Your job contains 1 sequence.
>047631
MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSW
EYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDELYDANVDGGHGSDSSS
GNAEATVSKRRKAKKRSKSRAKDEVSPGTVKLSGGEGASTDGSVEWASKELLDLVMHMRN
GDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESH
FLTKEDSQVDELQGSVVDTEANLLEADGSSDALVKGGKDKKRKTRKKGDHRGLQSNVDDY
AAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGT
SKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLT
VGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLKTP
EERQRRLEEIPEIHSDPNMDPSYESEEDDGETDDKRQDYMRPRGSGFSRRGREPISPGKG
GSFSNDSLSGTRNYSGGIKDLTRNISNKGFSNKGDDLVGGGEIVNESLWNQARDRETEQF
NSWDKPRTALNLETGARNNSVVLSESISRAVAEKSPASASTGVTQSAPKINESEKIWHYQ
DPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHKDPRLVDI
SLSQTIPYSGKSHGASSQPGMETPVGGSSNFDQNRTAWNQHGTPGSSGQSGGTPSLELPK
QYRDGWASETNLPSPTPTQSTAGEIKGKTFEKEWSPTPNNQPGSLMVTNLFPGNVGKQSP
PATGLETGQSPNFSTSSSASKLSVNVDGLNITHGVTSASKPETVESQRVLVSPHQLPASS
SVVASVNPGVDIKSIGANLQTLVQSVSANVTPVESHGWGSGLAARPEMMAPSPKPVTGAQ
GWGSASSQKLEPNNPVSIPAQSPAYAQPYASTFNTGNSPGVFPVSGQSGMPASDSWRAPV
PSQSNVQSPAQPITPWGMGVAGNQSAVPRQVPESQNTGWGQMPANPSMGWGGQLPASTNM
NWGAPAQGQAPGNAHSGWAGPAQGQAHKNAVPGWAPPGQGPSPVNANTGWVAPGQGPPPG
NGNPGWGAPAGNPGMWGSDQNNGGDRFSNQRDRGSHGGDSGYGGGRPWNRQPSFGSRGGD
SSRPHFNKGQRVCKFHESGHCKKGSQCDYLHT
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047631
(1232 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2827287 - symbol:NERD "Needed for RDR2-indepen... 1966 3.0e-205 2
TAIR|locus:2080863 - symbol:AT3G51120 species:3702 "Arabi... 773 9.3e-148 5
TAIR|locus:2060949 - symbol:AT2G18090 "AT2G18090" species... 548 9.3e-71 3
TAIR|locus:2150828 - symbol:AT5G08430 species:3702 "Arabi... 446 8.7e-53 2
TAIR|locus:2154473 - symbol:AT5G23480 species:3702 "Arabi... 254 4.5e-18 1
TAIR|locus:2116189 - symbol:AT4G34290 "AT4G34290" species... 121 3.1e-06 1
UNIPROTKB|Q5RAD5 - symbol:RTF1 "RNA polymerase-associated... 146 3.1e-06 1
UNIPROTKB|Q92541 - symbol:RTF1 "RNA polymerase-associated... 146 3.4e-06 1
UNIPROTKB|E2RPD2 - symbol:RTF1 "Uncharacterized protein" ... 146 3.4e-06 1
MGI|MGI:1309480 - symbol:Rtf1 "Rtf1, Paf1/RNA polymerase ... 146 3.5e-06 1
TAIR|locus:2060469 - symbol:AT2G14880 "AT2G14880" species... 119 5.0e-06 1
UNIPROTKB|D4A6Z3 - symbol:Rtf1 "Protein Rtf1" species:101... 144 5.7e-06 1
POMBASE|SPBC651.09c - symbol:SPBC651.09c "RNA polymerase ... 144 9.4e-06 2
UNIPROTKB|F1N6E9 - symbol:RTF1 "Uncharacterized protein" ... 141 1.2e-05 1
ZFIN|ZDB-GENE-030131-6778 - symbol:rtf1 "Rtf1, Paf1/RNA p... 137 3.4e-05 1
POMBASE|SPAC4F10.13c - symbol:mpd2 "GYF domain protein" s... 137 4.9e-05 1
UNIPROTKB|Q5ZKE3 - symbol:RTF1 "Uncharacterized protein" ... 140 0.00015 2
UNIPROTKB|F1SSV6 - symbol:RTF1 "Uncharacterized protein" ... 141 0.00015 2
UNIPROTKB|I3LJZ5 - symbol:RTF1 "Uncharacterized protein" ... 141 0.00016 2
UNIPROTKB|F1NY87 - symbol:RTF1 "Uncharacterized protein" ... 140 0.00024 2
TAIR|locus:2028671 - symbol:AT1G31760 "AT1G31760" species... 103 0.00026 1
TAIR|locus:505006294 - symbol:AT2G35605 "AT2G35605" speci... 102 0.00033 1
TAIR|locus:2116302 - symbol:AT4G26810 "AT4G26810" species... 99 0.00068 1
>TAIR|locus:2827287 [details] [associations]
symbol:NERD "Needed for RDR2-independent DNA methylation"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0042393
"histone binding" evidence=IDA] InterPro:IPR000571
InterPro:IPR001965 InterPro:IPR003121 InterPro:IPR003169
