEE---EEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEE
Confidence 344444 9999999999999999 67789996665422111 1333333 36678889888765 789999998
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEE
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~l 334 (392)
...-.. ..+|..+.+++|+||++
T Consensus 176 ~lp~~~-------~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 176 NLPESS-------LEFLDAALSLLKEGGII 198 (200)
T ss_dssp --TSSG-------GGGHHHHHHHEEEEEEE
T ss_pred CChHHH-------HHHHHHHHHHhcCCcEE
Confidence 754322 14788899999999986
No 199
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.24 E-value=0.0021 Score=58.83 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=73.1
Q ss_pred EEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 239 IGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.++|||+|.|.-+..++= ...+++. +|.......+ +.+-+ .+.++.+.++. +.....||+|++-.+- .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~L--vEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~-~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTL--VESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA-P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEE--EESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS-S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEE--EeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc-C
Confidence 459999999987766665 4566777 5553444432 22334 26677777777 5567899999986553 2
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
+..++.-+...|++||.+++..-....+++. +....++..|.+.....
T Consensus 127 ------l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~-~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 127 ------LDKLLELARPLLKPGGRLLAYKGPDAEEELE-EAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp ------HHHHHHHHGGGEEEEEEEEEEESS--HHHHH-THHHHHHCCCEEEEEEE
T ss_pred ------HHHHHHHHHHhcCCCCEEEEEcCCChHHHHH-HHHhHHHHhCCEEeeec
Confidence 2358888899999999998775433333332 25555666665555443
No 200
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0009 Score=64.35 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=63.1
Q ss_pred cccceeccCCCCcHHHHHHHHHh---hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C
Q 047630 208 EKIRWTQKKGNGGLDFSIDEVLA---TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G 280 (392)
Q Consensus 208 e~~~w~~~~~~~~~~~lI~~ll~---l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g 280 (392)
-+|+|+.... .++.+.+ +.++..| ||||+|.|.++..|++++..|+++.+|. ...+...++ +
T Consensus 8 ~GQnFL~d~~------v~~kIv~~a~~~~~d~V---lEIGpG~GaLT~~Ll~~~~~v~aiEiD~--~l~~~L~~~~~~~~ 76 (259)
T COG0030 8 LGQNFLIDKN------VIDKIVEAANISPGDNV---LEIGPGLGALTEPLLERAARVTAIEIDR--RLAEVLKERFAPYD 76 (259)
T ss_pred cccccccCHH------HHHHHHHhcCCCCCCeE---EEECCCCCHHHHHHHhhcCeEEEEEeCH--HHHHHHHHhccccc
Confidence 3467766433 2444433 3343444 9999999999999999999999966664 444433333 3
Q ss_pred CccEEEeccCcCCCCCC-cccEEEEcccc
Q 047630 281 VVPLYISISQRLPFFDN-TLDIVHSMHVL 308 (392)
Q Consensus 281 ~i~~~~~d~~~Lpf~d~-sFDlV~s~~~l 308 (392)
.+.++.+|+-..++++- .++.|+++...
T Consensus 77 n~~vi~~DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 77 NLTVINGDALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred ceEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence 47889999999888654 68899988655
No 201
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.23 E-value=0.00078 Score=68.53 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=59.7
Q ss_pred EEEEcCCcchHHHHHHHc-C-CEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 240 GLDIGGGVATFAVRMMER-N-ITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~-g-~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
|||++||+|.++..++.. + ..|+++|+|. ...+ ++..++. +.+..+|+..+....+.||+|+..- +
T Consensus 61 vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~--~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~--- 134 (382)
T PRK04338 61 VLDALSASGIRGIRYALETGVEKVTLNDINP--DAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F--- 134 (382)
T ss_pred EEECCCcccHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C---
Confidence 499999999999999764 4 3788866554 3333 2223332 3467777665422146799999853 2
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+ ..++..+.+.+++||+++++.
T Consensus 135 Gs~---~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 GSP---APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CCc---HHHHHHHHHHhcCCCEEEEEe
Confidence 111 247778778899999998883
No 202
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.02 Score=57.79 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=86.7
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc----CCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER----NITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQ 290 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~----g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~ 290 (392)
...+...++...++..| ||+.++.|.=+.++++. +..|+++| .+..... .+.+-|. +..+..|..
T Consensus 144 sS~l~a~~L~p~pge~V---lD~cAAPGGKTthla~~~~~~~~iV~A~D--~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~ 218 (355)
T COG0144 144 ASQLPALVLDPKPGERV---LDLCAAPGGKTTHLAELMENEGAIVVAVD--VSPKRLKRLRENLKRLGVRNVIVVNKDAR 218 (355)
T ss_pred HHHHHHHHcCCCCcCEE---EEECCCCCCHHHHHHHhcCCCCceEEEEc--CCHHHHHHHHHHHHHcCCCceEEEecccc
Confidence 45566667777777666 99999999977777773 45567744 4344443 3334453 345666665
Q ss_pred cCCC---CCCcccEEEEc------ccccc-----cC-Cch-------hHHHHHHHHHHcccCCcEEEEEeecccccchHH
Q 047630 291 RLPF---FDNTLDIVHSM------HVLSN-----WI-PTT-------LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348 (392)
Q Consensus 291 ~Lpf---~d~sFDlV~s~------~~l~~-----~~-~~~-------~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~ 348 (392)
.++- ..+.||.|+.- .++.. |. ... -..++|..+.+.|||||.|+.++.--..++-++
T Consensus 219 ~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~ 298 (355)
T COG0144 219 RLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEE 298 (355)
T ss_pred cccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHH
Confidence 5532 22359999853 22211 10 011 134689999999999999999986655566666
Q ss_pred HHHHHHHHc-CCeEE
Q 047630 349 VYVPLIESV-GFNKL 362 (392)
Q Consensus 349 ~l~~ll~~a-Gf~~i 362 (392)
.+..++++. +|+.+
T Consensus 299 vV~~~L~~~~~~~~~ 313 (355)
T COG0144 299 VVERFLERHPDFELE 313 (355)
T ss_pred HHHHHHHhCCCceee
Confidence 677788775 44433
No 203
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.12 E-value=0.00018 Score=66.51 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=84.0
Q ss_pred HHHHHHhhC---CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCccc
Q 047630 224 SIDEVLATK---KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLD 300 (392)
Q Consensus 224 lI~~ll~l~---~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFD 300 (392)
...+++.+. .+....++||+|+|.|.++..|+..--+|+++. ++..+.....+++. .++ +..+- --.+-+||
T Consensus 97 QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATE--lS~tMr~rL~kk~y-nVl-~~~ew-~~t~~k~d 171 (288)
T KOG3987|consen 97 QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATE--LSWTMRDRLKKKNY-NVL-TEIEW-LQTDVKLD 171 (288)
T ss_pred HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHH--hhHHHHHHHhhcCC-cee-eehhh-hhcCceee
Confidence 344555443 123334569999999999999987655566533 32233334444442 221 11111 11345699
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccC-CcEEEEEee------cc---------c----------ccchHHHHHHHH
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRP-GGLFWLDHF------FC---------V----------GAQLEDVYVPLI 354 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKP-GG~lii~~~------~~---------~----------~~~l~~~l~~ll 354 (392)
+|.|...+....++- ++|++++.+|+| .|.+++.-. .. + .++-...+.+++
T Consensus 172 li~clNlLDRc~~p~---kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~l 248 (288)
T KOG3987|consen 172 LILCLNLLDRCFDPF---KLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELL 248 (288)
T ss_pred hHHHHHHHHhhcChH---HHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHH
Confidence 999998887643333 589999999999 888866532 11 0 011134467889
Q ss_pred HHcCCeEEEEEEee
Q 047630 355 ESVGFNKLKWVVGR 368 (392)
Q Consensus 355 ~~aGf~~i~w~~~~ 368 (392)
+.+||.+..|....
T Consensus 249 r~~g~~veawTrlP 262 (288)
T KOG3987|consen 249 RNCGYRVEAWTRLP 262 (288)
T ss_pred HhcCchhhhhhcCC
Confidence 99999999998655
No 204
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.12 E-value=0.0096 Score=55.92 Aligned_cols=143 Identities=10% Similarity=0.129 Sum_probs=82.1
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-c--CCEEEEEecCCCchhHH----HHHhcCCccEEEeccCc---CCCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-R--NITIVTTSMNLNGPFNN----FIASRGVVPLYISISQR---LPFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~--g~~vvg~~iD~~a~~~~----~aa~rg~i~~~~~d~~~---Lpf~d~sFD 300 (392)
+.++.+| |-+|..+|....++++ - .-.|++ ++.+..... .+.+|..+--+.+|+.. ....-+.+|
T Consensus 71 ik~gskV---LYLGAasGTTVSHvSDIvg~~G~VYa--VEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 71 IKPGSKV---LYLGAASGTTVSHVSDIVGPDGVVYA--VEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp --TT-EE---EEETTTTSHHHHHHHHHHTTTSEEEE--EESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EE
T ss_pred CCCCCEE---EEecccCCCccchhhhccCCCCcEEE--EEecchhHHHHHHHhccCCceeeeeccCCChHHhhccccccc
Confidence 4566677 9999999999888888 2 335677 445332222 34445443334455432 112234789
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec------ccccchHHHHHHHHHHcCCeEEEEEEeeccCCCC
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF------CVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGP 374 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~------~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~ 374 (392)
+|++-- ..+++.+-++.++...||+||.+++.--. ...+...+.-.+.+++.||+.++-...+..+
T Consensus 146 vI~~DV-----aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~--- 217 (229)
T PF01269_consen 146 VIFQDV-----AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYE--- 217 (229)
T ss_dssp EEEEE------SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTS---
T ss_pred EEEecC-----CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCC---
Confidence 998743 33456677899999999999999887422 1122223334455677789998877554443
Q ss_pred cccceeeEEEEEc
Q 047630 375 ELREMYLSALLEK 387 (392)
Q Consensus 375 ~~~e~ylsai~~K 387 (392)
.+...+.+.++|
T Consensus 218 -~dH~~vv~~y~~ 229 (229)
T PF01269_consen 218 -RDHAMVVGRYRK 229 (229)
T ss_dssp -TTEEEEEEEE--
T ss_pred -CCcEEEEEEecC
Confidence 445545556554
No 205
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.10 E-value=0.01 Score=60.42 Aligned_cols=125 Identities=10% Similarity=0.045 Sum_probs=80.2
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcCC----ccEEEeccCcC----CCCCC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRGV----VPLYISISQRL----PFFDN 297 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg~----i~~~~~d~~~L----pf~d~ 297 (392)
...+.++ ||+=|=||.++.+.+..|+ +|+.+|++- .... ++.-+|. +.++++|+..+ .-...
T Consensus 215 ~~~Gkrv---LNlFsYTGgfSv~Aa~gGA~~vt~VD~S~--~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~ 289 (393)
T COG1092 215 LAAGKRV---LNLFSYTGGFSVHAALGGASEVTSVDLSK--RALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGE 289 (393)
T ss_pred hccCCeE---EEecccCcHHHHHHHhcCCCceEEEeccH--HHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCC
Confidence 3345666 9999999999999999998 898855443 3322 3333443 56888885543 22345
Q ss_pred cccEEEEccc-ccc-----cCCchhHHHHHHHHHHcccCCcEEEEEeeccc--ccchHHHHHHHHHHcCCe
Q 047630 298 TLDIVHSMHV-LSN-----WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV--GAQLEDVYVPLIESVGFN 360 (392)
Q Consensus 298 sFDlV~s~~~-l~~-----~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~--~~~l~~~l~~ll~~aGf~ 360 (392)
+||+|+.--. +.. |.-..+...++..+.++|+|||.+++..-... .+...+.+.+.+...|..
T Consensus 290 ~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~ 360 (393)
T COG1092 290 KFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRR 360 (393)
T ss_pred cccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCc
Confidence 8999997522 111 11123456788999999999999988864332 233344455555665533
No 206
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.08 E-value=0.012 Score=58.57 Aligned_cols=139 Identities=12% Similarity=0.153 Sum_probs=78.5
Q ss_pred EEEEcCCcchHHHHHHH----c--CCEEEEEecCCCchhHHHHHhc----C--CccE--EEeccCc----CCC--CCCcc
Q 047630 240 GLDIGGGVATFAVRMME----R--NITIVTTSMNLNGPFNNFIASR----G--VVPL--YISISQR----LPF--FDNTL 299 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~----~--g~~vvg~~iD~~a~~~~~aa~r----g--~i~~--~~~d~~~----Lpf--~d~sF 299 (392)
++|+|||.|.=+..|.+ . ....++ +|++.+..+.+.++ . .+.+ ++++..+ ++- .....
T Consensus 80 lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~p--lDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 80 LVELGSGNLRKVGILLEALERQKKSVDYYA--LDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred EEEECCCchHHHHHHHHHHHhcCCCceEEE--EECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 49999999985554443 3 344555 66655555533322 1 1222 4565433 321 12345
Q ss_pred cEEEEc-ccccccCCchhHHHHHHHHHH-cccCCcEEEEEeecccccch------------HHHHHHHH----HHcC---
Q 047630 300 DIVHSM-HVLSNWIPTTLLHFLMFDIYR-VLRPGGLFWLDHFFCVGAQL------------EDVYVPLI----ESVG--- 358 (392)
Q Consensus 300 DlV~s~-~~l~~~~~~~~l~~~L~el~R-vLKPGG~lii~~~~~~~~~l------------~~~l~~ll----~~aG--- 358 (392)
.+++.. .++.++ ++.....+|+++.+ .|+|||.|++..-.+...+. .+...+++ ...|
T Consensus 158 r~~~flGSsiGNf-~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg~~~ 236 (319)
T TIGR03439 158 TTILWLGSSIGNF-SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANEILGSEA 236 (319)
T ss_pred cEEEEeCccccCC-CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHHHHHHHhCccc
Confidence 677665 467675 44555689999999 99999999886533322211 12122222 2223
Q ss_pred CeEEEEEEeeccCCCCcccceee
Q 047630 359 FNKLKWVVGRKLDRGPELREMYL 381 (392)
Q Consensus 359 f~~i~w~~~~k~d~~~~~~e~yl 381 (392)
|..-.|......+.....-+.|+
T Consensus 237 Fd~~~f~h~a~~n~~~~rie~~l 259 (319)
T TIGR03439 237 FREEDWEFLGEWDEELGRHEAFY 259 (319)
T ss_pred cCHHHcEEEEEEcCCCCeEEEEE
Confidence 76777777666665444456665
No 207
>PLN02823 spermine synthase
Probab=97.05 E-value=0.0023 Score=64.03 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=62.6
Q ss_pred cccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc----------CCccEEEeccCcC-CCCCCcccEE
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQRL-PFFDNTLDIV 302 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~L-pf~d~sFDlV 302 (392)
..+.||.||+|.|..+..+.+.. ..++.+++|. ...+.+.+. ..++++.+|.... ...+++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~--~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ--EVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 34566999999999999888743 3577755554 444332221 1356777775542 3346789999
Q ss_pred EEcccccccC--Cch--hHHHHHH-HHHHcccCCcEEEEE
Q 047630 303 HSMHVLSNWI--PTT--LLHFLMF-DIYRVLRPGGLFWLD 337 (392)
Q Consensus 303 ~s~~~l~~~~--~~~--~l~~~L~-el~RvLKPGG~lii~ 337 (392)
+.-. ...+. +.. --.++++ .+.+.|+|||++++.
T Consensus 181 i~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9763 22110 010 1235777 899999999998765
No 208
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.05 E-value=0.01 Score=59.74 Aligned_cols=130 Identities=11% Similarity=0.040 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhCC--CCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcC
Q 047630 221 LDFSIDEVLATKK--PGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~--~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~L 292 (392)
.+.+++.+.+... +++ |||++||+|.++..+++....|++++++ ....+. +...+ .+.++.+|+.++
T Consensus 183 ~~~l~~~v~~~~~~~~~~---vlDl~~G~G~~sl~la~~~~~v~~vE~~--~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 183 NIKMLEWACEVTQGSKGD---LLELYCGNGNFSLALAQNFRRVLATEIA--KPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHHHHhhcCCCc---EEEEeccccHHHHHHHHhCCEEEEEECC--HHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 4556666655442 223 5999999999999999877788885544 344432 22233 267888886553
Q ss_pred C--------C---C-----CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHH
Q 047630 293 P--------F---F-----DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIES 356 (392)
Q Consensus 293 p--------f---~-----d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~ 356 (392)
- + . ...||+|+..-.-.. ..+.+++.+. +|+++++++.- ...+...+..+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G-----~~~~~l~~l~---~~~~ivYvsC~---p~tlaRDl~~L~-- 324 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG-----LDPDTCKLVQ---AYERILYISCN---PETLKANLEQLS-- 324 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCCCCC-----CcHHHHHHHH---cCCcEEEEEcC---HHHHHHHHHHHh--
Confidence 1 1 0 113798886543211 1123445444 47888888742 334444455444
Q ss_pred cCCeEEEEEEee
Q 047630 357 VGFNKLKWVVGR 368 (392)
Q Consensus 357 aGf~~i~w~~~~ 368 (392)
.||+..+.....
T Consensus 325 ~~Y~l~~v~~~D 336 (353)
T TIGR02143 325 ETHRVERFALFD 336 (353)
T ss_pred cCcEEEEEEEcc
Confidence 247776665443
No 209
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.03 E-value=0.0018 Score=63.47 Aligned_cols=132 Identities=16% Similarity=0.133 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH---------cCCEEEEEecCCCchhHH----HHHhcCC----cc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME---------RNITIVTTSMNLNGPFNN----FIASRGV----VP 283 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~---------~g~~vvg~~iD~~a~~~~----~aa~rg~----i~ 283 (392)
...++.+++...++.+| ||-+||+|.|...+.+ ....++|+|+|. .... .+.-++. ..
T Consensus 34 i~~l~~~~~~~~~~~~V---lDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~--~~~~la~~nl~l~~~~~~~~~ 108 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSV---LDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDP--EAVALAKLNLLLHGIDNSNIN 108 (311)
T ss_dssp HHHHHHHHHTT-TTEEE---EETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-H--HHHHHHHHHHHHTTHHCBGCE
T ss_pred HHHHHHhhhhcccccee---echhhhHHHHHHHHHHhhcccccccccceeEeecCcH--HHHHHHHhhhhhhcccccccc
Confidence 44455555533333334 9999999999887765 456788866554 2222 1122331 23
Q ss_pred EEEeccCcCCCC--CCcccEEEEccccccc--CCc----------------hhHHHHHHHHHHcccCCcEEEEEeecc--
Q 047630 284 LYISISQRLPFF--DNTLDIVHSMHVLSNW--IPT----------------TLLHFLMFDIYRVLRPGGLFWLDHFFC-- 341 (392)
Q Consensus 284 ~~~~d~~~Lpf~--d~sFDlV~s~~~l~~~--~~~----------------~~l~~~L~el~RvLKPGG~lii~~~~~-- 341 (392)
+..+|....+.. ...||+|+++..+... ... ..--.++..+.+.||+||++.+.....
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L 188 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFL 188 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHH
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhh
Confidence 666665444332 4789999998554322 110 111247888999999999875554321
Q ss_pred cccchHHHHHHHHHHc
Q 047630 342 VGAQLEDVYVPLIESV 357 (392)
Q Consensus 342 ~~~~l~~~l~~ll~~a 357 (392)
........+++.+-+.
T Consensus 189 ~~~~~~~~iR~~ll~~ 204 (311)
T PF02384_consen 189 FSSSSEKKIRKYLLEN 204 (311)
T ss_dssp HGSTHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHhh
Confidence 1122233466555543
No 210
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.03 E-value=0.0049 Score=57.94 Aligned_cols=110 Identities=13% Similarity=0.103 Sum_probs=70.2
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH---cCCEEEEEecCCCchhHH--HHHhcC---CccEEEeccCc-C-
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME---RNITIVTTSMNLNGPFNN--FIASRG---VVPLYISISQR-L- 292 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~---~g~~vvg~~iD~~a~~~~--~aa~rg---~i~~~~~d~~~-L- 292 (392)
.+++.+.++...++. ||||.=||+-+..+|. .+-.++++++|.++.... .....| .+.++++.+.+ |
T Consensus 63 ~fl~~li~~~~ak~~---lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 63 QFLQMLIRLLNAKRT---LELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHhCCceE---EEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHH
Confidence 345555555554555 9999999997777766 355788866655322221 233333 36777775332 2
Q ss_pred ----CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 293 ----PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 293 ----pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
....++||+|+. .+|.+ .--..+.++.+.||+||+++++...+
T Consensus 140 ~l~~~~~~~tfDfaFv----DadK~--nY~~y~e~~l~Llr~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFV----DADKD--NYSNYYERLLRLLRVGGVIVVDNVLW 186 (237)
T ss_pred HHHhcCCCCceeEEEE----ccchH--HHHHHHHHHHhhcccccEEEEecccc
Confidence 225689999984 33322 22268899999999999999998543
No 211
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.98 E-value=0.012 Score=57.19 Aligned_cols=135 Identities=16% Similarity=0.040 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH---cCCEEEEEecCCCchhHH---HHHhcCC----ccEEEec-c
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME---RNITIVTTSMNLNGPFNN---FIASRGV----VPLYISI-S 289 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~---~g~~vvg~~iD~~a~~~~---~aa~rg~----i~~~~~d-~ 289 (392)
....+.++....++-+.++|||+|+|.|..+....+ .-.+++. +|.+..+.. .+.+... ..+.... .
T Consensus 18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~--vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 95 (274)
T PF09243_consen 18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTC--VDRSPEMLELAKRLLRAGPNNRNAEWRRVLYR 95 (274)
T ss_pred HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeee--ecCCHHHHHHHHHHHhcccccccchhhhhhhc
Confidence 344555555433444556679999999986655555 2234555 566444433 2222221 0000000 1
Q ss_pred CcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc-ccchHHHHHHHHHHcCCeEE
Q 047630 290 QRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV-GAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 290 ~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~-~~~l~~~l~~ll~~aGf~~i 362 (392)
...++. ..|+|+++++|..+.+ .....+++.+.+.+.+ .|+|.+.... .-+.-...++.+.+.|+.++
T Consensus 96 ~~~~~~--~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 96 DFLPFP--PDDLVIASYVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred ccccCC--CCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 112222 2399999999988766 7777888888887766 7777765433 22334457777777776554
No 212
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.98 E-value=0.0032 Score=60.55 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=52.1
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-------CccEEEeccCcCCCCCCcccEEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-------VVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-------~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
+++... ||++|.|||.++..|.+.+.+|+++.+|. -+.....+|. ...++++|....++ ..||.++
T Consensus 56 ~k~tD~---VLEvGPGTGnLT~~lLe~~kkVvA~E~Dp--rmvael~krv~gtp~~~kLqV~~gD~lK~d~--P~fd~cV 128 (315)
T KOG0820|consen 56 LKPTDV---VLEVGPGTGNLTVKLLEAGKKVVAVEIDP--RMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--PRFDGCV 128 (315)
T ss_pred CCCCCE---EEEeCCCCCHHHHHHHHhcCeEEEEecCc--HHHHHHHHHhcCCCccceeeEEecccccCCC--cccceee
Confidence 444444 49999999999999999999999976664 5555555552 25678888776654 3589999
Q ss_pred Ecccc
Q 047630 304 SMHVL 308 (392)
Q Consensus 304 s~~~l 308 (392)
++...
T Consensus 129 sNlPy 133 (315)
T KOG0820|consen 129 SNLPY 133 (315)
T ss_pred ccCCc
Confidence 86443
No 213
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.97 E-value=0.0066 Score=60.56 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=59.9
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
.+||+||++|.++..|.++|..|+++| . .++.......+.+....++..++.-..+.+|.++|-.+-.. .
T Consensus 214 ~vlDLGAsPGGWT~~L~~rG~~V~AVD--~-g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~P----~--- 283 (357)
T PRK11760 214 RAVDLGAAPGGWTYQLVRRGMFVTAVD--N-GPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEKP----A--- 283 (357)
T ss_pred EEEEeCCCCcHHHHHHHHcCCEEEEEe--c-hhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccCH----H---
Confidence 349999999999999999999999955 4 44555556666677777776655323678999999766322 2
Q ss_pred HHHHHHHHcccCC
Q 047630 319 FLMFDIYRVLRPG 331 (392)
Q Consensus 319 ~~L~el~RvLKPG 331 (392)
.+.+-+.+.|..|
T Consensus 284 rva~lm~~Wl~~g 296 (357)
T PRK11760 284 RVAELMAQWLVNG 296 (357)
T ss_pred HHHHHHHHHHhcC
Confidence 4566666677665
No 214
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.011 Score=58.05 Aligned_cols=142 Identities=17% Similarity=0.145 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhCCC-----CcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhH---HHHH---hc-CC---ccEE
Q 047630 221 LDFSIDEVLATKKP-----GTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFN---NFIA---SR-GV---VPLY 285 (392)
Q Consensus 221 ~~~lI~~ll~l~~~-----~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~---~~aa---~r-g~---i~~~ 285 (392)
...+|+++..+-+. .+++ +|-=|||.|+++..++..|..+.|-. ++.-+. .++. +. +. -+|+
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~-iLvPGaGlGRLa~dla~~G~~~qGNE--fSy~Mli~S~FiLN~~~~~nq~~IYPfI 207 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIR-ILVPGAGLGRLAYDLACLGFKCQGNE--FSYFMLICSSFILNYCKQENQFTIYPFI 207 (369)
T ss_pred hhhHHHHHHhhCCCccccccCce-EEecCCCchhHHHHHHHhcccccccH--HHHHHHHHHHHHHHhhccCCcEEEEeee
Confidence 56678887766543 2443 49999999999999999999888732 211111 1222 11 10 1121
Q ss_pred E------------------------------------eccCcC---CCCCCcccEEEEcccccccCCchhHHHHHHHHHH
Q 047630 286 I------------------------------------SISQRL---PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYR 326 (392)
Q Consensus 286 ~------------------------------------~d~~~L---pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~R 326 (392)
+ ||..+. +-..++||+|+..+.+.- ..++-+.+..+..
T Consensus 208 h~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT---a~NileYi~tI~~ 284 (369)
T KOG2798|consen 208 HQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT---AHNILEYIDTIYK 284 (369)
T ss_pred eccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec---hHHHHHHHHHHHH
Confidence 1 111110 111246999998865533 3566789999999
Q ss_pred cccCCcEEEE-----Eeeccccc---c-----hHHHHHHHHHHcCCeEEEEEEee
Q 047630 327 VLRPGGLFWL-----DHFFCVGA---Q-----LEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 327 vLKPGG~lii-----~~~~~~~~---~-----l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
+|||||+++- -+|....+ + .-+++..+++..||++++-+.+.
T Consensus 285 iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 285 ILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred hccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 9999999843 33333221 1 15568889999999999887444
No 215
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.85 E-value=0.0053 Score=56.43 Aligned_cols=129 Identities=17% Similarity=0.178 Sum_probs=70.7
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhH----------HHHHhc-C--CccEEEeccCcCCCC
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFN----------NFIASR-G--VVPLYISISQRLPFF 295 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~----------~~aa~r-g--~i~~~~~d~~~Lpf~ 295 (392)
+++++..| +|+=.|.|+|+..++. .+++.+....-. .+.. ..+.+. . .++.+-.....++ +
T Consensus 45 Glkpg~tV---id~~PGgGy~TrI~s~~vgp~G~Vy~~~p-~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~ 119 (238)
T COG4798 45 GLKPGATV---IDLIPGGGYFTRIFSPAVGPKGKVYAYVP-AELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-A 119 (238)
T ss_pred ccCCCCEE---EEEecCCccHhhhhchhcCCceeEEEecc-hhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-C
Confidence 46676666 9999999999999987 344332211211 1110 011111 1 1222222222333 2
Q ss_pred CCcccEEEEccccccc----CCchhHHHHHHHHHHcccCCcEEEEEeecc-cccc----------hHHHHHHHHHHcCCe
Q 047630 296 DNTLDIVHSMHVLSNW----IPTTLLHFLMFDIYRVLRPGGLFWLDHFFC-VGAQ----------LEDVYVPLIESVGFN 360 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~----~~~~~l~~~L~el~RvLKPGG~lii~~~~~-~~~~----------l~~~l~~ll~~aGf~ 360 (392)
....|++......|.+ .......++..++++.|||||.+.+.+... .... ......+..+.+||+
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFk 199 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFK 199 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcce
Confidence 3334555443222211 124556789999999999999997776422 1111 155677889999998
Q ss_pred EEE
Q 047630 361 KLK 363 (392)
Q Consensus 361 ~i~ 363 (392)
..-
T Consensus 200 l~a 202 (238)
T COG4798 200 LEA 202 (238)
T ss_pred eee
Confidence 754
No 216
>PRK00536 speE spermidine synthase; Provisional
Probab=96.84 E-value=0.0087 Score=57.82 Aligned_cols=115 Identities=9% Similarity=0.000 Sum_probs=70.2
Q ss_pred CCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----------cCCccEEEeccCcCCCCCCcccEEE
Q 047630 234 PGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQRLPFFDNTLDIVH 303 (392)
Q Consensus 234 ~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~Lpf~d~sFDlV~ 303 (392)
..+.++||=||.|.|..+..+.+...+|+-+++|. ...+.+.+ ...++++.. .. .-..++||+|+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~--~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVII 144 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE--KILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLII 144 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH--HHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEE
Confidence 35567779999999999999999766788866654 33322221 112333331 11 11246899999
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEe--ecccccchHHHHHHHHHHcCCeEEE
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH--FFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~--~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
.-..+ + +.+.+.++|+|+|||+++... .+-..+.. ..+.+.+++ .|..+.
T Consensus 145 vDs~~-----~---~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~-~~i~~~l~~-~F~~v~ 196 (262)
T PRK00536 145 CLQEP-----D---IHKIDGLKRMLKEDGVFISVAKHPLLEHVSM-QNALKNMGD-FFSIAM 196 (262)
T ss_pred EcCCC-----C---hHHHHHHHHhcCCCcEEEECCCCcccCHHHH-HHHHHHHHh-hCCceE
Confidence 76432 1 247899999999999998864 22222222 334445555 477543
No 217
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0072 Score=62.43 Aligned_cols=99 Identities=18% Similarity=0.267 Sum_probs=74.7
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhcC-----CccEEEeccCcCCCCCCcccEEEEcccccccC
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASRG-----VVPLYISISQRLPFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~rg-----~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~ 312 (392)
++|-+|||.-.+...+-+-|. .++. +|.+....+.+..++ ...+...+...+.|++++||+|+.-..+++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~--iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITN--IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCcee--ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 349999999999999998765 4656 445344444333333 35678889999999999999999999888765
Q ss_pred Cch-------hHHHHHHHHHHcccCCcEEEEEee
Q 047630 313 PTT-------LLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 313 ~~~-------~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
.++ .+...+.++.|+|++||+++...+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 433 234578999999999999876665
No 218
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0092 Score=58.26 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=64.0
Q ss_pred CcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHhc----------CCccEEEeccCcC-CCCCCcccE
Q 047630 235 GTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIASR----------GVVPLYISISQRL-PFFDNTLDI 301 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~r----------g~i~~~~~d~~~L-pf~d~sFDl 301 (392)
++.+.||-||.|.|..+..+.+.. ..++.+++|. ...+.+.+. ..++++.+|...+ .-..++||+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~--~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP--AVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH--HHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 344677999999999999999976 4566655543 333322221 1245666664433 223348999
Q ss_pred EEEcccccccCCchh--HHHHHHHHHHcccCCcEEEEE
Q 047630 302 VHSMHVLSNWIPTTL--LHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 302 V~s~~~l~~~~~~~~--l~~~L~el~RvLKPGG~lii~ 337 (392)
|+.-..=. ..+-+. -..+++.++|+|+++|+++..
T Consensus 153 Ii~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99753321 111011 146999999999999999888
No 219
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.65 E-value=0.0037 Score=57.15 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=61.6
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC---CccEEEeccCc-C---CCCCCccc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG---VVPLYISISQR-L---PFFDNTLD 300 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~~~-L---pf~d~sFD 300 (392)
.+..+ ||+-||+|.++....++|+ .|+.++.|. .... ++..-+ .+.++..|+.. + .-....||
T Consensus 42 ~g~~v---LDLFaGSGalGlEALSRGA~~v~fVE~~~--~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARV---LDLFAGSGALGLEALSRGAKSVVFVEKNR--KAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EE---EETT-TTSHHHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeE---EEcCCccCccHHHHHhcCCCeEEEEECCH--HHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCce
Confidence 44555 9999999999999999985 677755443 2222 222223 24556666332 2 12468899
Q ss_pred EEEEcccccccCCchhHHHHHHHHH--HcccCCcEEEEEeecc
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIY--RVLRPGGLFWLDHFFC 341 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~--RvLKPGG~lii~~~~~ 341 (392)
+|+.--.+... .....++..+. ..|+++|.+++.+...
T Consensus 117 iIflDPPY~~~---~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 IIFLDPPYAKG---LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEE--STTSC---HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEEECCCcccc---hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 99987655332 11356777776 8999999999997554
No 220
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.069 Score=50.65 Aligned_cols=123 Identities=16% Similarity=0.203 Sum_probs=73.8
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcCCC--CCCcccEEEEcccccccCCch
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPF--FDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf--~d~sFDlV~s~~~l~~~~~~~ 315 (392)
++||+|.-||.|+..+.++|+ .|+++|+-.+.-........+.+.+...++..+.- ..+..|+++|--++..
T Consensus 82 v~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFIS----- 156 (245)
T COG1189 82 VVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFIS----- 156 (245)
T ss_pred EEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehhh-----
Confidence 359999999999999999975 58885544322111111111112222223333311 1236789998877754
Q ss_pred hHHHHHHHHHHcccCCcEEEEEe--ecc-------c---------ccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 316 LLHFLMFDIYRVLRPGGLFWLDH--FFC-------V---------GAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~lii~~--~~~-------~---------~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
+..+|..+..+++++|.++.-. -+. . .......+.+.+++.||........
T Consensus 157 -L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 157 -LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred -HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 3568999999999999875442 110 0 0112445777788889888765533
No 221
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.62 E-value=0.036 Score=52.02 Aligned_cols=121 Identities=19% Similarity=0.153 Sum_probs=77.0
Q ss_pred cEEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHHH----HHhcC--CccEEEeccCcCCCCCCcccEEEEccccc
Q 047630 238 RIGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNNF----IASRG--VVPLYISISQRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~~----aa~rg--~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~ 309 (392)
.+++|||.|.|.-+..|+= ...+++- +|.......+ ..+-+ .+.++++-++.+.-...-||+|.+..+-
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtL--les~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva- 145 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTL--LESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA- 145 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEE--EccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-
Confidence 4559999999997777663 4555666 4443333332 22223 2677777777765321119999986543
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
. +..++.=+...+|+||.++...+....++..+ .+......|+...+.....
T Consensus 146 ~------L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e-~~~a~~~~~~~~~~~~~~~ 197 (215)
T COG0357 146 S------LNVLLELCLPLLKVGGGFLAYKGLAGKDELPE-AEKAILPLGGQVEKVFSLT 197 (215)
T ss_pred c------hHHHHHHHHHhcccCCcchhhhHHhhhhhHHH-HHHHHHhhcCcEEEEEEee
Confidence 2 23466777889999999877666555555544 6667777778777665443
No 222
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.57 E-value=0.056 Score=51.68 Aligned_cols=126 Identities=16% Similarity=0.093 Sum_probs=74.6
Q ss_pred cccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh----------cCCccEEEeccCcC-CCCCC-cccE
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS----------RGVVPLYISISQRL-PFFDN-TLDI 301 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~----------rg~i~~~~~d~~~L-pf~d~-sFDl 301 (392)
+.+.||=||.|.|..+..+.+.. ..++.+++|. ...+.+.+ ...++++.+|...+ .-..+ +||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~--~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP--EVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H--HHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh--HHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 44556999999999999999865 4677756554 33332211 12467888885443 22233 8999
Q ss_pred EEEcccccccCCch--hHHHHHHHHHHcccCCcEEEEEee-cccccchHHHHHHHHHHcCCeEEEEE
Q 047630 302 VHSMHVLSNWIPTT--LLHFLMFDIYRVLRPGGLFWLDHF-FCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 302 V~s~~~l~~~~~~~--~l~~~L~el~RvLKPGG~lii~~~-~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
|+.-..- ...+.. --..+++.+.+.|+|||++++..- ..........+.+.+++... .+...
T Consensus 154 Ii~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~ 218 (246)
T PF01564_consen 154 IIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPY 218 (246)
T ss_dssp EEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEE
T ss_pred EEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC-ceEEE
Confidence 9974332 111111 124689999999999999987652 11122333446666777744 44433
No 223
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.49 E-value=0.058 Score=54.33 Aligned_cols=148 Identities=16% Similarity=0.092 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcC--CccEEEeccCcCC-
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRG--VVPLYISISQRLP- 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg--~i~~~~~d~~~Lp- 293 (392)
.+.+++.++++.+...- .+||+-||.|.++..|++....|+|++++. ...+ .+..++ .++|+.++++++.
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~--~av~~A~~Na~~N~i~n~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVE--EAVEDARENAKLNGIDNVEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-H--HHHHHHHHHHHHTT--SEEEEE--SHHCCC
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCH--HHHHHHHHHHHHcCCCcceEEEeeccchhH
Confidence 56677777765543221 359999999999999999999999966443 3322 333444 2677776554331
Q ss_pred ---------------CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC
Q 047630 294 ---------------FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 294 ---------------f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG 358 (392)
.....+|+|+.--.-... + +.++..+.+ +.=+++++ |....+...+..+ .+ |
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~-~----~~~~~~~~~---~~~ivYvS---CnP~tlaRDl~~L-~~-~ 325 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL-D----EKVIELIKK---LKRIVYVS---CNPATLARDLKIL-KE-G 325 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE---TT-S-C----HHHHHHHHH---SSEEEEEE---S-HHHHHHHHHHH-HC-C
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc-h----HHHHHHHhc---CCeEEEEE---CCHHHHHHHHHHH-hh-c
Confidence 123368888764332221 1 123343332 33344444 4444455556544 43 8
Q ss_pred CeEEEEEEeeccCCCCcccceeeEEEEEc
Q 047630 359 FNKLKWVVGRKLDRGPELREMYLSALLEK 387 (392)
Q Consensus 359 f~~i~w~~~~k~d~~~~~~e~ylsai~~K 387 (392)
|+..+.....-.-.+ ..-|. .++++|
T Consensus 326 y~~~~v~~~DmFP~T-~HvE~--v~lL~r 351 (352)
T PF05958_consen 326 YKLEKVQPVDMFPQT-HHVET--VALLER 351 (352)
T ss_dssp EEEEEEEEE-SSTTS-S--EE--EEEEEE
T ss_pred CEEEEEEEeecCCCC-CcEEE--EEEEEe
Confidence 998877766432221 23343 356665
No 224
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.026 Score=58.36 Aligned_cols=134 Identities=15% Similarity=0.143 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH--HHHhcCC--ccEEEeccCcCCCC-
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN--FIASRGV--VPLYISISQRLPFF- 295 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~--~aa~rg~--i~~~~~d~~~Lpf~- 295 (392)
.+.+++.+++......-..+||+=||.|.|+..|+++...|+|++++..+...+ +++.++. +.|..++++++.-.
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc
Confidence 555666665543322222349999999999999999999999966554222221 3334442 67888888776543
Q ss_pred --CCcccEEEEcccccccCCchhHH-HHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 296 --DNTLDIVHSMHVLSNWIPTTLLH-FLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 296 --d~sFDlV~s~~~l~~~~~~~~l~-~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
...+|.|+..-.- .++. .+++.+. .++|-.+++++ |....+...+. .+.+.||++.+..
T Consensus 358 ~~~~~~d~VvvDPPR------~G~~~~~lk~l~-~~~p~~IvYVS---CNP~TlaRDl~-~L~~~gy~i~~v~ 419 (432)
T COG2265 358 WEGYKPDVVVVDPPR------AGADREVLKQLA-KLKPKRIVYVS---CNPATLARDLA-ILASTGYEIERVQ 419 (432)
T ss_pred cccCCCCEEEECCCC------CCCCHHHHHHHH-hcCCCcEEEEe---CCHHHHHHHHH-HHHhCCeEEEEEE
Confidence 3578999865333 2222 3555555 45777788777 33334444344 4566677754443
No 225
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.40 E-value=0.02 Score=55.35 Aligned_cols=105 Identities=18% Similarity=0.090 Sum_probs=57.8
Q ss_pred cccEEEEEcCCcch--HHHHHHH---cCCEEEEEecCCCchhHH--HH--Hhc--CCccEEEeccCcCC------CCCCc
Q 047630 236 TIRIGLDIGGGVAT--FAVRMME---RNITIVTTSMNLNGPFNN--FI--ASR--GVVPLYISISQRLP------FFDNT 298 (392)
Q Consensus 236 ~ir~VLDIGCGtG~--~a~~La~---~g~~vvg~~iD~~a~~~~--~a--a~r--g~i~~~~~d~~~Lp------f~d~s 298 (392)
.|+..||||||-=. .....++ ....|+.+|.|+ .... .+ ... |...++.+|..+.. --.+.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DP--vv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDP--VVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSH--HHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCc--hHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 67888999999643 4455554 577888877654 2222 22 222 22567788755421 11122
Q ss_pred cc-----EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 299 LD-----IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 299 FD-----lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
+| .|+...++|++.+.++...+++.+...|-||.+|.|++....
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 33 567778888877778889999999999999999999998654
No 226
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.0006 Score=60.30 Aligned_cols=56 Identities=29% Similarity=0.327 Sum_probs=45.6
Q ss_pred ccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 282 VPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 282 i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+.+++......+|.+++.|+|.+.+++.|+.-++. ..++++++|+|||||+|-+..
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEEc
Confidence 34444455667899999999999999999766555 589999999999999996663
No 227
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.31 E-value=0.11 Score=48.43 Aligned_cols=116 Identities=12% Similarity=0.043 Sum_probs=71.9
Q ss_pred EEEEcCCcchHHHHHHHcCC--EEEEEecCCCchhHH----HHHhcC---CccEEEecc-CcCCCCCCcccEEEEccccc
Q 047630 240 GLDIGGGVATFAVRMMERNI--TIVTTSMNLNGPFNN----FIASRG---VVPLYISIS-QRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~--~vvg~~iD~~a~~~~----~aa~rg---~i~~~~~d~-~~Lpf~d~sFDlV~s~~~l~ 309 (392)
|.||||--|++..+|.+.|. .++++|++. ...+ .+.+.+ .+.+..+|. ..++- .+..|.|+.+..--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~--gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINP--GPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSH--HHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecCCH
Confidence 48999999999999999887 456644443 2222 333444 377888884 44432 22368887665421
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
..+..+|.+....++..-.|++..... ...+++++.+.||..+.-..+.
T Consensus 78 -----~lI~~ILe~~~~~~~~~~~lILqP~~~-----~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 78 -----ELIIEILEAGPEKLSSAKRLILQPNTH-----AYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp -----HHHHHHHHHTGGGGTT--EEEEEESS------HHHHHHHHHHTTEEEEEEEEEE
T ss_pred -----HHHHHHHHhhHHHhccCCeEEEeCCCC-----hHHHHHHHHHCCCEEEEeEEEe
Confidence 334567777777777766777764322 3558999999999999888775
No 228
>PRK13699 putative methylase; Provisional
Probab=96.28 E-value=0.016 Score=54.75 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=52.7
Q ss_pred cEEEeccCcC--CCCCCcccEEEEccccc----ccCC--------chhHHHHHHHHHHcccCCcEEEEEeecccccchHH
Q 047630 283 PLYISISQRL--PFFDNTLDIVHSMHVLS----NWIP--------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLED 348 (392)
Q Consensus 283 ~~~~~d~~~L--pf~d~sFDlV~s~~~l~----~~~~--------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~ 348 (392)
.++++|+.++ .++++++|+|++.-... .... .+-.+.++.|++|+|||||.+++.... ... .
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~---~~~-~ 78 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW---NRV-D 78 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc---ccH-H
Confidence 4566775543 56789999999874331 0000 122457899999999999998763211 112 2
Q ss_pred HHHHHHHHcCCeEEEEEEeecc
Q 047630 349 VYVPLIESVGFNKLKWVVGRKL 370 (392)
Q Consensus 349 ~l~~ll~~aGf~~i~w~~~~k~ 370 (392)
.+...++++||....+-+-.|.
T Consensus 79 ~~~~al~~~GF~l~~~IiW~K~ 100 (227)
T PRK13699 79 RFMAAWKNAGFSVVGHLVFTKN 100 (227)
T ss_pred HHHHHHHHCCCEEeeEEEEECC
Confidence 3666789999976554444443
No 229
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.23 E-value=0.029 Score=61.62 Aligned_cols=98 Identities=15% Similarity=-0.008 Sum_probs=61.4
Q ss_pred EEEEEcCCcchHHHHHHHc--------------------------------------------CCEEEEEecCCCchhHH
Q 047630 239 IGLDIGGGVATFAVRMMER--------------------------------------------NITIVTTSMNLNGPFNN 274 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--------------------------------------------g~~vvg~~iD~~a~~~~ 274 (392)
.++|-+||+|++.+..+.. ...++|+|+|. ....
T Consensus 193 ~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~--~av~ 270 (702)
T PRK11783 193 PLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDP--RVIQ 270 (702)
T ss_pred eEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCH--HHHH
Confidence 3599999999988766541 12567755554 3332
Q ss_pred ----HHHhcCC---ccEEEeccCcCCCC--CCcccEEEEcccccc-cCCchhHHHHHHHHHHccc---CCcEEEEEe
Q 047630 275 ----FIASRGV---VPLYISISQRLPFF--DNTLDIVHSMHVLSN-WIPTTLLHFLMFDIYRVLR---PGGLFWLDH 338 (392)
Q Consensus 275 ----~aa~rg~---i~~~~~d~~~Lpf~--d~sFDlV~s~~~l~~-~~~~~~l~~~L~el~RvLK---PGG~lii~~ 338 (392)
++...|+ +.+.++|+.+++.+ .++||+|+++-.+.. +....+++.+..++.+.+| +|+.+++..
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 3333443 67888998887654 357999999965532 2233445555555555554 888886553
No 230
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.22 E-value=0.01 Score=57.08 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=64.7
Q ss_pred cccceeccCCCCcHHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHh----cCCcc
Q 047630 208 EKIRWTQKKGNGGLDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIAS----RGVVP 283 (392)
Q Consensus 208 e~~~w~~~~~~~~~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~----rg~i~ 283 (392)
-+++|+.... -++.+++ .+.+.++..| ||||.|.|.++..|.+.+..+++++.| ........+ .+.+.
T Consensus 8 ~gQnFL~~~~--~~~~Iv~-~~~~~~~~~V---lEiGpG~G~lT~~L~~~~~~v~~vE~d--~~~~~~L~~~~~~~~~~~ 79 (262)
T PF00398_consen 8 LGQNFLVDPN--IADKIVD-ALDLSEGDTV---LEIGPGPGALTRELLKRGKRVIAVEID--PDLAKHLKERFASNPNVE 79 (262)
T ss_dssp CTSSEEEHHH--HHHHHHH-HHTCGTTSEE---EEESSTTSCCHHHHHHHSSEEEEEESS--HHHHHHHHHHCTTCSSEE
T ss_pred CCcCeeCCHH--HHHHHHH-hcCCCCCCEE---EEeCCCCccchhhHhcccCcceeecCc--HhHHHHHHHHhhhcccce
Confidence 3466765322 1222332 2333344445 999999999999999999889995554 455554444 24578
Q ss_pred EEEeccCcCCCCC---CcccEEEEcccccccCCchhHHHHHHHHHH
Q 047630 284 LYISISQRLPFFD---NTLDIVHSMHVLSNWIPTTLLHFLMFDIYR 326 (392)
Q Consensus 284 ~~~~d~~~Lpf~d---~sFDlV~s~~~l~~~~~~~~l~~~L~el~R 326 (392)
++.+|+..+..++ +.-..|+++... +. . ..++..+..
T Consensus 80 vi~~D~l~~~~~~~~~~~~~~vv~NlPy-~i---s--~~il~~ll~ 119 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLKNQPLLVVGNLPY-NI---S--SPILRKLLE 119 (262)
T ss_dssp EEES-TTTSCGGGHCSSSEEEEEEEETG-TG---H--HHHHHHHHH
T ss_pred eeecchhccccHHhhcCCceEEEEEecc-cc---h--HHHHHHHhh
Confidence 9999998887655 455677776544 32 1 235555555
No 231
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.07 Score=51.56 Aligned_cols=129 Identities=16% Similarity=0.110 Sum_probs=79.9
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHH----hcC---CccEEEeccCcCCC-
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIA----SRG---VVPLYISISQRLPF- 294 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa----~rg---~i~~~~~d~~~Lpf- 294 (392)
+|-.++++.++..| |+-|.|+|.++.++++ -+++......|+.....+.+. +.+ .+.+.+-|+...-|
T Consensus 96 ~I~~~L~i~PGsvV---~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 96 MILSMLEIRPGSVV---LESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHhcCCCCCEE---EecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 45566778888777 9999999999999988 344444434555444444333 223 36777777665544
Q ss_pred -CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 295 -FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 295 -~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
.+..+|+|+.-.. ..| .++--++.+||.+|.-+.. |-.--+.+. .-.+.+.++||..+...
T Consensus 173 ~ks~~aDaVFLDlP-aPw-------~AiPha~~~lk~~g~r~cs-FSPCIEQvq-rtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 173 IKSLKADAVFLDLP-APW-------EAIPHAAKILKDEGGRLCS-FSPCIEQVQ-RTCEALRSLGFIEIETV 234 (314)
T ss_pred ccccccceEEEcCC-Chh-------hhhhhhHHHhhhcCceEEe-ccHHHHHHH-HHHHHHHhCCCceEEEE
Confidence 3678998886432 233 3567777799988853332 221122222 35567788898776544
No 232
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.17 E-value=0.023 Score=55.63 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=63.9
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH----HHHhcC----CccEEEeccCcC-C--CCCCc
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN----FIASRG----VVPLYISISQRL-P--FFDNT 298 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~----~aa~rg----~i~~~~~d~~~L-p--f~d~s 298 (392)
...+.+| ||+=|=||.|+.+.+..|+ .|+.+| .+....+ +++.++ .++++.+|+... . -..++
T Consensus 121 ~~~gkrv---LnlFsYTGgfsv~Aa~gGA~~v~~VD--~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~ 195 (286)
T PF10672_consen 121 YAKGKRV---LNLFSYTGGFSVAAAAGGAKEVVSVD--SSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGR 195 (286)
T ss_dssp HCTTCEE---EEET-TTTHHHHHHHHTTESEEEEEE--S-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-
T ss_pred HcCCCce---EEecCCCCHHHHHHHHCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCC
Confidence 3455555 9999999999999888886 677744 4334333 333334 256788875432 1 12468
Q ss_pred ccEEEEccc-c--cccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 299 LDIVHSMHV-L--SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 299 FDlV~s~~~-l--~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
||+|++--. + ..+.-..+...++..+.++|+|||.|++..-
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 999998522 1 1111123556788999999999999876653
No 233
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.02 E-value=0.0057 Score=57.01 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=50.3
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHH-cCCE-EEEEecCCCchhHHHHH-----------hcC----CccEEEeccCcC
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMME-RNIT-IVTTSMNLNGPFNNFIA-----------SRG----VVPLYISISQRL 292 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa-----------~rg----~i~~~~~d~~~L 292 (392)
.+.+++.+ +|||||.|......+- .+.. ++|+.+.. .....+. ..| .+.+..+|..+.
T Consensus 39 ~l~~~dvF---~DlGSG~G~~v~~aal~~~~~~~~GIEi~~--~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 39 NLTPDDVF---YDLGSGVGNVVFQAALQTGCKKSVGIEILP--ELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp T--TT-EE---EEES-TTSHHHHHHHHHH--SEEEEEE-SH--HHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred CCCCCCEE---EECCCCCCHHHHHHHHHcCCcEEEEEEech--HHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 45555555 9999999997555543 4544 78855443 2222111 112 144555654433
Q ss_pred CCCC---CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 293 PFFD---NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 293 pf~d---~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
++.. ..-|+|+++..... +.+...|.++..-||+|-+++-..-++
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F~----~~l~~~L~~~~~~lk~G~~IIs~~~~~ 161 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCFD----PDLNLALAELLLELKPGARIISTKPFC 161 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT-----HHHHHHHHHHHTTS-TT-EEEESS-SS
T ss_pred HhHhhhhcCCCEEEEeccccC----HHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence 2211 23599999866422 344556688888999998887655443
No 234
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.99 E-value=0.053 Score=49.71 Aligned_cols=145 Identities=18% Similarity=0.146 Sum_probs=77.0
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHHHHHhcCCccEEEe-ccCcC--------CCCCCcccE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNNFIASRGVVPLYIS-ISQRL--------PFFDNTLDI 301 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~-d~~~L--------pf~d~sFDl 301 (392)
.++..| ||+||..|.++.-..++ ++.....++|+ .. ...-+| +.++.+ |+.+- ..++...|+
T Consensus 68 ~p~~~V---lD~G~APGsWsQVavqr~~p~g~v~gVDl-lh---~~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~r~Vdv 139 (232)
T KOG4589|consen 68 RPEDTV---LDCGAAPGSWSQVAVQRVNPNGMVLGVDL-LH---IEPPEG-ATIIQGNDVTDPETYRKIFEALPNRPVDV 139 (232)
T ss_pred CCCCEE---EEccCCCChHHHHHHHhhCCCceEEEEee-ee---ccCCCC-cccccccccCCHHHHHHHHHhCCCCcccE
Confidence 355556 99999999998877774 45544444665 11 112223 223333 32210 225678999
Q ss_pred EEEcccccc----cCCchhH----HHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCC
Q 047630 302 VHSMHVLSN----WIPTTLL----HFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRG 373 (392)
Q Consensus 302 V~s~~~l~~----~~~~~~l----~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~ 373 (392)
|++-.+-.. ..+.... ..++.-....++|+|.|+.-.+...++.. ++..+.+. |+.++-..-... -
T Consensus 140 VlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~---l~r~l~~~-f~~Vk~vKP~As--r 213 (232)
T KOG4589|consen 140 VLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEAL---LQRRLQAV-FTNVKKVKPDAS--R 213 (232)
T ss_pred EEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHH---HHHHHHHH-hhhcEeeCCccc--c
Confidence 998654321 1111111 12333344677899999988766544332 33334333 666654422211 1
Q ss_pred CcccceeeEEEEEcCCC
Q 047630 374 PELREMYLSALLEKPFL 390 (392)
Q Consensus 374 ~~~~e~ylsai~~Kp~~ 390 (392)
.+..|.|+.+.=.|+-.
T Consensus 214 ~eS~E~y~v~~~~k~~~ 230 (232)
T KOG4589|consen 214 DESAETYLVCLNFKGNV 230 (232)
T ss_pred ccccceeeeeeeccCcC
Confidence 24568888666555543
No 235
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.95 E-value=0.039 Score=58.40 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=15.7
Q ss_pred EEEEEcCCcchHHHHHHH
Q 047630 239 IGLDIGGGVATFAVRMME 256 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~ 256 (392)
+|||.|||+|.+...+++
T Consensus 34 ~ilDP~cGsG~fl~~~~~ 51 (524)
T TIGR02987 34 KIIDPCCGDGRLIAALLK 51 (524)
T ss_pred EEEeCCCCccHHHHHHHH
Confidence 469999999999888876
No 236
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.032 Score=49.16 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=50.2
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHHHHHhcC------CccEEEeccCcCCCCCCcccEEEEc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNNFIASRG------VVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~~aa~rg------~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
.+.++ +|+|||.|.+....+-.+ -.++|+|+|. +..+ +..++ .+.+.+++..++.+..+.||.++.+
T Consensus 48 Egkkl---~DLgcgcGmLs~a~sm~~~e~vlGfDIdp--eALE-If~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 48 EGKKL---KDLGCGCGMLSIAFSMPKNESVLGFDIDP--EALE-IFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred cCcch---hhhcCchhhhHHHhhcCCCceEEeeecCH--HHHH-HHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 45566 999999999886666544 4677866554 3333 33332 2578888988888878999999998
Q ss_pred cccc
Q 047630 306 HVLS 309 (392)
Q Consensus 306 ~~l~ 309 (392)
..+.
T Consensus 122 ppFG 125 (185)
T KOG3420|consen 122 PPFG 125 (185)
T ss_pred CCCC
Confidence 7664
No 237
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.89 E-value=0.014 Score=52.40 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=40.3
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHH----HHhcC---CccEEEeccCcCC--CCCCc-ccEEEEcc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNF----IASRG---VVPLYISISQRLP--FFDNT-LDIVHSMH 306 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~----aa~rg---~i~~~~~d~~~Lp--f~d~s-FDlV~s~~ 306 (392)
+|+|+.||.|..+..+++....|+++|+|. ...+. +.--| .+.++++|..++. +..+. ||+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~--~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDP--ERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-H--HHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 579999999999999999999999966554 44432 22223 3789999865542 12222 89999763
No 238
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.26 Score=45.76 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=78.7
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-cC-CEEEEEecCCCchhHH---HHHhcCCccEEEeccCc---CCCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-RN-ITIVTTSMNLNGPFNN---FIASRGVVPLYISISQR---LPFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~g-~~vvg~~iD~~a~~~~---~aa~rg~i~~~~~d~~~---Lpf~d~sFDlV 302 (392)
+.++.+| |=+|.-+|+...++++ .+ -.++++..+. -++.+ .+.+|..+-=+.+|+.. ..+--+..|+|
T Consensus 74 i~~g~~V---LYLGAasGTTvSHVSDIv~~G~iYaVEfs~-R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 74 IKEGSKV---LYLGAASGTTVSHVSDIVGEGRIYAVEFSP-RPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred cCCCCEE---EEeeccCCCcHhHHHhccCCCcEEEEEecc-hhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEE
Confidence 4456666 9999999999999988 33 3466655444 23332 34445433333445332 12233458888
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec------ccccchHHHHHHHHHHcCCeEEEEEEeecc
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF------CVGAQLEDVYVPLIESVGFNKLKWVVGRKL 370 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~------~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~ 370 (392)
+.- ...+.+.+-+..++..-||+||++++.--. ...++..+.-.+.+++.||+.++-......
T Consensus 150 y~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePy 218 (231)
T COG1889 150 YQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPY 218 (231)
T ss_pred EEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCc
Confidence 763 344566677899999999999987665321 112222333344567778988876644433
No 239
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.75 E-value=0.078 Score=49.68 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCC-----ccEEEeccCcC--CCCCCcccEEEE
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGV-----VPLYISISQRL--PFFDNTLDIVHS 304 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~-----i~~~~~d~~~L--pf~d~sFDlV~s 304 (392)
.++++| |.||-|-|.....+.++.+.-+.+ |+...+..+.+.+.|. +-...+-.++. .++|+.||-|+-
T Consensus 100 tkggrv---LnVGFGMgIidT~iQe~~p~~H~I-iE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRV---LNVGFGMGIIDTFIQEAPPDEHWI-IEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceE---EEeccchHHHHHHHhhcCCcceEE-EecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEe
Confidence 355667 999999999999988865432211 3333455555555542 33333332221 346889999986
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA 344 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~ 344 (392)
--.-.+. +++..+.+.+.|.|||+|+|-+..-.+.++
T Consensus 176 DTy~e~y---Edl~~~hqh~~rLLkP~gv~SyfNg~~~~~ 212 (271)
T KOG1709|consen 176 DTYSELY---EDLRHFHQHVVRLLKPEGVFSYFNGLGADN 212 (271)
T ss_pred echhhHH---HHHHHHHHHHhhhcCCCceEEEecCcccch
Confidence 5332333 677788999999999999996666554433
No 240
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.075 Score=48.77 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=62.5
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHHHHHh----c---CCccEEEeccCcC-CCCCC--cccE
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNNFIAS----R---GVVPLYISISQRL-PFFDN--TLDI 301 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~~aa~----r---g~i~~~~~d~~~L-pf~d~--sFDl 301 (392)
.+.++ ||+=+|+|.++....++|+ .++.++.|. .....+.+ - +...++..|+... +-... .||+
T Consensus 43 ~g~~~---LDlFAGSGaLGlEAlSRGA~~~~~vE~~~--~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 43 EGARV---LDLFAGSGALGLEALSRGAARVVFVEKDR--KAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred CCCEE---EEecCCccHhHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccE
Confidence 34455 9999999999999999986 567755544 22222211 1 2356666665533 22222 4999
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
|+.--.++.-.-+........+-...|+|+|.+++.+-.
T Consensus 118 VflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 118 VFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 998876652111112222233356789999999998643
No 241
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.67 E-value=0.024 Score=55.74 Aligned_cols=67 Identities=13% Similarity=-0.020 Sum_probs=44.5
Q ss_pred EEEEcCCcchHHHHHHHcC---CEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCC--CC--CcccEEEEcccc
Q 047630 240 GLDIGGGVATFAVRMMERN---ITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPF--FD--NTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g---~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf--~d--~sFDlV~s~~~l 308 (392)
+||.+||.|.++..+++.. ..|+|+|.| ..+...+.++ +.+.+++++...+.. .+ .++|.|++....
T Consensus 23 vlD~TlG~GGhS~~il~~~~~~g~VigiD~D--~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 23 YVDGTFGGGGHSRAILERLGPKGRLIAIDRD--PDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred EEEeCcCChHHHHHHHHhCCCCCEEEEEcCC--HHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEECCCc
Confidence 4999999999999999863 578885544 3444433322 246788887665421 12 279999875443
No 242
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.55 E-value=0.006 Score=49.97 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=38.1
Q ss_pred EEEcCCcchHHHHHHH---cC--CEEEEEecCCCchhHH-HHHh---cCCccEEEeccCcC--CCCCCcccEEEEccccc
Q 047630 241 LDIGGGVATFAVRMME---RN--ITIVTTSMNLNGPFNN-FIAS---RGVVPLYISISQRL--PFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 241 LDIGCGtG~~a~~La~---~g--~~vvg~~iD~~a~~~~-~aa~---rg~i~~~~~d~~~L--pf~d~sFDlV~s~~~l~ 309 (392)
||||+..|..+..+++ .+ .+++++|......... .+.+ ...+.++.++..+. .+.+++||+|+.-.. |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 6899999998887776 22 2567755433101222 2222 12477888875432 223578999986542 1
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
..+....-+..+.+.|+|||+++++++
T Consensus 80 ---~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 80 ---SYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred ---CHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 225556778999999999999998863
No 243
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.50 E-value=0.031 Score=56.76 Aligned_cols=90 Identities=8% Similarity=0.039 Sum_probs=60.9
Q ss_pred EEEEcCCcchHHHHHHHc--C-CEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCcCC-CCCCcccEEEEccccc
Q 047630 240 GLDIGGGVATFAVRMMER--N-ITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQRLP-FFDNTLDIVHSMHVLS 309 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g-~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~Lp-f~d~sFDlV~s~~~l~ 309 (392)
|||+.||+|..+.+++.+ | ..|+++|+|. ...+ ++..++. +.++.+|+..+- .....||+|..-- +
T Consensus 48 vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~--~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 48 IADALSASGIRAIRYAHEIEGVREVFANDINP--KAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred EEECCCchhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 499999999999999986 4 4688866554 3333 2333332 456677765442 1235799998744 3
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+ ..++..+.+.+++||++.++.
T Consensus 124 --Gs~---~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 --GTP---APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --CCc---HHHHHHHHHhcccCCEEEEEe
Confidence 122 248899999999999998883
No 244
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.49 E-value=0.37 Score=48.23 Aligned_cols=118 Identities=15% Similarity=0.067 Sum_probs=58.7
Q ss_pred HHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH------------cC------CEEEEEecCCCchhHHH---------
Q 047630 223 FSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME------------RN------ITIVTTSMNLNGPFNNF--------- 275 (392)
Q Consensus 223 ~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~------------~g------~~vvg~~iD~~a~~~~~--------- 275 (392)
..|.++.......+.-+|+|+||..|..+..+.+ .+ ++|+-.|+=. -++...
T Consensus 3 ~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~-NDFn~lF~~l~~~~~ 81 (334)
T PF03492_consen 3 EAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPS-NDFNTLFKSLPSFQQ 81 (334)
T ss_dssp HHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TT-S-HHHHHHCHHHHHH
T ss_pred HHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCC-ccHHHHHHhChhhhh
Confidence 3455555322233333559999999997765543 12 3566655322 344331
Q ss_pred -HHhcCC--ccEEEeccCcCCCCCCcccEEEEcccccccCC------------------------------------chh
Q 047630 276 -IASRGV--VPLYISISQRLPFFDNTLDIVHSMHVLSNWIP------------------------------------TTL 316 (392)
Q Consensus 276 -aa~rg~--i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~------------------------------------~~~ 316 (392)
....+. +..+-++...-=||+++.|++++..++|+... ..+
T Consensus 82 ~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D 161 (334)
T PF03492_consen 82 SLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKD 161 (334)
T ss_dssp HHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHH
T ss_pred ccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHH
Confidence 111121 11222344444578999999999999964321 012
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecc
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+..+|+-=++-|+|||++++.-...
T Consensus 162 ~~~FL~~Ra~ELv~GG~mvl~~~gr 186 (334)
T PF03492_consen 162 FSSFLKARAEELVPGGRMVLTFLGR 186 (334)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEE-
T ss_pred HHHHHHHhhheeccCcEEEEEEeec
Confidence 3334444567789999998887543
No 245
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.25 E-value=0.7 Score=44.82 Aligned_cols=142 Identities=14% Similarity=0.209 Sum_probs=79.4
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC--CCcccEEEEcccccccC-----
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF--DNTLDIVHSMHVLSNWI----- 312 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~--d~sFDlV~s~~~l~~~~----- 312 (392)
|+|+-||.|.+...+.+.|.+++. .+|++....+....+-.-..+.+|+..+... ...+|+++.......+.
T Consensus 3 v~dLFsG~Gg~~~gl~~~G~~~v~-a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~ 81 (275)
T cd00315 3 VIDLFAGIGGFRLGLEKAGFEIVA-ANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGKR 81 (275)
T ss_pred EEEEccCcchHHHHHHHcCCEEEE-EEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhhc
Confidence 599999999999999888887543 2444333333333322113456677666432 35699999875443211
Q ss_pred --CchhHHHHHHHHH---HcccCCcEEEEEeecc----cccchHHHHHHHHHHcCCeEEEEEEeeccCCC--Ccccceee
Q 047630 313 --PTTLLHFLMFDIY---RVLRPGGLFWLDHFFC----VGAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELREMYL 381 (392)
Q Consensus 313 --~~~~l~~~L~el~---RvLKPGG~lii~~~~~----~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e~yl 381 (392)
..+....++.++. +.++|. ++++..... ......+.+.+.+++.||. +.|.+....+.| .....+|+
T Consensus 82 ~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~-~~~~~l~a~~~GvPQ~R~R~~~ 159 (275)
T cd00315 82 KGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYN-VYWKLLNASDYGVPQNRERVFI 159 (275)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcE-EEEEEEEHHHcCCCCCCcEEEE
Confidence 0111122344443 344564 445554322 1123345688889999997 567766655554 34555665
Q ss_pred EEE
Q 047630 382 SAL 384 (392)
Q Consensus 382 sai 384 (392)
.++
T Consensus 160 ia~ 162 (275)
T cd00315 160 IGI 162 (275)
T ss_pred EEE
Confidence 443
No 246
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.18 E-value=0.013 Score=48.99 Aligned_cols=68 Identities=22% Similarity=0.394 Sum_probs=41.0
Q ss_pred cccEEEEccccccc---CCchhHHHHHHHHHHcccCCcEEEEEee----ccccc----ch----------HHHHHHHHHH
Q 047630 298 TLDIVHSMHVLSNW---IPTTLLHFLMFDIYRVLRPGGLFWLDHF----FCVGA----QL----------EDVYVPLIES 356 (392)
Q Consensus 298 sFDlV~s~~~l~~~---~~~~~l~~~L~el~RvLKPGG~lii~~~----~~~~~----~l----------~~~l~~ll~~ 356 (392)
.||+|+|..+.-.+ ..++.+..+++.+++.|+|||+|++..- +.... .. ++.+.+.+.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 48999997665211 2356788999999999999999999852 11111 11 3446666665
Q ss_pred --cCCeEEEEE
Q 047630 357 --VGFNKLKWV 365 (392)
Q Consensus 357 --aGf~~i~w~ 365 (392)
.||+.++-.
T Consensus 81 ~evGF~~~e~~ 91 (110)
T PF06859_consen 81 PEVGFSSVEEL 91 (110)
T ss_dssp TTT---EEEEE
T ss_pred cccceEEEEEc
Confidence 699887633
No 247
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.02 E-value=0.046 Score=50.43 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=55.5
Q ss_pred EEEEEcCCcchHHHHHHHcCC-EEEEEecCCCchhHH-----HHHhcCC-ccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 239 IGLDIGGGVATFAVRMMERNI-TIVTTSMNLNGPFNN-----FIASRGV-VPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~-~vvg~~iD~~a~~~~-----~aa~rg~-i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
+|||+|.|+|..++.-+..|. .|+.+|+|+ ... +++.+|. +.+...|.-. .+..||+|+...++..-
T Consensus 82 rVLd~gagsgLvaIAaa~aGA~~v~a~d~~P---~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 82 RVLDLGAGSGLVAIAAARAGAAEVVAADIDP---WLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYNH 155 (218)
T ss_pred eeeecccccChHHHHHHHhhhHHHHhcCCCh---HHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecCc
Confidence 349999999999988888775 466655553 332 3444442 3444444332 56789999999887542
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWL 336 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii 336 (392)
.....++. +.+.|+..|.-++
T Consensus 156 ---~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 156 ---TEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred ---hHHHHHHH-HHHHHHhCCCEEE
Confidence 33335666 6666666665444
No 248
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.97 E-value=0.15 Score=49.78 Aligned_cols=135 Identities=16% Similarity=0.174 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----HHHhcCC--ccEEEeccCc
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----FIASRGV--VPLYISISQR 291 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----~aa~rg~--i~~~~~d~~~ 291 (392)
...+...++...++..| ||+.+|.|.=+.++++. .-.+++.|++ ..... .+.+-|. +.....|...
T Consensus 73 sS~l~~~~L~~~~~~~V---LD~CAapGgKt~~la~~~~~~g~i~A~D~~--~~Rl~~l~~~~~r~g~~~v~~~~~D~~~ 147 (283)
T PF01189_consen 73 SSQLVALALDPQPGERV---LDMCAAPGGKTTHLAELMGNKGEIVANDIS--PKRLKRLKENLKRLGVFNVIVINADARK 147 (283)
T ss_dssp HHHHHHHHHTTTTTSEE---EESSCTTSHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHHHHHTT-SSEEEEESHHHH
T ss_pred ccccccccccccccccc---cccccCCCCceeeeeecccchhHHHHhccC--HHHHHHHHHHHHhcCCceEEEEeecccc
Confidence 34455556666666666 99999999988888873 3477775543 34443 2333353 3344455544
Q ss_pred C-C-CCCCcccEEEEc------ccccccCC-------ch-------hHHHHHHHHHHcc----cCCcEEEEEeecccccc
Q 047630 292 L-P-FFDNTLDIVHSM------HVLSNWIP-------TT-------LLHFLMFDIYRVL----RPGGLFWLDHFFCVGAQ 345 (392)
Q Consensus 292 L-p-f~d~sFDlV~s~------~~l~~~~~-------~~-------~l~~~L~el~RvL----KPGG~lii~~~~~~~~~ 345 (392)
+ + .....||.|+.- .++.. .+ +. ...++|..+.+.+ ||||+++.+..--..++
T Consensus 148 ~~~~~~~~~fd~VlvDaPCSg~G~i~r-~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 148 LDPKKPESKFDRVLVDAPCSGLGTIRR-NPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEE 226 (283)
T ss_dssp HHHHHHTTTEEEEEEECSCCCGGGTTT-CTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGG
T ss_pred ccccccccccchhhcCCCccchhhhhh-ccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHH
Confidence 4 1 233469999863 11211 11 11 1346899999999 99999999876444455
Q ss_pred hHHHHHHHHHHc-CCeE
Q 047630 346 LEDVYVPLIESV-GFNK 361 (392)
Q Consensus 346 l~~~l~~ll~~a-Gf~~ 361 (392)
-++.+...+++. .|+.
T Consensus 227 NE~vV~~fl~~~~~~~l 243 (283)
T PF01189_consen 227 NEEVVEKFLKRHPDFEL 243 (283)
T ss_dssp THHHHHHHHHHSTSEEE
T ss_pred HHHHHHHHHHhCCCcEE
Confidence 556677777775 3443
No 249
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.89 E-value=0.083 Score=45.91 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=26.6
Q ss_pred CcccEEEEEcCCcchHHHHHHH------cCCEEEEEecCC
Q 047630 235 GTIRIGLDIGGGVATFAVRMME------RNITIVTTSMNL 268 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~a~~La~------~g~~vvg~~iD~ 268 (392)
.....|+|+|||.|+++..|+. .+..|+++|.+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence 4455669999999999999988 467888866554
No 250
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.87 E-value=0.28 Score=49.71 Aligned_cols=97 Identities=12% Similarity=0.006 Sum_probs=61.6
Q ss_pred EEEEcCCcchHHHHHHHcCC-----------------------------------------EEEEEecCCCchhHH----
Q 047630 240 GLDIGGGVATFAVRMMERNI-----------------------------------------TIVTTSMNLNGPFNN---- 274 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~-----------------------------------------~vvg~~iD~~a~~~~---- 274 (392)
++|-=||+|++++..+-.+. ..+|+|+| ....+
T Consensus 195 l~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did--~r~i~~Ak~ 272 (381)
T COG0116 195 LLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDID--PRHIEGAKA 272 (381)
T ss_pred cccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCC--HHHHHHHHH
Confidence 49999999999988776543 25575544 34433
Q ss_pred HHHhcC---CccEEEeccCcCCCCCCcccEEEEccccc-ccCCchhHH----HHHHHHHHcccCCcEEEEEe
Q 047630 275 FIASRG---VVPLYISISQRLPFFDNTLDIVHSMHVLS-NWIPTTLLH----FLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 275 ~aa~rg---~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~-~~~~~~~l~----~~L~el~RvLKPGG~lii~~ 338 (392)
++.+.| .|.|.++|+.+++-+-+.+|+|+|+...- -+..+..++ .+.+.+.+.++--+.+++..
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 233334 38899999998865447899999995542 223333333 33445556666666776664
No 251
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.056 Score=48.49 Aligned_cols=64 Identities=23% Similarity=0.163 Sum_probs=47.8
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
...+||.|+|+.++..- +..+.+++-|.+.|+|.|.-++.... .++-.+.+.+....+||.+..
T Consensus 100 eq~tFDiIlaADClFfd---E~h~sLvdtIk~lL~p~g~Al~fsPR--Rg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFD---EHHESLVDTIKSLLRPSGRALLFSPR--RGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred hhCcccEEEeccchhHH---HHHHHHHHHHHHHhCcccceeEecCc--ccchHHHHHHHHHhceeEEEe
Confidence 45689999999998653 55678999999999999996665432 233344578888889987654
No 252
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.75 E-value=0.054 Score=50.25 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=27.4
Q ss_pred EEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH
Q 047630 241 LDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN 274 (392)
Q Consensus 241 LDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~ 274 (392)
.|||||.|.+...|+...++...+++++....+.
T Consensus 65 aDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsd 98 (249)
T KOG3115|consen 65 ADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSD 98 (249)
T ss_pred EeeccCccchhhhccccCccceeeeehhhHHHHH
Confidence 8999999999999999888766666887544443
No 253
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.66 E-value=0.055 Score=50.81 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=59.7
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----C---CccEEEeccCcC----CCCCCcccEEEEccc
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----G---VVPLYISISQRL----PFFDNTLDIVHSMHV 307 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g---~i~~~~~d~~~L----pf~d~sFDlV~s~~~ 307 (392)
.|+|.-||.|..+..++.+++.|+++|+|+ ....-++.+ | .+.|+++|..++ .+....+|+|..+
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisIdiDP--ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s-- 172 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAIDIDP--VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS-- 172 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEEeccH--HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC--
Confidence 349999999999999999999999977665 333322222 2 278999986543 3433334555543
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEE
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~l 334 (392)
-.|..+..+..-+.++...++|.|.-
T Consensus 173 -ppwggp~y~~~~~~DL~~~~~p~~~~ 198 (263)
T KOG2730|consen 173 -PPWGGPSYLRADVYDLETHLKPMGTK 198 (263)
T ss_pred -CCCCCcchhhhhhhhhhhhcchhHHH
Confidence 35555565556667777777777543
No 254
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.56 E-value=0.4 Score=47.22 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=37.7
Q ss_pred HHHHHHhhCCCC--cccEEEEEcCCcchHHHHHH--HcCCEEEEEecCCCchhHH--HHHhc-C---CccEEEec-cC--
Q 047630 224 SIDEVLATKKPG--TIRIGLDIGGGVATFAVRMM--ERNITIVTTSMNLNGPFNN--FIASR-G---VVPLYISI-SQ-- 290 (392)
Q Consensus 224 lI~~ll~l~~~~--~ir~VLDIGCGtG~~a~~La--~~g~~vvg~~iD~~a~~~~--~aa~r-g---~i~~~~~d-~~-- 290 (392)
+|++++...... ..-.+||||+|...+-..|. ..+...+|+|+|..+-..+ .+.++ + .|.+.... ..
T Consensus 88 ~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i 167 (299)
T PF05971_consen 88 WIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNI 167 (299)
T ss_dssp HHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SS
T ss_pred HHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcccc
Confidence 456666433221 12356999999986433332 2588999988876332222 33333 2 25555432 11
Q ss_pred --cCCCCCCcccEEEEcccccc
Q 047630 291 --RLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 291 --~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.+...++.||+.+|+-.++.
T Consensus 168 ~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 168 FDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp TTTSTT--S-EEEEEE-----S
T ss_pred chhhhcccceeeEEecCCcccc
Confidence 12224568999999987754
No 255
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.38 E-value=0.11 Score=48.28 Aligned_cols=96 Identities=6% Similarity=-0.017 Sum_probs=49.0
Q ss_pred EEEEEcCCcchHHHHHHH------cCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCC--------CCCccc
Q 047630 239 IGLDIGGGVATFAVRMME------RNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPF--------FDNTLD 300 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~------~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf--------~d~sFD 300 (392)
+|+++|.-.|.-+..+|+ ....|+|+|+|+.. ....+.+. ..++++.+|..+... ....-.
T Consensus 35 ~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~-~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~v 113 (206)
T PF04989_consen 35 LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP-HNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHPV 113 (206)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT---S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SSE
T ss_pred eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch-hchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCce
Confidence 349999999886666554 23688998887732 22233333 458999998654321 112223
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+|+- .+-|.. +.+.+.|+-....+++|+++++.+.
T Consensus 114 lVil-Ds~H~~---~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 114 LVIL-DSSHTH---EHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp EEEE-SS-------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred EEEE-CCCccH---HHHHHHHHHhCccCCCCCEEEEEec
Confidence 4432 222221 3444677778999999999998874
No 256
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.25 E-value=0.096 Score=48.11 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=60.4
Q ss_pred EEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcC-------CccEEEeccCcCCCCCCcccEEEEcccccccCC
Q 047630 241 LDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRG-------VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 241 LDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-------~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~ 313 (392)
.|+|.|+|.++...++..-.|+++..| ++....++.+ .++++.+|+.+..| +..|+|+|-..=..++.
T Consensus 37 ~DLGaGsGiLs~~Aa~~A~rViAiE~d---Pk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~ 111 (252)
T COG4076 37 ADLGAGSGILSVVAAHAAERVIAIEKD---PKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALIE 111 (252)
T ss_pred eeccCCcchHHHHHHhhhceEEEEecC---cHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhhc
Confidence 899999999988888877788885544 3444444433 26778899999888 45799998532212222
Q ss_pred chhHHHHHHHHHHcccCCcEEE
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~li 335 (392)
++. -.++..+...||-+|.++
T Consensus 112 E~q-VpV~n~vleFLr~d~tii 132 (252)
T COG4076 112 EKQ-VPVINAVLEFLRYDPTII 132 (252)
T ss_pred ccc-cHHHHHHHHHhhcCCccc
Confidence 222 257777777888888774
No 257
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.79 E-value=0.26 Score=50.21 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=34.1
Q ss_pred cCcCCCCCCcccEEEEcccccccCCc--h----------------------------------hHHHHHHHHHHcccCCc
Q 047630 289 SQRLPFFDNTLDIVHSMHVLSNWIPT--T----------------------------------LLHFLMFDIYRVLRPGG 332 (392)
Q Consensus 289 ~~~Lpf~d~sFDlV~s~~~l~~~~~~--~----------------------------------~l~~~L~el~RvLKPGG 332 (392)
...--||+++.+++|+++++|. ... + ++..+|+-=.+-|+|||
T Consensus 153 FY~RLfP~~Slh~~~Ss~slHW-LS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG 231 (386)
T PLN02668 153 FYRRLFPARSIDVFHSAFSLHW-LSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGG 231 (386)
T ss_pred ccccccCCCceEEEEeecccee-cccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3333478999999999999964 331 0 12334444467789999
Q ss_pred EEEEEee
Q 047630 333 LFWLDHF 339 (392)
Q Consensus 333 ~lii~~~ 339 (392)
.+++.-.
T Consensus 232 ~mvl~~~ 238 (386)
T PLN02668 232 AMFLVCL 238 (386)
T ss_pred EEEEEEe
Confidence 9988854
No 258
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.68 E-value=0.057 Score=56.25 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=44.5
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH--HHHhcC--CccEEEeccCcC
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN--FIASRG--VVPLYISISQRL 292 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~--~aa~rg--~i~~~~~d~~~L 292 (392)
+|.+.+.+..+ ..+||+-||||.++..++++-..|+|+.++.++...+ .+..+| ..+|+++-++++
T Consensus 374 ~i~e~~~l~~~---k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 374 TIGEWAGLPAD---KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHhCCCCC---cEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 44555555544 3459999999999999999888999977665332222 344445 367888855543
No 259
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.59 E-value=1.5 Score=39.48 Aligned_cols=121 Identities=15% Similarity=0.125 Sum_probs=75.8
Q ss_pred EcCCcchHHHHHHHc---CCEEEEEecCCCchhHH----------HHHhcCCccEEEe-ccCcC----CCCCCcccEEEE
Q 047630 243 IGGGVATFAVRMMER---NITIVTTSMNLNGPFNN----------FIASRGVVPLYIS-ISQRL----PFFDNTLDIVHS 304 (392)
Q Consensus 243 IGCGtG~~a~~La~~---g~~vvg~~iD~~a~~~~----------~aa~rg~i~~~~~-d~~~L----pf~d~sFDlV~s 304 (392)
||=|.=+|+..|++. +..++++..|......+ ...+.| +.+..+ |+..+ ....+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEEEE
Confidence 555666788888883 55788877776322221 122233 333333 45544 235688999998
Q ss_pred cccccccC----------CchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 305 MHVLSNWI----------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 305 ~~~l~~~~----------~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
++.-.... .+.-+..+++.+.++|+++|.+.|+......-+.-+ +.++.++.||..++-.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~-i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWN-IEELAAEAGLVLVRKV 151 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCcccc-HHHHHHhcCCEEEEEe
Confidence 87643210 123456789999999999999999975443322112 5678899999887654
No 260
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.36 E-value=0.34 Score=48.56 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=63.8
Q ss_pred hhCCCCcccEEEEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEec-cCcCCCCCCcccEEEEcc
Q 047630 230 ATKKPGTIRIGLDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISI-SQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d-~~~Lpf~d~sFDlV~s~~ 306 (392)
.+.+++++ +=+|+| .|..+..+++ .+.+|++ +|.+....+.+.+-|.-.++.+. .....--.+.||+|+..-
T Consensus 163 ~~~pG~~V---~I~G~GGlGh~avQ~Aka~ga~Via--~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 163 NVKPGKWV---AVVGAGGLGHMAVQYAKAMGAEVIA--ITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCCCCEE---EEECCcHHHHHHHHHHHHcCCeEEE--EeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 35566666 555555 5678999998 7999999 55555677777777754444432 112221123499998765
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
. .+ .+....+.||+||.+++.-..
T Consensus 238 ~-~~---------~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G-PA---------TLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C-hh---------hHHHHHHHHhcCCEEEEECCC
Confidence 5 22 578888999999999887654
No 261
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.07 E-value=0.11 Score=44.55 Aligned_cols=33 Identities=6% Similarity=0.201 Sum_probs=24.7
Q ss_pred EEEEcCCcchHHHHHHHcCCE--EEEEecCCCchhHH
Q 047630 240 GLDIGGGVATFAVRMMERNIT--IVTTSMNLNGPFNN 274 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~--vvg~~iD~~a~~~~ 274 (392)
+||+|||.|.++..+++.+.. +++ ++++....+
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~--~E~~~~~~~ 36 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIA--FEPLPDAYE 36 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEE--EecCHHHHH
Confidence 599999999999999987654 777 555434433
No 262
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.88 E-value=1 Score=44.91 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=85.0
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCC-ccEEEeccCcCCC---CCCcccEEEEcccccccC--
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGV-VPLYISISQRLPF---FDNTLDIVHSMHVLSNWI-- 312 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~-i~~~~~d~~~Lpf---~d~sFDlV~s~~~l~~~~-- 312 (392)
.++|+=||.|.+..-+.+.|.+++. .+|++....+....+.. ..+...|...+.. ....+|+++....-..+.
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~-a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~a 83 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVF-ANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIA 83 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEE-EEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhhc
Confidence 3599999999999999999987654 24443333332222221 3455555554322 111789999865443321
Q ss_pred --------CchhHHHHHHHHHHcccCCcEEEEEeeccc---ccchHHHHHHHHHHcCCeEEEEEEeeccCCC--Ccccce
Q 047630 313 --------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCV---GAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELREM 379 (392)
Q Consensus 313 --------~~~~l~~~L~el~RvLKPGG~lii~~~~~~---~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e~ 379 (392)
++..+-.-+.++...++| -.|++.....- .....+.+.+.|++.||. +.|.+....+-| .....+
T Consensus 84 G~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~-~~~~ilna~dyGvPQ~ReRv 161 (328)
T COG0270 84 GKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG-VEFNILNAADYGVPQSRERV 161 (328)
T ss_pred CcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc-chHheeeHHhcCCCCCccEE
Confidence 112222345566667788 66666654322 233567799999999999 777777655554 345566
Q ss_pred eeEEE
Q 047630 380 YLSAL 384 (392)
Q Consensus 380 ylsai 384 (392)
|+.+.
T Consensus 162 fiig~ 166 (328)
T COG0270 162 FIVGF 166 (328)
T ss_pred EEEEe
Confidence 66543
No 263
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.67 E-value=0.17 Score=50.63 Aligned_cols=115 Identities=17% Similarity=0.090 Sum_probs=61.2
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCE---EEEEecCCCchhHH----HHHhcCC---ccEEEec--cCc
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNIT---IVTTSMNLNGPFNN----FIASRGV---VPLYISI--SQR 291 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~---vvg~~iD~~a~~~~----~aa~rg~---i~~~~~d--~~~ 291 (392)
.++++....++-..+.+||+|.|.|.-+.++-+.-++ ++. +.. .+... .++++-. ..+...+ ..+
T Consensus 101 sL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~i--le~-sp~lrkV~~tl~~nv~t~~td~r~s~vt~dR 177 (484)
T COG5459 101 SLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVI--LEA-SPALRKVGDTLAENVSTEKTDWRASDVTEDR 177 (484)
T ss_pred HHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhh--hcc-CHHHHHHHHHHHhhcccccCCCCCCccchhc
Confidence 3444443344434445599999999877666553222 222 222 22221 1122110 1222222 123
Q ss_pred CCCC-CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 292 LPFF-DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 292 Lpf~-d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
++++ ...|++|+...-+-+...+..+...++.+...+.|||.|+|.+...