InterPro:IPR004343 InterPro:IPR018144 InterPro:IPR019787
Pfam:PF00642 Pfam:PF02201 Pfam:PF02213 Pfam:PF03126 PROSITE:PS50016
PROSITE:PS50103 PROSITE:PS50829 PROSITE:PS51360 SMART:SM00249
SMART:SM00444 SMART:SM00719 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006352 GO:GO:0016570 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 eggNOG:NOG12793
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0031047 GO:GO:0042393
SUPFAM:SSF55277 EMBL:AC007047 EMBL:DQ446507 IPI:IPI00546025
PIR:F84540 PIR:G84540 RefSeq:NP_179241.4 UniGene:At.40269
HSSP:Q9FT92 PaxDb:Q9SIV5 PRIDE:Q9SIV5 GeneID:816147
KEGG:ath:AT2G16485 TAIR:At2g16485 HOGENOM:HOG000215989
InParanoid:Q9SIV5 ArrayExpress:Q9SIV5 Genevestigator:Q9SIV5
GO:GO:0032776 GO:GO:0010964 SUPFAM:SSF47592 Uniprot:Q9SIV5
Length = 1773
Score = 1966 (697.1 bits), Expect = 3.0e-205, Sum P(2) = 3.0e-205
Identities = 480/1126 (42%), Positives = 617/1126 (54%)
Query: 3 YTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVML--IERNE----------------Q 44
+ C + LC C K A LC C+ C K + I N+ Q
Sbjct: 641 WNCGWHLCSKCEKTATYLCYTCMFSLCKGCAKDAVFFCIRGNKGLCETCMETVKLIERKQ 700
Query: 45 GNKETAQVDFDDKNSWEYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDE 104
KE AQ+DF+DK SWEYLFKDYW+DLK +LSLS +EL +AK P KG +T+A KQ + E
Sbjct: 701 QEKEPAQLDFNDKTSWEYLFKDYWIDLKTQLSLSPEELDQAKRPLKGHETNASKQGTASE 760
Query: 105 LYDANVXXXXXXXXXXXNAEATVXXXXXXXXXXXXXXXDEVSPGTVKLSGGEGASTDGSV 164
D V T +++ LS G+ +D ++
Sbjct: 761 T-DY-VTDGGSDSDSSPKKRKT-------RSRSKSGSAEKI------LSSGDKNLSDETM 805
Query: 165 EWASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFG 224
EWASKELLDLV+HMR GD+S L +VQTLLL YIK+Y LRDP+R++ VICD+RLQNLFG
Sbjct: 806 EWASKELLDLVVHMRRGDRSFLPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFG 865
Query: 225 KPRVGHFEMLKLLESHFLTKEDSQVDELQGSVVDTEA-NLLEADGSSDALVXXXXXXXXX 283
K VGHFEML LL+SHFL KE +Q D++QG +VDTE N ++ D + D V
Sbjct: 866 KSHVGHFEMLNLLDSHFLKKEQNQADDIQGDIVDTEEPNHVDVDENLDHPVKSGKDKKRK 925
Query: 284 XXXXXXXXXLQSNVDDYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISG 343
QSN+DD+AA+DMHNINLIYLRR+ VE+LLED+ F +KV F R+RISG
Sbjct: 926 TRKKNVRKGRQSNLDDFAAVDMHNINLIYLRRSLVEDLLEDSTAFEEKVASAFVRLRISG 985
Query: 344 SAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDE 403
+ QKQDLYRLVQV GTSK EPYKVGK+TTD +LEILNL+KTEVISIDIISNQ+FTEDE
Sbjct: 986 N--QKQDLYRLVQVVGTSKAPEPYKVGKKTTDYVLEILNLDKTEVISIDIISNQDFTEDE 1043
Query: 404 CKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEY 463
CKRL+QSIKCGLINRLTVGDIQEKA+ALQEVRVK+ +EAEILR SHLRDRASD+GRRKEY
Sbjct: 1044 CKRLKQSIKCGLINRLTVGDIQEKAIALQEVRVKNLLEAEILRFSHLRDRASDMGRRKEY 1103
Query: 464 PLLYE-----------ECVEKLQLLKTPEERQRRLEEIPEIHSDPNMDPSYESEEDDGET 512
P L + ECVEKLQLLK+PEERQRRLEEIPEIH+DP MDP ESE++D +
Sbjct: 1104 PYLLKLSNSLTMLTLRECVEKLQLLKSPEERQRRLEEIPEIHADPKMDPDCESEDEDEKE 1163
Query: 513 DDKRQDYMXXXXXXXXXXXXEPISPGKGGSFSNDSLSGTRNYSG--GIKDLTRNISNKGF 570
+ +++ + +PISP KGG SN+S +GT NYS ++L+R+ S +G
Sbjct: 1164 EKEKEKQLRPRSSSFNRRGRDPISPRKGGFSSNESWTGTSNYSNTSANRELSRSYSGRGS 1223
Query: 571 SNKGDDLVGGGEIVNESLWNQARDRETEQFNSWDKPRTALNLETGARNNSVVLSESISRA 630
+ +GD L + V++S+W AR+RE + +KPR+ ET AR++ + +S
Sbjct: 1224 TGRGDYLGSSDDKVSDSMWTSAREREVQPSLGSEKPRSVSIPETPARSSRAIAPPELSPR 1283
Query: 631 VAEKSPASASTGVTQSAPKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRI 690
+A + + V+Q PK N+SEKIWHY+DPSGKVQGPFSM QLRKWNNTGYFPA L I
Sbjct: 1284 IASEISMAPPAVVSQPVPKSNDSEKIWHYKDPSGKVQGPFSMAQLRKWNNTGYFPAKLEI 1343
Query: 691 WRSNEKQDDSILLTDALAGKFHKDPRLVDISL--SQTIPYSGKSHGASSQPGMETPVGGS 748
W++NE DS+LLTDALAG F K + VD S +Q +SG+S + S+P + G +
Sbjct: 1344 WKANESPLDSVLLTDALAGLFQKQTQAVDNSYMKAQVAAFSGQS--SQSEPNL----GFA 1397
Query: 749 SNFDQNRTAWNQHXXXXXXXXXXXXXXLELPKQYRDGWASETNLPSPTPTQSTAGEIKGK 808
+ R A +E+P+ +D W+ +LPSPTP Q T K +
Sbjct: 1398 A-----RIA---------------PTTIEIPRNSQDTWSQGGSLPSPTPNQITTPTAKRR 1437
Query: 809 TFEKEWSPT-PN----NQPGSLMVTNLFPGNVGKQSPPATGLETGQ-SPNFSTSSSASKL 862
FE WSPT P+ NQ + V + P G P + +
Sbjct: 1438 NFESRWSPTKPSPQSANQSMNYSVAQSGQSQTSRIDIPVVVNSAGALQPQTYPIPTPDPI 1497
Query: 863 SVNVDGLNITHGVTSASKPETVESQRVLVSPHQLPXXXXXXXXXN-PGVDIKSIGANLQT 921
+V+V+ H T A ++ S + P P + +
Sbjct: 1498 NVSVNHSATLHSPTPAGGKQSWGSMQTDHGGSNTPSSQNNSTSYGTPSPSVLP-SQSQPG 1556
Query: 922 LVQSVSANVT-PVESHG-----WGSGLAARPEMMAPSPKPVTGAQGWGSASSQKLEPN-- 973
S S V P + + WG + + A P WG + + PN
Sbjct: 1557 FPPSDSWKVAVPSQPNAQAQAQWGMNMVNNNQNSAQPQAPANQNSSWGQGT---VNPNMG 1613
Query: 974 --NPVSIXXXXXXXXXXXXXTFNTGNSPG-VFPVSGQSGMPASDSWRAPVPSQSNVQSPA 1030
P T G V PV GQ+ + W QS QS
Sbjct: 1614 WVGPAQTGVNVNWGGSSVPSTVQGITHSGWVAPVQGQTQAYPNPGWGPTGHPQSQSQSQV 1673
Query: 1031 QPITPWGMGVAGNQSAVPRQVPESQNTG--WG--QMPANPSMGWGG 1072
Q G G+ P Q +S N+ WG A PS G GG
Sbjct: 1674 QAQA----GTTGSGWMQPGQGIQSGNSNQNWGTQNQTAIPSGGSGG 1715
Score = 904 (323.3 bits), Expect = 2.1e-128, Sum P(3) = 2.1e-128
Identities = 184/348 (52%), Positives = 229/348 (65%)
Query: 1 MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSW 60
+CYTC FSLCKGC KDAV C+RGNKG CETCM+TV LIER +Q KE AQ+DF+DK SW
Sbjct: 658 LCYTCMFSLCKGCAKDAVFFCIRGNKGLCETCMETVKLIERKQQ-EKEPAQLDFNDKTSW 716
Query: 61 EYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDELYDANVXXXXXXXXXX 120
EYLFKDYW+DLK +LSLS +EL +AK P KG +T+A KQ + E D V
Sbjct: 717 EYLFKDYWIDLKTQLSLSPEELDQAKRPLKGHETNASKQGTASET-DY-VTDGGSDSDSS 774
Query: 121 XNAEATVXXXXXXXXXXXXXXXDEVSPGTVKLSGGEGASTDGSVEWASKELLDLVMHMRN 180
T +++ LS G+ +D ++EWASKELLDLV+HMR
Sbjct: 775 PKKRKT-------RSRSKSGSAEKI------LSSGDKNLSDETMEWASKELLDLVVHMRR 821
Query: 181 GDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESH 240
GD+S L +VQTLLL YIK+Y LRDP+R++ VICD+RLQNLFGK VGHFEML LL+SH
Sbjct: 822 GDRSFLPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGKSHVGHFEMLNLLDSH 881
Query: 241 FLTKEDSQVDELQGSVVDTEA-NLLEADGSSDALVXXXXXXXXXXXXXXXXXXLQSNVDD 299
FL KE +Q D++QG +VDTE N ++ D + D V QSN+DD
Sbjct: 882 FLKKEQNQADDIQGDIVDTEEPNHVDVDENLDHPVKSGKDKKRKTRKKNVRKGRQSNLDD 941
Query: 300 YAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQ 347
+AA+DMHNINLIYLRR+ VE+LLED+ F +KV F R+RISG+ Q
Sbjct: 942 FAAVDMHNINLIYLRRSLVEDLLEDSTAFEEKVASAFVRLRISGNQKQ 989
Score = 384 (140.2 bits), Expect = 2.1e-128, Sum P(3) = 2.1e-128
Identities = 101/292 (34%), Positives = 121/292 (41%)
Query: 952 SPKPVTGAQGWGSASSQKLEPNNPVSIXXXXXXXXXXXXXTFNTGNSPGVFPVSGQSGMP 1011
SP P G Q WGS + N P S ++ T SP V P Q G P
Sbjct: 1509 SPTPAGGKQSWGSMQTDHGGSNTPSS---------QNNSTSYGTP-SPSVLPSQSQPGFP 1558
Query: 1012 ASDSWRAPVPSQSNVQSPAQPITPWGMG-VAGNQSAVPRQVPESQNTGWGQMPANPSMGW 1070
SDSW+ VPSQ N Q+ AQ WGM V NQ++ Q P +QN+ WGQ NP+MGW
Sbjct: 1559 PSDSWKVAVPSQPNAQAQAQ----WGMNMVNNNQNSAQPQAPANQNSSWGQGTVNPNMGW 1614
Query: 1071 GGQLPASTNMNWXXXXXXXXXXN-AHSGWAGPAQGQAHKNAVPGWAPPG----QGPSPVN 1125
G N+NW HSGW P QGQ PGW P G Q S V
Sbjct: 1615 VGPAQTGVNVNWGGSSVPSTVQGITHSGWVAPVQGQTQAYPNPGWGPTGHPQSQSQSQVQ 1674
Query: 1126 AN-----TGWVXXXXXXXXXXXXXXXXXXXXXXXMWGSDQNNGGDRFSNQXXXXXXXXXX 1180