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 4442 3356666665555444444445558899999999999999998543
No 264
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.50 E-value=0.18 Score=42.17 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=22.6
Q ss_pred EEEcCCcchHHHHHHHcCCEEEEEe
Q 047630 241 LDIGGGVATFAVRMMERNITIVTTS 265 (392)
Q Consensus 241 LDIGCGtG~~a~~La~~g~~vvg~~ 265 (392)
.|||||.|.+..-|.+.|....|+|
T Consensus 63 VDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 63 VDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred EEccCCchHHHHHHHhCCCCccccc
Confidence 8999999999999999999888843
No 265
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=92.50 E-value=1.1 Score=43.01 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=55.9
Q ss_pred EEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCC-------ccEEEe-----ccCcCCCCCCc-ccEEEE
Q 047630 239 IGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGV-------VPLYIS-----ISQRLPFFDNT-LDIVHS 304 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~-------i~~~~~-----d~~~Lpf~d~s-FDlV~s 304 (392)
.||++|.|+|..+..++. .+..++.+|.-............+. ..+.+. ......+.... ||+|++
T Consensus 89 ~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dlila 168 (248)
T KOG2793|consen 89 NVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILA 168 (248)
T ss_pred eEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEE
Confidence 459999999988887777 5677766443221111122211110 122222 11111122222 999999
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+.++..-...+ .++.-++..|-.+|.+++.....
T Consensus 169 sDvvy~~~~~e---~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 169 SDVVYEEESFE---GLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred eeeeecCCcch---hHHHHHHHHHhcCCeEEEEEecc
Confidence 99986653334 46777777888888665554443
No 266
>PRK11524 putative methyltransferase; Provisional
Probab=92.40 E-value=0.5 Score=46.02 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=49.5
Q ss_pred cEEEeccCcC--CCCCCcccEEEEcccccc----------cCCc---hhHHHHHHHHHHcccCCcEEEEEeecccccchH
Q 047630 283 PLYISISQRL--PFFDNTLDIVHSMHVLSN----------WIPT---TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLE 347 (392)
Q Consensus 283 ~~~~~d~~~L--pf~d~sFDlV~s~~~l~~----------~~~~---~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~ 347 (392)
.++++|+..+ .+++++||+|++.-.+.. +... .-++.++.++.|+|||||.+++.... ..+
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~---~~~- 85 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST---ENM- 85 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc---hhh-
Confidence 4666775553 456889999999744311 0000 12357899999999999999885321 122
Q ss_pred HHHHHHHHHcCCeEEEEEEeec
Q 047630 348 DVYVPLIESVGFNKLKWVVGRK 369 (392)
Q Consensus 348 ~~l~~ll~~aGf~~i~w~~~~k 369 (392)
. +..++.+.||....+-+..+
T Consensus 86 ~-~~~~~~~~~f~~~~~iiW~k 106 (284)
T PRK11524 86 P-FIDLYCRKLFTIKSRIVWSY 106 (284)
T ss_pred h-HHHHHHhcCcceEEEEEEEe
Confidence 1 34455667886544433333
No 267
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.68 E-value=1.6 Score=42.59 Aligned_cols=99 Identities=7% Similarity=0.093 Sum_probs=50.9
Q ss_pred cEEEEEcCCcchH-HHHHHHc---CCEEEEEecCCCchhHH-HHHh-c----CCccEEEeccCcCCCCCCcccEEEEccc
Q 047630 238 RIGLDIGGGVATF-AVRMMER---NITIVTTSMNLNGPFNN-FIAS-R----GVVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 238 r~VLDIGCGtG~~-a~~La~~---g~~vvg~~iD~~a~~~~-~aa~-r----g~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
+.|+=||+|.=-+ +..|++. +..++++|+|..+.... ...+ . ..+.++.+|....+..-..||+|+....
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 4569999997554 4445542 45677766655222221 1112 1 2368888888777655568999987654
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.. .+.+..++++..+.+.++||..+++..
T Consensus 202 Vg--~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 202 VG--MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -S------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred cc--cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 42 233455689999999999999998885
No 268
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=91.64 E-value=1.3 Score=38.80 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=52.5
Q ss_pred ccEEEeccCcCCC--CCCcccEEEEcccccccCC------chhHHHHHHHHHHcccCCcEEEEEeecccccch--HHHHH
Q 047630 282 VPLYISISQRLPF--FDNTLDIVHSMHVLSNWIP------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL--EDVYV 351 (392)
Q Consensus 282 i~~~~~d~~~Lpf--~d~sFDlV~s~~~l~~~~~------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l--~~~l~ 351 (392)
+.++..+=+++.- +++.+|+|+.+...-.-.| .+.....++.+.+.|+|||++.+..+....+-. .+.+.
T Consensus 28 v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~ 107 (140)
T PF06962_consen 28 VTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVE 107 (140)
T ss_dssp EEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHH
T ss_pred EEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHH
Confidence 6667665444432 2358999999866543222 334457899999999999999999887654322 22233
Q ss_pred HH---HHHcCCeEEEEEEeecc
Q 047630 352 PL---IESVGFNKLKWVVGRKL 370 (392)
Q Consensus 352 ~l---l~~aGf~~i~w~~~~k~ 370 (392)
++ +..-.|.++++....+.
T Consensus 108 ~~~~~L~~~~~~V~~~~~~N~~ 129 (140)
T PF06962_consen 108 EFLASLDQKEFNVLKYQFINQK 129 (140)
T ss_dssp HHHHTS-TTTEEEEEEEESS-S
T ss_pred HHHHhCCcceEEEEEEEccCCC
Confidence 34 44456888888877653
No 269
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.63 E-value=1.9 Score=41.83 Aligned_cols=142 Identities=13% Similarity=0.239 Sum_probs=78.7
Q ss_pred EEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC---CCCCcccEEEEccccccc----
Q 047630 239 IGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP---FFDNTLDIVHSMHVLSNW---- 311 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp---f~d~sFDlV~s~~~l~~~---- 311 (392)
+++|+=||.|.+..-|.+.|.+++. .+|++....+....+-. ....+|+..+. ++. .+|+++....-..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~-a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag 78 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVW-AVEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAG 78 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEE-EEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEEE-EeecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCCceEeccc
Confidence 3599999999999999999976543 24443333332222212 66777777664 343 59999976443322
Q ss_pred -----CCch-hHHHHHHHHHHcccCCcEEEEEeecc---c-ccchHHHHHHHHHHcCCeEEEEEEeeccCCC--Ccccce
Q 047630 312 -----IPTT-LLHFLMFDIYRVLRPGGLFWLDHFFC---V-GAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELREM 379 (392)
Q Consensus 312 -----~~~~-~l~~~L~el~RvLKPGG~lii~~~~~---~-~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e~ 379 (392)
.++. .+-.-+-++.+.++|. +|++..... . .....+.+.+.+++.||. +.|.+....+.| .....+
T Consensus 79 ~~~~~~d~r~~L~~~~~~~v~~~~Pk-~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~-v~~~vlna~~yGvPQ~R~R~ 156 (335)
T PF00145_consen 79 KRKGFDDPRNSLFFEFLRIVKELKPK-YFLLENVPGLLSSKNGEVFKEILEELEELGYN-VQWRVLNAADYGVPQNRERV 156 (335)
T ss_dssp THHCCCCHTTSHHHHHHHHHHHHS-S-EEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEE-EEEEEEEGGGGTSSBE-EEE
T ss_pred cccccccccchhhHHHHHHHhhccce-EEEecccceeecccccccccccccccccccee-ehhccccHhhCCCCCceeeE
Confidence 1111 1222334444556784 455565432 1 223356688889999986 568877766664 344556
Q ss_pred eeEEEE
Q 047630 380 YLSALL 385 (392)
Q Consensus 380 ylsai~ 385 (392)
|+.++.
T Consensus 157 fivg~r 162 (335)
T PF00145_consen 157 FIVGIR 162 (335)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 664433
No 270
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=91.46 E-value=1.2 Score=44.99 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=76.9
Q ss_pred cccEEEEEcCCcchHHHHHHHcC--CEEEEEecCCCchhHHHHHh--------cC-----CccEEEeccCcC-CCCCCcc
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNLNGPFNNFIAS--------RG-----VVPLYISISQRL-PFFDNTL 299 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~--------rg-----~i~~~~~d~~~L-pf~d~sF 299 (392)
..+.||-+|.|.|.-+..+.+.. -+++-+|+|+ .+.+.+.+ .| .+.++..|+..+ .-..+.|
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP--~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDP--RMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCH--HHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 44667999999999999999842 3566655554 44432221 11 145566664432 3345689
Q ss_pred cEEEEcccccc--cCCchhHHHHHHHHHHcccCCcEEEEEee--cccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 300 DIVHSMHVLSN--WIPTTLLHFLMFDIYRVLRPGGLFWLDHF--FCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 300 DlV~s~~~l~~--~~~~~~l~~~L~el~RvLKPGG~lii~~~--~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
|.|+.-..=-. ...+---.++..-+.|.|+++|.+++..- +...+-.- .+...++++||...-..+.-
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw-~i~aTik~AG~~~~Pyhv~V 438 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFW-RIDATIKSAGYRVWPYHVHV 438 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceee-eehhHHHhCcceeeeeEEec
Confidence 99986421000 00001123567788899999999988752 11111111 14557899999887766543
No 271
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.02 E-value=7 Score=38.67 Aligned_cols=142 Identities=14% Similarity=0.166 Sum_probs=77.8
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCC-CCcccEEEEcccccccC------
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFF-DNTLDIVHSMHVLSNWI------ 312 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~-d~sFDlV~s~~~l~~~~------ 312 (392)
|+|+-||.|.+..-+.+.|.+++. .+|++....+....+---.++.+|+..+... -..+|+++....-..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~-a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~~ 79 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVF-ASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKRK 79 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEE-EEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhcccC
Confidence 489999999999999999988654 2344223333222221113455676665421 12489998764332221
Q ss_pred -CchhHHHHHHHHHHcc---cCCcEEEEEeecc----cccchHHHHHHHHHHcCCeEEEEEEeeccCCC--CcccceeeE
Q 047630 313 -PTTLLHFLMFDIYRVL---RPGGLFWLDHFFC----VGAQLEDVYVPLIESVGFNKLKWVVGRKLDRG--PELREMYLS 382 (392)
Q Consensus 313 -~~~~l~~~L~el~RvL---KPGG~lii~~~~~----~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~--~~~~e~yls 382 (392)
..+....++.++.|++ +|. .+++..... ......+.+...+++.||.. .|.+....+.| .....+|+.
T Consensus 80 ~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v-~~~~l~a~dyGvPQ~R~R~f~i 157 (315)
T TIGR00675 80 GFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKV-YYKVLNAKDFGVPQNRERIYIV 157 (315)
T ss_pred CCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEE-EEEEEcHHHCCCCCCccEEEEE
Confidence 0111223455555544 664 445554321 12233455788889999965 56666655554 345566664
Q ss_pred EE
Q 047630 383 AL 384 (392)
Q Consensus 383 ai 384 (392)
++
T Consensus 158 a~ 159 (315)
T TIGR00675 158 GF 159 (315)
T ss_pred EE
Confidence 43
No 272
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=89.97 E-value=1.9 Score=41.73 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=56.0
Q ss_pred hCCCCcccEEEEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC------CCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL------PFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L------pf~d~sFDlV 302 (392)
+.++.++ |..|+| .|..+..+++ .|..+++++ .+....+.+.+.|. ..+....+.. ....+.+|+|
T Consensus 163 ~~~~~~v---li~g~g~vG~~~~~la~~~G~~V~~~~--~s~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 163 VKPGETV---LVIGLGGLGLNAVQIAKAMGAAVIAVD--IKEEKLELAKELGA-DEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCCEE---EEECCcHHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHHhCC-CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 4455555 777876 4777777777 688877743 33444455555553 3333321111 1234568988
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+..... ...+.++.+.|+++|.++...
T Consensus 237 id~~g~---------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 237 FDFVGT---------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EECCCC---------HHHHHHHHHHhhcCCEEEEEC
Confidence 754321 136788999999999997653
No 273
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.88 E-value=17 Score=34.33 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=82.4
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCE--EEEEecCCCchhHH--HHHhcCC---ccEEEeccCcCCC-C
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNIT--IVTTSMNLNGPFNN--FIASRGV---VPLYISISQRLPF-F 295 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~--vvg~~iD~~a~~~~--~aa~rg~---i~~~~~d~~~Lpf-~ 295 (392)
.+..+..+.+.+.. +.||||--|++..+|.+.+.. +++.++..++-.++ ...+.++ +....+|... ++ .
T Consensus 6 RL~~va~~V~~~~~--iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~ 82 (226)
T COG2384 6 RLTTVANLVKQGAR--IADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLEL 82 (226)
T ss_pred HHHHHHHHHHcCCc--eeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCc
Confidence 34445544433221 499999999999999997654 55544444222221 3334444 3444555422 23 3
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCCc
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGPE 375 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~ 375 (392)
+..+|+|+....-- ..+..+|.+-.+.|+-=-+|++. +... ...+++++...+|..+.-.... +
T Consensus 83 ~d~~d~ivIAGMGG-----~lI~~ILee~~~~l~~~~rlILQ----Pn~~-~~~LR~~L~~~~~~I~~E~ile------E 146 (226)
T COG2384 83 EDEIDVIVIAGMGG-----TLIREILEEGKEKLKGVERLILQ----PNIH-TYELREWLSANSYEIKAETILE------E 146 (226)
T ss_pred cCCcCEEEEeCCcH-----HHHHHHHHHhhhhhcCcceEEEC----CCCC-HHHHHHHHHhCCceeeeeeeec------c
Confidence 44789888765321 23445677777766643344443 2222 3458999999999887766553 2
Q ss_pred ccceeeEEEEEc
Q 047630 376 LREMYLSALLEK 387 (392)
Q Consensus 376 ~~e~ylsai~~K 387 (392)
.+..|-..+.+|
T Consensus 147 ~~kiYEIlv~e~ 158 (226)
T COG2384 147 DGKIYEILVVEK 158 (226)
T ss_pred cCeEEEEEEEec
Confidence 344554455555
No 274
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=89.86 E-value=1.6 Score=44.00 Aligned_cols=133 Identities=16% Similarity=0.092 Sum_probs=74.1
Q ss_pred HhhCCCCcccEEEEEcCCcchHHHHHHHcCC------EEEEEecCCCchhHH---HHHhcC-C--ccEEEeccCcC----
Q 047630 229 LATKKPGTIRIGLDIGGGVATFAVRMMERNI------TIVTTSMNLNGPFNN---FIASRG-V--VPLYISISQRL---- 292 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGtG~~a~~La~~g~------~vvg~~iD~~a~~~~---~aa~rg-~--i~~~~~d~~~L---- 292 (392)
+++.++.+| ||+.+-.|.=++.|.+... .+++-|+|. .... ...++- . +.+...++..+
T Consensus 151 L~v~p~~~V---LDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~--~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 151 LGVKPGDKV---LDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDP--KRLNMLVHQLKRLPSPNLLVTNHDASLFPNIY 225 (375)
T ss_pred cccCCCCee---eeeccCCCccHHHHHHHHhcCCCCCeeEecccCH--HHHHHHHHHHhccCCcceeeecccceeccccc
Confidence 456777777 9999999998888877322 566655443 2222 111221 1 11111122211
Q ss_pred -----CCCCCcccEEEEcccc------cc--------cCCc------hhHHHHHHHHHHcccCCcEEEEEeecccccchH
Q 047630 293 -----PFFDNTLDIVHSMHVL------SN--------WIPT------TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLE 347 (392)
Q Consensus 293 -----pf~d~sFDlV~s~~~l------~~--------~~~~------~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~ 347 (392)
+.....||-|++--.- .+ |... .-.-.+|..-.|.||+||.++.+..--...+-+
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNE 305 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENE 305 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhH
Confidence 2234568988863111 00 1110 112357888899999999999997544333445
Q ss_pred HHHHHHHHHcCCeEEEEEEe
Q 047630 348 DVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 348 ~~l~~ll~~aGf~~i~w~~~ 367 (392)
....+++++.| ..+.|..+
T Consensus 306 aVV~~~L~~~~-~~~~lv~~ 324 (375)
T KOG2198|consen 306 AVVQEALQKVG-GAVELVDV 324 (375)
T ss_pred HHHHHHHHHhc-Ccccceee
Confidence 56777777775 44444433
No 275
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=89.48 E-value=4.1 Score=41.91 Aligned_cols=123 Identities=16% Similarity=0.134 Sum_probs=71.5
Q ss_pred HHhhCCCCcccEEEEEcCCcchHHHHHHH----cCCEEEEEecCCCchhHH----HHHhcCCccEE--EeccCcCC---C
Q 047630 228 VLATKKPGTIRIGLDIGGGVATFAVRMME----RNITIVTTSMNLNGPFNN----FIASRGVVPLY--ISISQRLP---F 294 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGtG~~a~~La~----~g~~vvg~~iD~~a~~~~----~aa~rg~i~~~--~~d~~~Lp---f 294 (392)
++...++.+| ||+.+-.|.=+.++|. .| .+++ .|.+..... .+.+-|.-..+ ..|...+| |
T Consensus 236 aL~Pq~gERI---lDmcAAPGGKTt~IAalMkn~G-~I~A--nD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~ 309 (460)
T KOG1122|consen 236 ALDPQPGERI---LDMCAAPGGKTTHIAALMKNTG-VIFA--NDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF 309 (460)
T ss_pred ecCCCCCCee---cchhcCCCchHHHHHHHHcCCc-eEEe--cccchHHHHHHHHHHHHhCCCceEEEccCccccccccc
Confidence 3445566677 9999999975555554 33 3445 444333332 33444533333 33554443 3
Q ss_pred CCCcccEEEE----cc--cccc------cCC-------chhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHH
Q 047630 295 FDNTLDIVHS----MH--VLSN------WIP-------TTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIE 355 (392)
Q Consensus 295 ~d~sFDlV~s----~~--~l~~------~~~-------~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~ 355 (392)
+. +||-|+. +. ++.. +.. ..-.+++|..+...+|+||+|+.+..--..++-+..+...++
T Consensus 310 ~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~ 388 (460)
T KOG1122|consen 310 PG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALK 388 (460)
T ss_pred Cc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHH
Confidence 34 8999984 32 2210 000 011346888889999999999999866555555566666777
Q ss_pred Hc
Q 047630 356 SV 357 (392)
Q Consensus 356 ~a 357 (392)
+.
T Consensus 389 K~ 390 (460)
T KOG1122|consen 389 KR 390 (460)
T ss_pred hC
Confidence 73
No 276
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=89.44 E-value=0.32 Score=43.63 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=36.5
Q ss_pred CCCcccEEEEcccccccC--------CchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 295 FDNTLDIVHSMHVLSNWI--------PTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~--------~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
..++||.+.|..++.|.. ++..-...+.++.++|||||.|++......
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 356899999998887642 233334688999999999999999876543
No 277
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=87.17 E-value=3.9 Score=39.17 Aligned_cols=145 Identities=10% Similarity=0.168 Sum_probs=76.5
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-cCCE--EEEEecCCCchh-HHHHHhcC--CccEEEeccCc---CCCCCCcccE
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-RNIT--IVTTSMNLNGPF-NNFIASRG--VVPLYISISQR---LPFFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~--vvg~~iD~~a~~-~~~aa~rg--~i~~~~~d~~~---Lpf~d~sFDl 301 (392)
++++.++ |=+|+++|+.-.+..+ -|++ |+++..+..+-. ...++++. +++++. |+.. .-..-.-.|+
T Consensus 154 ikpGsKV---LYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiE-DArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 154 IKPGSKV---LYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIE-DARHPAKYRMLVGMVDV 229 (317)
T ss_pred ecCCceE---EEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeec-cCCCchheeeeeeeEEE
Confidence 5567777 9999999998877777 3444 445333221111 12444443 345443 3322 1112235666
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec-ccc-----cchHHHHHHHHHHcCCeEEEEEEeeccCCCCc
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF-CVG-----AQLEDVYVPLIESVGFNKLKWVVGRKLDRGPE 375 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~-~~~-----~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~~ 375 (392)
|++-- .+++....+.-++.-.||+||.|+|+--. |.+ +.....-.+.+++--++..+....+..+
T Consensus 230 IFaDv-----aqpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtLEP~e---- 300 (317)
T KOG1596|consen 230 IFADV-----AQPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTLEPFE---- 300 (317)
T ss_pred EeccC-----CCchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheecccccc----
Confidence 66532 33455566788899999999999887532 111 1111112233444345555544443332
Q ss_pred ccceeeEEEEEcC
Q 047630 376 LREMYLSALLEKP 388 (392)
Q Consensus 376 ~~e~ylsai~~Kp 388 (392)
.+..++..+++.|
T Consensus 301 rdha~VvG~Y~~~ 313 (317)
T KOG1596|consen 301 RDHACVVGVYRRP 313 (317)
T ss_pred CCceEEEEEEecC
Confidence 3444445566654
No 278
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=87.01 E-value=2.3 Score=46.42 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=44.6
Q ss_pred EEEeccCc-CCCCCCcccEEEEc-ccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeE
Q 047630 284 LYISISQR-LPFFDNTLDIVHSM-HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 284 ~~~~d~~~-Lpf~d~sFDlV~s~-~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~ 361 (392)
++.+|+.. ++-.+..||+++.- ++... .+.---+.++.+++|.++|||.|.-.. ....++..+.++||++
T Consensus 151 l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np~~W~~~~~~~l~~~~~~~~~~~t~t-------~a~~vr~~l~~~GF~v 222 (662)
T PRK01747 151 LWFGDANELLPQLDARADAWFLDGFAPAK-NPDMWSPNLFNALARLARPGATLATFT-------SAGFVRRGLQEAGFTV 222 (662)
T ss_pred EEecCHHHHHHhccccccEEEeCCCCCcc-ChhhccHHHHHHHHHHhCCCCEEEEee-------hHHHHHHHHHHcCCee
Confidence 34455433 22223568999864 22211 111112579999999999999996442 2344788999999987
Q ss_pred EE
Q 047630 362 LK 363 (392)
Q Consensus 362 i~ 363 (392)
-+
T Consensus 223 ~~ 224 (662)
T PRK01747 223 RK 224 (662)
T ss_pred ee
Confidence 64
No 279
>PRK10742 putative methyltransferase; Provisional
Probab=86.94 E-value=7.4 Score=37.42 Aligned_cols=84 Identities=11% Similarity=-0.027 Sum_probs=52.0
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH---HHHhc------------CCccEEEec
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN---FIASR------------GVVPLYISI 288 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~---~aa~r------------g~i~~~~~d 288 (392)
.+.+..++.++.. .+|||+=+|+|..+..++.+|..|++++-+. .... ...++ ..+.++.+|
T Consensus 77 ~l~kAvglk~g~~-p~VLD~TAGlG~Da~~las~G~~V~~vEr~p--~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 77 AVAKAVGIKGDYL-PDVVDATAGLGRDAFVLASVGCRVRMLERNP--VVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHHhCCCCCCC-CEEEECCCCccHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 3444555666553 2459999999999999999999998855332 2222 11111 114555666
Q ss_pred cCcC-CCCCCcccEEEEcccccc
Q 047630 289 SQRL-PFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 289 ~~~L-pf~d~sFDlV~s~~~l~~ 310 (392)
...+ .-...+||+|+.--.+.+
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 4332 212347999998776655
No 280
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=86.87 E-value=3.5 Score=41.51 Aligned_cols=105 Identities=13% Similarity=-0.012 Sum_probs=58.1
Q ss_pred HhhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCc-----C-CC-CCCc
Q 047630 229 LATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQR-----L-PF-FDNT 298 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~-----L-pf-~d~s 298 (392)
..+.++..+ |.+|||. |..+..+++ .|. .++++ +.+....+.+.+.+...++.....+ + .+ ....
T Consensus 180 ~~~~~g~~V---lV~g~G~vG~~~~~la~~~g~~~vi~~--~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 180 AEVKPGDTV---AVWGCGPVGLFAARSAKLLGAERVIAI--DRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred ccCCCCCEE---EEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCC
Confidence 334454455 9999988 888888887 565 47664 3434444455555222322211110 1 11 2336
Q ss_pred ccEEEEccccc-------cc-----CCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 299 LDIVHSMHVLS-------NW-----IPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 299 FDlV~s~~~l~-------~~-----~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+|+|+-.-.-. +. .+..+....+.++.+.|+++|.+++..
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 89988743110 00 011111347899999999999997764
No 281
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.03 E-value=1 Score=42.68 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=61.0
Q ss_pred ccEEEEEcCCcchHHHHHHHc--------CC---EEEEEecCCCchhHHHHHhcCCccEEEeccCcC--------CCCCC
Q 047630 237 IRIGLDIGGGVATFAVRMMER--------NI---TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL--------PFFDN 297 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~--------g~---~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L--------pf~d~ 297 (392)
+++|+|+....|.++..|.++ +. .+++ +|+ .++.- -.| +--+++|+... -|..+
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVa--VDL-Q~MaP---I~G-V~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVA--VDL-QPMAP---IEG-VIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEE--Eec-ccCCc---cCc-eEEeecccCCHhHHHHHHHHhCCC
Confidence 555699999999999888772 11 2666 444 22211 122 23344554432 13456
Q ss_pred cccEEEEccccc-----cc---CCchhHHHHHHHHHHcccCCcEEEEEeecccccc
Q 047630 298 TLDIVHSMHVLS-----NW---IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQ 345 (392)
Q Consensus 298 sFDlV~s~~~l~-----~~---~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~ 345 (392)
.-|+|+|-.+.. .+ ...+-+...|.-...+|||||.|+---|......
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~ts 170 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTS 170 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchH
Confidence 889999976542 21 1123344566777899999999987766554433
No 282
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=85.67 E-value=1.7 Score=45.21 Aligned_cols=106 Identities=18% Similarity=0.138 Sum_probs=61.6
Q ss_pred CCCCcccEEEEEcCCcch--HHHHHHHcC--CEEEEEecCCCchhHHHHHh--cC----CccEE---EeccCcCCCC-CC
Q 047630 232 KKPGTIRIGLDIGGGVAT--FAVRMMERN--ITIVTTSMNLNGPFNNFIAS--RG----VVPLY---ISISQRLPFF-DN 297 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~--~a~~La~~g--~~vvg~~iD~~a~~~~~aa~--rg----~i~~~---~~d~~~Lpf~-d~ 297 (392)
.+.-+...++|+|.|.|. .++....++ -.++. +|.+..+...... ++ .-.++ +.--..+|.. .+
T Consensus 196 ~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~--Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~ 273 (491)
T KOG2539|consen 196 SPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSL--VDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKN 273 (491)
T ss_pred CcccChHHHHHHHhhcccchhhhhhhcccccceeEe--eccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCccc
Confidence 344444556899888765 444444443 23333 5664455442221 11 01111 1123345654 44
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHH-cccCCcEEEEEee
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYR-VLRPGGLFWLDHF 339 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~R-vLKPGG~lii~~~ 339 (392)
.||+|++.+.+++.........+.++..| ..++||.+++.+-
T Consensus 274 ~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 274 GYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred ceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 59999999999998777766666666654 5688888877764
No 283
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=85.50 E-value=2.9 Score=44.14 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=69.2
Q ss_pred ccEEEEEcCCcchHHHHHH------HcCCEEEEEecCCCchhHHHHHh----cCCccEEEeccCcCCCCCCcccEEEEcc
Q 047630 237 IRIGLDIGGGVATFAVRMM------ERNITIVTTSMNLNGPFNNFIAS----RGVVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La------~~g~~vvg~~iD~~a~~~~~aa~----rg~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
+.+|+=+|+|.|-+..... .+.+.++++.-++++.......+ .+.+.++..|...++-+..+.|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 5677999999997554332 25677777555554332221111 1347888999999985568899998753
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|..+.+.+--.+-|..+.+.|||+|+.+=..+
T Consensus 448 -LGSFGDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 448 -LGSFGDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred -hccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence 33345555556778999999999999865554
No 284
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=84.01 E-value=20 Score=34.46 Aligned_cols=101 Identities=17% Similarity=0.059 Sum_probs=60.6
Q ss_pred ccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH----HHHhcC-----CccEEEeccC-----cC---CCCCCcc
Q 047630 237 IRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN----FIASRG-----VVPLYISISQ-----RL---PFFDNTL 299 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg-----~i~~~~~d~~-----~L---pf~d~sF 299 (392)
++.|+.+|||-=.-+.++.... .+..+++|. +...+ .+.+.+ ...++..|.. .+ .|..+.-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~-~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPD-GTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCC-CCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 4557999999988887775432 234445776 33332 222211 2334444432 11 1222223
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
-++++-.++.+ .+++....+++.+.+...||+.++++...
T Consensus 160 tl~i~EGvl~Y-L~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 160 TAWLWEGLLMY-LTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred eeeeecchhhc-CCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 35555565544 67788889999999998899999888643
No 285
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.56 E-value=7.9 Score=41.07 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=55.2
Q ss_pred EEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEecc-C----------cCC----------CCC
Q 047630 240 GLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISIS-Q----------RLP----------FFD 296 (392)
Q Consensus 240 VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~-~----------~Lp----------f~d 296 (392)
|+=+|+|. |..+...++ .|..|+++| .+....+.+.+-|. .+..-+. + .+. +.+
T Consensus 168 VlViGaG~iGL~Ai~~Ak~lGA~V~a~D--~~~~rle~aeslGA-~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~ 244 (509)
T PRK09424 168 VLVIGAGVAGLAAIGAAGSLGAIVRAFD--TRPEVAEQVESMGA-EFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE 244 (509)
T ss_pred EEEECCcHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHcCC-eEEEeccccccccccchhhhcchhHHHHHHHHHHh
Confidence 39999998 556666666 688888844 54455556666563 3331111 1 010 011
Q ss_pred --CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 297 --NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 297 --~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+|+|+..-....- +... .+.+++.+.+||||.++...
T Consensus 245 ~~~gaDVVIetag~pg~-~aP~--lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 245 QAKEVDIIITTALIPGK-PAPK--LITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred ccCCCCEEEECCCCCcc-cCcc--hHHHHHHHhcCCCCEEEEEc
Confidence 358999987654221 1111 23599999999999986543
No 286
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=83.15 E-value=18 Score=35.84 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecccccch
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFCVGAQL 346 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~~~~~l 346 (392)
++.+|..+.++|+|||+|.+..|..-++.+
T Consensus 223 L~~~L~~a~~~L~~gGRl~VIsFHSLEDRi 252 (314)
T COG0275 223 LEEALEAALDLLKPGGRLAVISFHSLEDRI 252 (314)
T ss_pred HHHHHHHHHHhhCCCcEEEEEEecchHHHH
Confidence 556888888999999999999998876666
No 287
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=82.98 E-value=21 Score=34.47 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=54.6
Q ss_pred EEEcCCcchHHHHHHH----cCCEEEEEecCCCchhHHHHH---hc---CC-ccEEEecc----CcCCCCCCcccEEEEc
Q 047630 241 LDIGGGVATFAVRMME----RNITIVTTSMNLNGPFNNFIA---SR---GV-VPLYISIS----QRLPFFDNTLDIVHSM 305 (392)
Q Consensus 241 LDIGCGtG~~a~~La~----~g~~vvg~~iD~~a~~~~~aa---~r---g~-i~~~~~d~----~~Lpf~d~sFDlV~s~ 305 (392)
+|+|.|+..=+..|.+ ++.-...+-+|+++......+ .+ ++ +..++++. ..+| ..++==.++-.
T Consensus 83 veLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl~~flG 161 (321)
T COG4301 83 VELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRLFVFLG 161 (321)
T ss_pred EEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEEEEEec
Confidence 8999999886655544 554444444667565554211 11 21 22334442 2233 11222233334
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+-++.+. ....+|..+..+|+||-+|.+..
T Consensus 162 StlGN~tp~-e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 162 STLGNLTPG-ECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred ccccCCChH-HHHHHHHHHHhcCCCcceEEEec
Confidence 556665444 44679999999999999997664
No 288
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=82.88 E-value=2.7 Score=42.24 Aligned_cols=83 Identities=11% Similarity=0.054 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhH---------HHHHhcCC----ccEEEe
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFN---------NFIASRGV----VPLYIS 287 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~---------~~aa~rg~----i~~~~~ 287 (392)
..++........+|.- |+|==.|||.+....+.-|.-|+|+|||...... ++..+.|. +.+..+
T Consensus 196 LSli~AN~Amv~pGdi---vyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~ 272 (421)
T KOG2671|consen 196 LSLIMANQAMVKPGDI---VYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA 272 (421)
T ss_pred HHHHHhhhhccCCCCE---EecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeee
Confidence 4455555554555443 5999999999999999999999998888632221 11222231 456677
Q ss_pred ccCcCCCC-CCcccEEEEcc
Q 047630 288 ISQRLPFF-DNTLDIVHSMH 306 (392)
Q Consensus 288 d~~~Lpf~-d~sFDlV~s~~ 306 (392)
|...-|.. ...||.|+|--
T Consensus 273 D~sn~~~rsn~~fDaIvcDP 292 (421)
T KOG2671|consen 273 DFSNPPLRSNLKFDAIVCDP 292 (421)
T ss_pred cccCcchhhcceeeEEEeCC
Confidence 76665553 45799999953
No 289
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=82.78 E-value=1.8 Score=41.19 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=43.7
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH--------hcC--------CccEEEe
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA--------SRG--------VVPLYIS 287 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa--------~rg--------~i~~~~~ 287 (392)
.+.+..++.++.. .+|||.=+|-|.-+.-++..|.+|+++. -+ +....+. ... .++++.+
T Consensus 64 ~l~kA~Glk~~~~-~~VLDaTaGLG~Da~vlA~~G~~V~~lE--rs-pvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVGLKPGMR-PSVLDATAGLGRDAFVLASLGCKVTGLE--RS-PVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT-BTTB----EEETT-TTSHHHHHHHHHT--EEEEE-----HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhCCCCCCC-CEEEECCCcchHHHHHHHccCCeEEEEE--CC-HHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 4444555665432 2459999999999999998899999844 42 2322111 111 1677788
Q ss_pred ccCc-CCCCCCcccEEEEcccccc
Q 047630 288 ISQR-LPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 288 d~~~-Lpf~d~sFDlV~s~~~l~~ 310 (392)
|... +..++++||+|+.--.+.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 7554 5566899999999776654
No 290
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=81.11 E-value=8.5 Score=35.76 Aligned_cols=99 Identities=7% Similarity=0.045 Sum_probs=61.0
Q ss_pred ccEEEEEcCCcchHHHHHHH----cC--CEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCC-------CCCcccEEE
Q 047630 237 IRIGLDIGGGVATFAVRMME----RN--ITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPF-------FDNTLDIVH 303 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~----~g--~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf-------~d~sFDlV~ 303 (392)
.+.|+++|.-.|.-+..++. -| ++|+++|+|+ -+....+.+...+.|+.++..+... ..+.--+.+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi-~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDI-KPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEeccc-CcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 35569999988875555554 45 8899988888 3333344433336788887554321 112223344
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|..+-|+. +...+-|+-..+.|..|-++++.+-
T Consensus 149 ilDsdHs~---~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 149 ILDSDHSM---EHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred EecCCchH---HHHHHHHHHhhhHhhcCceEEEecc
Confidence 44555443 4444566777889999999987763
No 291
>PRK10458 DNA cytosine methylase; Provisional
Probab=80.99 E-value=65 Score=33.90 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=65.2
Q ss_pred EEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEEEeccCcCCCC-----------------CCc
Q 047630 240 GLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLYISISQRLPFF-----------------DNT 298 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~~~d~~~Lpf~-----------------d~s 298 (392)
++|+=||.|.+..-+...|.++++ .+|++....+....+ .....+.+|+..+... -..
T Consensus 91 ~iDLFsGiGGl~lGfe~aG~~~v~-a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p~ 169 (467)
T PRK10458 91 FIDLFAGIGGIRRGFEAIGGQCVF-TSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIPD 169 (467)
T ss_pred EEEeCcCccHHHHHHHHcCCEEEE-EEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCCC
Confidence 499999999999999888887653 344422332221111 1123344555544311 124
Q ss_pred ccEEEEcccccccCC----------------chhHHHHHHHHHHcc---cCCcEEEEEeecc----cccchHHHHHHHHH
Q 047630 299 LDIVHSMHVLSNWIP----------------TTLLHFLMFDIYRVL---RPGGLFWLDHFFC----VGAQLEDVYVPLIE 355 (392)
Q Consensus 299 FDlV~s~~~l~~~~~----------------~~~l~~~L~el~RvL---KPGG~lii~~~~~----~~~~l~~~l~~ll~ 355 (392)
+|+++....-..+.. .+....++.++.|++ +|. +|++..... ......+.+.+.++
T Consensus 170 ~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk-~fvlENV~gl~s~~~g~~f~~i~~~L~ 248 (467)
T PRK10458 170 HDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA-IFVLENVKNLKSHDKGKTFRIIMQTLD 248 (467)
T ss_pred CCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC-EEEEeCcHhhhcccccHHHHHHHHHHH
Confidence 798887543332210 011122555555554 554 445554321 12234556788889
Q ss_pred HcCCeEE
Q 047630 356 SVGFNKL 362 (392)
Q Consensus 356 ~aGf~~i 362 (392)
+.||.+.
T Consensus 249 ~lGY~v~ 255 (467)
T PRK10458 249 ELGYDVA 255 (467)
T ss_pred HcCCeEE
Confidence 9999976
No 292
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=80.94 E-value=6.4 Score=38.79 Aligned_cols=88 Identities=13% Similarity=0.039 Sum_probs=50.3
Q ss_pred EEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEe---ccCcCCCCCCcccEEEEcccccccCCc
Q 047630 241 LDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYIS---ISQRLPFFDNTLDIVHSMHVLSNWIPT 314 (392)
Q Consensus 241 LDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~---d~~~Lpf~d~sFDlV~s~~~l~~~~~~ 314 (392)
|=+|+|. |..+..+++ .|. .+++++ .+....+.+.+.|...++.. +..++....+.+|+|+-.-.-
T Consensus 174 lV~G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~------ 245 (343)
T PRK09880 174 FVSGVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH------ 245 (343)
T ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC------
Confidence 7678753 566667776 577 576644 33445555556663222211 111111112358988754321
Q ss_pred hhHHHHHHHHHHcccCCcEEEEEee
Q 047630 315 TLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
...+....+.|++||.+++...
T Consensus 246 ---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 246 ---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---HHHHHHHHHHhhcCCEEEEEcc
Confidence 1356788899999999987654
No 293
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=80.75 E-value=1 Score=38.57 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=43.4
Q ss_pred cEEEeccCc-CCCCCCcccEEEEcccccccCCch-hHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCe
Q 047630 283 PLYISISQR-LPFFDNTLDIVHSMHVLSNWIPTT-LLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFN 360 (392)
Q Consensus 283 ~~~~~d~~~-Lpf~d~sFDlV~s~~~l~~~~~~~-~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~ 360 (392)
.+..+|+.. ++--+..||+|+.-. +..-..++ --..++++++|.++|||.+...... ..++..+.++||.
T Consensus 34 ~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a-------~~Vr~~L~~aGF~ 105 (124)
T PF05430_consen 34 TLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYSSA-------GAVRRALQQAGFE 105 (124)
T ss_dssp EEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B-------HHHHHHHHHCTEE
T ss_pred EEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech-------HHHHHHHHHcCCE
Confidence 455566533 222236789888652 11111111 1246999999999999988544321 2377899999999
Q ss_pred EEEEE
Q 047630 361 KLKWV 365 (392)
Q Consensus 361 ~i~w~ 365 (392)
+-+-.
T Consensus 106 v~~~~ 110 (124)
T PF05430_consen 106 VEKVP 110 (124)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 76544
No 294
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=80.66 E-value=46 Score=35.15 Aligned_cols=112 Identities=17% Similarity=0.150 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH----cC--CEEEEEecCCCchhHH----HHHhcCC---ccEEEe
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMME----RN--ITIVTTSMNLNGPFNN----FIASRGV---VPLYIS 287 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~----~g--~~vvg~~iD~~a~~~~----~aa~rg~---i~~~~~ 287 (392)
+..++.+++...+.. +|+|-.||+|.+.....+ .. ...+| .+++..... .+.-+|. +....+
T Consensus 174 v~~liv~~l~~~~~~---~i~DpacGsgg~l~~a~~~~~~~~~~~~~yG--qE~~~~t~~l~~mN~~lhgi~~~~~i~~~ 248 (489)
T COG0286 174 VSELIVELLDPEPRN---SIYDPACGSGGMLLQAAKYLKRHQDEIFIYG--QEINDTTYRLAKMNLILHGIEGDANIRHG 248 (489)
T ss_pred HHHHHHHHcCCCCCC---eecCCCCchhHHHHHHHHHHHhhccceeEEE--EeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence 555666665443333 459999999987665554 22 44566 443222222 2222332 233344
Q ss_pred ccCcCCC-----CCCcccEEEEccccc--ccCC--------------------chhHHHHHHHHHHcccCCcEEEEE
Q 047630 288 ISQRLPF-----FDNTLDIVHSMHVLS--NWIP--------------------TTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 288 d~~~Lpf-----~d~sFDlV~s~~~l~--~~~~--------------------~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+...-|. ..+.||.|+++..+. .|.. ...-..+++.+.+.|+|||+..|.
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 4333232 336799999985553 2211 111257899999999999866444
No 295
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=80.09 E-value=4 Score=33.94 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=55.0
Q ss_pred CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----C-CCCCcccEEEEcccccccCCchhHH
Q 047630 246 GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----P-FFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 246 GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----p-f~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
|.|..+..+++ .|.++++++ .+....+.+.+.|...++.....++ . ...+.+|+|+-.-.- .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~--~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---------~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATD--RSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---------G 69 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE--SSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---------H
T ss_pred ChHHHHHHHHHHcCCEEEEEE--CCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc---------H
Confidence 46888888887 688888855 4345556666667322322222211 1 233579999864331 2
Q ss_pred HHHHHHHHcccCCcEEEEEeecc
Q 047630 319 FLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~~~~ 341 (392)
..+++...+|++||.+++.....
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHhccCCEEEEEEccC
Confidence 47899999999999998887665
No 296
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=78.69 E-value=52 Score=31.52 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=59.7
Q ss_pred EEEcCCcch-HHHHHHHcCCEEEEEecCCCchhHH----HHHhcCC-ccEEEeccCc-CCC-CCCcccEEEEcccccccC
Q 047630 241 LDIGGGVAT-FAVRMMERNITIVTTSMNLNGPFNN----FIASRGV-VPLYISISQR-LPF-FDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 241 LDIGCGtG~-~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg~-i~~~~~d~~~-Lpf-~d~sFDlV~s~~~l~~~~ 312 (392)
|=+|=+.-. ++..+......++.+|+| .-... .+.+.|+ ++.+..|... +|- ..++||++++.-..
T Consensus 49 l~lGDDDLtSlA~al~~~~~~I~VvDiD--eRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy---- 122 (243)
T PF01861_consen 49 LFLGDDDLTSLALALTGLPKRITVVDID--ERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY---- 122 (243)
T ss_dssp EEES-TT-HHHHHHHHT--SEEEEE-S---HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S----
T ss_pred EEEcCCcHHHHHHHhhCCCCeEEEEEcC--HHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC----
Confidence 888865543 555565566778885544 33333 3344453 5566666543 332 24799999987543
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEEeecccccch--HHHHHHHHHHcCCeEEEEEE
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL--EDVYVPLIESVGFNKLKWVV 366 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l--~~~l~~ll~~aGf~~i~w~~ 366 (392)
..+.+.-++......||.-|-..+..+....... -..+++.+.+.||-+-....
T Consensus 123 T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 123 TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHh
Confidence 2267778999999999977743333333322112 23477788899987765543
No 297
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=78.15 E-value=6.3 Score=35.75 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC-CeEEEEEEeecc
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG-FNKLKWVVGRKL 370 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG-f~~i~w~~~~k~ 370 (392)
+..++.+++|+|||||.+++..-...... .....+.+..| |....+.+..+.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~~--~~~~~~~~~~g~~~~~~~iiW~K~ 87 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIAG--FLFELALEIFGGFFLRNEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEECT--HHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhhH--HHHHHHHHHhhhhheeccceeEec
Confidence 56789999999999999977643322222 12344555567 876555444443
No 298
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=77.99 E-value=11 Score=34.81 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=53.3
Q ss_pred CCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCCCCcccEEEE
Q 047630 232 KKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFFDNTLDIVHS 304 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~d~sFDlV~s 304 (392)
.++.++ |..|+|. |..+..+++ .|.++++++ .+....+.+.+.+...++....... ....+.+|+|+.
T Consensus 133 ~~~~~v---li~g~~~~G~~~~~~a~~~g~~v~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 133 KPGDTV---LVLGAGGVGLLAAQLAKAAGARVIVTD--RSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCEE---EEECCCHHHHHHHHHHHHcCCeEEEEc--CCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 444555 9999985 666666666 678887744 3233444444444211111110000 112456999986
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
...- . ..+..+.+.|+++|.++....