A +GW+ G N + NQ
Sbjct: 1675 AQAGTTGSGWMQPGQGIQSGNSNQNWGTQNQTAIPSGGSGGNQAGYWGNQQQSQNGDSGY 1734
Query: 1181 XXXXXXPWNRQPSFGSRGGDSSRPHFNKGQRVCKF-HESGHCKKGSQCDYLH 1231
WNRQ GG + +F KGQRVCKF E+GHC+KG+ C+YLH
Sbjct: 1735 G------WNRQS-----GGQQN--NF-KGQRVCKFFRENGHCRKGASCNYLH 1772
Score = 42 (19.8 bits), Expect = 3.0e-205, Sum P(2) = 3.0e-205
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 1 MCYTC----TFSLC--KGCTKDAVILCVRGNKGFCET 31
+C+ C LC +GCTK CV ++ F +T
Sbjct: 601 VCFMCFDGGDLVLCDRRGCTKAYHPSCVDRDEAFFQT 637
Score = 42 (19.8 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 238 ESHFLTKEDSQVDELQGSVVD--TEANLLEADGSSD 271
E+ L+KE +QVDE + S + TE + + D D
Sbjct: 418 ENQELSKELAQVDETKISEMSEVTETMIKDEDQEKD 453
Score = 40 (19.1 bits), Expect = 4.8e-205, Sum P(2) = 4.8e-205
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 40 ERNEQGNKETAQVD 53
E N++ +KE AQVD
Sbjct: 417 EENQELSKELAQVD 430
Score = 38 (18.4 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 24/131 (18%), Positives = 56/131 (42%)
Query: 390 SIDIISNQEFTEDECKRLRQ--SIKCGLINRLTVGDI----QEKAMALQEVR--VKDWME 441
++D+ +E ++ K L Q K ++ +T I QEK + ++ V++ +
Sbjct: 409 TVDLEEIREENQELSKELAQVDETKISEMSEVTETMIKDEDQEKDDNMTDLAEDVENHRD 468
Query: 442 AEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLKTPEERQRRLEEIPEIHSDPNMDP 501
+ + + R+ D+G + V++ ++ + EE R+E+ + D M
Sbjct: 469 SSVADIEEGREDHEDMGVTETQKETVLGKVDRTKIAEVSEETDTRIEDEDQ-EKDDEMTD 527
Query: 502 SYESEEDDGET 512
E + G++
Sbjct: 528 VAEDVKTHGDS 538
>TAIR|locus:2080863 [details] [associations]
symbol:AT3G51120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016570 "histone
modification" evidence=IEA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=RCA] InterPro:IPR000571 InterPro:IPR001965
InterPro:IPR003121 InterPro:IPR003169 InterPro:IPR004343
InterPro:IPR018144 InterPro:IPR019787 Pfam:PF00642 Pfam:PF02201
Pfam:PF02213 Pfam:PF03126 PROSITE:PS50016 PROSITE:PS50103
PROSITE:PS50829 PROSITE:PS51360 SMART:SM00249 SMART:SM00719
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006352 GO:GO:0016570
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 eggNOG:NOG12793 InterPro:IPR019786 PROSITE:PS01359
SUPFAM:SSF55277 SUPFAM:SSF47592 EMBL:AL132980 IPI:IPI00542687
PIR:T45743 RefSeq:NP_190681.6 UniGene:At.858 HSSP:O43918
ProteinModelPortal:Q9SD34 SMR:Q9SD34 PaxDb:Q9SD34 PRIDE:Q9SD34
EnsemblPlants:AT3G51120.1 GeneID:824276 KEGG:ath:AT3G51120
TAIR:At3g51120 HOGENOM:HOG000177620 InParanoid:Q9SD34 OMA:ESEIWHY
Genevestigator:Q9SD34 Uniprot:Q9SD34
Length = 1292
Score = 773 (277.2 bits), Expect = 9.3e-148, Sum P(5) = 9.3e-148
Identities = 163/297 (54%), Positives = 200/297 (67%)
Query: 162 GSVEWASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQN 221
G WA+KELL+ V M+NGD S LSQFDVQ LLL+YIKK LRDP +++ V+CD L
Sbjct: 315 GDTSWATKELLEFVSFMKNGDTSVLSQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQMLVK 374
Query: 222 LFGKPRVGHFEMLKLLESHFLTKEDSQ-VDELQGSVVDTEANLLEADGSSDALVXXXXXX 280
LFGK RVGHFEMLKLLESH L +E + G + +E D D +V
Sbjct: 375 LFGKQRVGHFEMLKLLESHVLIQEKPKGAKTTNGETTHAVPSQIEEDSVHDPMVRDRRRK 434
Query: 281 XXXXXXXXXXXXLQSNVDDYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIR 340
N+D YAAID+HNINLIYLRR F+E LL+D +KVVGT RI+
Sbjct: 435 MRRKTDGRVQ---NENLDAYAAIDVHNINLIYLRRKFLESLLDDINKVDEKVVGTILRIK 491
Query: 341 ISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFT 400
+SGS QK D++RLVQV GTSK Y++G +TTD++LEILNL+K EVISID +S+Q T
Sbjct: 492 VSGS-DQKLDIHRLVQVVGTSKAIASYQLGAKTTDVMLEILNLDKREVISIDQLSDQNIT 550
Query: 401 EDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDL 457
EDECKRLRQSIKCGL RLTV DI + A LQ +R+ + +EAEIL+L+HLRDRA L
Sbjct: 551 EDECKRLRQSIKCGLNKRLTVVDILKTAATLQAMRINEALEAEILKLNHLRDRAKKL 607
Score = 332 (121.9 bits), Expect = 9.3e-148, Sum P(5) = 9.3e-148
Identities = 63/104 (60%), Positives = 72/104 (69%)
Query: 1 MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSW 60
MCYTCTFS+CK C KDA + VRGN G C TC+K +MLIE QG+ E +VDFDDK SW
Sbjct: 169 MCYTCTFSVCKRCIKDADYVIVRGNMGLCGTCIKPIMLIENIAQGDNEAVKVDFDDKLSW 228
Query: 61 EYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDE 104
EYLFK YWL LK LSL+ DEL RA NPWK A K S ++
Sbjct: 229 EYLFKVYWLCLKEELSLTVDELTRANNPWKEVPNTAPKVESQND 272
Score = 259 (96.2 bits), Expect = 9.3e-148, Sum P(5) = 9.3e-148
Identities = 50/91 (54%), Positives = 64/91 (70%)
Query: 645 QSAPKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLT 704
Q K +E +IWHY+DP+GK QGPFSMVQLR+W ++G+FP LRIWR++E QD+S+LLT
Sbjct: 707 QETGKDDEESEIWHYRDPTGKTQGPFSMVQLRRWKSSGHFPPYLRIWRAHENQDESVLLT 766
Query: 705 DALAGKFHKDPRLVDIS-LSQTIPYSGKSHG 734
DALAG+F K L S L Q + S G
Sbjct: 767 DALAGRFDKATTLPSSSSLPQELKPSPHDSG 797
Score = 147 (56.8 bits), Expect = 9.3e-148, Sum P(5) = 9.3e-148
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 472 EKLQLLKTPEERQRRLEEIPEIHSDPNMDPSYESEEDDGETDDKRQD 518
+KL+LLK+PEERQR L+E+PE+H+DP+MDPS+ ED G ++QD
Sbjct: 605 KKLELLKSPEERQRLLQEVPEVHTDPSMDPSHALSEDAG-LGTRKQD 650
Score = 106 (42.4 bits), Expect = 9.3e-148, Sum P(5) = 9.3e-148
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 1188 WNRQPSFG-SRGGDSSRPHFNKGQRVCKFHESGHCKKGSQCDYLH 1231
W S G G S H KG ++CKF+ESG+CK+G+ C + H
Sbjct: 1247 WPYSNSHGYDHGSGSYAAHPPKGLKICKFYESGYCKRGASCSFWH 1291
Score = 54 (24.1 bits), Expect = 1.2e-118, Sum P(5) = 1.2e-118
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 3 YTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTV-MLIERNEQG 45
+ C + +C C K + +C C+ C+K +I R G
Sbjct: 152 WNCGWHICGTCQKASSYMCYTCTFSVCKRCIKDADYVIVRGNMG 195
Score = 43 (20.2 bits), Expect = 7.3e-137, Sum P(5) = 7.3e-137
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 542 SFSNDSLSGTRNYSGGIKDLTRNISNKG--FSNKGDDL 577
+ S D+ GTR +K ++ NKG +N G+++
Sbjct: 637 ALSEDAGLGTRKQDNHVKAQSKGPQNKGVNLNNVGNNV 674
Score = 41 (19.5 bits), Expect = 6.2e-125, Sum P(5) = 6.2e-125
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 608 TALNL--ETGARNNSVV-LSESISRAVAEKSPASAST-------GVTQSAPKINESEK 655
TAL L ET +V L +S+ +E SP S S+ G T+ +P++++ ++
Sbjct: 1162 TALRLGSETTVEAGTVERLPKSVLGVSSEPSPRSLSSHDSSSARGSTERSPRVSQPKR 1219
Score = 38 (18.4 bits), Expect = 1.3e-124, Sum P(5) = 1.3e-124
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 907 NPGVDIKSIGANLQ 920
N GV++ ++G N+Q
Sbjct: 662 NKGVNLNNVGNNVQ 675
Score = 37 (18.1 bits), Expect = 1.6e-124, Sum P(5) = 1.6e-124
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 704 TDALAGKFHKDPRLVDISLSQTIPYSGKSHGASSQPG 740
T AG + P+ V S+ P S SH +SS G
Sbjct: 1170 TTVEAGTVERLPKSVLGVSSEPSPRSLSSHDSSSARG 1206
>TAIR|locus:2060949 [details] [associations]
symbol:AT2G18090 "AT2G18090" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003121
InterPro:IPR003169 InterPro:IPR019787 Pfam:PF02201 Pfam:PF02213
PROSITE:PS50016 PROSITE:PS50829 SMART:SM00249 SMART:SM00444
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 SUPFAM:SSF55277
SUPFAM:SSF47592 HSSP:Q14839 EMBL:AF370586 IPI:IPI00535357