T Consensus 208 ~~~~------~---~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 208 AVGG------P---ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCCC------H---HHHHHHHHhcccCCEEEEEcc
Confidence 4321 0 256778889999999976654
No 299
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=76.85 E-value=2.2 Score=41.64 Aligned_cols=96 Identities=15% Similarity=0.231 Sum_probs=51.8
Q ss_pred cEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHH-----------HHH--hc--C-CccEEEeccCcCCC-CCC--
Q 047630 238 RIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNN-----------FIA--SR--G-VVPLYISISQRLPF-FDN-- 297 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~-----------~aa--~r--g-~i~~~~~d~~~Lpf-~d~-- 297 (392)
++|||+|||.|.-.......+ ..++..|.+ +.... .+. .. . ..........+.-+ ..+
T Consensus 118 k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~n--a~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~ 195 (282)
T KOG2920|consen 118 KRVLELGCGAALPGIFAFVKGAVSVHFQDFN--AEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT 195 (282)
T ss_pred ceeEecCCcccccchhhhhhccceeeeEecc--hhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence 345999999999877777665 566663333 22221 111 01 1 11111220111111 112
Q ss_pred cccEEEEcccccccCCchhHHHH-HHHHHHcccCCcEEEEEe
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFL-MFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~-L~el~RvLKPGG~lii~~ 338 (392)
.||+|.++-.+....... .+ .......++++|+++...
T Consensus 196 ~ydlIlsSetiy~~~~~~---~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLA---VLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred chhhhhhhhhhhCcchhh---hhHhhhhhhcCCccchhhhhh
Confidence 689998887775542222 23 566677889999886653
No 300
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=76.20 E-value=9.1 Score=37.91 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=41.9
Q ss_pred EEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc-----CCccEEEeccCcCC-----CCCCcccEEEEccc
Q 047630 240 GLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR-----GVVPLYISISQRLP-----FFDNTLDIVHSMHV 307 (392)
Q Consensus 240 VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r-----g~i~~~~~d~~~Lp-----f~d~sFDlV~s~~~ 307 (392)
++|.=+|.|..+..+++. +..++|+|.|. ...+.+.++ +.+.+++++...+. ...+++|.|+....
T Consensus 24 yVD~TlG~GGHS~~iL~~l~~g~vigiD~D~--~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 24 YIDCTLGFGGHSKAILEQLGTGRLIGIDRDP--QAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred EEEeCCCChHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEEEEecc
Confidence 499999999999999984 35777755443 444333221 23667777655432 13356888886543
Q ss_pred c
Q 047630 308 L 308 (392)
Q Consensus 308 l 308 (392)
+
T Consensus 102 v 102 (305)
T TIGR00006 102 V 102 (305)
T ss_pred C
Confidence 3
No 301
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=76.16 E-value=16 Score=35.87 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=52.9
Q ss_pred hhCCCCcccEEEEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEccc
Q 047630 230 ATKKPGTIRIGLDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
.+.++.++ |=.|+| .|..+..+++ .|..+++++ .+....+.+.+.|. ..+.. .... ..+.+|+++-...
T Consensus 162 ~~~~g~~V---lV~G~g~iG~~a~~~a~~~G~~vi~~~--~~~~~~~~a~~~Ga-~~vi~-~~~~--~~~~~d~~i~~~~ 232 (329)
T TIGR02822 162 SLPPGGRL---GLYGFGGSAHLTAQVALAQGATVHVMT--RGAAARRLALALGA-ASAGG-AYDT--PPEPLDAAILFAP 232 (329)
T ss_pred CCCCCCEE---EEEcCCHHHHHHHHHHHHCCCeEEEEe--CChHHHHHHHHhCC-ceecc-cccc--CcccceEEEECCC
Confidence 34455555 777865 3556666666 688877744 33345556666663 22211 1111 1235787653322
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
. ...+.+..+.|++||.+++...
T Consensus 233 ~---------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 A---------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred c---------HHHHHHHHHhhCCCcEEEEEec
Confidence 1 1367888899999999977654
No 302
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=75.97 E-value=14 Score=36.48 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=53.5
Q ss_pred CCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecC-CCchhHHHHHhcCCccEEEeccCcC--CCCCCcccEEEEccc
Q 047630 233 KPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMN-LNGPFNNFIASRGVVPLYISISQRL--PFFDNTLDIVHSMHV 307 (392)
Q Consensus 233 ~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD-~~a~~~~~aa~rg~i~~~~~d~~~L--pf~d~sFDlV~s~~~ 307 (392)
++.++ |=+|+|. |.++..+++ .|..+++++-+ .+....+.+.+.|. ..+....+++ ....+.+|+|+-.-.
T Consensus 172 ~g~~v---lI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga-~~v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 172 NPRRA---LVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGA-TYVNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCEE---EEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC-EEecCCccchhhhhhcCCCCEEEECcC
Confidence 44555 7778764 667777776 67888875532 12334445555553 3221111110 001245888876532
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
- ...+.+..++|++||.+++...
T Consensus 248 ~---------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 V---------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred C---------HHHHHHHHHHccCCcEEEEEec
Confidence 1 1257888999999999976654
No 303
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=75.93 E-value=6.8 Score=37.66 Aligned_cols=85 Identities=21% Similarity=0.240 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHH----HhcC-CccEEEeccCcCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFI----ASRG-VVPLYISISQRLP 293 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~a----a~rg-~i~~~~~d~~~Lp 293 (392)
.+...+.+.+..+ ...+|+|||||.=-++..+... +..++++|+| ....++. ..-+ ...+.+.|...-+
T Consensus 92 Ld~fY~~if~~~~--~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID--~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 92 LDEFYDEIFGRIP--PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDID--SQLVEFLNAFLAVLGVPHDARVRDLLSDP 167 (251)
T ss_dssp HHHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB--HHHHHHHHHHHHHTT-CEEEEEE-TTTSH
T ss_pred HHHHHHHHHhcCC--CCchhhhhhccCCceehhhcccCCCcEEEEEeCC--HHHHHHHHHHHHhhCCCcceeEeeeeccC
Confidence 5666777765432 2455699999999888877764 4677775554 4444422 2223 2345555544332
Q ss_pred CCCCcccEEEEcccccc
Q 047630 294 FFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 294 f~d~sFDlV~s~~~l~~ 310 (392)
+....|+++..=+++-
T Consensus 168 -~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 168 -PKEPADLALLLKTLPC 183 (251)
T ss_dssp -TTSEESEEEEET-HHH
T ss_pred -CCCCcchhhHHHHHHH
Confidence 4667899998876654
No 304
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=75.15 E-value=16 Score=35.54 Aligned_cols=87 Identities=20% Similarity=0.149 Sum_probs=48.1
Q ss_pred EEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEec---cCcCCCCCCcccEEEEcccccccCCc
Q 047630 241 LDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISI---SQRLPFFDNTLDIVHSMHVLSNWIPT 314 (392)
Q Consensus 241 LDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d---~~~Lpf~d~sFDlV~s~~~l~~~~~~ 314 (392)
|-.|+|. |..+..+++ .|. .+++++ .+......+.+.+.-.++... ...+....+.+|+|+.....
T Consensus 170 LI~g~g~vG~~~~~lak~~G~~~v~~~~--~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~------ 241 (339)
T cd08232 170 LVTGAGPIGALVVAAARRAGAAEIVATD--LADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA------ 241 (339)
T ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC------
Confidence 7788765 666666666 677 666643 323333333444421222111 11222122358998865331
Q ss_pred hhHHHHHHHHHHcccCCcEEEEEe
Q 047630 315 TLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
...+.++.+.|+++|.++...
T Consensus 242 ---~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 242 ---PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ---HHHHHHHHHHHhcCCEEEEEe
Confidence 125688899999999997643
No 305
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=74.94 E-value=19 Score=35.72 Aligned_cols=95 Identities=13% Similarity=0.019 Sum_probs=52.8
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEeccCcC-----C-CCCCcccE
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----P-FFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----p-f~d~sFDl 301 (392)
+.++.++ |=.|+|. |..+..+++ .|.. ++++ +.+....+.+.+.|.-.++.....+. . .....+|+
T Consensus 174 ~~~g~~V---lV~G~g~vG~~a~~~ak~~G~~~Vi~~--~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 174 VKRGDSV---AVIGCGGVGDAAIAGAALAGASKIIAV--DIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 4455555 7778754 556666666 6774 7774 44345555565556322221111110 0 12235898
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|+-.-.- . ..+.+..+.+++||++++...
T Consensus 249 vid~~g~------~---~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 249 VIDAVGR------P---ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEECCCC------H---HHHHHHHHHhccCCEEEEECC
Confidence 8753221 1 256778889999999987654
No 306
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=72.90 E-value=15 Score=35.48 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=52.4
Q ss_pred HhhCCCCcccEEEEEcCCc-chHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEecc-CcC----CCCCCccc
Q 047630 229 LATKKPGTIRIGLDIGGGV-ATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISIS-QRL----PFFDNTLD 300 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~-~~L----pf~d~sFD 300 (392)
..+.++..+ |-+|+|. |..+..+++ .|.. ++.++ .+......+.+.+. ....... ... ....+.+|
T Consensus 155 ~~~~~g~~v---lI~g~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 155 LGIKPGDSV---LVFGAGPIGLLLAQLLKLNGASRVTVAE--PNEEKLELAKKLGA-TETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred cCCCCCCEE---EEECCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCC-eEEecCCCCCHHHHHHhcCCCCc
Confidence 334455555 7778652 556666666 6766 55533 32344445555553 2222211 110 11345689
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+|+....- ...+.++.+.|+++|.++...
T Consensus 229 ~v~~~~~~---------~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 229 VVIEATGV---------PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred EEEECCCC---------hHHHHHHHHHHhcCCEEEEEe
Confidence 99864221 136788899999999997653
No 307
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=71.77 E-value=6 Score=40.41 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=47.4
Q ss_pred ccEEEeccCcC--CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 282 VPLYISISQRL--PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 282 i~~~~~d~~~L--pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+.++.+++.+. ..+++++|.++.+..+. |.+++.+.+.++++.|+++|||++++.....
T Consensus 277 v~i~t~si~~~L~~~~~~s~~~~vL~D~~D-wm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 277 VRIHTDSIEEVLRRLPPGSFDRFVLSDHMD-WMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred EEEEeccHHHHHHhCCCCCeeEEEecchhh-hCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 56666665543 24689999999999884 4677889999999999999999999887654
No 308
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=71.63 E-value=20 Score=35.70 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=52.0
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~d~sFDlV 302 (392)
+.++..+ |=.|+|. |..+..+++ .|. .+++++ .+....+.+.+.|...++......+ ....+.+|+|
T Consensus 189 i~~g~~V---lV~G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 189 VRPGQSV---AVVGLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 4454444 5577653 556666666 677 577744 4344445555555322222111110 0112358888
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+-.-.- . ..+....+.|++||.+++...
T Consensus 264 id~~G~------~---~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 264 FEMAGS------V---PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EECCCC------h---HHHHHHHHHHhcCCEEEEEcc
Confidence 854221 1 356778899999999976543
No 309
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=71.28 E-value=30 Score=34.60 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=59.2
Q ss_pred EEEEEcCCc-chHHHHHHH-cC-CEEEEEecCCCchhHHHHHhcCCccEEEeccCc------CCCCC-CcccEEEEcccc
Q 047630 239 IGLDIGGGV-ATFAVRMME-RN-ITIVTTSMNLNGPFNNFIASRGVVPLYISISQR------LPFFD-NTLDIVHSMHVL 308 (392)
Q Consensus 239 ~VLDIGCGt-G~~a~~La~-~g-~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~------Lpf~d-~sFDlV~s~~~l 308 (392)
+|+=+|||. |.++..+++ .| ..++. +|.+....+.+.+.+-........++ +.... ..+|+|+=.-.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv--~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIV--VDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEE--eCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 459999998 888777777 45 45666 46645555566553433333332221 01112 36999986544
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeecccc
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVG 343 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~ 343 (392)
. ...+..+.+++||||.+.+.......
T Consensus 248 -~-------~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -S-------PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -C-------HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 1 13789999999999999888766444
No 310
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.71 E-value=34 Score=29.15 Aligned_cols=89 Identities=17% Similarity=0.354 Sum_probs=57.0
Q ss_pred CCcccEEEEEcCCcch-HHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC--CCCCCcccEEEEcccccc
Q 047630 234 PGTIRIGLDIGGGVAT-FAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL--PFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 234 ~~~ir~VLDIGCGtG~-~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L--pf~d~sFDlV~s~~~l~~ 310 (392)
.++| .++|-|.=. .+.+|+++|++++++|++.. .+..| +.++..|..+- .... ..|+|.+...
T Consensus 14 ~gkV---vEVGiG~~~~VA~~L~e~g~dv~atDI~~~------~a~~g-~~~v~DDitnP~~~iY~-~A~lIYSiRp--- 79 (129)
T COG1255 14 RGKV---VEVGIGFFLDVAKRLAERGFDVLATDINEK------TAPEG-LRFVVDDITNPNISIYE-GADLIYSIRP--- 79 (129)
T ss_pred CCcE---EEEccchHHHHHHHHHHcCCcEEEEecccc------cCccc-ceEEEccCCCccHHHhh-CccceeecCC---
Confidence 3566 999988754 78899999999999776542 23345 57888886652 2222 3577777553
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+..+...+-++.+.++ .-++|.....
T Consensus 80 ---ppEl~~~ildva~aVg--a~l~I~pL~G 105 (129)
T COG1255 80 ---PPELQSAILDVAKAVG--APLYIKPLTG 105 (129)
T ss_pred ---CHHHHHHHHHHHHhhC--CCEEEEecCC
Confidence 3444556666666654 4555555443
No 311
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=70.58 E-value=18 Score=37.42 Aligned_cols=88 Identities=10% Similarity=0.073 Sum_probs=51.6
Q ss_pred CCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 233 KPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 233 ~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
++.++ +=+|+|. |...+..++ .|..|+.++.| ......+.+.|. ... +.+.. -..+|+|+..-.-
T Consensus 201 ~GktV---vViG~G~IG~~va~~ak~~Ga~ViV~d~d--~~R~~~A~~~G~-~~~--~~~e~---v~~aDVVI~atG~-- 267 (413)
T cd00401 201 AGKVA---VVAGYGDVGKGCAQSLRGQGARVIVTEVD--PICALQAAMEGY-EVM--TMEEA---VKEGDIFVTTTGN-- 267 (413)
T ss_pred CCCEE---EEECCCHHHHHHHHHHHHCCCEEEEEECC--hhhHHHHHhcCC-EEc--cHHHH---HcCCCEEEECCCC--
Confidence 44555 9999997 555444444 78888885544 344455555553 221 11111 1247999865321
Q ss_pred cCCchhHHHHHH-HHHHcccCCcEEEEEeec
Q 047630 311 WIPTTLLHFLMF-DIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 311 ~~~~~~l~~~L~-el~RvLKPGG~lii~~~~ 340 (392)
. .++. +..+.+|+||+++.....
T Consensus 268 ----~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 268 ----K---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ----H---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 1 2444 458899999999776543
No 312
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=70.38 E-value=40 Score=27.33 Aligned_cols=102 Identities=14% Similarity=0.047 Sum_probs=58.4
Q ss_pred CCcchHHHHHHH----cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCC----CCCcccEEEEcccccccCCchh
Q 047630 245 GGVATFAVRMME----RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPF----FDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 245 CGtG~~a~~La~----~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf----~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
||.|.++..+++ .+..++.++ .+....+.+.+.+ +.++.+|..+... .-...|.|++... .+.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid--~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~------~d~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVID--RDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTD------DDE 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEE--SSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESS------SHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEE--CCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccC------CHH
Confidence 455666655554 566888855 4345566677777 6888888665321 2245777776432 222
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEE
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
....+....|-+.|...++..... ....+.++++|...+
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~~-------~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVND-------PENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEESS-------HHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEECC-------HHHHHHHHHCCcCEE
Confidence 234556666777787777655322 225667788886543
No 313
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=69.74 E-value=23 Score=34.06 Aligned_cols=94 Identities=10% Similarity=0.049 Sum_probs=53.6
Q ss_pred HhhCCCCcccEEEEEc--CCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCCCCccc
Q 047630 229 LATKKPGTIRIGLDIG--GGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFFDNTLD 300 (392)
Q Consensus 229 l~l~~~~~ir~VLDIG--CGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~d~sFD 300 (392)
..+.++..+ |=.| .|.|..+..+++ .|.++++++ .+....+.+.+.|.-.++.....++ ....+.+|
T Consensus 139 ~~~~~g~~v---lI~ga~g~vG~~aiqlA~~~G~~vi~~~--~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 139 CKPKAGETV---VVNGAAGAVGSLVGQIAKIKGCKVIGCA--GSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred cCCCCCCEE---EEecCccHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcE
Confidence 334555555 6666 456778877777 688887744 2234444555556322222111111 11224588
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+|+-.-. . ..+.+..+.|+++|.++..
T Consensus 214 ~vld~~g--------~--~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYFDNVG--------G--EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEECCC--------H--HHHHHHHHhhccCCEEEEE
Confidence 8875322 1 2568889999999999754
No 314
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=69.31 E-value=35 Score=33.07 Aligned_cols=95 Identities=9% Similarity=0.071 Sum_probs=54.8
Q ss_pred HHhhCCCCcccEEEEEc--CCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEe-cc-CcC-----CCCCC
Q 047630 228 VLATKKPGTIRIGLDIG--GGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYIS-IS-QRL-----PFFDN 297 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIG--CGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~-d~-~~L-----pf~d~ 297 (392)
...+.++..+ |=.| .|.|..+..+++ .|..+++++ .+....+.+.+.|. ..+.. .. ..+ ....+
T Consensus 133 ~~~~~~g~~V---LI~ga~g~vG~~aiqlAk~~G~~Vi~~~--~s~~~~~~~~~lGa-~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 133 ICGVKGGETV---MVNAAAGAVGSVVGQIAKLKGCKVVGAA--GSDEKVAYLKKLGF-DVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HhCCCCCCEE---EEeCCccHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHcCC-CEEEeccccccHHHHHHHhCCC
Confidence 3445555555 6677 456788888887 688887744 32344455555553 22221 11 011 11224
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.+|+|+-... . ..+.+..+.|++||.++...
T Consensus 207 gvdvv~d~~G--~--------~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 207 GYDCYFDNVG--G--------EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CeEEEEECCC--H--------HHHHHHHHHhCcCcEEEEec
Confidence 5888875321 1 24578889999999998653
No 315
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=69.24 E-value=37 Score=32.73 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=52.5
Q ss_pred hhCCCCcccEEEEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccC-cCC-CCCCcccEEEEc
Q 047630 230 ATKKPGTIRIGLDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQ-RLP-FFDNTLDIVHSM 305 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~-~Lp-f~d~sFDlV~s~ 305 (392)
.+.+++.+ |-+|+| .|..+..+++ .|..+++++ .+....+.+.+.+. ..+..... ... -..+.+|+++..
T Consensus 159 ~~~~~~~v---lI~g~g~iG~~~~~~a~~~G~~v~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~d~vi~~ 232 (330)
T cd08245 159 GPRPGERV---AVLGIGGLGHLAVQYARAMGFETVAIT--RSPDKRELARKLGA-DEVVDSGAELDEQAAAGGADVILVT 232 (330)
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHhCC-cEEeccCCcchHHhccCCCCEEEEC
Confidence 34444455 777886 6766666666 588887744 32344445544452 22222111 100 012458988754
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..- ...+.++.+.|+++|.++...
T Consensus 233 ~~~---------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 233 VVS---------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CCc---------HHHHHHHHHhcccCCEEEEEC
Confidence 221 125688889999999987653
No 316
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=67.34 E-value=36 Score=33.09 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=53.4
Q ss_pred HhhCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCc----C--CCCCCccc
Q 047630 229 LATKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQR----L--PFFDNTLD 300 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~----L--pf~d~sFD 300 (392)
..+.++..+ |-.|+|. |..+..+++ .|..++++. -+......+.+.+...++...... + -..+..+|
T Consensus 155 ~~l~~g~~v---LI~g~g~vG~~a~~lA~~~g~~v~~~~--~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 155 AGVTAGDTV---LVVGAGPIGLGVIQVAKARGARVIVVD--IDDERLEFARELGADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred cCCCCCCEE---EEECCCHHHHHHHHHHHHcCCeEEEEC--CCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 344555555 7778764 667777777 688887743 223333444444421222111111 1 01334589
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+++....- ...+.++.+.|+++|.++..
T Consensus 230 ~vld~~g~---------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDATGN---------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EEEECCCC---------HHHHHHHHHHHhcCCEEEEE
Confidence 99865321 12568889999999998754
No 317
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=67.16 E-value=63 Score=30.83 Aligned_cols=73 Identities=11% Similarity=0.159 Sum_probs=41.9
Q ss_pred HHHHHHHcC--CEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHc
Q 047630 250 FAVRMMERN--ITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRV 327 (392)
Q Consensus 250 ~a~~La~~g--~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~Rv 327 (392)
+|..|.+.| ..|++ .|.+......+.+.|.+.-...+.+.+ ..+|+|+..-.+ .....++.++...
T Consensus 1 ~A~aL~~~g~~~~v~g--~d~~~~~~~~a~~~g~~~~~~~~~~~~----~~~DlvvlavP~------~~~~~~l~~~~~~ 68 (258)
T PF02153_consen 1 IALALRKAGPDVEVYG--YDRDPETLEAALELGIIDEASTDIEAV----EDADLVVLAVPV------SAIEDVLEEIAPY 68 (258)
T ss_dssp HHHHHHHTTTTSEEEE--E-SSHHHHHHHHHTTSSSEEESHHHHG----GCCSEEEE-S-H------HHHHHHHHHHHCG
T ss_pred ChHHHHhCCCCeEEEE--EeCCHHHHHHHHHCCCeeeccCCHhHh----cCCCEEEEcCCH------HHHHHHHHHhhhh
Confidence 467888877 67777 556455555666778655444432222 235988865433 3345667777776
Q ss_pred ccCCcEE
Q 047630 328 LRPGGLF 334 (392)
Q Consensus 328 LKPGG~l 334 (392)
+++|+.+
T Consensus 69 ~~~~~iv 75 (258)
T PF02153_consen 69 LKPGAIV 75 (258)
T ss_dssp S-TTSEE
T ss_pred cCCCcEE
Confidence 6666555
No 318
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=67.00 E-value=24 Score=34.27 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=45.4
Q ss_pred EEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 241 LDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 241 LDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
|=+|||. |.++..+++ .|..++.+ +|.+....+.+.+.. .+ +.... ....+|+|+-.-.- .
T Consensus 149 lV~G~G~vG~~a~q~ak~~G~~~v~~-~~~~~~rl~~a~~~~---~i--~~~~~--~~~g~Dvvid~~G~---------~ 211 (308)
T TIGR01202 149 LIVGHGTLGRLLARLTKAAGGSPPAV-WETNPRRRDGATGYE---VL--DPEKD--PRRDYRAIYDASGD---------P 211 (308)
T ss_pred EEECCCHHHHHHHHHHHHcCCceEEE-eCCCHHHHHhhhhcc---cc--Chhhc--cCCCCCEEEECCCC---------H
Confidence 6678764 777777776 67764331 344333332222211 11 11110 23458988864321 1
Q ss_pred HHHHHHHHcccCCcEEEEEee
Q 047630 319 FLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~~ 339 (392)
..+.++.+.|++||++++.-.
T Consensus 212 ~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHhhhcCcEEEEEee
Confidence 356888899999999986654
No 319
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=66.75 E-value=34 Score=34.08 Aligned_cols=86 Identities=13% Similarity=0.093 Sum_probs=46.3
Q ss_pred EEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHH-HHHhcCCccEEEec--cCcCCCCCCcccEEEEcccccccCCch
Q 047630 241 LDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNN-FIASRGVVPLYISI--SQRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 241 LDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~-~aa~rg~i~~~~~d--~~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
|=.|+|. |.++..+++ .|..+++++.+ ..... .+.+.|. ..+... ...+.-..+.+|+|+-.-.-
T Consensus 188 lV~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga-~~vi~~~~~~~~~~~~~~~D~vid~~g~------- 257 (360)
T PLN02586 188 GVAGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGA-DSFLVSTDPEKMKAAIGTMDYIIDTVSA------- 257 (360)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCC-cEEEcCCCHHHHHhhcCCCCEEEECCCC-------
Confidence 6688754 666666766 68887774433 23323 3334453 222211 01110001247888753321
Q ss_pred hHHHHHHHHHHcccCCcEEEEEe
Q 047630 316 LLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~lii~~ 338 (392)
...+.+..+.|++||.++...
T Consensus 258 --~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 258 --VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred --HHHHHHHHHHhcCCcEEEEeC
Confidence 125678889999999987653
No 320
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.24 E-value=34 Score=33.40 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=50.9
Q ss_pred HhhCCCCcccEEEEEcCCc-chHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEeccCc-------C--CCCC
Q 047630 229 LATKKPGTIRIGLDIGGGV-ATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISISQR-------L--PFFD 296 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~-------L--pf~d 296 (392)
..+.++.++ |-.|+|. |..+..+++ .|.. +++++ -+......+.+.+.-.++...... + ....
T Consensus 158 ~~~~~g~~v---lI~g~g~vG~~a~~lak~~G~~~v~~~~--~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 158 AGVRPGDTV---LVFGAGPIGLLTAAVAKAFGATKVVVTD--IDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred cCCCCCCEE---EEECCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCC
Confidence 334555555 5567654 666777776 5776 65533 223333344444421222111111 0 1233
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
..+|+|+-...- . ..+.+..+.|+++|.++..
T Consensus 233 ~~~d~vld~~g~------~---~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 233 KGPDVVIECTGA------E---SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCEEEECCCC------H---HHHHHHHHHhhcCCEEEEE
Confidence 558999864321 1 2568889999999998754
No 321
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=65.83 E-value=8.8 Score=37.71 Aligned_cols=61 Identities=11% Similarity=0.353 Sum_probs=43.1
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee--cc--ccc---chHHHHHHHHHHcCCeEEE
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF--FC--VGA---QLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~--~~--~~~---~l~~~l~~ll~~aGf~~i~ 363 (392)
..+.||+|+.+....|... .++.++++|||.|++..- .- ..+ ...+.+.++++++||+.+.
T Consensus 219 y~~~Fd~ifvs~s~vh~L~--------p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 219 YQNFFDLIFVSCSMVHFLK--------PELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred hcCCCCEEEEhhhhHhhcc--------hHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 4678999998876666422 347789999999998873 11 111 2256688899999998653
No 322
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=64.64 E-value=8.1 Score=38.11 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=58.5
Q ss_pred cccEEEEEcCCcchHHHHHHHcC-C-EEEEEecCCCchhHH-----HHHhc---CCccEEEeccCcC--CCCCCcccEEE
Q 047630 236 TIRIGLDIGGGVATFAVRMMERN-I-TIVTTSMNLNGPFNN-----FIASR---GVVPLYISISQRL--PFFDNTLDIVH 303 (392)
Q Consensus 236 ~ir~VLDIGCGtG~~a~~La~~g-~-~vvg~~iD~~a~~~~-----~aa~r---g~i~~~~~d~~~L--pf~d~sFDlV~ 303 (392)
+.++||=||.|.|.+.....++. + .+.-.++|.+...+. .++-. ..+.+..+|...+ ....+.||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 34556999999999988877751 1 233323332111111 11111 1256677764332 23478999998
Q ss_pred EcccccccCCch--hHHHHHHHHHHcccCCcEEEEEe
Q 047630 304 SMHVLSNWIPTT--LLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 304 s~~~l~~~~~~~--~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.-..= ...+.. -.+.++..+.+.||+||++++..
T Consensus 201 ~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 201 TDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 64211 111111 23467888999999999997764
No 323
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=64.44 E-value=39 Score=32.91 Aligned_cols=85 Identities=8% Similarity=-0.003 Sum_probs=47.8
Q ss_pred EEEcC--CcchHHHHHHH-cCC-EEEEEecCCCchhHHHHHh-cCCccEEEeccCcC-----CCCCCcccEEEEcccccc
Q 047630 241 LDIGG--GVATFAVRMME-RNI-TIVTTSMNLNGPFNNFIAS-RGVVPLYISISQRL-----PFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 241 LDIGC--GtG~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~-rg~i~~~~~d~~~L-----pf~d~sFDlV~s~~~l~~ 310 (392)
|=.|+ |.|..+..+++ .|. .+++++ .+....+.+.+ -|.-.++......+ ...++.+|+|+..-.-
T Consensus 159 lI~ga~g~vG~~aiqlAk~~G~~~Vi~~~--~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~-- 234 (345)
T cd08293 159 VVSGAAGACGSLAGQIGRLLGCSRVVGIC--GSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG-- 234 (345)
T ss_pred EEECCCcHHHHHHHHHHHHcCCCEEEEEc--CCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc--
Confidence 66664 67788888877 687 687743 32333344444 45322222111111 1112468988853221
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
..+.+..+.|+++|.++..
T Consensus 235 --------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 235 --------EISDTVISQMNENSHIILC 253 (345)
T ss_pred --------HHHHHHHHHhccCCEEEEE
Confidence 1347788999999999764
No 324
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=64.36 E-value=37 Score=33.12 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=54.3
Q ss_pred EEEEcCCc--chHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhH
Q 047630 240 GLDIGGGV--ATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLL 317 (392)
Q Consensus 240 VLDIGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l 317 (392)
|+=+|.|- |.++..+.+.|..+..++.|.+....+.+.+.|.+.-...+... ......|+|+.+-.+ ...
T Consensus 6 v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~--~~~~~aD~VivavPi------~~~ 77 (279)
T COG0287 6 VGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLA--EAAAEADLVIVAVPI------EAT 77 (279)
T ss_pred EEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhh--hhcccCCEEEEeccH------HHH
Confidence 36677764 66888888899888777777744444555556642211111101 123457998865443 344
Q ss_pred HHHHHHHHHcccCCcEE
Q 047630 318 HFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 318 ~~~L~el~RvLKPGG~l 334 (392)
..+++++...|++|..+
T Consensus 78 ~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 78 EEVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHHhcccCCCCCEE
Confidence 67889999889988765
No 325
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.83 E-value=26 Score=31.33 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC-CEEEEEecCCCchhHH---H-HHhcC---CccEEEeccCcC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN-ITIVTTSMNLNGPFNN---F-IASRG---VVPLYISISQRL 292 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g-~~vvg~~iD~~a~~~~---~-aa~rg---~i~~~~~d~~~L 292 (392)
....++.++.+..+..-...+|+|.|.|++-...++.| ...+|+.++ +-... . +.+.| ...|..-|.-..
T Consensus 57 tteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELN--pwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 57 TTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELN--PWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred cHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceecc--HHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 34456666666543222233999999999988888877 455664443 22222 1 11222 245555555555
Q ss_pred CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 293 PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
...|-.+-+|+-...+ +..+-..+..-+..|-.++-..|.-
T Consensus 135 dl~dy~~vviFgaes~--------m~dLe~KL~~E~p~nt~vvacRFPL 175 (199)
T KOG4058|consen 135 DLRDYRNVVIFGAESV--------MPDLEDKLRTELPANTRVVACRFPL 175 (199)
T ss_pred cccccceEEEeehHHH--------HhhhHHHHHhhCcCCCeEEEEecCC
Confidence 5444333333322221 1223344444566677776666543
No 326
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=63.81 E-value=12 Score=36.98 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHcccCCcEEEEEeecccccch
Q 047630 315 TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL 346 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l 346 (392)
+.++.+|..+..+|+|||++++..|..-++.+
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlEDri 244 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLEDRI 244 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHHHH
Confidence 56788999999999999999999988766655
No 327
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=63.51 E-value=37 Score=33.09 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=51.7
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEeccC---cC-CC-CCCcccE
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISISQ---RL-PF-FDNTLDI 301 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~---~L-pf-~d~sFDl 301 (392)
.+.++.++ |=+|+|. |..+..+++ .|.. ++++ +.+....+.+.+.|.-.++..... .+ .. ....+|+
T Consensus 160 ~~~~g~~v---lV~G~G~vG~~~~~~ak~~G~~~vi~~--~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 160 GVSGRDTV---LVVGAGPVGLGALMLARALGAEDVIGV--DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 34455555 5567643 455666665 6777 7774 343444455555563222211111 11 11 2336898
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|+-...- . ..+.+..+.|+++|.+++...
T Consensus 235 vid~~g~------~---~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 235 AIECSGN------T---AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EEECCCC------H---HHHHHHHHHhhcCCEEEEEcC
Confidence 8854321 1 245777889999999976543
No 328
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=63.40 E-value=1.3e+02 Score=33.08 Aligned_cols=90 Identities=11% Similarity=0.059 Sum_probs=52.3
Q ss_pred CCcccEEEEcccccccCCchhHHHH-HHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccCCCC
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFL-MFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLDRGP 374 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~-L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d~~~ 374 (392)
.-++|+|++-.=......-..++.. ...+.++|.++|.+++-.+...--....-....+-+. |+.++.....-+ +.
T Consensus 413 ~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~-F~~V~l~qT~~S--Ss 489 (675)
T PF14314_consen 413 NLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRY-FKSVELVQTQFS--SS 489 (675)
T ss_pred CCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhh-cCceEEEECCCC--CC
Confidence 3478999986433221111223333 3445578899999999987543222222233344444 888887755322 34
Q ss_pred cccceeeEEEEEcCCC
Q 047630 375 ELREMYLSALLEKPFL 390 (392)
Q Consensus 375 ~~~e~ylsai~~Kp~~ 390 (392)
.-.|+|+ +++|+.+
T Consensus 490 ~TSEVYl--v~~~~~~ 503 (675)
T PF14314_consen 490 FTSEVYL--VFQKLKK 503 (675)
T ss_pred CceEEEE--EEecccC
Confidence 6779987 8888644
No 329
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=63.18 E-value=13 Score=38.59 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=19.7
Q ss_pred EEEEEcCCcchHHHHHHHcCCE-EEE
Q 047630 239 IGLDIGGGVATFAVRMMERNIT-IVT 263 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~g~~-vvg 263 (392)
.|||||.|||.++...+..|.+ |++
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA 94 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTA 94 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEe
Confidence 4699999999998877776654 555
No 330
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=62.77 E-value=34 Score=32.61 Aligned_cols=92 Identities=15% Similarity=0.111 Sum_probs=51.5
Q ss_pred CCCcccEEEEEcCCc-chHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEec------cCcCCCCCCcccEEE
Q 047630 233 KPGTIRIGLDIGGGV-ATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISI------SQRLPFFDNTLDIVH 303 (392)
Q Consensus 233 ~~~~ir~VLDIGCGt-G~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d------~~~Lpf~d~sFDlV~ 303 (392)
++..+ |=+|+|. |..+..+++ .|.. ++++ +.+....+.+.+.|. ...... ...+. ....+|+|+
T Consensus 120 ~g~~V---lV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga-~~~i~~~~~~~~~~~~~-~~~g~d~vi 192 (280)
T TIGR03366 120 KGRRV---LVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGA-TALAEPEVLAERQGGLQ-NGRGVDVAL 192 (280)
T ss_pred CCCEE---EEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCC-cEecCchhhHHHHHHHh-CCCCCCEEE
Confidence 44444 6677753 556666666 6776 6664 443444455555553 222111 00111 123588887
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
-.-.- ...+.++.+.|++||.+++....
T Consensus 193 d~~G~---------~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 193 EFSGA---------TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred ECCCC---------hHHHHHHHHHhcCCCEEEEeccC
Confidence 53221 13578888999999999876643
No 331
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=62.64 E-value=38 Score=32.86 Aligned_cols=93 Identities=19% Similarity=0.144 Sum_probs=49.0
Q ss_pred hCCCCcccEEEEEcCC-cchHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcC------CCCCCcccE
Q 047630 231 TKKPGTIRIGLDIGGG-VATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL------PFFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L------pf~d~sFDl 301 (392)
+.++..+ |-.|+| .|..+..+++ .|. .++++ +.+......+.+.+...++......+ -...+.+|+
T Consensus 165 ~~~~~~V---lI~g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 165 IKPGSTV---AVIGAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 3444444 666765 3666666666 575 66664 33233333444444212221111110 012356898
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
|+....- . ..+.++.+.|+++|.++..
T Consensus 240 vld~~g~------~---~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 240 VIEAVGF------E---ETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEccCC------H---HHHHHHHHHhhcCCEEEEE
Confidence 8854221 1 2678888999999998754
No 332
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=62.23 E-value=48 Score=32.30 Aligned_cols=111 Identities=15% Similarity=0.086 Sum_probs=58.9
Q ss_pred EEEcCCc--chHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 241 LDIGGGV--ATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 241 LDIGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
-=||+|. +.++..|++.|.+|++.+ .+....+.+.+.+.... .+..++.-.-..-|+|+..- +....+
T Consensus 4 g~IGlG~mG~~la~~L~~~g~~V~~~d--r~~~~~~~l~~~g~~~~--~s~~~~~~~~~~~dvIi~~v------p~~~~~ 73 (298)
T TIGR00872 4 GLIGLGRMGANIVRRLAKRGHDCVGYD--HDQDAVKAMKEDRTTGV--ANLRELSQRLSAPRVVWVMV------PHGIVD 73 (298)
T ss_pred EEEcchHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHcCCccc--CCHHHHHhhcCCCCEEEEEc------CchHHH
Confidence 4477775 236777777899988844 43444455555542211 12111110112358877642 223556
Q ss_pred HHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 319 FLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
.++.++...|++|- ++++.-....... ....+.+++.|...+.
T Consensus 74 ~v~~~l~~~l~~g~-ivid~st~~~~~t-~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 74 AVLEELAPTLEKGD-IVIDGGNSYYKDS-LRRYKLLKEKGIHLLD 116 (298)
T ss_pred HHHHHHHhhCCCCC-EEEECCCCCcccH-HHHHHHHHhcCCeEEe
Confidence 78889988898874 4455322221222 2244456677765443
No 333
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=61.99 E-value=44 Score=33.08 Aligned_cols=94 Identities=11% Similarity=0.093 Sum_probs=53.6
Q ss_pred hhCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHH-hcCCccEEEeccC-cC-----CCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIA-SRGVVPLYISISQ-RL-----PFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa-~rg~i~~~~~d~~-~L-----pf~d~sF 299 (392)
.+.++..+ |=.|+ |.|.++..+++ .|.++++++ .+....+.+. +.|.-.++..... .+ ....+.+
T Consensus 155 ~~~~g~~V---lV~GaaG~vG~~aiqlAk~~G~~Vi~~~--~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 155 SPKKGDSV---FVSAASGAVGQLVGQLAKLHGCYVVGSA--GSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCCCEE---EEecCccHHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 34555555 77776 46888888887 688887743 3233444444 4553222221111 11 1112358
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|+|+-.-. . ..+.+..+.|++||.+++..
T Consensus 230 D~v~d~vG--------~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYFDNVG--------G--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEEECCC--------H--HHHHHHHHHhccCCEEEEEC
Confidence 88875322 1 25678889999999997654
No 334
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=61.67 E-value=65 Score=30.15 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=50.6
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
.+.+++++ |=.|+|. |..+..+++ .|.. +++++ .+......+.+.|....+....... .....+|+|+..-
T Consensus 94 ~~~~g~~v---lI~g~g~vg~~~i~~a~~~g~~~vi~~~--~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~d~vl~~~ 167 (277)
T cd08255 94 EPRLGERV---AVVGLGLVGLLAAQLAKAAGAREVVGVD--PDAARRELAEALGPADPVAADTADE-IGGRGADVVIEAS 167 (277)
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHcCCCcEEEEC--CCHHHHHHHHHcCCCccccccchhh-hcCCCCCEEEEcc
Confidence 34455555 6668765 556666666 5777 77743 3234444444444111111111111 1234588887532
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.- . ..+.+..+.|+++|.++...
T Consensus 168 ~~------~---~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 168 GS------P---SALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CC------h---HHHHHHHHHhcCCcEEEEEe
Confidence 11 1 25678889999999997653
No 335
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=61.64 E-value=30 Score=36.82 Aligned_cols=91 Identities=13% Similarity=0.176 Sum_probs=51.5
Q ss_pred EEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCc-----------------------CC
Q 047630 239 IGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQR-----------------------LP 293 (392)
Q Consensus 239 ~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~-----------------------Lp 293 (392)
.|+=+|+|. |..+..+++ .|..|+++| .+....+.+.+-|. .++.-+... ++
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d--~~~~rle~a~~lGa-~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFD--TRPEVKEQVQSMGA-EFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHcCC-eEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 459999997 455555555 688888744 43344444444442 222111100 11
Q ss_pred CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEE
Q 047630 294 FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 294 f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~li 335 (392)
-.-..+|+|+..-.+.. .+... -+.+++.+.+|||+.++
T Consensus 243 e~~~~~DIVI~TalipG-~~aP~--Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 243 AQAKEVDIIITTALIPG-KPAPK--LITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHhCCCCEEEECcccCC-CCCCe--eehHHHHhhCCCCCEEE
Confidence 11245999987654422 21221 26788899999998873
No 336
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=60.75 E-value=74 Score=31.27 Aligned_cols=87 Identities=14% Similarity=0.039 Sum_probs=45.5
Q ss_pred EEEcCC-cchHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcC--------C-CCCCcccEEEEcccc
Q 047630 241 LDIGGG-VATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL--------P-FFDNTLDIVHSMHVL 308 (392)
Q Consensus 241 LDIGCG-tG~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L--------p-f~d~sFDlV~s~~~l 308 (392)
|=.|+| .|..+..+++ .|. .+++++ .+......+.+.|.-.++....... . ...+.+|+|+....-
T Consensus 182 lI~g~g~vG~~~~~lak~~G~~~v~~~~--~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~ 259 (361)
T cd08231 182 VVQGAGPLGLYAVAAAKLAGARRVIVID--GSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGH 259 (361)
T ss_pred EEECCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEECCCC
Confidence 555654 2445555665 677 777743 3233334444445322221111110 0 123458988854211
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
. ..+.+..+.|+++|.++...
T Consensus 260 ------~---~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 260 ------P---AAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred ------h---HHHHHHHHHhccCCEEEEEc
Confidence 1 25678889999999997553
No 337
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=60.65 E-value=14 Score=33.53 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=28.4
Q ss_pred HHHHHHHHhh--CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecC
Q 047630 222 DFSIDEVLAT--KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMN 267 (392)
Q Consensus 222 ~~lI~~ll~l--~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD 267 (392)
..+++.++.. .+++- |||.=||+|+.+.+..+.|-..+|+++|
T Consensus 178 ~~l~~~lI~~~t~~gdi---VlDpF~GSGTT~~aa~~l~R~~ig~E~~ 222 (231)
T PF01555_consen 178 VELIERLIKASTNPGDI---VLDPFAGSGTTAVAAEELGRRYIGIEID 222 (231)
T ss_dssp HHHHHHHHHHHS-TT-E---EEETT-TTTHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHhhhcccee---eehhhhccChHHHHHHHcCCeEEEEeCC
Confidence 3355555543 23333 5999999999999999999998885544
No 338
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=59.80 E-value=34 Score=33.73 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=48.6
Q ss_pred CCCCcccEEEEEcCCc-chHHHHHHHc---CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEccc
Q 047630 232 KKPGTIRIGLDIGGGV-ATFAVRMMER---NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGt-G~~a~~La~~---g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
.++..+ |=+|||. |.++..++++ +..+++++.+ ....+.+.+-+.. ... ..+. .+..+|+|+-.-.
T Consensus 162 ~~g~~V---lV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~--~~k~~~a~~~~~~-~~~---~~~~-~~~g~d~viD~~G 231 (341)
T cd08237 162 KDRNVI---GVWGDGNLGYITALLLKQIYPESKLVVFGKH--QEKLDLFSFADET-YLI---DDIP-EDLAVDHAFECVG 231 (341)
T ss_pred CCCCEE---EEECCCHHHHHHHHHHHHhcCCCcEEEEeCc--HhHHHHHhhcCce-eeh---hhhh-hccCCcEEEECCC
Confidence 344445 8888765 5566665552 3567775433 3333333322211 111 1111 1124788875332
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
- ......+.+..+.|++||.+++...
T Consensus 232 ~------~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 232 G------RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred C------CccHHHHHHHHHhCcCCcEEEEEee
Confidence 1 0012467888999999999977654
No 339
>PLN02740 Alcohol dehydrogenase-like
Probab=59.48 E-value=50 Score=33.09 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=52.9
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccC--cC-----CCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQ--RL-----PFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~--~L-----pf~d~sF 299 (392)
.+.+++.+ |=+|+|. |..+..+++ .|. .|++++ .+....+.+.+-|.-.++..... .+ ....+.+
T Consensus 195 ~~~~g~~V---lV~G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 195 NVQAGSSV---AIFGLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 34555555 7778754 556666666 677 577744 43455555655563222211110 00 1112258
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEeec
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDHFF 340 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~~~ 340 (392)
|+|+-.-.- . ..+.+..+.+++| |.+++....
T Consensus 270 dvvid~~G~------~---~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 270 DYSFECAGN------V---EVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred CEEEECCCC------h---HHHHHHHHhhhcCCCEEEEEccC
Confidence 988764321 1 3567778889997 988765443
No 340
>PRK11524 putative methyltransferase; Provisional
Probab=59.07 E-value=19 Score=34.96 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=36.9
Q ss_pred HHHHHHHHhhC--CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhc
Q 047630 222 DFSIDEVLATK--KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASR 279 (392)
Q Consensus 222 ~~lI~~ll~l~--~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r 279 (392)
..+++.++... +++.| ||-=||+|+.+.+..+.|-..+|++ ++....+.+.+|
T Consensus 195 ~~L~erlI~~~S~~GD~V---LDPF~GSGTT~~AA~~lgR~~IG~E--i~~~Y~~~a~~R 249 (284)
T PRK11524 195 EALLKRIILASSNPGDIV---LDPFAGSFTTGAVAKASGRKFIGIE--INSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHHHHhCCCCCEE---EECCCCCcHHHHHHHHcCCCEEEEe--CCHHHHHHHHHH
Confidence 44666665443 34444 9999999999999888898999855 444555555554
No 341
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=58.58 E-value=89 Score=30.06 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=49.6
Q ss_pred HHhhCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEc
Q 047630 228 VLATKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
+..+.+++++ |=.|+|. |..+..+++ .|..++.++ .+....+.+.+.|. ...... ... ....+|+++..
T Consensus 162 ~~~~~~~~~v---lV~g~g~vg~~~~~la~~~g~~v~~~~--~~~~~~~~~~~~g~-~~~~~~-~~~--~~~~vD~vi~~ 232 (329)
T cd08298 162 LAGLKPGQRL---GLYGFGASAHLALQIARYQGAEVFAFT--RSGEHQELARELGA-DWAGDS-DDL--PPEPLDAAIIF 232 (329)
T ss_pred hhCCCCCCEE---EEECCcHHHHHHHHHHHHCCCeEEEEc--CChHHHHHHHHhCC-cEEecc-Ccc--CCCcccEEEEc
Confidence 3344555555 4456542 334444444 688877643 22334444444453 222221 111 23458887643
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
... . ..+.++.+.|+++|.++...
T Consensus 233 ~~~------~---~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 233 APV------G---ALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred CCc------H---HHHHHHHHHhhcCCEEEEEc
Confidence 111 1 36788999999999998653
No 342
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=57.80 E-value=56 Score=31.83 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=53.9
Q ss_pred HhhCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHh-cCCccEEEeccC-cC-----CCCCCc
Q 047630 229 LATKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIAS-RGVVPLYISISQ-RL-----PFFDNT 298 (392)
Q Consensus 229 l~l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~-rg~i~~~~~d~~-~L-----pf~d~s 298 (392)
..+.++..+ |=.|+ |.|..+..+++ .|.++++++ .+....+.+.+ .|.-.++..... .+ ....+.
T Consensus 147 ~~~~~g~~V---lI~Ga~G~vG~~aiqlAk~~G~~Vi~~~--~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 147 CKPKKGETV---FVSAASGAVGQLVGQLAKLKGCYVVGSA--GSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred cCCCCCCEE---EEecCccHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCC
Confidence 345555555 76775 56778777777 688887744 22344444444 453222221100 10 111246
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+|+|+-... . ..+.+..+.|+++|.++...
T Consensus 222 vd~v~d~~g--------~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 222 IDIYFDNVG--------G--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred cEEEEECCC--------H--HHHHHHHHHhccCcEEEEec
Confidence 888875322 1 25688889999999997653
No 343
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=57.67 E-value=51 Score=28.96 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=62.2
Q ss_pred EEEcCCc-c-hHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 241 LDIGGGV-A-TFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 241 LDIGCGt-G-~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
-=||+|. | .++..|++.|..+++.| .+....+...+.+. . ...+..++- ...|+|+..- .+....+
T Consensus 5 g~IGlG~mG~~~a~~L~~~g~~v~~~d--~~~~~~~~~~~~g~-~-~~~s~~e~~---~~~dvvi~~v-----~~~~~v~ 72 (163)
T PF03446_consen 5 GFIGLGNMGSAMARNLAKAGYEVTVYD--RSPEKAEALAEAGA-E-VADSPAEAA---EQADVVILCV-----PDDDAVE 72 (163)
T ss_dssp EEE--SHHHHHHHHHHHHTTTEEEEEE--SSHHHHHHHHHTTE-E-EESSHHHHH---HHBSEEEE-S-----SSHHHHH
T ss_pred EEEchHHHHHHHHHHHHhcCCeEEeec--cchhhhhhhHHhhh-h-hhhhhhhHh---hcccceEeec-----ccchhhh
Confidence 3466664 2 26667777899998854 54455555666651 2 222222221 2348887643 3345567
Q ss_pred HHHHH--HHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEe
Q 047630 319 FLMFD--IYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVG 367 (392)
Q Consensus 319 ~~L~e--l~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~ 367 (392)
.++.+ +...|++|..++-.... ..+...++.+.+++.|...+.--+.
T Consensus 73 ~v~~~~~i~~~l~~g~iiid~sT~--~p~~~~~~~~~~~~~g~~~vdapV~ 121 (163)
T PF03446_consen 73 AVLFGENILAGLRPGKIIIDMSTI--SPETSRELAERLAAKGVRYVDAPVS 121 (163)
T ss_dssp HHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhhhhhHHhhccccceEEEecCCc--chhhhhhhhhhhhhccceeeeeeee
Confidence 78888 88888777666533322 2233445777888888666655543
No 344
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=57.57 E-value=56 Score=32.41 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=56.2
Q ss_pred HHhhCCCCcccEEEEEc--CCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEE---ec-cCcC-CC-CCCc
Q 047630 228 VLATKKPGTIRIGLDIG--GGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYI---SI-SQRL-PF-FDNT 298 (392)
Q Consensus 228 ll~l~~~~~ir~VLDIG--CGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~---~d-~~~L-pf-~d~s 298 (392)
..++.+++.+ |=.| .|.|.++..|++ .|..++++... ....+.+.+.|.-..+. .+ .+.+ .. ....
T Consensus 137 ~~~l~~g~~V---LV~gaaGgVG~~aiQlAk~~G~~~v~~~~s--~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGETV---LVHGAAGGVGSAAIQLAKALGATVVAVVSS--SEKLELLKELGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred hcCCCCCCEE---EEecCCchHHHHHHHHHHHcCCcEEEEecC--HHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 3345666666 7666 567889999998 56555553321 33344555555311221 11 1111 11 2336
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
+|+|+..-.- ..+.+..+.|+++|.++.....
T Consensus 212 vDvv~D~vG~----------~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 212 VDVVLDTVGG----------DTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred ceEEEECCCH----------HHHHHHHHHhccCCEEEEEecC
Confidence 9999865432 3567788999999999776543
No 345
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=57.39 E-value=24 Score=35.25 Aligned_cols=89 Identities=16% Similarity=0.233 Sum_probs=55.4
Q ss_pred EEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHH--hcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 241 LDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIA--SRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 241 LDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa--~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
.=||.|. |..++.++- .|.+|+..|+|+ +...... -.+.+.........+.-.-...|+|+..-.+-.- ....
T Consensus 172 ~iiGGGvvgtnaAkiA~glgA~Vtild~n~--~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga-kaPk 248 (371)
T COG0686 172 VVLGGGVVGTNAAKIAIGLGADVTILDLNI--DRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA-KAPK 248 (371)
T ss_pred EEECCccccchHHHHHhccCCeeEEEecCH--HHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC-CCce
Confidence 6788886 788888887 688998866554 3333211 1222444444444443334568999876444332 2222
Q ss_pred HHHHHHHHHHcccCCcEE
Q 047630 317 LHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~l 334 (392)
-+.+++...+|||+.+
T Consensus 249 --Lvt~e~vk~MkpGsVi 264 (371)
T COG0686 249 --LVTREMVKQMKPGSVI 264 (371)
T ss_pred --ehhHHHHHhcCCCcEE
Confidence 3789999999999988
No 346
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=57.29 E-value=26 Score=35.91 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=25.5
Q ss_pred CcccEEEEEcCCcchHHHHHHH-cCCEEEEEec
Q 047630 235 GTIRIGLDIGGGVATFAVRMME-RNITIVTTSM 266 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~i 266 (392)
..+..|+|+|.|-|+++..|+= .|..|++++-
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIeg 184 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEG 184 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEecc
Confidence 4456669999999999998875 6788988553
No 347
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=57.15 E-value=28 Score=33.35 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=46.7
Q ss_pred HHHHHHHhhC----CCCcccEEEEEcCCcchHHHH--HHHcCCEEEEEecCCCchhHH--HHHhc-C---CccEEEe-c-
Q 047630 223 FSIDEVLATK----KPGTIRIGLDIGGGVATFAVR--MMERNITIVTTSMNLNGPFNN--FIASR-G---VVPLYIS-I- 288 (392)
Q Consensus 223 ~lI~~ll~l~----~~~~ir~VLDIGCGtG~~a~~--La~~g~~vvg~~iD~~a~~~~--~aa~r-g---~i~~~~~-d- 288 (392)
.++.+++.-. ++.++ ++||||.|.--+--. ..+.|...+|+++|.-+-.++ .+..+ + .+++... +
T Consensus 62 h~laDLL~s~~g~~~~~~i-~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~ 140 (292)
T COG3129 62 HHLADLLASTSGQIPGKNI-RILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDS 140 (292)
T ss_pred HHHHHHHHhcCCCCCcCce-EEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCc
Confidence 3455555432 22444 359999887653222 234677888877776222222 22222 2 2444333 2
Q ss_pred ---cCcCCCCCCcccEEEEcccccc
Q 047630 289 ---SQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 289 ---~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
...+--.++.||+++|+-.+|.
T Consensus 141 ~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 141 DAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred cccccccccccceeeeEecCCCcch
Confidence 1122224678999999988864
No 348
>PHA01634 hypothetical protein
Probab=56.94 E-value=35 Score=29.74 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=23.3
Q ss_pred cEEEEEcCCcchHHHHHHHcCCE-EEEEecCC
Q 047630 238 RIGLDIGGGVATFAVRMMERNIT-IVTTSMNL 268 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La~~g~~-vvg~~iD~ 268 (392)
++|+|||.+-|.-+.+++-+|+. |++ +++
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GAK~Vva--~E~ 59 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGASFVVQ--YEK 59 (156)
T ss_pred CEEEEecCCccchhhHHhhcCccEEEE--ecc
Confidence 33499999999999999998875 666 445
No 349
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=56.61 E-value=7.9 Score=38.42 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHH
Q 047630 315 TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIES 356 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~ 356 (392)
+.++.+|..+..+|+|||++++..|..-++.+ +++.+.+
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRi---VK~~f~~ 256 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLEDRI---VKQFFRE 256 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHHHH---HHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhhHH---HHHHHHH
Confidence 56788999999999999999999988766555 4445555
No 350
>PLN02827 Alcohol dehydrogenase-like
Probab=56.38 E-value=67 Score=32.25 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=51.0
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEeccC---cC-----CCCCCc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISISQ---RL-----PFFDNT 298 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~---~L-----pf~d~s 298 (392)
.+.++..+ |=.|+|. |.++..+++ .|.. +++ ++.+....+.+.+.|. .......+ .+ ....+.
T Consensus 190 ~~~~g~~V---lV~G~G~vG~~~iqlak~~G~~~vi~--~~~~~~~~~~a~~lGa-~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 190 DVSKGSSV---VIFGLGTVGLSVAQGAKLRGASQIIG--VDINPEKAEKAKTFGV-TDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEE--ECCCHHHHHHHHHcCC-cEEEcccccchHHHHHHHHHhCCC
Confidence 34455555 7777654 556666665 6764 666 3443455555555563 22221100 00 011225
Q ss_pred ccEEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEe
Q 047630 299 LDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDH 338 (392)
Q Consensus 299 FDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~ 338 (392)
+|+|+-.-.- . ..+.+..+.|++| |.+++..
T Consensus 264 ~d~vid~~G~------~---~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 264 ADYSFECVGD------T---GIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCEEEECCCC------h---HHHHHHHHhhccCCCEEEEEC
Confidence 8888754321 1 2567788899999 9997654
No 351
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.15 E-value=53 Score=30.07 Aligned_cols=44 Identities=20% Similarity=0.082 Sum_probs=34.1
Q ss_pred CCCcccEEEEcccccccCC---------chhHHHHHHHHHHcccCCcEEEEEe
Q 047630 295 FDNTLDIVHSMHVLSNWIP---------TTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~---------~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+..|+|+.+.+++.+.- .++++.++..+..+|+|+-.+++..
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 4567899999999976432 3467788888889999998887665
No 352
>PTZ00357 methyltransferase; Provisional
Probab=56.13 E-value=37 Score=37.45 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=56.2
Q ss_pred EEEEEcCCcchHHHHHHH----cCCEEEEEecCCCchhHHHHHhc---------------CCccEEEeccCcCCCC----
Q 047630 239 IGLDIGGGVATFAVRMME----RNITIVTTSMNLNGPFNNFIASR---------------GVVPLYISISQRLPFF---- 295 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~----~g~~vvg~~iD~~a~~~~~aa~r---------------g~i~~~~~d~~~Lpf~---- 295 (392)
+|+=+|+|-|-+.....+ .+..+....++.+.+.......+ +.++++..|...+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 579999999985444333 34444333355543432221111 1267888888776432
Q ss_pred -------CCcccEEEEcccccccCCchhHHHHHHHHHHcccC----CcE
Q 047630 296 -------DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRP----GGL 333 (392)
Q Consensus 296 -------d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKP----GG~ 333 (392)
-+.+|+|++-. |-.|.+.+--.+-|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 23699999843 33345555555677888888876 776
No 353
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=55.88 E-value=36 Score=33.26 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=53.4
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEccc
Q 047630 232 KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHV 307 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~ 307 (392)
.++... .|+|.-.|.++..|.+++..|+++| - .++.+..-..|.+.....|...+.-.....|-.+|-.+
T Consensus 210 ~~~M~a---vDLGAcPGGWTyqLVkr~m~V~aVD--n-g~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 210 APGMWA---VDLGACPGGWTYQLVKRNMRVYAVD--N-GPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred cCCcee---eecccCCCccchhhhhcceEEEEec--c-chhhhhhhcccceeeeeccCcccccCCCCCceEEeehh
Confidence 344444 8999999999999999999999944 4 67777777778888877777666434566888888655
No 354
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=55.14 E-value=60 Score=31.23 Aligned_cols=82 Identities=16% Similarity=0.055 Sum_probs=49.1
Q ss_pred EEEcCCc--chHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 241 LDIGGGV--ATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 241 LDIGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
.=||+|. |.++..|.+.|.+|.++| .+....+.+.+.|.+.....+.+. -...|+|+..-. .....
T Consensus 4 ~IIG~G~mG~sla~~L~~~g~~V~~~d--~~~~~~~~a~~~g~~~~~~~~~~~----~~~aDlVilavp------~~~~~ 71 (279)
T PRK07417 4 GIVGLGLIGGSLGLDLRSLGHTVYGVS--RRESTCERAIERGLVDEASTDLSL----LKDCDLVILALP------IGLLL 71 (279)
T ss_pred EEEeecHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHCCCcccccCCHhH----hcCCCEEEEcCC------HHHHH
Confidence 4578875 567888888899998855 434444556566643322111111 134688876543 24445
Q ss_pred HHHHHHHHcccCCcEE
Q 047630 319 FLMFDIYRVLRPGGLF 334 (392)
Q Consensus 319 ~~L~el~RvLKPGG~l 334 (392)
.+++++...++++-++
T Consensus 72 ~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 72 PPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHhCCCCcEE
Confidence 6788888888776433
No 355
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=54.99 E-value=58 Score=31.89 Aligned_cols=95 Identities=12% Similarity=0.107 Sum_probs=49.6
Q ss_pred CCCCcccEEEEEcCCc-chHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEecc---CcC--CCCCCccc-EE
Q 047630 232 KKPGTIRIGLDIGGGV-ATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISIS---QRL--PFFDNTLD-IV 302 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~---~~L--pf~d~sFD-lV 302 (392)
.+++++ |=.|+|. |..+..+++ .|.. ++++ +.+....+.+.+.|.-.++.... ..+ -.....+| +|
T Consensus 159 ~~g~~v---lV~G~g~vG~~~~~~a~~~G~~~v~~~--~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 159 CEGKNV---IIIGAGTIGLLAIQCAVALGAKSVTAI--DINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred CCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEE--CCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEE
Confidence 344454 6667754 556666666 6776 5553 33344444554445312221111 000 01223567 55
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
+-.-. . ...+.+..+.|++||.+++..+.
T Consensus 234 ~d~~G--~-------~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 234 LETAG--V-------PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred EECCC--C-------HHHHHHHHHHhhcCCEEEEEccC
Confidence 43221 1 13678888999999999877544
No 356
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=54.70 E-value=1.4e+02 Score=30.55 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=61.8
Q ss_pred HHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHH-----HHHhcCCc-c-EEEeccCcCCC
Q 047630 222 DFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNN-----FIASRGVV-P-LYISISQRLPF 294 (392)
Q Consensus 222 ~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~-----~aa~rg~i-~-~~~~d~~~Lpf 294 (392)
+++|+++.+....+.| |=++=..|.++..++..++..+. | +-.++ +++.++.- . +..-+... ++
T Consensus 33 e~ll~~~~~~~~~~~~---~i~nd~fGal~~~l~~~~~~~~~-d----s~~~~~~~~~n~~~n~~~~~~~~~~~~~~-~~ 103 (378)
T PRK15001 33 EYLLQQLDDTEIRGPV---LILNDAFGALSCALAEHKPYSIG-D----SYISELATRENLRLNGIDESSVKFLDSTA-DY 103 (378)
T ss_pred HHHHHHHhhcccCCCE---EEEcCchhHHHHHHHhCCCCeee-h----HHHHHHHHHHHHHHcCCCcccceeecccc-cc
Confidence 4556666543322345 99999999999999977665432 2 22222 33334421 1 11111111 22
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
+ +.+|+|+.... .....++..+..+.++|.||+.++...-.
T Consensus 104 ~-~~~d~vl~~~P----K~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 104 P-QQPGVVLIKVP----KTLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred c-CCCCEEEEEeC----CCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 3 34898886433 23356677899999999999998766543
No 357
>PRK13699 putative methylase; Provisional
Probab=52.86 E-value=27 Score=32.88 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=32.9
Q ss_pred HHHHHHHhh--CCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHH
Q 047630 223 FSIDEVLAT--KKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFI 276 (392)
Q Consensus 223 ~lI~~ll~l--~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~a 276 (392)
.+++.++.. .+++. |||-=||+|+.+.+..+.|...+|++++ ....+.+
T Consensus 151 ~l~~~~i~~~s~~g~~---vlDpf~Gsgtt~~aa~~~~r~~~g~e~~--~~y~~~~ 201 (227)
T PRK13699 151 TSLQPLIESFTHPNAI---VLDPFAGSGSTCVAALQSGRRYIGIELL--EQYHRAG 201 (227)
T ss_pred HHHHHHHHHhCCCCCE---EEeCCCCCCHHHHHHHHcCCCEEEEecC--HHHHHHH
Confidence 344555432 23443 5999999999999988889888885544 4444433
No 358
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=52.13 E-value=1.6e+02 Score=29.93 Aligned_cols=99 Identities=17% Similarity=0.203 Sum_probs=51.1
Q ss_pred EEEEEcCCcch----HHHHHHHc--C-CEEEEEecCC----CchhHH--------HHHhcCCccEEEe-----ccCcC--
Q 047630 239 IGLDIGGGVAT----FAVRMMER--N-ITIVTTSMNL----NGPFNN--------FIASRGVVPLYIS-----ISQRL-- 292 (392)
Q Consensus 239 ~VLDIGCGtG~----~a~~La~~--g-~~vvg~~iD~----~a~~~~--------~aa~rg~i~~~~~-----d~~~L-- 292 (392)
.|+|+|.|.|. +...|+++ | +.+..|+++. +....+ ++..-| ++|... ..+.+
T Consensus 113 HIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lg-v~fef~~v~~~~~e~l~~ 191 (374)
T PF03514_consen 113 HIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLG-VPFEFHPVVVESLEDLDP 191 (374)
T ss_pred EEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcC-ccEEEEecccCchhhCCH
Confidence 45999999997 44455553 1 3443344554 222222 333335 344221 22222
Q ss_pred ---CCCCCcccEEEEcccccccCCch----hHHHHHHHHHHcccCCcEEEEEe
Q 047630 293 ---PFFDNTLDIVHSMHVLSNWIPTT----LLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 293 ---pf~d~sFDlV~s~~~l~~~~~~~----~l~~~L~el~RvLKPGG~lii~~ 338 (392)
...++..=+|.|.+.+|+..+.. .....+-...|.|+|.-.+++..
T Consensus 192 ~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~ 244 (374)
T PF03514_consen 192 SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQ 244 (374)
T ss_pred HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEee
Confidence 22334445566778888865321 11234455667889987665553
No 359
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=50.56 E-value=95 Score=30.10 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=50.2
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEecc---CcC-CC-CCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISIS---QRL-PF-FDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~---~~L-pf-~d~sFDlV 302 (392)
+.++..+ |-.|+|. |..+..+++ .|.. +++++ -+....+.+.+.+...++.... +.+ .. ....+|+|
T Consensus 157 ~~~~~~v---lI~g~g~~g~~~~~lA~~~G~~~v~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v 231 (343)
T cd08236 157 ITLGDTV---VVIGAGTIGLLAIQWLKILGAKRVIAVD--IDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLV 231 (343)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCEEEEEc--CCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEE
Confidence 4454455 7778655 666666666 6776 66633 3233334444444312221110 111 11 22348998
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+.... .. ..+..+.+.|+++|.++...
T Consensus 232 ld~~g------~~---~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 232 IEAAG------SP---ATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EECCC------CH---HHHHHHHHHhhcCCEEEEEc
Confidence 85421 11 25688899999999987654
No 360
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=50.44 E-value=1.4e+02 Score=28.49 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=49.0
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccc
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l 308 (392)
+.+++++ |=.|+|. |..+..+++ .|..+++++ .+....+.+.+.|. ..... .... ...+.+|+|+....-
T Consensus 153 ~~~g~~v---lV~g~g~vg~~~~q~a~~~G~~vi~~~--~~~~~~~~~~~~g~-~~~~~-~~~~-~~~~~~d~vid~~g~ 224 (319)
T cd08242 153 ITPGDKV---AVLGDGKLGLLIAQVLALTGPDVVLVG--RHSEKLALARRLGV-ETVLP-DEAE-SEGGGFDVVVEATGS 224 (319)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCeEEEEc--CCHHHHHHHHHcCC-cEEeC-cccc-ccCCCCCEEEECCCC
Confidence 3444444 5566532 344444444 688877743 32344445555553 22211 1111 234568988864211
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
...+..+.+.|+++|.++..
T Consensus 225 ---------~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 225 ---------PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ---------hHHHHHHHHHhhcCCEEEEE
Confidence 12567788899999999764
No 361
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=50.10 E-value=91 Score=30.50 Aligned_cols=96 Identities=18% Similarity=0.133 Sum_probs=51.3
Q ss_pred hCCCCcccEEEEEcCC-cchHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CC-CCCcccE
Q 047630 231 TKKPGTIRIGLDIGGG-VATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PF-FDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf-~d~sFDl 301 (392)
+.+++++ |=.|+| .|..+..+++ .|.. +++++ .+......+.+.|...++......+ .+ ....+|+
T Consensus 164 ~~~g~~v---lI~g~g~iG~~~~~lak~~G~~~v~~~~--~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 164 IKLGDTV---AVFGIGPVGLMAVAGARLRGAGRIIAVG--SRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 4444444 666765 3556666666 5774 66644 3233444445555322221111111 11 2345898
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
|+....- . ..+.++.+.|+++|.++.....
T Consensus 239 vld~~g~------~---~~~~~~~~~l~~~G~~v~~g~~ 268 (351)
T cd08285 239 VIIAGGG------Q---DTFEQALKVLKPGGTISNVNYY 268 (351)
T ss_pred EEECCCC------H---HHHHHHHHHhhcCCEEEEeccc
Confidence 8853221 1 3678899999999998765433
No 362
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=48.43 E-value=1.2e+02 Score=30.05 Aligned_cols=96 Identities=11% Similarity=0.037 Sum_probs=52.1
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEecc--Cc----C-CCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISIS--QR----L-PFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~--~~----L-pf~d~sFD 300 (392)
+.++..+ |=.|+|. |..+..+++ .|. .|+++ +.+....+.+.+.|....+.... .. + ....+.+|
T Consensus 183 ~~~g~~V---lV~G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 257 (368)
T TIGR02818 183 VEEGDTV---AVFGLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVD 257 (368)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCC
Confidence 4455555 6678754 566676776 677 67774 44344555555556322221110 00 0 01123578
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEeec
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDHFF 340 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~~~ 340 (392)
+|+-.-.- ...+.+..+.+++| |.+++....
T Consensus 258 ~vid~~G~---------~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 258 YSFECIGN---------VNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred EEEECCCC---------HHHHHHHHHHhhcCCCeEEEEecc
Confidence 88754221 13567778899886 988766543
No 363
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=47.93 E-value=23 Score=35.12 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHcccCCcEEEEEeecccccch
Q 047630 315 TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQL 346 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l 346 (392)
+.++.+|..+..+|+|||++++..|..-++.+
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLEDRi 248 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLEDRI 248 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHHHH
Confidence 56788999999999999999999988866665
No 364
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=47.52 E-value=1.2e+02 Score=29.93 Aligned_cols=95 Identities=13% Similarity=0.057 Sum_probs=50.0
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEecc--C----cC-CCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISIS--Q----RL-PFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~--~----~L-pf~d~sFD 300 (392)
+.++.++ |=+|+|. |..+..+++ .|. .+++++ .+....+.+.+.|.-.++.... . .+ ....+.+|
T Consensus 182 ~~~g~~v---lV~G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d 256 (365)
T cd08277 182 VEPGSTV---AVFGLGAVGLSAIMGAKIAGASRIIGVD--INEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVD 256 (365)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCC
Confidence 4455555 6667653 556666666 677 577744 3334444554445322221110 0 00 01124589
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEee
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDHF 339 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~~ 339 (392)
+|+-.-.- . ..+.+..+.|+++ |.+++...
T Consensus 257 ~vid~~g~------~---~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 257 YSFECTGN------A---DLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred EEEECCCC------h---HHHHHHHHhcccCCCEEEEEcC
Confidence 88853211 1 3567888899886 98876654
No 365
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=46.97 E-value=1e+02 Score=29.96 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=45.0
Q ss_pred EEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCCCCcccEEEEcccccccC
Q 047630 241 LDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFFDNTLDIVHSMHVLSNWI 312 (392)
Q Consensus 241 LDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~d~sFDlV~s~~~l~~~~ 312 (392)
|-.|+|. |..+..+++ .|. .++++ +-+......+.+.|...++......+ -...+.+|+|+..-.-
T Consensus 168 lV~g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~---- 241 (341)
T cd05281 168 LITGCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGN---- 241 (341)
T ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCC----
Confidence 5566643 556666666 576 56663 33233333334444311211111111 0123468988864321
Q ss_pred CchhHHHHHHHHHHcccCCcEEEEE
Q 047630 313 PTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 313 ~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
. ..+.++.+.|+++|.++..
T Consensus 242 --~---~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 242 --P---KAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred --H---HHHHHHHHHhccCCEEEEE
Confidence 1 2567888999999998754
No 366
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=46.89 E-value=1.1e+02 Score=30.33 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=47.9
Q ss_pred CCCCcccEEEEEcCC-cchHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEeccCcC------CCCCCcccEE
Q 047630 232 KKPGTIRIGLDIGGG-VATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISISQRL------PFFDNTLDIV 302 (392)
Q Consensus 232 ~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L------pf~d~sFDlV 302 (392)
.++.++ |=.|+| .|..+..+++ .|.. +++++ .+......+.+.+...++......+ ...+..+|+|
T Consensus 186 ~~g~~V---lI~g~g~vG~~~~~lak~~G~~~vi~~~--~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~v 260 (367)
T cd08263 186 RPGETV---AVIGVGGVGSSAIQLAKAFGASPIIAVD--VRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVV 260 (367)
T ss_pred CCCCEE---EEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEE
Confidence 444444 444654 4556666666 6776 66643 2233334444445322222111111 1124568998
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+..-.- . ..+.++.+.|+++|.++..
T Consensus 261 ld~vg~------~---~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 261 VEALGK------P---ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred EEeCCC------H---HHHHHHHHHHhcCCEEEEE
Confidence 854221 1 2567888999999998755
No 367
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=46.33 E-value=1.3e+02 Score=29.42 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=58.1
Q ss_pred HHHHHHhhCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCC-C
Q 047630 224 SIDEVLATKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFF-D 296 (392)
Q Consensus 224 lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~-d 296 (392)
++.+.-.++++..| .|--...|.|..+-.|++ .+..++++. + .+...+.+.+.|.-..+....+++ .+. .
T Consensus 137 ll~e~y~vkpGhtV-lvhaAAGGVGlll~Ql~ra~~a~tI~~a-s-TaeK~~~akenG~~h~I~y~~eD~v~~V~kiTng 213 (336)
T KOG1197|consen 137 LLFEAYNVKPGHTV-LVHAAAGGVGLLLCQLLRAVGAHTIATA-S-TAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNG 213 (336)
T ss_pred HHHHhcCCCCCCEE-EEEeccccHHHHHHHHHHhcCcEEEEEe-c-cHHHHHHHHhcCCcceeeccchhHHHHHHhccCC
Confidence 33444445666555 334566788998888887 688877744 2 245556677777422332222222 222 2
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
...|++.-+-.- ..+..-...|||+|.++-.
T Consensus 214 KGVd~vyDsvG~----------dt~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 214 KGVDAVYDSVGK----------DTFAKSLAALKPMGKMVSF 244 (336)
T ss_pred CCceeeeccccc----------hhhHHHHHHhccCceEEEe
Confidence 346766643322 2356677899999998543
No 368
>PLN02494 adenosylhomocysteinase
Probab=45.73 E-value=1e+02 Score=32.62 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=49.8
Q ss_pred EEEEcCCc-chH-HHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhH
Q 047630 240 GLDIGGGV-ATF-AVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLL 317 (392)
Q Consensus 240 VLDIGCGt-G~~-a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l 317 (392)
|+=+|+|. |.. +..+...|..|++++.|. .....+...|. .+. +.++. -...|+|+..-.-.+.
T Consensus 257 VvViGyG~IGr~vA~~aka~Ga~VIV~e~dp--~r~~eA~~~G~-~vv--~leEa---l~~ADVVI~tTGt~~v------ 322 (477)
T PLN02494 257 AVICGYGDVGKGCAAAMKAAGARVIVTEIDP--ICALQALMEGY-QVL--TLEDV---VSEADIFVTTTGNKDI------ 322 (477)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeCCc--hhhHHHHhcCC-eec--cHHHH---HhhCCEEEECCCCccc------
Confidence 48888886 443 333334788888865543 33334444442 221 11111 1247999874332221
Q ss_pred HHHHHHHHHcccCCcEEEEEeeccc
Q 047630 318 HFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 318 ~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
+..+..+.+|+||+|+....+..
T Consensus 323 --I~~e~L~~MK~GAiLiNvGr~~~ 345 (477)
T PLN02494 323 --IMVDHMRKMKNNAIVCNIGHFDN 345 (477)
T ss_pred --hHHHHHhcCCCCCEEEEcCCCCC
Confidence 34778889999999988865443
No 369
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.53 E-value=1.7e+02 Score=29.55 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=58.3
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cC-CEEEEEecCCCchhHHHHHhcCCccEEEeccC-----cC------CCC
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RN-ITIVTTSMNLNGPFNNFIASRGVVPLYISISQ-----RL------PFF 295 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g-~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~-----~L------pf~ 295 (392)
+.+++.++ |=+|+|. |..+...++ .| .+|+.+| +.+...+.+.+-|. ..+..+.. .+ -+.
T Consensus 166 ~vk~Gs~v---LV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga-~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 166 GVKKGSKV---LVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGA-TVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred CcccCCeE---EEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCC-eEEeeccccccHHHHHHHHHhhcc
Confidence 34556666 9999997 666666666 34 4677744 54456666666663 22222111 10 122
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
+..+|+++....++. .++-....+|.||.+++..+.
T Consensus 240 ~~~~d~~~dCsG~~~---------~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 240 KKQPDVTFDCSGAEV---------TIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred ccCCCeEEEccCchH---------HHHHHHHHhccCCEEEEeccC
Confidence 345888876655432 567778899999998777653
No 370
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=45.15 E-value=1.2e+02 Score=29.45 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=46.1
Q ss_pred EEEcCC-cchHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEec-cCc----C--CCCCCcccEEEEcccccc
Q 047630 241 LDIGGG-VATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISI-SQR----L--PFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 241 LDIGCG-tG~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d-~~~----L--pf~d~sFDlV~s~~~l~~ 310 (392)
|-.|+| .|..+..+++ .|.. ++++ +-+......+.+.+. ..+... ... + ....+.+|+|+....-
T Consensus 166 lI~~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~-~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g~-- 240 (340)
T TIGR00692 166 LVTGAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGA-TYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGA-- 240 (340)
T ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCC-cEEEcccccCHHHHHHHhcCCCCCCEEEECCCC--
Confidence 445654 3556666666 6776 6664 332333334444453 222211 111 1 1123568998864211
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
. ..+.++.+.|+++|.++...
T Consensus 241 ----~---~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 241 ----P---KALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred ----H---HHHHHHHHhhcCCCEEEEEc
Confidence 1 35788899999999987654
No 371
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=44.46 E-value=1.2e+02 Score=29.88 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=49.2
Q ss_pred hCCCCcccEEEEEcCC-cchHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEeccCc----C-C-CCCCcccE
Q 047630 231 TKKPGTIRIGLDIGGG-VATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISISQR----L-P-FFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~----L-p-f~d~sFDl 301 (392)
+.++.++ |-.|+| .|..+..+++ .|.. +++++ .+....+.+.+.|...++...... + . ...+.+|+
T Consensus 180 ~~~g~~v---LI~g~g~vG~a~i~lak~~G~~~Vi~~~--~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~ 254 (363)
T cd08279 180 VRPGDTV---AVIGCGGVGLNAIQGARIAGASRIIAVD--PVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADY 254 (363)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCE
Confidence 3444444 666765 4566666666 6775 66643 223344444444531222111111 1 1 12356898
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
++..-.- . ..+.++.+.|+++|+++..
T Consensus 255 vld~~~~------~---~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 255 AFEAVGR------A---ATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EEEcCCC------h---HHHHHHHHHhhcCCeEEEE
Confidence 8753321 1 2568889999999998754
No 372
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=44.23 E-value=42 Score=30.47 Aligned_cols=113 Identities=21% Similarity=0.273 Sum_probs=55.8
Q ss_pred EEcCCc-c-hHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEec----------cCcCCCC------CCcccEEE
Q 047630 242 DIGGGV-A-TFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISI----------SQRLPFF------DNTLDIVH 303 (392)
Q Consensus 242 DIGCGt-G-~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d----------~~~Lpf~------d~sFDlV~ 303 (392)
=+|.|. | ..+..|++.|.+|+|+|+|. ...+ ...+|..++.... ..++-+. -...|+++
T Consensus 5 ViGlGyvGl~~A~~lA~~G~~V~g~D~~~--~~v~-~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~ 81 (185)
T PF03721_consen 5 VIGLGYVGLPLAAALAEKGHQVIGVDIDE--EKVE-ALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVF 81 (185)
T ss_dssp EE--STTHHHHHHHHHHTTSEEEEE-S-H--HHHH-HHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEE
T ss_pred EECCCcchHHHHHHHHhCCCEEEEEeCCh--HHHH-HHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEE
Confidence 355554 3 26677788999999966543 3332 2223322221100 0111110 12356655
Q ss_pred Ec-cccccc---CCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcC
Q 047630 304 SM-HVLSNW---IPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVG 358 (392)
Q Consensus 304 s~-~~l~~~---~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aG 358 (392)
.. .....- .+-..++.+++.+.+.|++|-.+++....... ...+.+..++++.+
T Consensus 82 I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG-tt~~~~~~ile~~~ 139 (185)
T PF03721_consen 82 ICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG-TTEELLKPILEKRS 139 (185)
T ss_dssp E----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT-HHHHHHHHHHHHHC
T ss_pred EecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe-eehHhhhhhhhhhc
Confidence 33 222211 12245788999999999997777776644432 23345777787765
No 373
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=44.07 E-value=1.2e+02 Score=30.02 Aligned_cols=97 Identities=16% Similarity=0.103 Sum_probs=51.7
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEecc--CcC-----CCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISIS--QRL-----PFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~--~~L-----pf~d~sF 299 (392)
.+.+++.+ |=.|+|. |..+..+++ .|. .++++ +.+....+.+.+-|...++.... ..+ ....+.+
T Consensus 184 ~~~~g~~V---lV~G~g~vG~~a~q~ak~~G~~~vi~~--~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 184 KVKKGSTV---AIFGLGAVGLAVAEGARIRGASRIIGV--DLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCC
Confidence 34455555 6667642 455566665 677 67774 34344555555556322221111 000 1122358
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEeec
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDHFF 340 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~~~ 340 (392)
|+|+-.-.- ...+....+.+++| |.+++....
T Consensus 259 d~vid~~G~---------~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 259 DYSFECTGN---------IDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred CEEEECCCC---------hHHHHHHHHHhhcCCCEEEEECcC
Confidence 888753211 13567778899996 998776543
No 374
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=43.21 E-value=1.5e+02 Score=29.03 Aligned_cols=95 Identities=13% Similarity=0.166 Sum_probs=49.9
Q ss_pred hhCCCCcccEEEEEcCC-cchHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEe-ccCc----C-CC-CCCcc
Q 047630 230 ATKKPGTIRIGLDIGGG-VATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYIS-ISQR----L-PF-FDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~-d~~~----L-pf-~d~sF 299 (392)
.+.++..+ |=.|+| .|..+..+++ .|. .+++++ .+....+.+.+.|. ..... ...+ + .. ..+.+
T Consensus 169 ~~~~g~~v---lI~g~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga-~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 169 GFKPGDTA---LVLGAGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGA-TIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCC-CEEECCCccCHHHHHHHHhCCCCC
Confidence 34444444 555653 3555566665 677 676643 32344444444453 22221 1111 1 01 22348
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
|+|+-.... . ..+.++.+.|++||.++....
T Consensus 243 d~vid~~g~------~---~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAGV------Q---ATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCCC------H---HHHHHHHHhccCCCEEEEEcc
Confidence 988864321 1 256888899999999876543
No 375
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=43.05 E-value=2.1e+02 Score=27.45 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=50.9
Q ss_pred hCCCCcccEEEEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCc----C--CCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQR----L--PFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~----L--pf~d~sFDlV 302 (392)
+.++..+ |=.|+| .|..+..+++ .|..++.++.+-+......+.+.|. ..+...... + -.....+|++
T Consensus 162 ~~~g~~v---lI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~l~~~~~~~~vd~v 237 (306)
T cd08258 162 IRPGDTV---VVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGA-DAVNGGEEDLAELVNEITDGDGADVV 237 (306)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCC-cccCCCcCCHHHHHHHHcCCCCCCEE
Confidence 3444444 434542 3455566665 6888766544332223334444553 211111111 0 0123458888
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
+....- ...+....+.|+++|.++......
T Consensus 238 ld~~g~---------~~~~~~~~~~l~~~G~~v~~g~~~ 267 (306)
T cd08258 238 IECSGA---------VPALEQALELLRKGGRIVQVGIFG 267 (306)
T ss_pred EECCCC---------hHHHHHHHHHhhcCCEEEEEcccC
Confidence 764311 136788899999999998765543
No 376
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=42.83 E-value=1.2e+02 Score=26.19 Aligned_cols=67 Identities=15% Similarity=0.077 Sum_probs=49.2
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccccc--chHHHHHHHHHHcCCeEEEEE
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGA--QLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~--~l~~~l~~ll~~aGf~~i~w~ 365 (392)
.++..|+|+.-+- ..+.++...|-.+.+.|..+|.+|+........ --+.++.+....+|+...+-.
T Consensus 42 ~ddvvD~vllWwR----~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~~~~I~eaA~taGL~~t~~~ 110 (127)
T PF11253_consen 42 YDDVVDVVLLWWR----DDDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVEPSDIREAAPTAGLVQTKSC 110 (127)
T ss_pred ccccccEEEEEEE----CCcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCCHHHHHHHHhhcCCeeeeee
Confidence 3556788876443 344577889999999999999999997543222 226678889999998877655
No 377
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=42.61 E-value=1.7e+02 Score=30.15 Aligned_cols=89 Identities=11% Similarity=-0.003 Sum_probs=51.5
Q ss_pred CCCcccEEEEEcCCc-chHHHHHH-HcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccc
Q 047630 233 KPGTIRIGLDIGGGV-ATFAVRMM-ERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 233 ~~~~ir~VLDIGCGt-G~~a~~La-~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
.+.++ +=+|+|. |...+..+ ..|..|++++.|. .....+...|. .. .+.++. . ...|+|++.-.-
T Consensus 194 ~Gk~V---vViG~G~IG~~vA~~ak~~Ga~ViV~d~dp--~r~~~A~~~G~-~v--~~leea-l--~~aDVVItaTG~-- 260 (406)
T TIGR00936 194 AGKTV---VVAGYGWCGKGIAMRARGMGARVIVTEVDP--IRALEAAMDGF-RV--MTMEEA-A--KIGDIFITATGN-- 260 (406)
T ss_pred CcCEE---EEECCCHHHHHHHHHHhhCcCEEEEEeCCh--hhHHHHHhcCC-Ee--CCHHHH-H--hcCCEEEECCCC--
Confidence 34445 8899987 55444333 3788998866554 33334444452 22 121211 1 246988764321
Q ss_pred cCCchhHHHHHH-HHHHcccCCcEEEEEeecc
Q 047630 311 WIPTTLLHFLMF-DIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 311 ~~~~~~l~~~L~-el~RvLKPGG~lii~~~~~ 341 (392)
. .++. +....+|+|++++....+.
T Consensus 261 ----~---~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 261 ----K---DVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred ----H---HHHHHHHHhcCCCCcEEEEECCCC
Confidence 1 2444 5888999999998876554
No 378
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=42.54 E-value=1.5e+02 Score=29.29 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=49.6
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~d~sFDlV 302 (392)
+.+++.+ |=.|+|. |..+..+++ .|. .+++++ .+......+.+.+...++......+ ......+|+|
T Consensus 184 ~~~g~~v---lI~g~g~vG~~~~~la~~~G~~~v~~~~--~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 184 PRPGSSI---AVFGAGAVGLAAVMAAKIAGCTTIIAVD--IVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEE
Confidence 3444444 6667643 556666666 677 466644 3233434444444312221111110 0113458988
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+-.-.- . ..+.++.+.|+++|.++...
T Consensus 259 ld~~g~------~---~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 259 LDTTGV------P---AVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EECCCC------c---HHHHHHHHHhccCCEEEEeC
Confidence 854211 1 25688899999999987653
No 379
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=42.06 E-value=1.6e+02 Score=29.19 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=51.9
Q ss_pred hhCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccC--cC-----CCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQ--RL-----PFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~--~L-----pf~d~sF 299 (392)
.+.++..+ |=+|+|. |..+..+++ .|. .+++++ .+....+.+.+.|.-.++..... .+ ....+.+
T Consensus 183 ~~~~g~~V---lV~G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 183 KVEPGSTV---AVFGLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCC
Confidence 34455555 6667643 556666666 677 577744 33344455555553222211110 00 0112368
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCC-cEEEEEeec
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPG-GLFWLDHFF 340 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPG-G~lii~~~~ 340 (392)
|+|+-.-. . ...+.+..+.|+++ |.++.....