RefSeq:NP_849971.1 UniGene:At.13556 ProteinModelPortal:Q94JX1
SMR:Q94JX1 PaxDb:Q94JX1 PRIDE:Q94JX1 EnsemblPlants:AT2G18090.1
GeneID:816321 KEGG:ath:AT2G18090 TAIR:At2g18090 eggNOG:NOG281195
HOGENOM:HOG000151186 OMA:TATIAND PhylomeDB:Q94JX1
ProtClustDB:CLSN2690760 Genevestigator:Q94JX1 Uniprot:Q94JX1
Length = 824
Score = 548 (198.0 bits), Expect = 9.3e-71, Sum P(3) = 9.3e-71
Identities = 113/276 (40%), Positives = 161/276 (58%)
Query: 1 MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSW 60
MCYTC +S+CK C + + + VR NKGFC CMKT+MLIE + NKE QVDFDD+ SW
Sbjct: 138 MCYTCPYSVCKRCVRSSEYVVVRENKGFCGICMKTIMLIENAAEANKEKVQVDFDDQGSW 197
Query: 61 EYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDELYDANVXXXXXXXXXX 120
EYLFK YW+ LK +L LS D+L +AKNPWK S + A K+ + +++ +
Sbjct: 198 EYLFKIYWVSLKEKLGLSLDDLTKAKNPWKSSSSTAAKRRTTSRVHEKD----------D 247
Query: 121 XNAEATVXXXXXXXXXXXXXXXDEVSPGT-VKLSGGEGA-STDGSVEWASKELLDLVMHM 178
N+ + + P S G+ + WA+ ELLD V +M
Sbjct: 248 GNSPGVMKIRRAKVRKMDAVSVSNLGPSLDSNCSLGDRLPQLTSAATWATNELLDFVGYM 307
Query: 179 RNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLE 238
+NGD S LS++DVQTL+LEY+++ L++ + + ++CD++L LFGK RV + EMLKLL+
Sbjct: 308 KNGDISVLSKYDVQTLVLEYVRRNNLQNSPQNSEIMCDSKLMRLFGKERVDNLEMLKLLD 367
Query: 239 SHFLTKEDSQV-DELQGSVVDTEANLLEADGSSDAL 273
SHF+ + S V D G V +T + + A S D L
Sbjct: 368 SHFIDQVRSPVTDNSAGGVTETMSYQVNAGRSCDRL 403
Score = 231 (86.4 bits), Expect = 9.3e-71, Sum P(3) = 9.3e-71
Identities = 54/149 (36%), Positives = 84/149 (56%)
Query: 575 DDLVGGGEIVNESLWNQAR-DRETEQFNSWDKPRTALNLETGARNNSVVLSESISRAVAE 633
D+ GG V E++ Q R ++ N+ ++ + + + + V S S SR A
Sbjct: 380 DNSAGG---VTETMSYQVNAGRSCDRLNTSEQHQEGESQQLNGHSIQVRPSSSDSRNHAV 436
Query: 634 KSPASASTGVTQSAPKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRS 693
P +++T + + ++ +W Y DP GK+ GPFS+ LR+WN++G+FP LRIWR
Sbjct: 437 VKPDTSATLSNKPIDGL-DTNMVWLYGDPDGKIHGPFSLYNLRQWNSSGHFPPELRIWRL 495
Query: 694 NEKQDDSILLTDALAGKFHKDPRLVDISL 722
E+Q SILLTDAL G+FHK L + S+
Sbjct: 496 GEQQHSSILLTDALNGQFHKTGLLQNHSI 524
Score = 60 (26.2 bits), Expect = 7.2e-17, Sum P(4) = 7.2e-17
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 3 YTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTV-MLIERNEQG 45
+ C + +C C KD+ +C C+ C+++ ++ R +G
Sbjct: 121 WNCGWHICTTCQKDSFYMCYTCPYSVCKRCVRSSEYVVVRENKG 164
Score = 51 (23.0 bits), Expect = 9.3e-71, Sum P(3) = 9.3e-71
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 790 TNLPSPTPTQSTAGEIKGKTFEKEWSPTPNNQPGSLMVTNLFPGNVGKQSPPATGLETGQ 849
+N P + +AG+ G + + T NQ GSL G+ KQ AT GQ
Sbjct: 637 SNCSLPPHERWSAGQTDGNSA----ATTACNQNGSLS------GSAEKQVT-ATVQSCGQ 685
Query: 850 SPNFSTSSSASKLSVNVDGL 869
+ N +T SSAS + + GL
Sbjct: 686 NWNAATPSSASNVWDSNSGL 705
Score = 45 (20.9 bits), Expect = 7.2e-17, Sum P(4) = 7.2e-17
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 304 DMHNINLIYLRRNFVEELLEDTETFHD-KVVGTFARIRI 341
D+ + L Y+RRN ++ +++E D K++ F + R+
Sbjct: 319 DVQTLVLEYVRRNNLQNSPQNSEIMCDSKLMRLFGKERV 357
Score = 40 (19.1 bits), Expect = 1.3e-69, Sum P(3) = 1.3e-69
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 788 SETNLPSPTPTQSTAGEIKGK-TFEKEWSPTPNNQP 822
S+ LPSPT T E+ + + +SP + P
Sbjct: 761 SQKRLPSPTSTFRGPEELLIRHSINDSFSPAEGHSP 796
Score = 37 (18.1 bits), Expect = 1.9e-50, Sum P(3) = 1.9e-50
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 433 EVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLKTPEERQRRLEEIPE 492
E+R+ W E S L A + G+ + LL + K ++ T Q R +P+