T Consensus 258 d~vid~~g--~-------~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 258 DYTFECIG--N-------VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred cEEEECCC--C-------hHHHHHHHHhhccCCCeEEEEccC
Confidence 98875322 1 13567788899997 988776543
No 380
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=41.80 E-value=38 Score=30.19 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=47.0
Q ss_pred CcccEEEEEcCCcchHHHHHHH--cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCc----CCCCCCcccEEEEcccc
Q 047630 235 GTIRIGLDIGGGVATFAVRMME--RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQR----LPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~----Lpf~d~sFDlV~s~~~l 308 (392)
+.| ||+|=|.|+.--+|.+ .+-.++++|-.+.+..+..-.+ -.++++++.+ +++.....-++|+-...
T Consensus 30 G~V---lElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~---~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~ 103 (160)
T PF12692_consen 30 GPV---LELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPE---EDLILGDIRETLPALARFGAGAALAHADIGT 103 (160)
T ss_dssp S-E---EEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---G---GGEEES-HHHHHHHHHHH-S-EEEEEE----
T ss_pred Cce---EEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCch---HheeeccHHHHhHHHHhcCCceEEEEeecCC
Confidence 455 9999999999899988 4667777554432211111111 2466776443 23344556677776655
Q ss_pred cccCCchh-HHHHHHHHHHcccCCcEEEEEe
Q 047630 309 SNWIPTTL-LHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 309 ~~~~~~~~-l~~~L~el~RvLKPGG~lii~~ 338 (392)
++-..+.. ...+=.-+..+|.|||+++-..
T Consensus 104 g~~~~d~a~a~~lspli~~~la~gGi~vS~~ 134 (160)
T PF12692_consen 104 GDKEKDDATAAWLSPLIAPVLAPGGIMVSGQ 134 (160)
T ss_dssp S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 43211111 1122334578999999987664
No 381
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=41.43 E-value=2.1e+02 Score=27.78 Aligned_cols=111 Identities=16% Similarity=0.120 Sum_probs=55.8
Q ss_pred EEEcCCc--chHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 241 LDIGGGV--ATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 241 LDIGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
-=||+|. ..++..|.+.+..+++. |.+....+.+.+.|. .. ..+.+++.-.....|+|+..- .+.+..+
T Consensus 4 g~IGlG~mG~~mA~~L~~~g~~v~v~--dr~~~~~~~~~~~g~-~~-~~s~~~~~~~~~~advVi~~v-----p~~~~~~ 74 (299)
T PRK12490 4 GLIGLGKMGGNMAERLREDGHEVVGY--DVNQEAVDVAGKLGI-TA-RHSLEELVSKLEAPRTIWVMV-----PAGEVTE 74 (299)
T ss_pred EEEcccHHHHHHHHHHHhCCCEEEEE--ECCHHHHHHHHHCCC-ee-cCCHHHHHHhCCCCCEEEEEe-----cCchHHH
Confidence 3467665 33667777788888874 443344444444442 11 122222110011247776532 2223556
Q ss_pred HHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEE
Q 047630 319 FLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
.++.++...+++|-+ +++.-...... ...+.+.+++.|...+
T Consensus 75 ~v~~~i~~~l~~g~i-vid~st~~~~~-~~~~~~~~~~~g~~~v 116 (299)
T PRK12490 75 SVIKDLYPLLSPGDI-VVDGGNSRYKD-DLRRAEELAERGIHYV 116 (299)
T ss_pred HHHHHHhccCCCCCE-EEECCCCCchh-HHHHHHHHHHcCCeEE
Confidence 777888777877654 44432221222 2335566777775443
No 382
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=40.55 E-value=2.7e+02 Score=24.89 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhCC-CCcccEEEEEcCCcchHHHHH-HHcCCEEEEEecCCCchhHHHHHhcCCccEEEecc---CcCC-C
Q 047630 221 LDFSIDEVLATKK-PGTIRIGLDIGGGVATFAVRM-MERNITIVTTSMNLNGPFNNFIASRGVVPLYISIS---QRLP-F 294 (392)
Q Consensus 221 ~~~lI~~ll~l~~-~~~ir~VLDIGCGtG~~a~~L-a~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~---~~Lp-f 294 (392)
++.+.+.+.+... +.+| +=|||=+-..+..- ...+..+...|+|. -+... .+. .|..=|. +.+| .
T Consensus 12 ~~~l~~~l~~~~~~~~~i---aclstPsl~~~l~~~~~~~~~~~Lle~D~--RF~~~---~~~-~F~fyD~~~p~~~~~~ 82 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRI---ACLSTPSLYEALKKESKPRIQSFLLEYDR--RFEQF---GGD-EFVFYDYNEPEELPEE 82 (162)
T ss_pred HHHHHHHHHHhcCCCCEE---EEEeCcHHHHHHHhhcCCCccEEEEeecc--hHHhc---CCc-ceEECCCCChhhhhhh
Confidence 6667777765432 2344 88988776654443 22456677755543 22221 111 2333332 2233 1
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
..++||+|++--.+ ..++-+.++..-+.-.+|+++.+++.. ...+.+.+.+++ |++...+...-
T Consensus 83 l~~~~d~vv~DPPF---l~~ec~~k~a~ti~~L~k~~~kii~~T----g~~~~~~~~~ll---~~~~~~f~p~h 146 (162)
T PF10237_consen 83 LKGKFDVVVIDPPF---LSEECLTKTAETIRLLLKPGGKIILCT----GEEMEELIKKLL---GLRMCDFQPEH 146 (162)
T ss_pred cCCCceEEEECCCC---CCHHHHHHHHHHHHHHhCccceEEEec----HHHHHHHHHHHh---CeeEEeEEecc
Confidence 25799999998766 444555566677777778888887664 233334344444 77777776443
No 383
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=40.44 E-value=1.8e+02 Score=27.25 Aligned_cols=93 Identities=16% Similarity=0.082 Sum_probs=49.1
Q ss_pred hCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----C-CCCCcccE
Q 047630 231 TKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----P-FFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----p-f~d~sFDl 301 (392)
+.++..+ |-.|| +.|..+..+++ .|..++.++ .+......+.+.+.-..+......+ . .....+|+
T Consensus 137 ~~~~~~v---li~g~~~~~g~~~~~~a~~~g~~v~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~ 211 (323)
T cd08241 137 LQPGETV---LVLGAAGGVGLAAVQLAKALGARVIAAA--SSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDV 211 (323)
T ss_pred CCCCCEE---EEEcCCchHHHHHHHHHHHhCCEEEEEe--CCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEE
Confidence 3344444 88887 34555555555 688887744 3234444454455311221111111 0 12345888
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
++....- ..+..+.+.++++|.++...
T Consensus 212 v~~~~g~----------~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 212 VYDPVGG----------DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred EEECccH----------HHHHHHHHhhccCCEEEEEc
Confidence 8754321 13466778899999886543
No 384
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=39.45 E-value=49 Score=32.91 Aligned_cols=70 Identities=14% Similarity=0.023 Sum_probs=37.4
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHHc--CCEEEEEecCCCchhHHHHHhc-----CCccEEEeccCcCC-----C-CCC
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMMER--NITIVTTSMNLNGPFNNFIASR-----GVVPLYISISQRLP-----F-FDN 297 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~~--g~~vvg~~iD~~a~~~~~aa~r-----g~i~~~~~d~~~Lp-----f-~d~ 297 (392)
..+++.+ +|.=-|.|..+..+.+. +..++|+|.| ....+.+.++ +.+.++.++...+. . .-.
T Consensus 18 ~~~~g~~---vD~T~G~GGHS~aiL~~~~~~~li~~DrD--~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~~ 92 (310)
T PF01795_consen 18 PKPGGIY---VDCTFGGGGHSKAILEKLPNGRLIGIDRD--PEALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGIN 92 (310)
T ss_dssp --TT-EE---EETT-TTSHHHHHHHHT-TT-EEEEEES---HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTTS
T ss_pred cCCCceE---EeecCCcHHHHHHHHHhCCCCeEEEecCC--HHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCCC
Confidence 3444544 99999999999999984 4677775544 3444444433 22455555544331 1 234
Q ss_pred cccEEEEc
Q 047630 298 TLDIVHSM 305 (392)
Q Consensus 298 sFDlV~s~ 305 (392)
.+|.|+.-
T Consensus 93 ~~dgiL~D 100 (310)
T PF01795_consen 93 KVDGILFD 100 (310)
T ss_dssp -EEEEEEE
T ss_pred ccCEEEEc
Confidence 56777653
No 385
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=39.24 E-value=51 Score=33.63 Aligned_cols=91 Identities=10% Similarity=0.107 Sum_probs=55.0
Q ss_pred EEEEEcCCcchHHHHHHHc--C-CEEEEEecCCCchhHH----HHHhcCC----ccEEEeccCcCC-CCCCcccEEEEcc
Q 047630 239 IGLDIGGGVATFAVRMMER--N-ITIVTTSMNLNGPFNN----FIASRGV----VPLYISISQRLP-FFDNTLDIVHSMH 306 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~~--g-~~vvg~~iD~~a~~~~----~aa~rg~----i~~~~~d~~~Lp-f~d~sFDlV~s~~ 306 (392)
++||.=+|+|.=+.+.+.. + ..|+.-|+|. ...+ ++..+++ +.+...|+..+= ...+.||+|-.-
T Consensus 52 ~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~--~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELAGVDKVTANDISP--EAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-SSECEEEEEES-H--HHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred eEEeccccccHHHHHHHHHcCCCCEEEEecCCH--HHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 3499999999988777764 3 4677756554 3333 2333332 345566655532 256789998742
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.+..+. .+|..+.+.+|.||+|.++.
T Consensus 129 ---PfGSp~---pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 ---PFGSPA---PFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----SS--H---HHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCCCcc---HhHHHHHHHhhcCCEEEEec
Confidence 222223 48999999999999998885
No 386
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=39.24 E-value=1.5e+02 Score=28.83 Aligned_cols=86 Identities=15% Similarity=0.080 Sum_probs=47.3
Q ss_pred EEEEEcCCc--chHHHHHHHcCC--EEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCc
Q 047630 239 IGLDIGGGV--ATFAVRMMERNI--TIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPT 314 (392)
Q Consensus 239 ~VLDIGCGt--G~~a~~La~~g~--~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~ 314 (392)
.|.=||+|. +.++..+.+.|. .|++++ .+....+.+.+.|.......+.... -...|+|+..-..
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~g~~~~V~~~d--r~~~~~~~a~~~g~~~~~~~~~~~~---~~~aDvViiavp~------ 76 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRLGLAGEIVGAD--RSAETRARARELGLGDRVTTSAAEA---VKGADLVILCVPV------ 76 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhcCCCcEEEEEE--CCHHHHHHHHhCCCCceecCCHHHH---hcCCCEEEECCCH------
Confidence 347788886 346666776764 677744 4334444455555321111221111 1346888765432
Q ss_pred hhHHHHHHHHHHcccCCcEEE
Q 047630 315 TLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~li 335 (392)
.....++.++...+++|..++
T Consensus 77 ~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 77 GASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred HHHHHHHHHHHhhCCCCCEEE
Confidence 233457778878888887553
No 387
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=38.79 E-value=1.8e+02 Score=29.52 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=54.0
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEecc-Cc----C-C-CCCCcccE
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISIS-QR----L-P-FFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~-~~----L-p-f~d~sFDl 301 (392)
+.+++.+ |=.|+|. |..+..+++ .|..++. ..|.+....+.+.+.|. ..+.... .. + . .....+|+
T Consensus 183 ~~~g~~V---lV~G~G~iG~~aiqlAk~~Ga~~vi-~~d~~~~r~~~a~~~Ga-~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 183 VGPGSTV---YIAGAGPVGLAAAASAQLLGAAVVI-VGDLNPARLAQARSFGC-ETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCceEE-EeCCCHHHHHHHHHcCC-eEEecCCcccHHHHHHHHcCCCCCcE
Confidence 4444444 4467653 556666666 6776443 23443345555556663 3222110 01 1 0 12245898
Q ss_pred EEEcccccc--c---CCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 302 VHSMHVLSN--W---IPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 302 V~s~~~l~~--~---~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
|+-.-.-.. + ....+....+.+..+++|+||.+++.-.+
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 885433210 0 00011123688899999999999886654
No 388
>KOG1771 consensus GPI-alpha-mannosyltransferase III (GPI10/PIG-B) involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=38.52 E-value=31 Score=35.37 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=35.7
Q ss_pred hhccChhhhhccccccccCCCCChHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCCCCCC
Q 047630 102 ACTLFPDELRRYMSYKVNASCPDDELLAQKLLLKGCEPLPRRRCRAVGPSHYIEPYPLPKS 162 (392)
Q Consensus 102 ~c~~~~~~~~~~m~y~~~~~Cp~~~~l~~~~~~~~C~~~~~r~c~~~~p~~y~~p~p~p~s 162 (392)
.|+.+|- -+++ .||+-.+ -.-|||--.+.-.|.+-.-|.||..|-++
T Consensus 360 PCHsTPy-----yShi---H~~~~m~------fltC~P~~~k~e~desD~fy~np~~f~~~ 406 (464)
T KOG1771|consen 360 PCHSTPY-----YSHI---HRPFPMR------FLTCEPFLEKKELDESDRFYENPLTFIHK 406 (464)
T ss_pred EccCCcc-----cchh---cCcchhh------hccCCCccCccccchhhhhhhChHhhhhc
Confidence 4888886 5677 6887654 66799866666688888899999988743
No 389
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=38.50 E-value=51 Score=32.47 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=50.5
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccC----cC----C-C-CCCc
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQ----RL----P-F-FDNT 298 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~----~L----p-f-~d~s 298 (392)
+.++.++ |=+|+|. |..+..+++ .|..+++++ .+....+.+.+.|. ........ .+ . + ....
T Consensus 164 ~~~g~~V---lV~G~G~vG~~a~~~a~~~G~~vi~~~--~~~~~~~~~~~~Ga-~~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 164 LKKGDLV---IVIGAGGVGGYMVQTAKAMGAAVVAID--IDPEKLEMMKGFGA-DLTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCeEEEEc--CCHHHHHHHHHhCC-ceEecCccccHHHHHHHHHhhcccCC
Confidence 3444445 8888865 666666666 678877744 33445555555553 22221100 00 0 0 1123
Q ss_pred cc----EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 299 LD----IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 299 FD----lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
+| +|+-.-. . ...+....+.|++||++++....
T Consensus 238 ~d~~~d~v~d~~g--~-------~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 238 LRSTGWKIFECSG--S-------KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CCCCcCEEEECCC--C-------hHHHHHHHHHHhcCCeEEEECcC
Confidence 44 4442111 1 13567778899999999776543
No 390
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=38.14 E-value=34 Score=34.02 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=37.9
Q ss_pred ccEEEeccCcCCCCC-------CcccEEEEccccccc--CCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 282 VPLYISISQRLPFFD-------NTLDIVHSMHVLSNW--IPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 282 i~~~~~d~~~Lpf~d-------~sFDlV~s~~~l~~~--~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
+.|.+.|+-.+..++ .+.|+|...+.+.-. .....-.++|..+..+++||-+|.|.+-
T Consensus 177 ~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 177 VSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred eeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 456666665554321 246777766666422 1233445799999999999999988874
No 391
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=37.89 E-value=1.1e+02 Score=30.71 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=45.8
Q ss_pred EEEcCCc-chHHHHHHH-cCCEEEEEecCCCchh-HHHHHhcCCccEEEecc--CcCCCCCCcccEEEEcccccccCCch
Q 047630 241 LDIGGGV-ATFAVRMME-RNITIVTTSMNLNGPF-NNFIASRGVVPLYISIS--QRLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 241 LDIGCGt-G~~a~~La~-~g~~vvg~~iD~~a~~-~~~aa~rg~i~~~~~d~--~~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
|=.|+|. |..+..+++ .|..+++++.+ .+. .+.+.+.|. ....... +.+.-..+.+|+|+-.-.- .
T Consensus 183 lV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa-~~~i~~~~~~~v~~~~~~~D~vid~~G~------~ 253 (375)
T PLN02178 183 GVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGA-DSFLVTTDSQKMKEAVGTMDFIIDTVSA------E 253 (375)
T ss_pred EEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCC-cEEEcCcCHHHHHHhhCCCcEEEECCCc------H
Confidence 6667653 556666766 68887775432 222 233434453 2222110 0110001247888754221 1
Q ss_pred hHHHHHHHHHHcccCCcEEEEEe
Q 047630 316 LLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+.+..+.|++||.++...
T Consensus 254 ---~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 254 ---HALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ---HHHHHHHHhhcCCCEEEEEc
Confidence 25678889999999997654
No 392
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=37.56 E-value=2.5e+02 Score=26.93 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=54.5
Q ss_pred EEEcCCc-c-hHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 241 LDIGGGV-A-TFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 241 LDIGCGt-G-~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
-=||+|. | .++..+++.|..+++. |.+....+.+.+.+. . ...+...+. ...|+|+..-.- ....+
T Consensus 6 gviG~G~mG~~~a~~l~~~g~~v~~~--d~~~~~~~~~~~~g~-~-~~~~~~e~~---~~~d~vi~~vp~-----~~~~~ 73 (296)
T PRK11559 6 GFIGLGIMGKPMSKNLLKAGYSLVVY--DRNPEAVAEVIAAGA-E-TASTAKAVA---EQCDVIITMLPN-----SPHVK 73 (296)
T ss_pred EEEccCHHHHHHHHHHHHCCCeEEEE--cCCHHHHHHHHHCCC-e-ecCCHHHHH---hcCCEEEEeCCC-----HHHHH
Confidence 5578886 4 4778888888888874 443344444444442 1 112222211 246888875321 12233
Q ss_pred HHH---HHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeE
Q 047630 319 FLM---FDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 319 ~~L---~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~ 361 (392)
.++ .++...+++|-+++ +. -.......+.+.+.+++.|...
T Consensus 74 ~v~~~~~~~~~~~~~g~iii-d~-st~~~~~~~~l~~~~~~~g~~~ 117 (296)
T PRK11559 74 EVALGENGIIEGAKPGTVVI-DM-SSIAPLASREIAAALKAKGIEM 117 (296)
T ss_pred HHHcCcchHhhcCCCCcEEE-EC-CCCCHHHHHHHHHHHHHcCCcE
Confidence 343 34566677765554 32 2222222334566666666543
No 393
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=36.83 E-value=45 Score=35.02 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=49.8
Q ss_pred CCCcccEEEEEcCCc-ch-HHHHHHHcCCEEE-EE---ecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcc
Q 047630 233 KPGTIRIGLDIGGGV-AT-FAVRMMERNITIV-TT---SMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMH 306 (392)
Q Consensus 233 ~~~~ir~VLDIGCGt-G~-~a~~La~~g~~vv-g~---~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~ 306 (392)
.+.+| +=||||. |. .+.-|...|+.|+ |. .+|.+......+.+.|. . +.+..+. -...|+|+...
T Consensus 35 kgKtI---aIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~--v~~~~Ea---~~~ADvVviLl 105 (487)
T PRK05225 35 KGKKI---VIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-K--VGTYEEL---IPQADLVINLT 105 (487)
T ss_pred CCCEE---EEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-c--cCCHHHH---HHhCCEEEEcC
Confidence 45666 8899987 43 1222223466655 10 12222223334444452 2 2222221 23568888643
Q ss_pred cccccCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 307 VLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 307 ~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
.- .....+..++...||||..|.+++-
T Consensus 106 PD------t~q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 106 PD------KQHSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred Ch------HHHHHHHHHHHhhCCCCCEEEecCC
Confidence 22 2344577999999999999988873
No 394
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=36.74 E-value=2.1e+02 Score=26.83 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=51.4
Q ss_pred hCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~d~sFDlV 302 (392)
+.+++.+ |=.|+ +.|..+..+++ .|..++.++ .+....+.+.+.|. ..+......+ .. .+.+|+|
T Consensus 140 ~~~g~~v---lV~ga~g~~g~~~~~~a~~~g~~v~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~i~~~-~~~~d~v 212 (320)
T cd08243 140 LQPGDTL---LIRGGTSSVGLAALKLAKALGATVTATT--RSPERAALLKELGA-DEVVIDDGAIAEQLRAA-PGGFDKV 212 (320)
T ss_pred CCCCCEE---EEEcCCChHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHhcCC-cEEEecCccHHHHHHHh-CCCceEE
Confidence 3444444 66664 56777777777 688887744 22344445555553 2222211110 11 3568888
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+.... . ..+.++.+.|+++|.++..
T Consensus 213 l~~~~--~--------~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 213 LELVG--T--------ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred EECCC--h--------HHHHHHHHHhccCCEEEEE
Confidence 75322 1 2567888999999998754
No 395
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=36.71 E-value=1.8e+02 Score=31.46 Aligned_cols=85 Identities=11% Similarity=0.095 Sum_probs=49.8
Q ss_pred CCcchHHHHH----HHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCC----CCCcccEEEEcccccccCCchh
Q 047630 245 GGVATFAVRM----MERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPF----FDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 245 CGtG~~a~~L----a~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf----~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
||.|.++..+ .+.+..++.+|.| .+..+.+.+.| .+.+.+|..+... .-+..|++++... +++.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d--~~~v~~~~~~g-~~v~~GDat~~~~L~~agi~~A~~vv~~~~-----d~~~ 477 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERD--ISAVNLMRKYG-YKVYYGDATQLELLRAAGAEKAEAIVITCN-----EPED 477 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHhCC-CeEEEeeCCCHHHHHhcCCccCCEEEEEeC-----CHHH
Confidence 4555554444 4478888885544 45556666666 5888998776422 2235677765431 1122
Q ss_pred HHHHHHHHHHcccCCcEEEEEe
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~ 338 (392)
...+-...|.+.|...++...
T Consensus 478 -n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 478 -TMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred -HHHHHHHHHHHCCCCeEEEEe
Confidence 234455566778888776653
No 396
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.56 E-value=2.8e+02 Score=25.99 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=47.1
Q ss_pred hCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC---CCCCCcccEEEE
Q 047630 231 TKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL---PFFDNTLDIVHS 304 (392)
Q Consensus 231 l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L---pf~d~sFDlV~s 304 (392)
+.++..+ |-.|+ +.|..+..+++ .|.++++++ . ......+.+.+.-.++......+ ....+.+|+|+.
T Consensus 141 ~~~g~~v---li~g~~g~~g~~~~~la~~~g~~v~~~~--~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~ 214 (319)
T cd08267 141 VKPGQRV---LINGASGGVGTFAVQIAKALGAHVTGVC--S-TRNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFD 214 (319)
T ss_pred CCCCCEE---EEEcCCcHHHHHHHHHHHHcCCEEEEEe--C-HHHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEE
Confidence 3444555 88886 35667777776 688887744 2 23334444445311111111111 123456899886
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
...-.. . ..... ...|+++|.++..
T Consensus 215 ~~~~~~----~---~~~~~-~~~l~~~g~~i~~ 239 (319)
T cd08267 215 AVGNSP----F---SLYRA-SLALKPGGRYVSV 239 (319)
T ss_pred CCCchH----H---HHHHh-hhccCCCCEEEEe
Confidence 432101 1 12222 2238999988754
No 397
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=36.25 E-value=3.2e+02 Score=26.48 Aligned_cols=112 Identities=16% Similarity=0.081 Sum_probs=58.5
Q ss_pred EEEcCCc-c-hHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 241 LDIGGGV-A-TFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 241 LDIGCGt-G-~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
-=||+|. | .++..|++.|..+++. |.+....+.+.+.|. .. ..+..++.-....-|+|+..-. +....+
T Consensus 4 g~IGlG~MG~~mA~~L~~~g~~v~v~--dr~~~~~~~~~~~g~-~~-~~~~~e~~~~~~~~dvvi~~v~-----~~~~~~ 74 (301)
T PRK09599 4 GMIGLGRMGGNMARRLLRGGHEVVGY--DRNPEAVEALAEEGA-TG-ADSLEELVAKLPAPRVVWLMVP-----AGEITD 74 (301)
T ss_pred EEEcccHHHHHHHHHHHHCCCeEEEE--ECCHHHHHHHHHCCC-ee-cCCHHHHHhhcCCCCEEEEEec-----CCcHHH
Confidence 4467775 3 3677778888888884 443344444444452 21 1122211100012477766322 223445
Q ss_pred HHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 319 FLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
.++..+...|++|. ++++.-.. .......+.+.+++.|...+.
T Consensus 75 ~v~~~l~~~l~~g~-ivid~st~-~~~~~~~~~~~~~~~g~~~~d 117 (301)
T PRK09599 75 ATIDELAPLLSPGD-IVIDGGNS-YYKDDIRRAELLAEKGIHFVD 117 (301)
T ss_pred HHHHHHHhhCCCCC-EEEeCCCC-ChhHHHHHHHHHHHcCCEEEe
Confidence 67788888888865 44443222 222233466778887866553
No 398
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=35.61 E-value=17 Score=29.68 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=9.0
Q ss_pred EEEcCCcchHH
Q 047630 241 LDIGGGVATFA 251 (392)
Q Consensus 241 LDIGCGtG~~a 251 (392)
+|||||.|..-
T Consensus 7 IDIGcG~GNTm 17 (124)
T PF07101_consen 7 IDIGCGAGNTM 17 (124)
T ss_pred cccccCCCcch
Confidence 49999999843
No 399
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=35.29 E-value=79 Score=31.77 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhCCC--CcccEEEEEcCCcchHHHHHHH--cCCEEEEEecCCCch--hHHHHHhcCC---ccEEEe----
Q 047630 221 LDFSIDEVLATKKP--GTIRIGLDIGGGVATFAVRMME--RNITIVTTSMNLNGP--FNNFIASRGV---VPLYIS---- 287 (392)
Q Consensus 221 ~~~lI~~ll~l~~~--~~ir~VLDIGCGtG~~a~~La~--~g~~vvg~~iD~~a~--~~~~aa~rg~---i~~~~~---- 287 (392)
+-.+|++++.-... +.++..+|||.|+-.+-..+.. .+...+++++|-..- ....+.+.++ +..++.
T Consensus 85 YihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~k 164 (419)
T KOG2912|consen 85 YIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQK 164 (419)
T ss_pred hHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchh
Confidence 44567777754432 4566689999888765444333 355666666553111 1113444442 333322
Q ss_pred ----ccCcCCCCCCcccEEEEcccc
Q 047630 288 ----ISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 288 ----d~~~Lpf~d~sFDlV~s~~~l 308 (392)
|.... -.+..||.+.|+-.+
T Consensus 165 tll~d~~~~-~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 165 TLLMDALKE-ESEIIYDFCMCNPPF 188 (419)
T ss_pred hcchhhhcc-CccceeeEEecCCch
Confidence 21111 135569999888554
No 400
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=35.18 E-value=2.3e+02 Score=27.42 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=49.6
Q ss_pred hhCCCCcccEEEEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccC-cCC---CCCCcccEEE
Q 047630 230 ATKKPGTIRIGLDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQ-RLP---FFDNTLDIVH 303 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~-~Lp---f~d~sFDlV~ 303 (392)
.+.++..+ |=.|+| .|..+..+++ .|..++.++ .+....+.+.+.|. ..+....+ .+. .....+|+++
T Consensus 160 ~~~~~~~v---lV~g~g~iG~~~~~~a~~~G~~vi~~~--~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~d~vi 233 (333)
T cd08296 160 GAKPGDLV---AVQGIGGLGHLAVQYAAKMGFRTVAIS--RGSDKADLARKLGA-HHYIDTSKEDVAEALQELGGAKLIL 233 (333)
T ss_pred CCCCCCEE---EEECCcHHHHHHHHHHHHCCCeEEEEe--CChHHHHHHHHcCC-cEEecCCCccHHHHHHhcCCCCEEE
Confidence 34444444 666753 2555555665 688877744 32344455555553 22222111 110 0013478887
Q ss_pred EcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 304 SMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 304 s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
.... . ...+.++.+.|+++|.++..
T Consensus 234 ~~~g--~-------~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 234 ATAP--N-------AKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred ECCC--c-------hHHHHHHHHHcccCCEEEEE
Confidence 5321 0 13678889999999998754
No 401
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.89 E-value=2.7e+02 Score=28.14 Aligned_cols=97 Identities=11% Similarity=0.148 Sum_probs=52.5
Q ss_pred hCCCCcccEEEEEcCCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHh-cCCccEEEeccCc---CCCCCCcccEEE-E
Q 047630 231 TKKPGTIRIGLDIGGGVATFAVRMME-RNITIVTTSMNLNGPFNNFIAS-RGVVPLYISISQR---LPFFDNTLDIVH-S 304 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~-rg~i~~~~~d~~~---Lpf~d~sFDlV~-s 304 (392)
+.++..+. |.-+| |-|.++..+++ .|..|++ +|-+....+.+.+ -|. +.++...++ +.-..++.|.++ +
T Consensus 179 ~~pG~~vg-I~GlG-GLGh~aVq~AKAMG~rV~v--is~~~~kkeea~~~LGA-d~fv~~~~d~d~~~~~~~~~dg~~~~ 253 (360)
T KOG0023|consen 179 LGPGKWVG-IVGLG-GLGHMAVQYAKAMGMRVTV--ISTSSKKKEEAIKSLGA-DVFVDSTEDPDIMKAIMKTTDGGIDT 253 (360)
T ss_pred CCCCcEEE-EecCc-ccchHHHHHHHHhCcEEEE--EeCCchhHHHHHHhcCc-ceeEEecCCHHHHHHHHHhhcCccee
Confidence 34554442 24444 48999999998 6999998 5553324444444 453 333332211 111123344332 1
Q ss_pred cccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 305 MHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 305 ~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
...+.. ..+.-+.+.||++|.+++....
T Consensus 254 v~~~a~--------~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 254 VSNLAE--------HALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred eeeccc--------cchHHHHHHhhcCCEEEEEeCc
Confidence 111111 2457788999999999887653
No 402
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=34.78 E-value=61 Score=30.68 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecc
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
...+++.+.+.++.||.+++.++..
T Consensus 173 ~~~~l~~l~~~~~~~g~~l~iDYG~ 197 (252)
T PF02636_consen 173 ALQWLEQLAERLPKGGALLIIDYGY 197 (252)
T ss_dssp HHHHHHHHHHHCCC-EEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCEEEEEeCCC
Confidence 4567888888888877777776644
No 403
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=34.75 E-value=2.9e+02 Score=26.94 Aligned_cols=89 Identities=11% Similarity=0.029 Sum_probs=49.7
Q ss_pred EEEEcCCc--chHHHHHHHcCCEEEEEecCCCchhHHHHHhc-CCccEEE-eccCcC------CCCCCcccEEEEccccc
Q 047630 240 GLDIGGGV--ATFAVRMMERNITIVTTSMNLNGPFNNFIASR-GVVPLYI-SISQRL------PFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 240 VLDIGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r-g~i~~~~-~d~~~L------pf~d~sFDlV~s~~~l~ 309 (392)
|+=+|+|. |.++.+|++.|.+|+.++ -.....+.+.++ |+ .+.. +..... +-..+.||+|+..-=
T Consensus 5 I~IiGaGaiG~~~a~~L~~~G~~V~lv~--r~~~~~~~i~~~~Gl-~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK-- 79 (305)
T PRK05708 5 WHILGAGSLGSLWACRLARAGLPVRLIL--RDRQRLAAYQQAGGL-TLVEQGQASLYAIPAETADAAEPIHRLLLACK-- 79 (305)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCeEEEE--echHHHHHHhhcCCe-EEeeCCcceeeccCCCCcccccccCEEEEECC--
Confidence 37899886 558888888888887744 322233334333 43 2211 110111 112246898875321
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
-.+.+.+++.+...+.++..++..
T Consensus 80 ----~~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 80 ----AYDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred ----HHhHHHHHHHHHhhCCCCCEEEEE
Confidence 123456788899999998866433
No 404
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=34.69 E-value=3e+02 Score=23.69 Aligned_cols=94 Identities=10% Similarity=0.002 Sum_probs=48.0
Q ss_pred HHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHHHHHHccc
Q 047630 250 FAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLR 329 (392)
Q Consensus 250 ~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLK 329 (392)
++..|...|++|+..+.+...+....++.+.. .|+|..+....+ .....+.++.++.+..-
T Consensus 23 v~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~-----------------~d~V~lS~~~~~--~~~~~~~~~~~L~~~~~ 83 (137)
T PRK02261 23 LDRALTEAGFEVINLGVMTSQEEFIDAAIETD-----------------ADAILVSSLYGH--GEIDCRGLREKCIEAGL 83 (137)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC-----------------CCEEEEcCcccc--CHHHHHHHHHHHHhcCC
Confidence 55566668898887777663333333333322 344444433322 12344556666655533
Q ss_pred CCcEEEEEeecccccchHHHHHHHHHHcCCeEE
Q 047630 330 PGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 330 PGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
++=.+++---....+...++..+.+++.||..+
T Consensus 84 ~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~v 116 (137)
T PRK02261 84 GDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRV 116 (137)
T ss_pred CCCeEEEECCCCCCccChHHHHHHHHHcCCCEE
Confidence 332333333222233334556678888897655
No 405
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=34.68 E-value=2.6e+02 Score=27.17 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=45.8
Q ss_pred EEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEec-cCc----C-CCCCCcccEEEEccccccc
Q 047630 241 LDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISI-SQR----L-PFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 241 LDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d-~~~----L-pf~d~sFDlV~s~~~l~~~ 311 (392)
|-.|+|. |..+..+++ .|. .++.++ .+......+.+.|. ..+... ... + ....+.+|+|+.....
T Consensus 180 lI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~--- 253 (350)
T cd08240 180 VIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGA-DVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNN--- 253 (350)
T ss_pred EEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCC-cEEecCCCccHHHHHHHHhCCCCcEEEECCCC---
Confidence 6667643 455555665 677 566643 32344445555553 222221 101 0 0112258888753321
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
...+.++.+.|+++|.++...
T Consensus 254 ------~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 254 ------SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred ------HHHHHHHHHHhhcCCeEEEEC
Confidence 125788899999999997543
No 406
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=33.89 E-value=82 Score=26.77 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=50.9
Q ss_pred EEEcCCc-ch-HHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEec-------cCcC---CCCCCcccEEEEcccc
Q 047630 241 LDIGGGV-AT-FAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISI-------SQRL---PFFDNTLDIVHSMHVL 308 (392)
Q Consensus 241 LDIGCGt-G~-~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d-------~~~L---pf~d~sFDlV~s~~~l 308 (392)
+=+|+|. |. ++..|++.+.+|..++ - ....+...+++. .+...+ .... +.....+|+|+..-=
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~~--r-~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK- 76 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLVS--R-SPRLEAIKEQGL-TITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK- 76 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEEE--S-HHHHHHHHHHCE-EEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS-
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEEE--c-cccHHhhhheeE-EEEecccceecccccccCcchhccCCCcEEEEEec-
Confidence 5577776 43 6777778899988744 3 222344455552 221111 1111 123567999886521
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
..+.+.++..+.+.+.++..+++.
T Consensus 77 -----a~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 77 -----AYQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp -----GGGHHHHHHHHCTGEETTEEEEEE
T ss_pred -----ccchHHHHHHHhhccCCCcEEEEE
Confidence 133457899999999999776554
No 407
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=33.64 E-value=2.7e+02 Score=26.79 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=51.5
Q ss_pred HHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHH---HHHHH
Q 047630 250 FAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLM---FDIYR 326 (392)
Q Consensus 250 ~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L---~el~R 326 (392)
++..|++.|.++++. |.+....+...+.|. .. ..+.... -...|+|+..-. +...++.++ ..+..
T Consensus 11 mA~~L~~~G~~V~v~--dr~~~~~~~l~~~g~-~~-~~s~~~~---~~~advVil~vp-----~~~~~~~v~~g~~~l~~ 78 (288)
T TIGR01692 11 MAANLLKAGHPVRVF--DLFPDAVEEAVAAGA-QA-AASPAEA---AEGADRVITMLP-----AGQHVISVYSGDEGILP 78 (288)
T ss_pred HHHHHHhCCCeEEEE--eCCHHHHHHHHHcCC-ee-cCCHHHH---HhcCCEEEEeCC-----ChHHHHHHHcCcchHhh
Confidence 556666678888884 443444445555552 11 1121111 123588776432 223344555 56666
Q ss_pred cccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEE
Q 047630 327 VLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 327 vLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
.+++|- ++++.- ....+....+.+.+++.|...+.
T Consensus 79 ~~~~g~-~vid~s-t~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 79 KVAKGS-LLIDCS-TIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred cCCCCC-EEEECC-CCCHHHHHHHHHHHHHcCCcEEE
Confidence 777665 444433 22333334466777777765443
No 408
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=33.47 E-value=5e+02 Score=25.95 Aligned_cols=96 Identities=9% Similarity=0.043 Sum_probs=53.8
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCCCchhHHHHH-hcCCccEEEeccCcCCCCCCcccEEEEccccccc
Q 047630 233 KPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNLNGPFNNFIA-SRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 233 ~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa-~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~ 311 (392)
.++++ |=+|--...+...|....+.+.. -+. ....... ..+. ....+.....+ ....||+|+....
T Consensus 19 ~~~~~---l~~~~~~d~~~~~l~~~~~~~~~--~~~--~~~~~~~~~~~~-~~~f~~~~~~~-~~~~~d~~~~~~p---- 85 (342)
T PRK09489 19 EQRRV---LFAGDLQDDLPAQLDAASVRVHT--QQF--HHWQVLSRQMGD-NARFSLVATAE-DVADCDTLIYYWP---- 85 (342)
T ss_pred CCCcE---EEEcCcchhhHHhhhccceEEeh--hhh--HHHHHHHhhcCC-ceEeccccCCc-cCCCCCEEEEECC----
Confidence 33455 88887777777777633333433 222 1111112 1121 22222111111 1257999886443
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
......+..|.++.+.|+|||.+++..-..
T Consensus 86 k~k~~~~~~l~~~~~~l~~g~~i~~~G~~~ 115 (342)
T PRK09489 86 KNKQEAQFQLMNLLSLLPVGTDIFVVGENR 115 (342)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEEecc
Confidence 334566789999999999999999986544
No 409
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=33.47 E-value=2.1e+02 Score=27.74 Aligned_cols=93 Identities=12% Similarity=0.009 Sum_probs=49.2
Q ss_pred hCCCCcccEEEEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEecc-CcC-----CCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISIS-QRL-----PFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~-~~L-----pf~d~sFDlV 302 (392)
+.++.++ |=.|+| .|..+..+++ .|.++++++ -+......+.+.|...++.... ..+ .+..+.+|+|
T Consensus 163 ~~~~~~v---lV~g~g~vg~~~~~~a~~~G~~vi~~~--~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~v 237 (345)
T cd08260 163 VKPGEWV---AVHGCGGVGLSAVMIASALGARVIAVD--IDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVS 237 (345)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCeEEEEe--CCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEE
Confidence 3444444 555653 3555555665 688887744 2234444554455322222111 111 1112268988
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+..-. . ...+.+..+.|+++|.++..
T Consensus 238 i~~~g--~-------~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 238 VDALG--I-------PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred EEcCC--C-------HHHHHHHHHHhhcCCEEEEe
Confidence 86421 0 12567888999999998754
No 410
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=32.88 E-value=2.9e+02 Score=25.66 Aligned_cols=93 Identities=15% Similarity=0.056 Sum_probs=50.5
Q ss_pred hhCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----C-CCCCccc
Q 047630 230 ATKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----P-FFDNTLD 300 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----p-f~d~sFD 300 (392)
.+.++..+ |=.|+ +.|..+..+++ .|..+++++ .+......+.+.|.-.++......+ . .....+|
T Consensus 133 ~~~~g~~v---lI~g~~g~~g~~~~~~a~~~g~~v~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (320)
T cd05286 133 PVKPGDTV---LVHAAAGGVGLLLTQWAKALGATVIGTV--SSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVD 207 (320)
T ss_pred CCCCCCEE---EEEcCCchHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCee
Confidence 34454444 66673 45666666766 688887744 3234444555555312222111010 0 1234589
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+|+....- ..+.+..+.|+++|.++..
T Consensus 208 ~vl~~~~~----------~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 208 VVYDGVGK----------DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred EEEECCCc----------HhHHHHHHhhccCcEEEEE
Confidence 88853221 1456778899999998754
No 411
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.62 E-value=3.7e+02 Score=26.38 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=61.6
Q ss_pred ccEEEEEcCCcchHHHHHHHc-CCEEEEEecCCCchhHH----HHHhcC-----CccEEEeccCcC------C---CCCC
Q 047630 237 IRIGLDIGGGVATFAVRMMER-NITIVTTSMNLNGPFNN----FIASRG-----VVPLYISISQRL------P---FFDN 297 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~-g~~vvg~~iD~~a~~~~----~aa~rg-----~i~~~~~d~~~L------p---f~d~ 297 (392)
++.|+-+|||-=.-+.++-.. +..+. ++|. ++..+ ...+.+ ...++..|..+- + |..+
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vf--EvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVF--EVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEE--ECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 777899999987777776654 35554 4666 33333 223334 244555565422 1 2223
Q ss_pred cccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 298 TLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 298 sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.--++++-.++.. .+++...++|..+.....||-.++...
T Consensus 170 ~pt~~iaEGLl~Y-L~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 170 RPTLWIAEGLLMY-LPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CCeEEEecccccc-CCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 3335556566655 677888899999999999988886664
No 412
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=32.54 E-value=1.4e+02 Score=30.93 Aligned_cols=87 Identities=13% Similarity=0.024 Sum_probs=50.0
Q ss_pred EEEEcCCc-chH-HHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhH
Q 047630 240 GLDIGGGV-ATF-AVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLL 317 (392)
Q Consensus 240 VLDIGCGt-G~~-a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l 317 (392)
|+=+|+|. |.. +..+...|.+|+.++.|. .....+...|. .+ .+.+.. -...|+|+..-.- .
T Consensus 215 VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp--~ra~~A~~~G~-~v--~~l~ea---l~~aDVVI~aTG~------~-- 278 (425)
T PRK05476 215 VVVAGYGDVGKGCAQRLRGLGARVIVTEVDP--ICALQAAMDGF-RV--MTMEEA---AELGDIFVTATGN------K-- 278 (425)
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEcCCc--hhhHHHHhcCC-Ee--cCHHHH---HhCCCEEEECCCC------H--
Confidence 38899886 433 333444788988866543 33334444442 22 122221 1257999875321 1
Q ss_pred HHHHH-HHHHcccCCcEEEEEeecccc
Q 047630 318 HFLMF-DIYRVLRPGGLFWLDHFFCVG 343 (392)
Q Consensus 318 ~~~L~-el~RvLKPGG~lii~~~~~~~ 343 (392)
.++. +..+.+|+|++++....+...
T Consensus 279 -~vI~~~~~~~mK~GailiNvG~~d~E 304 (425)
T PRK05476 279 -DVITAEHMEAMKDGAILANIGHFDNE 304 (425)
T ss_pred -HHHHHHHHhcCCCCCEEEEcCCCCCc
Confidence 2444 788999999999877655543
No 413
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=32.40 E-value=2.1e+02 Score=28.33 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=44.0
Q ss_pred EEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHH-hcCCccEEEeccC--cCCCCCCcccEEEEcccccccCCch
Q 047630 241 LDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIA-SRGVVPLYISISQ--RLPFFDNTLDIVHSMHVLSNWIPTT 315 (392)
Q Consensus 241 LDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa-~rg~i~~~~~d~~--~Lpf~d~sFDlV~s~~~l~~~~~~~ 315 (392)
|=+|+| .|..+..+++ .|..+++++ .+......+. +.|. .......+ .+.-....+|+|+-.-.-
T Consensus 185 lV~G~G~vG~~av~~Ak~~G~~vi~~~--~~~~~~~~~~~~~Ga-~~~i~~~~~~~~~~~~~~~D~vid~~g~------- 254 (357)
T PLN02514 185 GILGLGGVGHMGVKIAKAMGHHVTVIS--SSDKKREEALEHLGA-DDYLVSSDAAEMQEAADSLDYIIDTVPV------- 254 (357)
T ss_pred EEEcccHHHHHHHHHHHHCCCeEEEEe--CCHHHHHHHHHhcCC-cEEecCCChHHHHHhcCCCcEEEECCCc-------
Confidence 555654 3666666666 677777644 2223333333 3443 22211111 110001247877753211
Q ss_pred hHHHHHHHHHHcccCCcEEEEEe
Q 047630 316 LLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 316 ~l~~~L~el~RvLKPGG~lii~~ 338 (392)
...+.++.+.|++||.++...
T Consensus 255 --~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 255 --FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred --hHHHHHHHHHhccCCEEEEEC
Confidence 125677889999999987654
No 414
>PRK06545 prephenate dehydrogenase; Validated
Probab=32.17 E-value=2.9e+02 Score=27.68 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=43.6
Q ss_pred EEEcCCc--chHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 241 LDIGGGV--ATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 241 LDIGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
.=||.|. |.++..+.+.|..+..++.|.+......+...+.+.-...+... .-...|+|+..-.. ....
T Consensus 4 ~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~aDlVilavP~------~~~~ 74 (359)
T PRK06545 4 LIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQR---AAAEADLIVLAVPV------DATA 74 (359)
T ss_pred EEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHH---HhcCCCEEEEeCCH------HHHH
Confidence 5567765 45777777788777776666532221222222222111111111 11346888865432 3456
Q ss_pred HHHHHHHH-cccCC
Q 047630 319 FLMFDIYR-VLRPG 331 (392)
Q Consensus 319 ~~L~el~R-vLKPG 331 (392)
.++.++.. .++||
T Consensus 75 ~vl~~l~~~~l~~~ 88 (359)
T PRK06545 75 ALLAELADLELKPG 88 (359)
T ss_pred HHHHHHhhcCCCCC
Confidence 78888887 47877
No 415
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=32.07 E-value=1.1e+02 Score=26.42 Aligned_cols=91 Identities=18% Similarity=0.289 Sum_probs=47.8
Q ss_pred CCCCcccEEEEEcCCcch-HHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCC--CCCCcccEEEEcccc
Q 047630 232 KKPGTIRIGLDIGGGVAT-FAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLP--FFDNTLDIVHSMHVL 308 (392)
Q Consensus 232 ~~~~~ir~VLDIGCGtG~-~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lp--f~d~sFDlV~s~~~l 308 (392)
...+++ ++||-|.=. .|..|++.|..|+++|++.. .+..| ++++..|+.+=. .. ...|+|.+...-
T Consensus 12 ~~~~ki---VEVGiG~~~~vA~~L~~~G~dV~~tDi~~~------~a~~g-~~~v~DDif~P~l~iY-~~a~lIYSiRPP 80 (127)
T PF03686_consen 12 NNYGKI---VEVGIGFNPEVAKKLKERGFDVIATDINPR------KAPEG-VNFVVDDIFNPNLEIY-EGADLIYSIRPP 80 (127)
T ss_dssp S-SSEE---EEET-TT--HHHHHHHHHS-EEEEE-SS-S----------S-TTEE---SSS--HHHH-TTEEEEEEES--
T ss_pred CCCCcE---EEECcCCCHHHHHHHHHcCCcEEEEECccc------ccccC-cceeeecccCCCHHHh-cCCcEEEEeCCC
Confidence 333455 999998754 78888899999999776652 23345 688888876521 12 247888887653
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEeecc
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFC 341 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~ 341 (392)
.++...+.++.+.+ |.-++|..+..
T Consensus 81 ------~El~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 81 ------PELQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp ------TTSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred ------hHHhHHHHHHHHHh--CCCEEEECCCC
Confidence 33334555665543 56777777654
No 416
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=32.01 E-value=2.8e+02 Score=26.73 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=49.1
Q ss_pred hhCCCCcccEEEEEcCC-cchHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEecc-------CcCCCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGGG-VATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISIS-------QRLPFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG-tG~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~-------~~Lpf~d~sF 299 (392)
.+.++..+ |=.|+| .|..+..+++ .|.. +++++ -+......+.+.+...++.... ..+ .....+
T Consensus 162 ~~~~g~~V---lV~g~g~vg~~~~~la~~~g~~~v~~~~--~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~v 235 (343)
T cd08235 162 GIKPGDTV---LVIGAGPIGLLHAMLAKASGARKVIVSD--LNEFRLEFAKKLGADYTIDAAEEDLVEKVREL-TDGRGA 235 (343)
T ss_pred CCCCCCEE---EEECCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCCcEEecCCccCHHHHHHHH-hCCcCC
Confidence 34455554 545764 4556666666 6777 65533 2233334444444312211111 111 123458
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|+|+....- ...+.++.+.|+++|.++...
T Consensus 236 d~vld~~~~---------~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 236 DVVIVATGS---------PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CEEEECCCC---------hHHHHHHHHHhhcCCEEEEEe
Confidence 988853221 125677889999999987643
No 417
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.75 E-value=1.7e+02 Score=27.99 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=40.0
Q ss_pred cEEEEEcCCcchHHHHHH----HcCCEEEEEecCCCchhHHHHHhcCCccEEE--ecc--------CcCCCCCCcccEEE
Q 047630 238 RIGLDIGGGVATFAVRMM----ERNITIVTTSMNLNGPFNNFIASRGVVPLYI--SIS--------QRLPFFDNTLDIVH 303 (392)
Q Consensus 238 r~VLDIGCGtG~~a~~La----~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~--~d~--------~~Lpf~d~sFDlV~ 303 (392)
..||-.||-.|.++.+++ +.|..|+++.=.. .++...+.+-|+.+... .+- +-..+++++.|+.+
T Consensus 8 k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~-e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L~ 86 (289)
T KOG1209|consen 8 KKVLITGCSSGGIGYALAKEFARNGYLVYATARRL-EPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLLY 86 (289)
T ss_pred CeEEEeecCCcchhHHHHHHHHhCCeEEEEEcccc-chHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEEE
Confidence 345999999998666555 4799999866554 44444444555422211 111 11235678888887
Q ss_pred Ec
Q 047630 304 SM 305 (392)
Q Consensus 304 s~ 305 (392)
.+
T Consensus 87 NN 88 (289)
T KOG1209|consen 87 NN 88 (289)
T ss_pred cC
Confidence 55
No 418
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=31.43 E-value=3.4e+02 Score=26.19 Aligned_cols=92 Identities=16% Similarity=0.088 Sum_probs=46.7
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cC-CEEEEEecCCCchhHHHHHhcCCccEEEecc-------CcCCCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RN-ITIVTTSMNLNGPFNNFIASRGVVPLYISIS-------QRLPFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g-~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~-------~~Lpf~d~sFD 300 (392)
+.++.++ |=.|+|. |..+..+++ .| ..+++ ++.+......+.+.|.-.++.... .++. ....+|
T Consensus 164 ~~~g~~v---lI~g~g~~g~~~~~~a~~~G~~~v~~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~-~~~~~d 237 (345)
T cd08286 164 VKPGDTV---AIVGAGPVGLAALLTAQLYSPSKIIM--VDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELT-DGRGVD 237 (345)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHhCCCceeccccccHHHHHHHHh-CCCCCC
Confidence 3444444 4356532 334455555 67 66766 344333334444445312221111 1111 234589
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+|+..-. . . ..+..+.+.|+++|.++..
T Consensus 238 ~vld~~g--~----~---~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 238 VVIEAVG--I----P---ATFELCQELVAPGGHIANV 265 (345)
T ss_pred EEEECCC--C----H---HHHHHHHHhccCCcEEEEe
Confidence 8885431 0 1 2568888999999999754
No 419
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=31.03 E-value=1.3e+02 Score=28.65 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEeeccC
Q 047630 317 LHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGRKLD 371 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~k~d 371 (392)
+...+.+..|+|+++|.+++...+ .....+...+++.||..+......+..
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~----~~~~~~~~~~~~~gf~~~~~iiw~k~~ 128 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPF----SNLARIEDIAKKLGFEILGKIIWKKPS 128 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCc----hhhhHHHHHHHhCCCeEeeeEEEeCCC
Confidence 457889999999999999888755 222336667777999887666555543
No 420
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=30.95 E-value=3.9e+02 Score=24.67 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=47.3
Q ss_pred hCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC--CCCCCcccEEEEc
Q 047630 231 TKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL--PFFDNTLDIVHSM 305 (392)
Q Consensus 231 l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L--pf~d~sFDlV~s~ 305 (392)
+.++..+ |=.|+ +.|..+..+++ .|..++.++ .+. ....+.+.+...++....... ......+|+++..
T Consensus 142 ~~~~~~v---lv~g~~g~~g~~~~~~a~~~g~~v~~~~--~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~ 215 (309)
T cd05289 142 LKAGQTV---LIHGAAGGVGSFAVQLAKARGARVIATA--SAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDT 215 (309)
T ss_pred CCCCCEE---EEecCCchHHHHHHHHHHHcCCEEEEEe--cch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEEC
Confidence 3444444 66664 35556555655 688877644 212 333444444212222111111 1233458888753
Q ss_pred ccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 306 HVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 306 ~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
..- ..+..+.+.|+++|.++..
T Consensus 216 ~~~----------~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 216 VGG----------ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred Cch----------HHHHHHHHHHhcCcEEEEE
Confidence 211 1457778899999998754
No 421
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=29.71 E-value=2.8e+02 Score=30.25 Aligned_cols=89 Identities=6% Similarity=0.048 Sum_probs=52.2
Q ss_pred EEEEcCCc-ch-HHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCC----CCCcccEEEEcccccccCC
Q 047630 240 GLDIGGGV-AT-FAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPF----FDNTLDIVHSMHVLSNWIP 313 (392)
Q Consensus 240 VLDIGCGt-G~-~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf----~d~sFDlV~s~~~l~~~~~ 313 (392)
|+=+|+|. |. .+..|.+.+..++.+| .+.+..+.+.+.| .+.+.+|..+... .-+..|++++.. .+
T Consensus 403 vII~G~Gr~G~~va~~L~~~g~~vvvID--~d~~~v~~~~~~g-~~v~~GDat~~~~L~~agi~~A~~vvv~~-----~d 474 (621)
T PRK03562 403 VIIAGFGRFGQIVGRLLLSSGVKMTVLD--HDPDHIETLRKFG-MKVFYGDATRMDLLESAGAAKAEVLINAI-----DD 474 (621)
T ss_pred EEEEecChHHHHHHHHHHhCCCCEEEEE--CCHHHHHHHHhcC-CeEEEEeCCCHHHHHhcCCCcCCEEEEEe-----CC
Confidence 36677765 44 3344555788888855 4445666666666 5889998776532 223577777543 11
Q ss_pred chhHHHHHHHHHHcccCCcEEEEE
Q 047630 314 TTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 314 ~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+.....+-...|.+.|.-.++..
T Consensus 475 -~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 475 -PQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred -HHHHHHHHHHHHHhCCCCeEEEE
Confidence 22223445566667777666554
No 422
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=29.64 E-value=3.6e+02 Score=25.97 Aligned_cols=90 Identities=21% Similarity=0.318 Sum_probs=50.7
Q ss_pred hCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCc----C-CCCCCcccEE
Q 047630 231 TKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQR----L-PFFDNTLDIV 302 (392)
Q Consensus 231 l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~----L-pf~d~sFDlV 302 (392)
+.++.++ |=.|+ +.|..+..+++ .|..+++++ + ......+.+.|. ..+...... . ......+|+|
T Consensus 175 ~~~g~~v---lI~g~~g~ig~~~~~~a~~~g~~vi~~~-~--~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08274 175 VGAGETV---LVTGASGGVGSALVQLAKRRGAIVIAVA-G--AAKEEAVRALGA-DTVILRDAPLLADAKALGGEPVDVV 247 (350)
T ss_pred CCCCCEE---EEEcCCcHHHHHHHHHHHhcCCEEEEEe-C--chhhHHHHhcCC-eEEEeCCCccHHHHHhhCCCCCcEE
Confidence 4455555 76776 45666666666 688887754 2 234444544553 322221111 0 1123468988
Q ss_pred EEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 303 HSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 303 ~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+.... . ..+.++.+.|+++|.++..
T Consensus 248 i~~~g--~--------~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 248 ADVVG--G--------PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred EecCC--H--------HHHHHHHHHhccCCEEEEe
Confidence 85432 1 2467888999999998743
No 423
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=29.53 E-value=68 Score=28.90 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=25.2
Q ss_pred HHHHHHHHHcccCCcEEEEEeecccccch----------HHHHHHHHHHcCCeEEE
Q 047630 318 HFLMFDIYRVLRPGGLFWLDHFFCVGAQL----------EDVYVPLIESVGFNKLK 363 (392)
Q Consensus 318 ~~~L~el~RvLKPGG~lii~~~~~~~~~l----------~~~l~~ll~~aGf~~i~ 363 (392)
..+++-+++.|.|||.+++.=+ .+.+.. ...+-..+.++||+-++
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~-~D~eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfK 120 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYV-EDRETRRQLQRGVPPAETRLGFSLLKAGFTWFK 120 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-T-T-HHHHHHHHTT--GGGSHHHHHHHTTT--EEE
T ss_pred HHHHHHHHHHhhhcCeEEEEEe-cCHHHHHHHHcCCCcccchhHHHHHhCCcEEEe
Confidence 3688889999999999988732 222211 23366788999998764
No 424
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=29.05 E-value=2e+02 Score=25.99 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=47.3
Q ss_pred EEEcCCc-ch-HHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 241 LDIGGGV-AT-FAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 241 LDIGCGt-G~-~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
.=||.|. |. .+..|.+.|++|+. ++..++...+.+.+.|. .+.+..+. -..-|+|+. ..+++...
T Consensus 8 AViGyGsQG~a~AlNLrDSG~~V~V-glr~~s~s~~~A~~~Gf---~v~~~~eA---v~~aDvV~~------L~PD~~q~ 74 (165)
T PF07991_consen 8 AVIGYGSQGHAHALNLRDSGVNVIV-GLREGSASWEKAKADGF---EVMSVAEA---VKKADVVML------LLPDEVQP 74 (165)
T ss_dssp EEES-SHHHHHHHHHHHHCC-EEEE-EE-TTCHHHHHHHHTT----ECCEHHHH---HHC-SEEEE-------S-HHHHH
T ss_pred EEECCChHHHHHHHHHHhCCCCEEE-EecCCCcCHHHHHHCCC---eeccHHHH---HhhCCEEEE------eCChHHHH
Confidence 7788886 32 56677778998764 23333434456666673 22221111 123566663 24555556
Q ss_pred HHH-HHHHHcccCCcEEEEEee
Q 047630 319 FLM-FDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 319 ~~L-~el~RvLKPGG~lii~~~ 339 (392)
+++ .++...||||-.|.+.+-
T Consensus 75 ~vy~~~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 75 EVYEEEIAPNLKPGATLVFAHG 96 (165)
T ss_dssp HHHHHHHHHHS-TT-EEEESSS
T ss_pred HHHHHHHHhhCCCCCEEEeCCc
Confidence 666 889999999999988873
No 425
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=29.00 E-value=1.6e+02 Score=30.47 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=47.1
Q ss_pred EEEEcCCcch--HHHHHHHcCCEEEEEecCCCchhHH-----------HHHhcCC------cc---------EEEeccCc
Q 047630 240 GLDIGGGVAT--FAVRMMERNITIVTTSMNLNGPFNN-----------FIASRGV------VP---------LYISISQR 291 (392)
Q Consensus 240 VLDIGCGtG~--~a~~La~~g~~vvg~~iD~~a~~~~-----------~aa~rg~------i~---------~~~~d~~~ 291 (392)
|+=||+|.+. ++..|++.|-.|+.+.=|...+... ...+-|+ +. +..+.-.+
T Consensus 48 vIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~v~ 127 (509)
T KOG1298|consen 48 VIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGKEVD 127 (509)
T ss_pred EEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCceee
Confidence 3789999876 6778888888888877776443321 1112221 11 11122346
Q ss_pred CCCCCCcccEEEEccccccc
Q 047630 292 LPFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 292 Lpf~d~sFDlV~s~~~l~~~ 311 (392)
+|||.+.|+-..+...+||-
T Consensus 128 ~pyP~~~f~~d~~GrsFhnG 147 (509)
T KOG1298|consen 128 LPYPLKNFPSDPSGRSFHNG 147 (509)
T ss_pred ccCCCcCCCCCcccceeecc
Confidence 79999999999999999884
No 426
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=28.95 E-value=3.1e+02 Score=26.48 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=47.1
Q ss_pred EEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEeccC-------cCCCCCCcccEEEEcccccc
Q 047630 241 LDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISISQ-------RLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 241 LDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~-------~Lpf~d~sFDlV~s~~~l~~ 310 (392)
|-.|+|. |..+..+++ .|. .++++ +.+....+.+.+.|.-.++..... .+ ...+.+|+|+....-
T Consensus 168 lV~~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~d~~g~-- 242 (341)
T PRK05396 168 LITGAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAVNVAKEDLRDVMAEL-GMTEGFDVGLEMSGA-- 242 (341)
T ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEecCccccHHHHHHHh-cCCCCCCEEEECCCC--
Confidence 5566653 556666666 677 46554 332333344445553122211111 11 123468888863221
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEEEee
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWLDHF 339 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii~~~ 339 (392)
...+.++.+.|+++|.++....
T Consensus 243 -------~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 243 -------PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred -------HHHHHHHHHHHhcCCEEEEEec
Confidence 1356888899999999977653
No 427
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=28.85 E-value=2.5e+02 Score=27.71 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=48.2
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEeccC--c----C-CCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISISQ--R----L-PFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~--~----L-pf~d~sFD 300 (392)
+.+++++ |=.|+|. |..+..+++ .|.. +++++ .+......+.+.|...++..... . + ....+.+|
T Consensus 181 ~~~g~~v---lI~g~g~vG~~a~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d 255 (365)
T cd05279 181 VTPGSTC---AVFGLGGVGLSVIMGCKAAGASRIIAVD--INKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVD 255 (365)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCc
Confidence 4455554 5566643 445555555 6775 55533 22334444444453222211111 0 0 01124589
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHccc-CCcEEEEEe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLR-PGGLFWLDH 338 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLK-PGG~lii~~ 338 (392)
+|+.... . ...+.+..+.|+ ++|.++...
T Consensus 256 ~vid~~g--~-------~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 256 YAFEVIG--S-------ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred EEEECCC--C-------HHHHHHHHHHhccCCCEEEEEe
Confidence 8885321 1 135678889999 999997653
No 428
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=28.79 E-value=2.1e+02 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=16.5
Q ss_pred ccEEEEEcCCcch-HHHHHHH---cCCEEEEEec
Q 047630 237 IRIGLDIGGGVAT-FAVRMME---RNITIVTTSM 266 (392)
Q Consensus 237 ir~VLDIGCGtG~-~a~~La~---~g~~vvg~~i 266 (392)
.+.||=+||-+|+ ++.+++. .|.+.+++..
T Consensus 39 pK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp -SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 3456999999998 4444443 4666666443
No 429
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=28.39 E-value=81 Score=27.87 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=41.7
Q ss_pred HHHHHHHcCCEEEEEecCCCchhHHHHHhcC-C--ccEEEeccCcCCCCC-CcccEEEEcccccccCCchhHHHHHHHHH
Q 047630 250 FAVRMMERNITIVTTSMNLNGPFNNFIASRG-V--VPLYISISQRLPFFD-NTLDIVHSMHVLSNWIPTTLLHFLMFDIY 325 (392)
Q Consensus 250 ~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg-~--i~~~~~d~~~Lpf~d-~sFDlV~s~~~l~~~~~~~~l~~~L~el~ 325 (392)
++..+...|..|..+.. .. ...|| . ..+..++-...+.+. +.+|++++... ..+....
T Consensus 12 la~a~~~~G~~v~~~~~---yg----s~~rGG~~~~~vris~~~~~~~~~~~~~Dilv~l~~-----------~~~~~~~ 73 (173)
T PF01558_consen 12 LARAAAREGYYVQSTPE---YG----SEIRGGPVVSHVRISDEPIIPSPPVGEADILVALDP-----------EALERHL 73 (173)
T ss_dssp HHHHHHHTTSEEEEEEE---EE----SSSSSSCEEEEEEEESS--SSSS-TSSESEEEESSH-----------HHHHHCG
T ss_pred HHHHHHHcCCCEEEEeC---CC----hhhcCCeEEEEEEEecCcCccCcccCCCCEEEEcCH-----------HHHHHHh
Confidence 34444457888766321 01 12334 2 233445531334444 78999998632 2445777
Q ss_pred HcccCCcEEEEEeec
Q 047630 326 RVLRPGGLFWLDHFF 340 (392)
Q Consensus 326 RvLKPGG~lii~~~~ 340 (392)
.-|||||+++++...
T Consensus 74 ~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 74 KGLKPGGVVIINSSL 88 (173)
T ss_dssp TTCETTEEEEEETTT
T ss_pred cCcCcCeEEEEECCC
Confidence 889999999999743
No 430
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.10 E-value=43 Score=35.38 Aligned_cols=91 Identities=16% Similarity=0.218 Sum_probs=54.1
Q ss_pred EEEcCCcchHHHHHHHc--C-CEEEEEecCCCchhHH--HHHhcC---CccEEEeccCcC----CCCCCcccEEEEcccc
Q 047630 241 LDIGGGVATFAVRMMER--N-ITIVTTSMNLNGPFNN--FIASRG---VVPLYISISQRL----PFFDNTLDIVHSMHVL 308 (392)
Q Consensus 241 LDIGCGtG~~a~~La~~--g-~~vvg~~iD~~a~~~~--~aa~rg---~i~~~~~d~~~L----pf~d~sFDlV~s~~~l 308 (392)
||.=|++|.-+.+.+.. | ..+++-|.|..+.... .+..++ +++-..+|+..+ +-....||+|..-
T Consensus 114 LealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDLD--- 190 (525)
T KOG1253|consen 114 LEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDLD--- 190 (525)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEecC---
Confidence 99999999988888773 3 2455544333221111 111122 133334443322 3346789999843
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.+..+. .+|..+.+.++.||+|.++.
T Consensus 191 -PyGs~s---~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 191 -PYGSPS---PFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred -CCCCcc---HHHHHHHHHhhcCCEEEEEe
Confidence 333333 48999999999999998874
No 431
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=27.55 E-value=2.3e+02 Score=29.36 Aligned_cols=82 Identities=17% Similarity=0.050 Sum_probs=44.3
Q ss_pred EEEEEcCC-cch-HHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEc-ccccccCCch
Q 047630 239 IGLDIGGG-VAT-FAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSM-HVLSNWIPTT 315 (392)
Q Consensus 239 ~VLDIGCG-tG~-~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~-~~l~~~~~~~ 315 (392)
+||=||.| .|. .+.+|++.|+..+.+ ++-........+++- ........+++-.-..+|+|+++ .+.+++....
T Consensus 180 ~vlvIGAGem~~lva~~L~~~g~~~i~I-aNRT~erA~~La~~~--~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~ 256 (414)
T COG0373 180 KVLVIGAGEMGELVAKHLAEKGVKKITI-ANRTLERAEELAKKL--GAEAVALEELLEALAEADVVISSTSAPHPIITRE 256 (414)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCCEEEE-EcCCHHHHHHHHHHh--CCeeecHHHHHHhhhhCCEEEEecCCCccccCHH
Confidence 34999999 676 567778888654332 343333333333331 11122223333233568999987 5666666666
Q ss_pred hHHHHHHH
Q 047630 316 LLHFLMFD 323 (392)
Q Consensus 316 ~l~~~L~e 323 (392)
.++..+..
T Consensus 257 ~ve~a~~~ 264 (414)
T COG0373 257 MVERALKI 264 (414)
T ss_pred HHHHHHhc
Confidence 55444443
No 432
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=27.43 E-value=3.6e+02 Score=25.49 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=49.8
Q ss_pred hhCCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEec-cCcC------CCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISI-SQRL------PFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d-~~~L------pf~d~sF 299 (392)
.+.++..+ |=.|+ +.|..+..+++ .|..++.+. +. ......+++.|. ..+... ...+ -.....+
T Consensus 136 ~~~~g~~v---lI~g~~g~ig~~~~~~a~~~G~~v~~~~-~~-~~~~~~~~~~g~-~~~~~~~~~~~~~~i~~~~~~~~~ 209 (324)
T cd08292 136 GVKPGQWL---IQNAAGGAVGKLVAMLAAARGINVINLV-RR-DAGVAELRALGI-GPVVSTEQPGWQDKVREAAGGAPI 209 (324)
T ss_pred CCCCCCEE---EEcccccHHHHHHHHHHHHCCCeEEEEe-cC-HHHHHHHHhcCC-CEEEcCCCchHHHHHHHHhCCCCC
Confidence 34454444 65564 35677777776 688876633 22 333344444553 322221 1111 0122358
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
|+|+.... . ..+.+..+.|+++|.++..
T Consensus 210 d~v~d~~g--~--------~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 210 SVALDSVG--G--------KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred cEEEECCC--C--------hhHHHHHHhhcCCcEEEEE
Confidence 98885322 1 1347788999999998754
No 433
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=26.72 E-value=2.9e+02 Score=27.56 Aligned_cols=92 Identities=9% Similarity=0.049 Sum_probs=48.1
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH-cCC-EEEEEecCCCchhHHHHHhcCCccEEEec-----------cCcCCCCC
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME-RNI-TIVTTSMNLNGPFNNFIASRGVVPLYISI-----------SQRLPFFD 296 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~-~g~-~vvg~~iD~~a~~~~~aa~rg~i~~~~~d-----------~~~Lpf~d 296 (392)
+.++..+ |=.|+|. |..+..+++ .|. .+++++ .+......+.+-|. ..+... ..++. ..
T Consensus 201 ~~~g~~V---lV~g~g~vG~~ai~lA~~~G~~~vi~~~--~~~~~~~~~~~~g~-~~~v~~~~~~~~~~~~~v~~~~-~g 273 (384)
T cd08265 201 FRPGAYV---VVYGAGPIGLAAIALAKAAGASKVIAFE--ISEERRNLAKEMGA-DYVFNPTKMRDCLSGEKVMEVT-KG 273 (384)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCCEEEEEc--CCHHHHHHHHHcCC-CEEEcccccccccHHHHHHHhc-CC
Confidence 4444444 4446643 444455555 677 577744 32333334444453 222211 11111 23
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
..+|+|+.... . . ...+.++.+.|+++|.++..
T Consensus 274 ~gvDvvld~~g--~----~--~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 274 WGADIQVEAAG--A----P--PATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCEEEECCC--C----c--HHHHHHHHHHHHcCCEEEEE
Confidence 45898886422 1 1 13567888999999999764
No 434
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=26.53 E-value=7.5e+02 Score=25.72 Aligned_cols=136 Identities=16% Similarity=0.166 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhCC----CCcccEEEEEcCCcch-HHHHHHH-cCCEEEEEecCCCchhH--------------HHHHhcC
Q 047630 221 LDFSIDEVLATKK----PGTIRIGLDIGGGVAT-FAVRMME-RNITIVTTSMNLNGPFN--------------NFIASRG 280 (392)
Q Consensus 221 ~~~lI~~ll~l~~----~~~ir~VLDIGCGtG~-~a~~La~-~g~~vvg~~iD~~a~~~--------------~~aa~rg 280 (392)
.+.|++.+.+... ....++|+|.+.|+|. ++..+.+ .|..++.+..+++..+. ....+..
T Consensus 159 ~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~~~v~~~ 238 (464)
T COG1109 159 LDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELGAEVVSINCDPDGLFPNINPNPGETELLDLAKAVKEH 238 (464)
T ss_pred HHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCccHHHHHHHHHhc
Confidence 5677777765433 2336889999999986 4445544 68888776555543331 0111111
Q ss_pred CccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHH-HHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCC
Q 047630 281 VVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMF-DIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGF 359 (392)
Q Consensus 281 ~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~-el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf 359 (392)
...+..+ .|+-.|-+....---++.+.+.+-.++. .+.+..+ .+ .++....+. ..+.+.++..|.
T Consensus 239 ~aDlgia-------~DgDaDR~~~vd~~G~~~~Gd~i~~lla~~l~~~~~-~~-~vV~tv~ss-----~~~~~i~~~~g~ 304 (464)
T COG1109 239 GADLGIA-------FDGDADRLIVVDERGNFVDGDQILALLAKYLLEKGK-LP-TVVTTVMSS-----LALEKIAKKLGG 304 (464)
T ss_pred CCCEEEE-------ecCCCceEEEEcCCCCEeCccHHHHHHHHHHHhcCC-CC-eEEEecccc-----hhHHHHHHHcCC
Confidence 1222221 1233344333221112233333323333 2222222 22 455554443 236778899999
Q ss_pred eEEEEEEeecc
Q 047630 360 NKLKWVVGRKL 370 (392)
Q Consensus 360 ~~i~w~~~~k~ 370 (392)
+.+++.++.+.
T Consensus 305 ~~~~t~vG~~~ 315 (464)
T COG1109 305 KVVRTKVGDKY 315 (464)
T ss_pred eEEEecCchHH
Confidence 99999987643
No 435
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=26.49 E-value=2.2e+02 Score=25.69 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=23.2
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
.+..|++++.... .+......|||||+++++.
T Consensus 65 ~~~~D~lva~d~~-----------~~~~~~~~l~~gg~ii~ns 96 (197)
T PRK06274 65 EGQADLLLALEPA-----------EVARNLHFLKKGGKIIVNA 96 (197)
T ss_pred CCCCCEEEEcCHH-----------HHHHHHhhcCCCcEEEEEC
Confidence 5689999985532 2244556799999999885
No 436
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=26.44 E-value=3.6e+02 Score=25.63 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=48.2
Q ss_pred EEEEcCCc-c-hHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEec-------cCcCCCCCCcccEEEEcccccc
Q 047630 240 GLDIGGGV-A-TFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISI-------SQRLPFFDNTLDIVHSMHVLSN 310 (392)
Q Consensus 240 VLDIGCGt-G-~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d-------~~~Lpf~d~sFDlV~s~~~l~~ 310 (392)
|+=+|+|. | .++..|++.|.+|+.++-+ ....+.+.+.+. .+..++ ..+.. ....+|+|+..---
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~--~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k~-- 76 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR--GAHLDALNENGL-RLEDGEITVPVLAADDPA-ELGPQDLVILAVKA-- 76 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC--hHHHHHHHHcCC-cccCCceeecccCCCChh-HcCCCCEEEEeccc--
Confidence 36788876 3 3677778888888875532 233344444452 210010 11111 11568988764322
Q ss_pred cCCchhHHHHHHHHHHcccCCcEEEE
Q 047630 311 WIPTTLLHFLMFDIYRVLRPGGLFWL 336 (392)
Q Consensus 311 ~~~~~~l~~~L~el~RvLKPGG~lii 336 (392)
..++.++..+...+.++..++.
T Consensus 77 ----~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 77 ----YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred ----ccHHHHHHHHhhhcCCCCEEEE
Confidence 2345688888888877765543
No 437
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=26.19 E-value=95 Score=29.98 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=16.2
Q ss_pred EEEEEcCCcchHHHHHHH
Q 047630 239 IGLDIGGGVATFAVRMME 256 (392)
Q Consensus 239 ~VLDIGCGtG~~a~~La~ 256 (392)
.++|+|||.|.++.++++
T Consensus 21 ~~vEfGaGrg~LS~~v~~ 38 (259)
T PF05206_consen 21 CFVEFGAGRGELSRWVAQ 38 (259)
T ss_pred EEEEECCCchHHHHHHHH
Confidence 459999999999999987
No 438
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=26.16 E-value=3.1e+02 Score=29.06 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=60.1
Q ss_pred EEcCCc-c-hHHHHHHHcCCEEEEEecCCCchhHHHHHhc----CCccEE-EeccCcCCCCCCcccEEEEcccccccCCc
Q 047630 242 DIGGGV-A-TFAVRMMERNITIVTTSMNLNGPFNNFIASR----GVVPLY-ISISQRLPFFDNTLDIVHSMHVLSNWIPT 314 (392)
Q Consensus 242 DIGCGt-G-~~a~~La~~g~~vvg~~iD~~a~~~~~aa~r----g~i~~~-~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~ 314 (392)
=||.|. | .++..|++.|..|++ .|.+....+...+. |...+. ..+..++--.-..-|+|+.+- .+.
T Consensus 11 ~IGLG~MG~~mA~nL~~~G~~V~V--~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v-----~~~ 83 (493)
T PLN02350 11 LAGLAVMGQNLALNIAEKGFPISV--YNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV-----KAG 83 (493)
T ss_pred EEeeHHHHHHHHHHHHhCCCeEEE--ECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEEC-----CCc
Confidence 355553 3 367777778999988 45544444433332 321111 122222211112368888642 344
Q ss_pred hhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 315 TLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 315 ~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
+..+.++..+...|++|- ++|+.-.....+ .....+.+++.|..-+.-
T Consensus 84 ~aV~~Vi~gl~~~l~~G~-iiID~sT~~~~~-t~~~~~~l~~~Gi~flda 131 (493)
T PLN02350 84 APVDQTIKALSEYMEPGD-CIIDGGNEWYEN-TERRIKEAAEKGLLYLGM 131 (493)
T ss_pred HHHHHHHHHHHhhcCCCC-EEEECCCCCHHH-HHHHHHHHHHcCCeEEeC
Confidence 566677888888888864 455532222222 233566777778665543
No 439
>PRK10083 putative oxidoreductase; Provisional
Probab=25.69 E-value=3.2e+02 Score=26.24 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=47.1
Q ss_pred hCCCCcccEEEEEcCCc-chHHHHHHH--cCCE-EEEEecCCCchhHHHHHhcCCccEEEecc-----CcCCCCCCcccE
Q 047630 231 TKKPGTIRIGLDIGGGV-ATFAVRMME--RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISIS-----QRLPFFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGCGt-G~~a~~La~--~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~-----~~Lpf~d~sFDl 301 (392)
+.++.++ |=.|+|. |..+..+++ .|.. +++ ++.+....+.+.+.|. ..+...- +.+.-....+|+
T Consensus 158 ~~~g~~v---lI~g~g~vG~~~~~~a~~~~G~~~v~~--~~~~~~~~~~~~~~Ga-~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 158 PTEQDVA---LIYGAGPVGLTIVQVLKGVYNVKAVIV--ADRIDERLALAKESGA-DWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHhCCCCEEEE--EcCCHHHHHHHHHhCC-cEEecCccccHHHHHhcCCCCCCE
Confidence 4444444 6677543 556666666 3875 555 3332344444445553 2222111 111101122456
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
|+....- . ..+.+..+.|+++|.++...
T Consensus 232 vid~~g~------~---~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 232 IIDAACH------P---SILEEAVTLASPAARIVLMG 259 (339)
T ss_pred EEECCCC------H---HHHHHHHHHhhcCCEEEEEc
Confidence 6643210 1 25688889999999997654
No 440
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=25.66 E-value=2.2e+02 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.365 Sum_probs=19.6
Q ss_pred CcccEEEEEcCCcch-HHHHHHH-cCCEEEE
Q 047630 235 GTIRIGLDIGGGVAT-FAVRMME-RNITIVT 263 (392)
Q Consensus 235 ~~ir~VLDIGCGtG~-~a~~La~-~g~~vvg 263 (392)
..+++|+|.+.|+|. +...+.+ .|.+++.
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~~~~~ 50 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGCDVIE 50 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCcEEE
Confidence 556889999999996 3444444 6777765
No 441
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=25.63 E-value=2e+02 Score=23.68 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=35.8
Q ss_pred HHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEEEee
Q 047630 319 FLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWVVGR 368 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~~~~ 368 (392)
.+++++.+.|+||...++..... ...+.+.+.+++.|-+++++....
T Consensus 43 ~~~~ev~~~L~~GssAl~~lv~~---~~~d~v~~~l~~~gg~v~~t~ls~ 89 (102)
T PF06897_consen 43 EFIKEVGEALKPGSSALFLLVDE---ATEDKVDAALRKFGGKVLRTSLSE 89 (102)
T ss_pred HHHHHHHhhcCCCceEEEEEecc---CCHHHHHHHHHhcCCEEEeccCCH
Confidence 47899999999999887765433 223447788999999999887443
No 442
>PRK06242 flavodoxin; Provisional
Probab=25.27 E-value=3.2e+02 Score=23.06 Aligned_cols=66 Identities=9% Similarity=-0.089 Sum_probs=40.0
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEE-EEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF-WLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~l-ii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
..+|.|+.....+.+.....+..++.++.. + .|-.+ ++..+........+.+.+.++..||+.+.-
T Consensus 42 ~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~-~-~~k~~~~f~t~g~~~~~~~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 42 SEYDLIGFGSGIYFGKFHKSLLKLIEKLPP-V-SGKKAFIFSTSGLPFLKYHKALKKKLKEKGFEIVGE 108 (150)
T ss_pred hHCCEEEEeCchhcCCcCHHHHHHHHhhhh-h-cCCeEEEEECCCCCcchHHHHHHHHHHHCCCEEEEE
Confidence 357888877666555555666667766643 2 23333 333333333333566888999999998754
No 443
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=25.27 E-value=3.9e+02 Score=26.02 Aligned_cols=86 Identities=16% Similarity=-0.002 Sum_probs=47.0
Q ss_pred EEEEcCCc--chHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEE--ecc-----C--cCCCCCCcccEEEEcccc
Q 047630 240 GLDIGGGV--ATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYI--SIS-----Q--RLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~--~d~-----~--~Lpf~d~sFDlV~s~~~l 308 (392)
|+=+|+|. |.++..|++.|.+|+.++-+ . .+...++|. .+.. ++. . ..+-....+|+|+..---
T Consensus 8 I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~--~--~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~ 82 (313)
T PRK06249 8 IGIIGTGAIGGFYGAMLARAGFDVHFLLRS--D--YEAVRENGL-QVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT 82 (313)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEEeC--C--HHHHHhCCe-EEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence 47889886 45788888888888774432 2 233444442 1111 100 0 001013468988754221
Q ss_pred cccCCchhHHHHHHHHHHcccCCcEEEE
Q 047630 309 SNWIPTTLLHFLMFDIYRVLRPGGLFWL 336 (392)
Q Consensus 309 ~~~~~~~~l~~~L~el~RvLKPGG~lii 336 (392)
.....++..+...+++++.++.
T Consensus 83 ------~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 83 ------TANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred ------CChHhHHHHHhhhcCCCCEEEE
Confidence 1123567777778888887643
No 444
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.87 E-value=2.7e+02 Score=27.92 Aligned_cols=46 Identities=13% Similarity=0.330 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcC--CEEEEEecCC
Q 047630 221 LDFSIDEVLATKKPGTIRIGLDIGGGVATFAVRMMERN--ITIVTTSMNL 268 (392)
Q Consensus 221 ~~~lI~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g--~~vvg~~iD~ 268 (392)
.+..+...+.-. +++++ |+.+|||.-.....|...+ ..+..+++|.
T Consensus 74 I~~~v~~Fl~~~-~~~~q-ivnLGcG~D~l~frL~s~~~~~~~~fievDf 121 (335)
T KOG2918|consen 74 IRHAVRAFLEQT-DGKKQ-IVNLGAGFDTLYFRLLSSGELDRVKFIEVDF 121 (335)
T ss_pred HHHHHHHHHHhc-CCceE-EEEcCCCccchhhhhhccCCCCcceEEEecC
Confidence 566666665432 34443 3999999999999998866 5566777877
No 445
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=24.85 E-value=4.9e+02 Score=24.55 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=49.9
Q ss_pred hCCCCcccEEEEEc--CCcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEecc-C----cC-C-CCCCccc
Q 047630 231 TKKPGTIRIGLDIG--GGVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISIS-Q----RL-P-FFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIG--CGtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~-~----~L-p-f~d~sFD 300 (392)
+.++..+ |=.| .+.|..+..+++ .|..+++++ .+....+.+.+.+. ..+.... . .+ . .....+|
T Consensus 140 ~~~~~~v---lI~g~~~~~g~~~~~la~~~g~~v~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~d 213 (324)
T cd08244 140 LTPGDVV---LVTAAAGGLGSLLVQLAKAAGATVVGAA--GGPAKTALVRALGA-DVAVDYTRPDWPDQVREALGGGGVT 213 (324)
T ss_pred CCCCCEE---EEEcCCchHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHcCC-CEEEecCCccHHHHHHHHcCCCCce
Confidence 4444444 5556 355667666766 688887744 32344445544453 3222211 0 11 0 1234589
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
+|+....- ....+..+.|+++|.++..
T Consensus 214 ~vl~~~g~----------~~~~~~~~~l~~~g~~v~~ 240 (324)
T cd08244 214 VVLDGVGG----------AIGRAALALLAPGGRFLTY 240 (324)
T ss_pred EEEECCCh----------HhHHHHHHHhccCcEEEEE
Confidence 99864321 1347788999999998754
No 446
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=24.75 E-value=2.3e+02 Score=27.27 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=43.3
Q ss_pred CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----C-CCCCcccEEEEcccccccCCchhHH
Q 047630 246 GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----P-FFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 246 GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----p-f~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
|.|..+..+++ .|..+++++ .+....+.+.+.|.-.++......+ . .....+|+|+-.-. . .
T Consensus 155 ~vG~~a~q~a~~~G~~vi~~~--~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g--~----~--- 223 (324)
T cd08291 155 ALGRMLVRLCKADGIKVINIV--RRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG--G----G--- 223 (324)
T ss_pred HHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCC--c----H---
Confidence 34666666766 688887744 3234444555555322222211111 0 12235898885322 1 1
Q ss_pred HHHHHHHHcccCCcEEEEEe
Q 047630 319 FLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~ 338 (392)
.+.+..+.|++||.++...
T Consensus 224 -~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 224 -LTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred -HHHHHHHhhCCCCEEEEEE
Confidence 2355678899999987654
No 447
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=24.46 E-value=3.9e+02 Score=25.17 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=47.7
Q ss_pred hCCCCcccEEEEEcCC--cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccC-c----C--CCCCCccc
Q 047630 231 TKKPGTIRIGLDIGGG--VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQ-R----L--PFFDNTLD 300 (392)
Q Consensus 231 l~~~~~ir~VLDIGCG--tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~-~----L--pf~d~sFD 300 (392)
+.++..+ |=.|.| .|..+..++. .|..++.++ .+......+...+. ........ . + ......+|
T Consensus 164 ~~~~~~v---lI~g~~~~iG~~~~~~~~~~g~~v~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d 237 (342)
T cd08266 164 LRPGETV---LVHGAGSGVGSAAIQIAKLFGATVIATA--GSEDKLERAKELGA-DYVIDYRKEDFVREVRELTGKRGVD 237 (342)
T ss_pred CCCCCEE---EEECCCchHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHcCC-CeEEecCChHHHHHHHHHhCCCCCc
Confidence 3444444 666764 4556555555 788887744 32233333333332 21111100 0 0 01234688
Q ss_pred EEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 301 IVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 301 lV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
+++....- ..+.++.+.|+++|.++...
T Consensus 238 ~~i~~~g~----------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 238 VVVEHVGA----------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred EEEECCcH----------HHHHHHHHHhhcCCEEEEEe
Confidence 88865331 24567778899999886553
No 448
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.33 E-value=7.1e+02 Score=24.72 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=24.4
Q ss_pred cccEEEEEcCCc--chHHHHHHHcCCEEEEEecCC
Q 047630 236 TIRIGLDIGGGV--ATFAVRMMERNITIVTTSMNL 268 (392)
Q Consensus 236 ~ir~VLDIGCGt--G~~a~~La~~g~~vvg~~iD~ 268 (392)
.+++|-=||+|+ ..++..++..|..|+..|.+.
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 345567889985 347788888999999966554
No 449
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=24.01 E-value=68 Score=30.82 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=41.9
Q ss_pred ccEEEeccCc-CCC-CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCC
Q 047630 282 VPLYISISQR-LPF-FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGF 359 (392)
Q Consensus 282 i~~~~~d~~~-Lpf-~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf 359 (392)
+.++.+.+.+ +|- +.+.+-+++.-.-+ -+.....|..++..|.|||+++++++.. ..-.+.+.+..++.|.
T Consensus 159 v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-----YesT~~aLe~lyprl~~GGiIi~DDY~~--~gcr~AvdeF~~~~gi 231 (248)
T PF05711_consen 159 VRFVKGWFPDTLPDAPIERIALLHLDCDL-----YESTKDALEFLYPRLSPGGIIIFDDYGH--PGCRKAVDEFRAEHGI 231 (248)
T ss_dssp EEEEES-HHHHCCC-TT--EEEEEE---S-----HHHHHHHHHHHGGGEEEEEEEEESSTTT--HHHHHHHHHHHHHTT-
T ss_pred EEEECCcchhhhccCCCccEEEEEEeccc-----hHHHHHHHHHHHhhcCCCeEEEEeCCCC--hHHHHHHHHHHHHcCC
Confidence 5566676432 332 23344444332211 1334578999999999999999999877 3334557777888775
Q ss_pred e
Q 047630 360 N 360 (392)
Q Consensus 360 ~ 360 (392)
+
T Consensus 232 ~ 232 (248)
T PF05711_consen 232 T 232 (248)
T ss_dssp -
T ss_pred C
Confidence 4
No 450
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=23.76 E-value=1.9e+02 Score=29.39 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=40.2
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeE
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNK 361 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~ 361 (392)
+..++|. ..+..||.+. ..++......++|+|.+.+.+.......--.....++.++++..