Sbjct: 489 ELRI--WRLGEQQHSSILLTDALN-GQFHKTGLLQNHSIPKQEVTATIANDQNRSVAVPK 545
Query: 493 IHS 495
I S
Sbjct: 546 IES 548
>TAIR|locus:2150828 [details] [associations]
symbol:AT5G08430 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0016570 "histone modification"
evidence=IEA] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0010050 "vegetative phase change"
evidence=RCA] [GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR003121 InterPro:IPR003169 InterPro:IPR004343
InterPro:IPR018144 Pfam:PF02201 Pfam:PF02213 Pfam:PF03126
PROSITE:PS50829 PROSITE:PS51360 SMART:SM00719 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006352
GO:GO:0016570 SUPFAM:SSF55277 SUPFAM:SSF47592 EMBL:AL392174
EMBL:AY069913 IPI:IPI00535131 RefSeq:NP_196460.2 UniGene:At.44146
PDB:1V32 PDB:1WH2 PDBsum:1V32 PDBsum:1WH2 ProteinModelPortal:Q9FT92
SMR:Q9FT92 EnsemblPlants:AT5G08430.1 GeneID:830742
KEGG:ath:AT5G08430 TAIR:At5g08430 eggNOG:NOG292743
HOGENOM:HOG000065925 InParanoid:Q9FT92 OMA:DITWVEE PhylomeDB:Q9FT92
ProtClustDB:CLSN2690894 EvolutionaryTrace:Q9FT92
Genevestigator:Q9FT92 GermOnline:AT5G08430 Uniprot:Q9FT92
Length = 553
Score = 446 (162.1 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 123/418 (29%), Positives = 211/418 (50%)
Query: 300 YAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTG 359
+AAI NI L+YLR++ V+ELL+ +TF K++G+F RI+ + + ++ Y+LVQVTG
Sbjct: 148 FAAIVSDNIKLLYLRKSLVQELLKSPDTFEGKMLGSFVRIKSDPNDYLQKYPYQLVQVTG 207
Query: 360 TSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRL 419
K + G T D LL++ N K +SI ++S+ F+++EC+ L Q IK GL+ +
Sbjct: 208 VKK-----EHG--TDDFLLQVTNYVKD--VSISVLSDDNFSQEECEDLHQRIKNGLLKKP 258
Query: 420 TVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLKT 479
T+ +++EKA L + + K W+ EI L L DRA++ G R+E E ++K +LL+
Sbjct: 259 TIVEMEEKAKKLHKDQTKHWLGREIELLKRLIDRANEKGWRREL----SEYLDKRELLQN 314
Query: 480 PEERQRRLEEIPEIHSDPNMDPSYESEEDDGETDDKRQDYMXXXXXXXXXXXXEPISPGK 539
P+E+ R L E+PE+ + + S + ++D++++ + G+
Sbjct: 315 PDEQARLLREVPEVIGEELVQNPEVSSPEAHKSDNEQRLSESPLSCIHETPEARNLFGGE 374
Query: 540 GGSFSNDSLSGTRNYSGGIKDLTRNISNKGF----SNKGDDL--VGGGEIVNESLWNQAR 593
F+N + + GI I NKG ++ G + V + N + +
Sbjct: 375 DQQFNNGYVMSNPITTPGITSCATEI-NKGLPTWIASAGAEYLHVDVEQPANGIIGGETP 433
Query: 594 DRETEQFNSWDKPRTALNLETGAR---NNSVVLSESISRAVAEKSPASASTGVTQSAPKI 650
E++ + N++ G++ N S V+ S + V
Sbjct: 434 TEESK-VSQLQSSIPVNNVDNGSQVQPNPSEVIELSDDDEDDNGDGETLDPKVEDVRVLS 492
Query: 651 NESEKI-WHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDAL 707
+ EK+ W Y+DP G VQGPFS+ QL+ W++ YF R+W + E + ++LLTD L
Sbjct: 493 YDKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVLLTDVL 550
Score = 140 (54.3 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 164 VEWASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLF 223
V W S++L++ + + +S++DV + +YI K L DP + V+CD RL LF
Sbjct: 30 VGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLF 89
Query: 224 GKPRVGHFEMLKLLESHFL-TKEDSQVDEL 252
G + ++ LLE H+ ++DS D L
Sbjct: 90 GTRTIFRMKVYDLLEKHYKENQDDSDFDFL 119
Score = 46 (21.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 841 PATGLETGQSPNFSTSSSASKLSVNVDGLNITHGVTSASKP-ETVE 885
PA G+ G++P + S S+L ++ N+ +G P E +E
Sbjct: 423 PANGIIGGETP--TEESKVSQLQSSIPVNNVDNGSQVQPNPSEVIE 466
Score = 37 (18.1 bits), Expect = 5.8e-42, Sum P(2) = 5.8e-42
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 33 MKTVMLIERNEQGNKETAQVDF 54
MK L+E++ + N++ + DF
Sbjct: 97 MKVYDLLEKHYKENQDDSDFDF 118