T Consensus 276 ~w~~~~~---~~~~~~~~~~---~~~f~~~~~~~~~~~~v~~~e~~~~~p~gs~~~~~~~~~~~~~l 336 (364)
T KOG1269|consen 276 PWNTPLT---RDTITHWQDK---SALFRGRVATLKPGGKVLILEYIRGLPEGSSDFAKYIAQAAVGL 336 (364)
T ss_pred ccccccc---hhheeecccc---cHHHHhHhhccCcCceEEehhhcCcCCcCcchHHHHHHhhhhhc
Confidence 4555565 4455566332 34788899999999999999876654444444666777765443
No 451
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=23.68 E-value=3.8e+02 Score=28.12 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=61.8
Q ss_pred cEEEEEcC-Ccc------hHHHHHHHcCCEEEEEecCCCchhHH----HHHhcCCccEEEeccCcCC----------CCC
Q 047630 238 RIGLDIGG-GVA------TFAVRMMERNITIVTTSMNLNGPFNN----FIASRGVVPLYISISQRLP----------FFD 296 (392)
Q Consensus 238 r~VLDIGC-GtG------~~a~~La~~g~~vvg~~iD~~a~~~~----~aa~rg~i~~~~~d~~~Lp----------f~d 296 (392)
.+||=+|= |+| -+|.+|.+++..+..+..|.--+... ..+++-.++|+..+.+.-| +..
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~ 180 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKE 180 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHH
Confidence 34566662 444 47778888887776666776323221 2233323677655433323 235
Q ss_pred CcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeec
Q 047630 297 NTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 297 ~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~ 340 (392)
+.||+|+.--+-.+-. ++.+-.=+.++.++++|.=.|++.+-.
T Consensus 181 ~~~DvvIvDTAGRl~i-de~Lm~El~~Ik~~~~P~E~llVvDam 223 (451)
T COG0541 181 EGYDVVIVDTAGRLHI-DEELMDELKEIKEVINPDETLLVVDAM 223 (451)
T ss_pred cCCCEEEEeCCCcccc-cHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 6799999865544423 344445678889999999998777643
No 452
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=23.62 E-value=4.6e+02 Score=23.53 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=48.7
Q ss_pred EEEcCCc-ch-HHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHH
Q 047630 241 LDIGGGV-AT-FAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLH 318 (392)
Q Consensus 241 LDIGCGt-G~-~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~ 318 (392)
+=+|=|. |. .+..++..|..|+.+++|+ .....+...|. + +...++. -...|++++.-.-.....
T Consensus 27 vV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP--i~alqA~~dGf-~--v~~~~~a---~~~adi~vtaTG~~~vi~----- 93 (162)
T PF00670_consen 27 VVIGYGKVGKGIARALRGLGARVTVTEIDP--IRALQAAMDGF-E--VMTLEEA---LRDADIFVTATGNKDVIT----- 93 (162)
T ss_dssp EEE--SHHHHHHHHHHHHTT-EEEEE-SSH--HHHHHHHHTT--E--EE-HHHH---TTT-SEEEE-SSSSSSB------
T ss_pred EEeCCCcccHHHHHHHhhCCCEEEEEECCh--HHHHHhhhcCc-E--ecCHHHH---HhhCCEEEECCCCccccC-----
Confidence 5555443 22 5556666899998866654 44456666662 3 2222221 235799988644333322
Q ss_pred HHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEE
Q 047630 319 FLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 319 ~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
.+-.+.||.|-++.-...+..+-++. .+++.+.+..
T Consensus 94 ---~e~~~~mkdgail~n~Gh~d~Eid~~-----~L~~~~~~~~ 129 (162)
T PF00670_consen 94 ---GEHFRQMKDGAILANAGHFDVEIDVD-----ALEANAVERE 129 (162)
T ss_dssp ---HHHHHHS-TTEEEEESSSSTTSBTHH-----HHHTCTSEEE
T ss_pred ---HHHHHHhcCCeEEeccCcCceeEeec-----cccccCcEEE
Confidence 34456788887775544444333332 3555455443
No 453
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=23.39 E-value=8.1e+02 Score=25.05 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCC---CCcccEEEEEcCCcch-HHH-HHHHcCCEEEEEe
Q 047630 221 LDFSIDEVLATKK---PGTIRIGLDIGGGVAT-FAV-RMMERNITIVTTS 265 (392)
Q Consensus 221 ~~~lI~~ll~l~~---~~~ir~VLDIGCGtG~-~a~-~La~~g~~vvg~~ 265 (392)
.+.|++.+..... ....++|+|.+-|+|. ++. .|.+.|.+++.+.
T Consensus 151 ~~~Y~~~l~~~~~~~~~~~lkVvvD~~nG~~~~~~~~ll~~lg~~v~~in 200 (434)
T cd05802 151 RGRYIEFLKSTFPKDLLSGLKIVLDCANGAAYKVAPEVFRELGAEVIVIN 200 (434)
T ss_pred HHHHHHHHHHhcCccccCCCEEEEECCCchHHHHHHHHHHHcCCeEEEec
Confidence 4667777665432 2467889999999987 333 4445688887643
No 454
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=23.25 E-value=4.4e+02 Score=25.32 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=50.6
Q ss_pred hhCCCCcccEEEEEcCC--cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccC-c----C--CCCCCcc
Q 047630 230 ATKKPGTIRIGLDIGGG--VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQ-R----L--PFFDNTL 299 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCG--tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~-~----L--pf~d~sF 299 (392)
.+.++..+ |=.|+| .|..+..+++ .|.+++.++-+ ....+.+.+-|. ..+..... . + ......+
T Consensus 162 ~~~~~~~v---lV~g~~~~vg~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 162 GLKPGDWV---VISGAGGGLGHLGVQYAKAMGLRVIAIDVG--DEKLELAKELGA-DAFVDFKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred CCCCCCEE---EEECCCchHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHcCC-cEEEcCCCccHHHHHHHHhcCCCC
Confidence 34444444 666664 6777777776 68888774422 233344444442 22221110 0 0 0123458
Q ss_pred cEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 300 DIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 300 DlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
|+|+....- ...+.++.+.|+++|.++..
T Consensus 236 d~vl~~~~~---------~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 236 HAVVVTAVS---------AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CEEEEcCCc---------hHHHHHHHHHhhcCCEEEEe
Confidence 888742211 12567888999999999765
No 455
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=23.25 E-value=3.6e+02 Score=27.75 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=37.3
Q ss_pred EEEEcCCc-chHHH-HHHHcC-CEEEEEecCCCchhHHHHHhcC--CccEEEeccCcCCC---CCCcccEEEEcccc
Q 047630 240 GLDIGGGV-ATFAV-RMMERN-ITIVTTSMNLNGPFNNFIASRG--VVPLYISISQRLPF---FDNTLDIVHSMHVL 308 (392)
Q Consensus 240 VLDIGCGt-G~~a~-~La~~g-~~vvg~~iD~~a~~~~~aa~rg--~i~~~~~d~~~Lpf---~d~sFDlV~s~~~l 308 (392)
||=||||. |+..+ .|++++ .+|+..| -+......+.... .++..+-|+.+.+- .-+.+|+|+.....
T Consensus 4 ilviGaG~Vg~~va~~la~~~d~~V~iAd--Rs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 4 ILVIGAGGVGSVVAHKLAQNGDGEVTIAD--RSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred EEEECCchhHHHHHHHHHhCCCceEEEEe--CCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 48899965 55443 446666 6777744 4334444444442 35666666555421 11345999876544
No 456
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=22.98 E-value=6.3e+02 Score=23.61 Aligned_cols=94 Identities=9% Similarity=0.002 Sum_probs=47.2
Q ss_pred hCCCCcccEEEEEcC-CcchHHHHHHH-cCCE-EEEEecCCCchhHHHHHhcCCccEEEeccCcC------CCCCCcccE
Q 047630 231 TKKPGTIRIGLDIGG-GVATFAVRMME-RNIT-IVTTSMNLNGPFNNFIASRGVVPLYISISQRL------PFFDNTLDI 301 (392)
Q Consensus 231 l~~~~~ir~VLDIGC-GtG~~a~~La~-~g~~-vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L------pf~d~sFDl 301 (392)
+.++..+ |=.|+ +.|..+..+++ .|.. +++++ -.......+.+-|...++......+ -.....+|+
T Consensus 127 ~~~~~~v---lI~g~g~vg~~~~~la~~~g~~~v~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~ 201 (312)
T cd08269 127 IRAGKTV---AVIGAGFIGLLFLQLAAAAGARRVIAID--RRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADV 201 (312)
T ss_pred CCCCCEE---EEECCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCE
Confidence 4444455 44454 33455555555 6777 76633 2223333333344312221111111 012345898
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
++..... . ..+.++.+.|+++|.++...
T Consensus 202 vld~~g~------~---~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 202 VIEAVGH------Q---WPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred EEECCCC------H---HHHHHHHHHhccCCEEEEEc
Confidence 8864321 1 25678889999999997653
No 457
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=22.77 E-value=4.5e+02 Score=25.38 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=44.1
Q ss_pred EEEcCC-cchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-CCCCCcccEEEEcccccccCCchhH
Q 047630 241 LDIGGG-VATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-PFFDNTLDIVHSMHVLSNWIPTTLL 317 (392)
Q Consensus 241 LDIGCG-tG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-pf~d~sFDlV~s~~~l~~~~~~~~l 317 (392)
|=.|+| .|..+..+++ .|..++.++ .+......+.+.+.-.++....... ....+.+|+|+....- .
T Consensus 174 lV~g~g~vG~~~~~~a~~~G~~v~~~~--~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~------~-- 243 (337)
T cd05283 174 GVVGIGGLGHLAVKFAKALGAEVTAFS--RSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSA------S-- 243 (337)
T ss_pred EEECCcHHHHHHHHHHHHcCCeEEEEc--CCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCC------c--
Confidence 335653 3445555555 677777744 3233444444444212221111110 0113568888853321 1
Q ss_pred HHHHHHHHHcccCCcEEEEEe
Q 047630 318 HFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 318 ~~~L~el~RvLKPGG~lii~~ 338 (392)
..+.++.+.|+++|.++...
T Consensus 244 -~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 244 -HDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred -chHHHHHHHhcCCCEEEEEe
Confidence 13577889999999887643
No 458
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=22.63 E-value=3.9e+02 Score=26.31 Aligned_cols=88 Identities=11% Similarity=0.048 Sum_probs=50.6
Q ss_pred EEEEcCCc--chHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEecc--------CcCCCCCCcccEEEEccccc
Q 047630 240 GLDIGGGV--ATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISIS--------QRLPFFDNTLDIVHSMHVLS 309 (392)
Q Consensus 240 VLDIGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~--------~~Lpf~d~sFDlV~s~~~l~ 309 (392)
|+=+|+|. |.++..|++.|..|+.+. ..+..+...+.|+ .+..... ..-+.....+|+|+..-=
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~---R~~~~~~l~~~GL-~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK-- 76 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLV---RSRRLEALKKKGL-RIEDEGGNFTTPVVAATDAEALGPADLVIVTVK-- 76 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEe---cHHHHHHHHhCCe-EEecCCCccccccccccChhhcCCCCEEEEEec--
Confidence 37789986 568899999885554422 2344455555563 1111111 111122346898875421
Q ss_pred ccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 310 NWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 310 ~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
--+.+.++..+...+++.-.+++.
T Consensus 77 ----a~q~~~al~~l~~~~~~~t~vl~l 100 (307)
T COG1893 77 ----AYQLEEALPSLAPLLGPNTVVLFL 100 (307)
T ss_pred ----cccHHHHHHHhhhcCCCCcEEEEE
Confidence 123456889999999998765443
No 459
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=22.60 E-value=5e+02 Score=24.21 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=45.1
Q ss_pred EEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----C-CCCCcccEEEEccccccc
Q 047630 241 LDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----P-FFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 241 LDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----p-f~d~sFDlV~s~~~l~~~ 311 (392)
|=.|+ |.|..+..+++ .|..++.++ .+......+.+.+...++......+ . .....+|+++....-
T Consensus 149 li~g~~~~~g~~~~~~~~~~g~~v~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~--- 223 (328)
T cd08268 149 LITAASSSVGLAAIQIANAAGATVIATT--RTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGG--- 223 (328)
T ss_pred EEecCccHHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECCch---
Confidence 66675 34555555554 688887744 3234444444444312221111111 0 122358888864321
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+.++.+.++++|.++...
T Consensus 224 -------~~~~~~~~~l~~~g~~v~~g 243 (328)
T cd08268 224 -------PQFAKLADALAPGGTLVVYG 243 (328)
T ss_pred -------HhHHHHHHhhccCCEEEEEE
Confidence 13567778999999987543
No 460
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=22.57 E-value=1.4e+02 Score=30.86 Aligned_cols=106 Identities=9% Similarity=0.043 Sum_probs=55.0
Q ss_pred hhCCCCcccEEEEEcCCcchHHHHHHHcCC--EEEEEe-cCCCchhHHHH---Hh---------cCCccEEEeccCcCC-
Q 047630 230 ATKKPGTIRIGLDIGGGVATFAVRMMERNI--TIVTTS-MNLNGPFNNFI---AS---------RGVVPLYISISQRLP- 293 (392)
Q Consensus 230 ~l~~~~~ir~VLDIGCGtG~~a~~La~~g~--~vvg~~-iD~~a~~~~~a---a~---------rg~i~~~~~d~~~Lp- 293 (392)
.+.++... .|+|.|.|.....++..+. .-+|+. ++.-++..+.. .+ .+.++.+.++...-.
T Consensus 189 ~~g~~D~F---~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~ 265 (419)
T KOG3924|consen 189 KLGPADVF---MDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKR 265 (419)
T ss_pred ccCCCCcc---cCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHH
Confidence 35565666 9999999997766665322 222322 22212221100 00 012444555432211
Q ss_pred --CCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEEEeeccc
Q 047630 294 --FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLDHFFCV 342 (392)
Q Consensus 294 --f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~~~~~~ 342 (392)
.-....++|+.+.+... ++. ..=+.++..-+++|-+++-......
T Consensus 266 v~eI~~eatvi~vNN~~Fd---p~L-~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 266 VTEIQTEATVIFVNNVAFD---PEL-KLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHHhhcceEEEEecccCC---HHH-HHhhHHHHhhCCCcceEeccccccc
Confidence 12345677877766532 232 2334588899999999876664433
No 461
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=22.38 E-value=5e+02 Score=26.17 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=47.3
Q ss_pred hCCCCcccEEEEEc--CCcchHHHHHHHc-CC---EEEEEecCCCchhHHHHHhc--------CCc-cEEEecc-CcC--
Q 047630 231 TKKPGTIRIGLDIG--GGVATFAVRMMER-NI---TIVTTSMNLNGPFNNFIASR--------GVV-PLYISIS-QRL-- 292 (392)
Q Consensus 231 l~~~~~ir~VLDIG--CGtG~~a~~La~~-g~---~vvg~~iD~~a~~~~~aa~r--------g~i-~~~~~d~-~~L-- 292 (392)
+.+++++ |=+| .|.|..+..+++. |. .++++ |.+....+.+.+. |.. .++.... ..+
T Consensus 173 ~~~g~~V---lV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~ 247 (410)
T cd08238 173 IKPGGNT---AILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHA 247 (410)
T ss_pred CCCCCEE---EEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEECCCccccHHH
Confidence 3444444 6676 3467788877774 33 57774 4434444444443 211 1111100 111
Q ss_pred ---CC-CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEEE
Q 047630 293 ---PF-FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWL 336 (392)
Q Consensus 293 ---pf-~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii 336 (392)
.. ....+|+|+..-.- ...+.+..+.++++|.+++
T Consensus 248 ~v~~~t~g~g~D~vid~~g~---------~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 248 TLMELTGGQGFDDVFVFVPV---------PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHHHHhCCCCCCEEEEcCCC---------HHHHHHHHHHhccCCeEEE
Confidence 01 22358888753211 1366888899998886644
No 462
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=22.29 E-value=1.1e+03 Score=26.19 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=53.9
Q ss_pred CcccEEEEEcCCc--chHHHHHHHcCCEEEEEecCCCchhHH-----------HHHhcCCcc---------EEEeccCcC
Q 047630 235 GTIRIGLDIGGGV--ATFAVRMMERNITIVTTSMNLNGPFNN-----------FIASRGVVP---------LYISISQRL 292 (392)
Q Consensus 235 ~~ir~VLDIGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~-----------~aa~rg~i~---------~~~~d~~~L 292 (392)
..++.|-=||+|+ +.++..++..|..|+.+|.+. ...+ ...+++.+. -+... .++
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~--~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 387 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ--HSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY 387 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH
Confidence 3677788899997 347777888999999966554 3222 112233211 01100 111
Q ss_pred CCCCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEE
Q 047630 293 PFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 293 pf~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~l 334 (392)
. .-...|+|+=. ++.. .+-..+++.++.++++|+.+|
T Consensus 388 ~-~~~~aDlViEa-v~E~---l~~K~~vf~~l~~~~~~~~il 424 (714)
T TIGR02437 388 A-GFDNVDIVVEA-VVEN---PKVKAAVLAEVEQHVREDAIL 424 (714)
T ss_pred H-HhcCCCEEEEc-Cccc---HHHHHHHHHHHHhhCCCCcEE
Confidence 1 01346777754 2322 245567999999999999888
No 463
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=22.28 E-value=4.6e+02 Score=24.72 Aligned_cols=90 Identities=10% Similarity=0.032 Sum_probs=47.4
Q ss_pred CCCCcccEEEEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEecc-------CcCCCCCCcccE
Q 047630 232 KKPGTIRIGLDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISIS-------QRLPFFDNTLDI 301 (392)
Q Consensus 232 ~~~~~ir~VLDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~-------~~Lpf~d~sFDl 301 (392)
.++..+ |=.|+ +.|..+..+++ .|..++.++-+ ....+.+.+.|.-.++.... ..+ .....+|+
T Consensus 137 ~~~~~v---lI~g~~~~vg~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~ 210 (323)
T cd05282 137 PPGDWV---IQNAANSAVGRMLIQLAKLLGFKTINVVRR--DEQVEELKALGADEVIDSSPEDLAQRVKEA-TGGAGARL 210 (323)
T ss_pred CCCCEE---EEcccccHHHHHHHHHHHHCCCeEEEEecC--hHHHHHHHhcCCCEEecccchhHHHHHHHH-hcCCCceE
Confidence 344444 66665 35667666766 68887764322 33334444444211111110 111 12345898
Q ss_pred EEEcccccccCCchhHHHHHHHHHHcccCCcEEEEE
Q 047630 302 VHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFWLD 337 (392)
Q Consensus 302 V~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~lii~ 337 (392)
|+....- . ...++.+.|+++|.++..
T Consensus 211 vl~~~g~------~----~~~~~~~~l~~~g~~v~~ 236 (323)
T cd05282 211 ALDAVGG------E----SATRLARSLRPGGTLVNY 236 (323)
T ss_pred EEECCCC------H----HHHHHHHhhCCCCEEEEE
Confidence 8854321 1 235667899999998754
No 464
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=22.19 E-value=78 Score=29.56 Aligned_cols=44 Identities=5% Similarity=0.051 Sum_probs=26.1
Q ss_pred HHHHHhhCCCCcccEEEEEcCCcchHHHHHHHcCCEEEEEecCC
Q 047630 225 IDEVLATKKPGTIRIGLDIGGGVATFAVRMMERNITIVTTSMNL 268 (392)
Q Consensus 225 I~~ll~l~~~~~ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~ 268 (392)
+..+....+.....+++|.=||+|.++..+.+.+..++.-|++.
T Consensus 9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~ 52 (260)
T PF02086_consen 9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINP 52 (260)
T ss_dssp HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-H
T ss_pred HHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechH
Confidence 34444444421455669999999999999887888888866554
No 465
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=22.09 E-value=5.4e+02 Score=24.54 Aligned_cols=84 Identities=24% Similarity=0.335 Sum_probs=46.7
Q ss_pred EEEc--CCcchHHHHHHH-c-CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcC-----CCCCCcccEEEEccccccc
Q 047630 241 LDIG--GGVATFAVRMME-R-NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRL-----PFFDNTLDIVHSMHVLSNW 311 (392)
Q Consensus 241 LDIG--CGtG~~a~~La~-~-g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~L-----pf~d~sFDlV~s~~~l~~~ 311 (392)
|=.| .+.|..+..+++ . |..++++. -+....+.+.+-|. ..+......+ ....+.+|+|+....-
T Consensus 153 lV~ga~g~vg~~~~~~ak~~~G~~vi~~~--~~~~~~~~l~~~g~-~~~~~~~~~~~~~i~~~~~~~vd~vl~~~~~--- 226 (336)
T TIGR02817 153 LIIGGAGGVGSILIQLARQLTGLTVIATA--SRPESQEWVLELGA-HHVIDHSKPLKAQLEKLGLEAVSYVFSLTHT--- 226 (336)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCEEEEEc--CcHHHHHHHHHcCC-CEEEECCCCHHHHHHHhcCCCCCEEEEcCCc---
Confidence 6566 456778788887 4 88887743 22334444444453 2222211111 0123458888743110
Q ss_pred CCchhHHHHHHHHHHcccCCcEEEE
Q 047630 312 IPTTLLHFLMFDIYRVLRPGGLFWL 336 (392)
Q Consensus 312 ~~~~~l~~~L~el~RvLKPGG~lii 336 (392)
...+.++.+.|+++|.++.
T Consensus 227 ------~~~~~~~~~~l~~~G~~v~ 245 (336)
T TIGR02817 227 ------DQHFKEIVELLAPQGRFAL 245 (336)
T ss_pred ------HHHHHHHHHHhccCCEEEE
Confidence 1256788899999998864
No 466
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=22.01 E-value=4.6e+02 Score=27.56 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=53.8
Q ss_pred EcCCc--chHHHHHHHcCCEEEEEecCCCchhHHHHHhcCC--ccEE-EeccCcCCCCCCcccEEEEcccccccCCchhH
Q 047630 243 IGGGV--ATFAVRMMERNITIVTTSMNLNGPFNNFIASRGV--VPLY-ISISQRLPFFDNTLDIVHSMHVLSNWIPTTLL 317 (392)
Q Consensus 243 IGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~--i~~~-~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l 317 (392)
||.|. +.++..|++.|.+|++. |.+....+...+.+. ..+. ..+..++--.-...|+|+.+- .+....
T Consensus 5 IGLG~MG~~mA~nL~~~G~~V~v~--drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v-----~~~~~v 77 (467)
T TIGR00873 5 IGLAVMGSNLALNMADHGFTVSVY--NRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMV-----KAGAPV 77 (467)
T ss_pred EeeHHHHHHHHHHHHhcCCeEEEE--eCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEEC-----CCcHHH
Confidence 45554 33666777789999884 444455554444310 0111 112222110112357666432 223455
Q ss_pred HHHHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEE
Q 047630 318 HFLMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKL 362 (392)
Q Consensus 318 ~~~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i 362 (392)
+.++.++...|++|- ++++.-.....+..+ ..+.+++.|..-+
T Consensus 78 ~~Vi~~l~~~L~~g~-iIID~gns~~~~t~~-~~~~l~~~gi~fv 120 (467)
T TIGR00873 78 DAVINQLLPLLEKGD-IIIDGGNSHYPDTER-RYKELKAKGILFV 120 (467)
T ss_pred HHHHHHHHhhCCCCC-EEEECCCcCHHHHHH-HHHHHHhcCCEEE
Confidence 678888888888864 455533222222222 2334566665443
No 467
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.86 E-value=6.7e+02 Score=23.95 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=47.9
Q ss_pred EEEEEcCCc-c-hHHHHHHHcCCEEEEEecCCCchhHHHHH-----------hcCCcc----------EE-EeccCcCCC
Q 047630 239 IGLDIGGGV-A-TFAVRMMERNITIVTTSMNLNGPFNNFIA-----------SRGVVP----------LY-ISISQRLPF 294 (392)
Q Consensus 239 ~VLDIGCGt-G-~~a~~La~~g~~vvg~~iD~~a~~~~~aa-----------~rg~i~----------~~-~~d~~~Lpf 294 (392)
.|.=||+|. | .++..++..|.+|+..|.+. ...+.+. +++.++ +. ..+.+.
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 80 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA--DRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED--- 80 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH---
Confidence 346688886 2 36777788899999866543 3322211 123211 11 112221
Q ss_pred CCCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEEE
Q 047630 295 FDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLFW 335 (392)
Q Consensus 295 ~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~li 335 (392)
-...|+|+..-. .+......+++++...++++.+++
T Consensus 81 -~~~aD~Vieavp----e~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 -LADCDLVIEAAT----EDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -hcCCCEEEEcCc----CCHHHHHHHHHHHHhhCCCCcEEE
Confidence 124687776421 111334567888999999988765
No 468
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=21.56 E-value=2.3e+02 Score=26.44 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=34.6
Q ss_pred CCcchHHHHHH----HcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCC---CCCcccEEEEccccc
Q 047630 245 GGVATFAVRMM----ERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPF---FDNTLDIVHSMHVLS 309 (392)
Q Consensus 245 CGtG~~a~~La----~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf---~d~sFDlV~s~~~l~ 309 (392)
|-+|..+.+++ ++|.+|+++.=|. +...+..+ +...+.|+.++.- .-..||+|++.+...
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAivRn~----~K~~~~~~-~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIVRNA----SKLAARQG-VTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEEeCh----Hhcccccc-ceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 45666555554 4899998855332 11112133 4566666655432 124599999987653
No 469
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=21.55 E-value=4.5e+02 Score=25.33 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=30.9
Q ss_pred EEEcCC-cc--hHHHHHHHcC--CEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEc
Q 047630 241 LDIGGG-VA--TFAVRMMERN--ITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSM 305 (392)
Q Consensus 241 LDIGCG-tG--~~a~~La~~g--~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~ 305 (392)
-=|||| .| .+...+.+.+ +.++++ .|.+....+..+++-.++-...+.+.+ +.+...|+|+..
T Consensus 7 giiG~G~~~~~~~~~~~~~~~~~~~~vav-~d~~~~~a~~~a~~~~~~~~~~~~~~l-l~~~~iD~V~Ia 74 (342)
T COG0673 7 GIIGAGGIAGKAHLPALAALGGGLELVAV-VDRDPERAEAFAEEFGIAKAYTDLEEL-LADPDIDAVYIA 74 (342)
T ss_pred EEEcccHHHHHHhHHHHHhCCCceEEEEE-ecCCHHHHHHHHHHcCCCcccCCHHHH-hcCCCCCEEEEc
Confidence 668998 33 2444555543 355552 255445555444443234222333333 234458888754
No 470
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=21.55 E-value=4.8e+02 Score=23.18 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=19.6
Q ss_pred ccEEEEEcCCcchHHHHHHHcCCEEEEEecCC
Q 047630 237 IRIGLDIGGGVATFAVRMMERNITIVTTSMNL 268 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~~g~~vvg~~iD~ 268 (392)
++.|+-+|||-=..+.++......+..+++|.
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~ 110 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL 110 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE-
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC
Confidence 44569999999999999988532444445666
No 471
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.50 E-value=5.4e+02 Score=24.49 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=47.8
Q ss_pred EEEEcCCc--chHHHHHHHcCCEEEEEecCCCchhHH-----------HHHhcCCcc----------EE-EeccCcCCCC
Q 047630 240 GLDIGGGV--ATFAVRMMERNITIVTTSMNLNGPFNN-----------FIASRGVVP----------LY-ISISQRLPFF 295 (392)
Q Consensus 240 VLDIGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~-----------~aa~rg~i~----------~~-~~d~~~Lpf~ 295 (392)
|-=||+|. +.++..++..|..|+.+|.+. ...+ ...+++.+. +. ..+...
T Consensus 6 I~VIG~G~mG~~ia~~la~~g~~V~~~d~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~---- 79 (282)
T PRK05808 6 IGVIGAGTMGNGIAQVCAVAGYDVVMVDISD--AAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD---- 79 (282)
T ss_pred EEEEccCHHHHHHHHHHHHCCCceEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH----
Confidence 35678885 557778888899999866543 3322 223344211 11 112111
Q ss_pred CCcccEEEEcccccccCCchhHHHHHHHHHHcccCCcEE
Q 047630 296 DNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 296 d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvLKPGG~l 334 (392)
-...|+|+-.-. .+......++.++.+.++|+..+
T Consensus 80 ~~~aDlVi~av~----e~~~~k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 80 LKDADLVIEAAT----ENMDLKKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred hccCCeeeeccc----ccHHHHHHHHHHHHhhCCCCcEE
Confidence 134687775421 11122347889999999988777
No 472
>PRK08507 prephenate dehydrogenase; Validated
Probab=21.48 E-value=3.5e+02 Score=25.69 Aligned_cols=80 Identities=13% Similarity=0.156 Sum_probs=44.6
Q ss_pred EEEcCCc--chHHHHHHHcCC--EEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 241 LDIGGGV--ATFAVRMMERNI--TIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 241 LDIGCGt--G~~a~~La~~g~--~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
.=||+|. |.++..|.+.|. .+++ .|.+....+.+.+.|.+... .+...+ . . .|+|+..- +...
T Consensus 4 ~iIG~G~mG~sla~~l~~~g~~~~v~~--~d~~~~~~~~~~~~g~~~~~-~~~~~~--~-~-aD~Vilav------p~~~ 70 (275)
T PRK08507 4 GIIGLGLMGGSLGLALKEKGLISKVYG--YDHNELHLKKALELGLVDEI-VSFEEL--K-K-CDVIFLAI------PVDA 70 (275)
T ss_pred EEEccCHHHHHHHHHHHhcCCCCEEEE--EcCCHHHHHHHHHCCCCccc-CCHHHH--h-c-CCEEEEeC------cHHH
Confidence 4567775 456777777774 5666 45544444455555542211 122222 1 2 68887643 2344
Q ss_pred HHHHHHHHHHcccCCcEE
Q 047630 317 LHFLMFDIYRVLRPGGLF 334 (392)
Q Consensus 317 l~~~L~el~RvLKPGG~l 334 (392)
...++.++.. +++|..+
T Consensus 71 ~~~~~~~l~~-l~~~~iv 87 (275)
T PRK08507 71 IIEILPKLLD-IKENTTI 87 (275)
T ss_pred HHHHHHHHhc-cCCCCEE
Confidence 5567888887 8877644
No 473
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=21.38 E-value=2.7e+02 Score=26.02 Aligned_cols=63 Identities=16% Similarity=0.041 Sum_probs=37.7
Q ss_pred EEEcCCc-c-hHHHHHHHcCCEEEEEecCCCchhHHH-HHhcCCccEEEeccCcCC----CCCCcccEEEEc
Q 047630 241 LDIGGGV-A-TFAVRMMERNITIVTTSMNLNGPFNNF-IASRGVVPLYISISQRLP----FFDNTLDIVHSM 305 (392)
Q Consensus 241 LDIGCGt-G-~~a~~La~~g~~vvg~~iD~~a~~~~~-aa~rg~i~~~~~d~~~Lp----f~d~sFDlV~s~ 305 (392)
+=+|||. | ..+..|.+.|..|+.++.|. ..... +...-....++++..+.. ..-..+|++++.
T Consensus 4 iIiG~G~vG~~va~~L~~~g~~Vv~Id~d~--~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 4 IIIGAGRVGRSVARELSEEGHNVVLIDRDE--ERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEECCcHHHHHHHHHHHhCCCceEEEEcCH--HHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 6678876 3 36667777899999966443 44333 332333567777655431 123468888864
No 474
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=21.32 E-value=4.9e+02 Score=25.57 Aligned_cols=101 Identities=13% Similarity=0.192 Sum_probs=59.8
Q ss_pred HHHHHHHcCCEEEEEecCCCchh-HHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhHHHHHH---HHH
Q 047630 250 FAVRMMERNITIVTTSMNLNGPF-NNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMF---DIY 325 (392)
Q Consensus 250 ~a~~La~~g~~vvg~~iD~~a~~-~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l~~~L~---el~ 325 (392)
.+..|.+.|..+++.+.+. .. .+.+.+.|. .......+ .-...|+|+++- .+...++.++. .+.
T Consensus 15 mA~~L~~aG~~v~v~~r~~--~ka~~~~~~~Ga-~~a~s~~e----aa~~aDvVitmv-----~~~~~V~~V~~g~~g~~ 82 (286)
T COG2084 15 MAANLLKAGHEVTVYNRTP--EKAAELLAAAGA-TVAASPAE----AAAEADVVITML-----PDDAAVRAVLFGENGLL 82 (286)
T ss_pred HHHHHHHCCCEEEEEeCCh--hhhhHHHHHcCC-cccCCHHH----HHHhCCEEEEec-----CCHHHHHHHHhCccchh
Confidence 6677777899999855444 44 445555563 11111101 123468888743 34456666774 577
Q ss_pred HcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEE
Q 047630 326 RVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKW 364 (392)
Q Consensus 326 RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w 364 (392)
.-+|||.+++-..... .+...++.+.+++.|..-+.-
T Consensus 83 ~~~~~G~i~IDmSTis--p~~a~~~a~~~~~~G~~~lDA 119 (286)
T COG2084 83 EGLKPGAIVIDMSTIS--PETARELAAALAAKGLEFLDA 119 (286)
T ss_pred hcCCCCCEEEECCCCC--HHHHHHHHHHHHhcCCcEEec
Confidence 7788888776554333 333455788889988766643
No 475
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.31 E-value=5.5e+02 Score=24.79 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=49.7
Q ss_pred cEEEEEcCCc--chHHHHHHHcCCEEEEEecCCCchhHHH-----------HHhcCCcc----------E-EEeccCcCC
Q 047630 238 RIGLDIGGGV--ATFAVRMMERNITIVTTSMNLNGPFNNF-----------IASRGVVP----------L-YISISQRLP 293 (392)
Q Consensus 238 r~VLDIGCGt--G~~a~~La~~g~~vvg~~iD~~a~~~~~-----------aa~rg~i~----------~-~~~d~~~Lp 293 (392)
+.|-=||+|+ +.++..++..|..|+..|.+. ...+. ..++|.+. + ...+.+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE--ELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH--HHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh-
Confidence 3446789885 347778888999999966554 33221 23334211 1 11122211
Q ss_pred CCCCcccEEEEcccccccCCchhHHHHHHHHHHcc-cCCcEEE
Q 047630 294 FFDNTLDIVHSMHVLSNWIPTTLLHFLMFDIYRVL-RPGGLFW 335 (392)
Q Consensus 294 f~d~sFDlV~s~~~l~~~~~~~~l~~~L~el~RvL-KPGG~li 335 (392)
...|+|+-+- . .+.+....++.++.+++ +|+.+|+
T Consensus 83 ---~~~d~ViEav-~---E~~~~K~~l~~~l~~~~~~~~~il~ 118 (286)
T PRK07819 83 ---ADRQLVIEAV-V---EDEAVKTEIFAELDKVVTDPDAVLA 118 (286)
T ss_pred ---CCCCEEEEec-c---cCHHHHHHHHHHHHHhhCCCCcEEE
Confidence 3457777542 2 22244456778888888 7787773
No 476
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=20.87 E-value=2.3e+02 Score=29.96 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=48.2
Q ss_pred EEEEEcCCc-ch-HHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchh
Q 047630 239 IGLDIGGGV-AT-FAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTL 316 (392)
Q Consensus 239 ~VLDIGCGt-G~-~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~ 316 (392)
+|+=+|+|. |. .+..+...|..|+.++.|. .....+...|. .. .+.+.+ -...|+|+..-.-.+
T Consensus 256 tVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp--~~a~~A~~~G~-~~--~~leel---l~~ADIVI~atGt~~------ 321 (476)
T PTZ00075 256 TVVVCGYGDVGKGCAQALRGFGARVVVTEIDP--ICALQAAMEGY-QV--VTLEDV---VETADIFVTATGNKD------ 321 (476)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc--hhHHHHHhcCc-ee--ccHHHH---HhcCCEEEECCCccc------
Confidence 348888886 43 3444444788888866554 22222333341 21 122221 135799987532112
Q ss_pred HHHHH-HHHHHcccCCcEEEEEeec
Q 047630 317 LHFLM-FDIYRVLRPGGLFWLDHFF 340 (392)
Q Consensus 317 l~~~L-~el~RvLKPGG~lii~~~~ 340 (392)
++ .+....+|||++|+-...+
T Consensus 322 ---iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 322 ---IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ---ccCHHHHhccCCCcEEEEcCCC
Confidence 33 4778899999999877554
No 477
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.84 E-value=3.3e+02 Score=27.87 Aligned_cols=93 Identities=13% Similarity=0.179 Sum_probs=55.8
Q ss_pred ccEEEEEcCCcchHHHHHHH-cCC-EEEEEecCCCchhHHH----HHhc-C-CccEEEeccCcCCC-CCCcccEEEEccc
Q 047630 237 IRIGLDIGGGVATFAVRMME-RNI-TIVTTSMNLNGPFNNF----IASR-G-VVPLYISISQRLPF-FDNTLDIVHSMHV 307 (392)
Q Consensus 237 ir~VLDIGCGtG~~a~~La~-~g~-~vvg~~iD~~a~~~~~----aa~r-g-~i~~~~~d~~~Lpf-~d~sFDlV~s~~~ 307 (392)
..+|||.=+|+|.=+++.+. .+. +++.-|++. ...+. +..+ + ....+..|+..+=. ....||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp--~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi--- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISP--KAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI--- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCH--HHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec---
Confidence 45569999999998888876 333 677755443 33332 2222 1 13334445443321 1366887742
Q ss_pred ccccCCchhHHHHHHHHHHcccCCcEEEEEe
Q 047630 308 LSNWIPTTLLHFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 308 l~~~~~~~~l~~~L~el~RvLKPGG~lii~~ 338 (392)
..+..+. -++..+.|.+|.||++.++.
T Consensus 128 -DPFGSPa---PFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 -DPFGSPA---PFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred -CCCCCCc---hHHHHHHHHhhcCCEEEEEe
Confidence 2333333 37888999999999997774
No 478
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=20.82 E-value=1.1e+02 Score=32.01 Aligned_cols=59 Identities=14% Similarity=0.301 Sum_probs=38.6
Q ss_pred cCCcchHHHHHHHcCCEEEEEecCCCchhHHHHHhcCCccEEEe-ccCcCCCCCCcccEEEEcccc
Q 047630 244 GGGVATFAVRMMERNITIVTTSMNLNGPFNNFIASRGVVPLYIS-ISQRLPFFDNTLDIVHSMHVL 308 (392)
Q Consensus 244 GCGtG~~a~~La~~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~-d~~~Lpf~d~sFDlV~s~~~l 308 (392)
|.|-+.+|..|.++|.+|.|.|+.. ..+.+...+.|. +++.+ +.+.+.- -|.|+.+.++
T Consensus 17 G~GMsglA~iL~~~G~~VsGSD~~~-~~~t~~L~~~G~-~i~~gh~~~ni~~----~~~VV~s~Ai 76 (459)
T COG0773 17 GIGMSGLAEILLNLGYKVSGSDLAE-SPMTQRLEALGI-EIFIGHDAENILD----ADVVVVSNAI 76 (459)
T ss_pred cccHHHHHHHHHhCCCceECccccc-cHHHHHHHHCCC-eEeCCCCHHHcCC----CceEEEeccc
Confidence 3455668888999999999988877 447777788884 55544 3343431 2335555555
No 479
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=20.69 E-value=4.9e+02 Score=26.18 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=34.6
Q ss_pred EEEEcCCcch-HHHHHHHc--CCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEE
Q 047630 240 GLDIGGGVAT-FAVRMMER--NITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHS 304 (392)
Q Consensus 240 VLDIGCGtG~-~a~~La~~--g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s 304 (392)
|.=||||.|. ++..+.+. +++++++. |.+....+..+++-.++ ...+.+++. .+..+|+|..
T Consensus 6 VgViG~~~G~~h~~al~~~~~~~eLvaV~-d~~~erA~~~A~~~gi~-~y~~~eell-~d~Di~~V~i 70 (343)
T TIGR01761 6 VVVCGTRFGQFYLAAFAAAPERFELAGIL-AQGSERSRALAHRLGVP-LYCEVEELP-DDIDIACVVV 70 (343)
T ss_pred EEEEeHHHHHHHHHHHHhCCCCcEEEEEE-cCCHHHHHHHHHHhCCC-ccCCHHHHh-cCCCEEEEEe
Confidence 3778888775 44455553 57777633 55445555444442245 345666665 3445666665
No 480
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=20.35 E-value=3.6e+02 Score=19.78 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=28.7
Q ss_pred HHHHHHHcccCCcEEEEEeecccccchHHHHHHHHHHcCCeEEEEE
Q 047630 320 LMFDIYRVLRPGGLFWLDHFFCVGAQLEDVYVPLIESVGFNKLKWV 365 (392)
Q Consensus 320 ~L~el~RvLKPGG~lii~~~~~~~~~l~~~l~~ll~~aGf~~i~w~ 365 (392)
.++...+-|.+|..+.+.. ......+.+..++++.|++.+.++
T Consensus 16 ~~~~~l~~l~~G~~l~v~~---d~~~~~~di~~~~~~~g~~~~~~~ 58 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLV---DDPAAVEDIPRWCEENGYEVVEVE 58 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEE---SSTTHHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEE---CCccHHHHHHHHHHHCCCEEEEEE
Confidence 4566667778888874432 222334558889999999988876
No 481
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=20.26 E-value=5.7e+02 Score=23.84 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=47.2
Q ss_pred EEEcC--CcchHHHHHHH-cCCEEEEEecCCCchhHHHHHhcCCccEEEeccCcCCCCCCcccEEEEcccccccCCchhH
Q 047630 241 LDIGG--GVATFAVRMME-RNITIVTTSMNLNGPFNNFIASRGVVPLYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLL 317 (392)
Q Consensus 241 LDIGC--GtG~~a~~La~-~g~~vvg~~iD~~a~~~~~aa~rg~i~~~~~d~~~Lpf~d~sFDlV~s~~~l~~~~~~~~l 317 (392)
|=.|+ +.|..+..+++ .|..+++++ .+......+.+.|. ........++ .++.+|+++.... .
T Consensus 137 li~g~~~~~g~~~~~~a~~~g~~v~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~--~~~~~d~vl~~~g--~------- 202 (305)
T cd08270 137 LVTGASGGVGRFAVQLAALAGAHVVAVV--GSPARAEGLRELGA-AEVVVGGSEL--SGAPVDLVVDSVG--G------- 202 (305)
T ss_pred EEECCCcHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHcCC-cEEEeccccc--cCCCceEEEECCC--c-------
Confidence 66666 45666666665 688887744 22344445555553 2222111222 2346888885421 1
Q ss_pred HHHHHHHHHcccCCcEEEEEe
Q 047630 318 HFLMFDIYRVLRPGGLFWLDH 338 (392)
Q Consensus 318 ~~~L~el~RvLKPGG~lii~~ 338 (392)
..+.+..+.|+++|.++...
T Consensus 203 -~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 203 -PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred -HHHHHHHHHhcCCCEEEEEe
Confidence 14578889999999987553
No 482
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.01 E-value=2.1e+02 Score=25.47 Aligned_cols=46 Identities=9% Similarity=0.161 Sum_probs=29.2
Q ss_pred HHHHHHHHHcccCCcEEEEEe--ecccccchHHHHHHHHHHcCCeEEE
Q 047630 318 HFLMFDIYRVLRPGGLFWLDH--FFCVGAQLEDVYVPLIESVGFNKLK 363 (392)
Q Consensus 318 ~~~L~el~RvLKPGG~lii~~--~~~~~~~l~~~l~~ll~~aGf~~i~ 363 (392)
+.+++.+.+.++||.++++.+ ......+....+.+.+++.||+.+.
T Consensus 139 ~~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vt 186 (191)
T TIGR02764 139 ESIVDRVVKNTKPGDIILLHASDSAKQTVKALPTIIKKLKEKGYEFVT 186 (191)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEE
Confidence 357777888899988776663 1111112234467778888998765
Done!