>TAIR|locus:2154473 [details] [associations]
symbol:AT5G23480 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0016570 "histone modification"
evidence=IEA] InterPro:IPR003121 InterPro:IPR003169
InterPro:IPR004343 Pfam:PF02201 Pfam:PF02213 Pfam:PF03126
PROSITE:PS50829 PROSITE:PS51360 GO:GO:0005634 EMBL:CP002688
GO:GO:0003677 GO:GO:0006352 GO:GO:0016570 SUPFAM:SSF55277
SUPFAM:SSF47592 IPI:IPI00544952 RefSeq:NP_568434.4 UniGene:At.31007
EnsemblPlants:AT5G23480.1 GeneID:832414 KEGG:ath:AT5G23480
OMA:EAHQSDE ArrayExpress:F4KCX4 Uniprot:F4KCX4
Length = 570
Score = 254 (94.5 bits), Expect = 4.5e-18, P = 4.5e-18
Identities = 123/578 (21%), Positives = 238/578 (41%)
Query: 164 VEWASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYK----LRDPQRRTHVICDARL 219
V W S+ L++ + + + +S+ DV +++ YI++ L+ +RR V CD +L
Sbjct: 25 VGWGSRNLIEFLESLGRDTTNKISENDVTAIIMNYIREKSRETPLKSKKRRKTVACDEKL 84
Query: 220 QNLFGKPRVGHFEMLKLLESHFLT--KEDSQVDELQGSVVDTEANLLEADGSSDALVXXX 277
+ LFG ++ ++ L+E H++ +ED D+L S D + L SD +
Sbjct: 85 RLLFGAGKINVIKVPDLVEKHYVENQEEDLFYDDLYASEDDKQQRL----SLSDKVAKQT 140
Query: 278 XXXXXXXXXXXXXXXLQSNVDDYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFA 337
+AAI + L+YLR++ V+EL + ETF KVV TF
Sbjct: 141 KQVVSKPRGT------------FAAIVRDTVKLLYLRKSLVQELAKTPETFESKVVRTFV 188
Query: 338 RIR----------------ISGSAHQKQDL-YRLVQVTGTSKGTEPYKVGKRTTDILLEI 380
RI+ I G+ Q + Y L VT +S + + + ++ I
Sbjct: 189 RIKNPCQLVHVTGVKEGDPIDGNLFQVTNYSYYLKDVTTSSLSDDDFSQ-EECEELHQRI 247
Query: 381 LNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKD-- 438
N + +D+ ++ R+ ++ + V ++ E E +D
Sbjct: 248 NNGFAKRLTVVDMEEKARSLHEDYLEKRELLQNPDEQKRLVDEVPEIVAEELEPECEDDD 307
Query: 439 ---WMEAEILRLSHLRDRASDLGRRKEYPLL--YEECVEKLQLLKTPEERQRRLEEIPEI 493
+E ++ + ++ R+++ P+ ++ E LLK PEE+ R L ++P++
Sbjct: 308 DDRTIEDSLIVPNPEAHQSDKEQRQRDLPVSSSVKKSQENSLLLKNPEEQLRLLCDVPDV 367
Query: 494 HSDPNMDPSYESEEDDGETDDKRQDYMXXXXXXXXXXXXEPISPGKGGSFSNDSLSGTRN 553
++ ++P + +DDG+ + E I P + S+ T
Sbjct: 368 VAE-KLEPEFV--DDDGKLVNDAT-VPNPEAFTEAHQSDEEIQPS---DLPDSSIQKTLE 420
Query: 554 YSGGIKDLTRNISNKGFSNKGDDLVGGGEIVN-ESLWNQARDRETEQFNSWDKPRTALNL 612
T + NK + G +N +S+ + + Q S P L+
Sbjct: 421 DQ---PIWTASAGNKDLHEDVYEPPANGITLNTDSITEGEMNTKVSQHQS-STPVIDLSN 476
Query: 613 ETGARNNSVVLSESISRAVAEKSPASASTGVTQSAPKINESEKIWHYQDPSGKVQGPFSM 672
+T A +N + + E +++ Q+ + + +W Y+ P GK GPFS+
Sbjct: 477 KTQAHSNPIEIIE-----LSDDDDDDEKDKNDQAYQSYDPKKVMWFYEYPKGKTHGPFSL 531
Query: 673 VQLRKWNNTGYFPA--NLRIWRSNEKQDDSILLTDALA 708
L+ W++ YF + ++W++ E ++LLT L+
Sbjct: 532 TDLKTWSDEEYFVGVPDFKVWKTGES---AVLLTKLLS 566
>TAIR|locus:2116189 [details] [associations]
symbol:AT4G34290 "AT4G34290" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002687
EMBL:AL035521 EMBL:AL161585 SUPFAM:SSF47592 InterPro:IPR019835
SMART:SM00151 ProtClustDB:CLSN2685737 EMBL:BT001198 IPI:IPI00535550
PIR:T04775 RefSeq:NP_195155.1 UniGene:At.2612
ProteinModelPortal:Q9SYZ4 SMR:Q9SYZ4 STRING:Q9SYZ4 PRIDE:Q9SYZ4
EnsemblPlants:AT4G34290.1 GeneID:829579 KEGG:ath:AT4G34290
TAIR:At4g34290 InParanoid:Q9SYZ4 OMA:REPRGIM PhylomeDB:Q9SYZ4
Genevestigator:Q9SYZ4 Uniprot:Q9SYZ4
Length = 144
Score = 121 (47.7 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 198 YIKKYKLRDPQRRTHVICDARLQNLF-GKPRVGHFEMLKLLESHFL 242
YIK++ L+DPQ + ++CD +L+ +F GK RVG E+ KL+ HFL
Sbjct: 99 YIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144
>UNIPROTKB|Q5RAD5 [details] [associations]
symbol:RTF1 "RNA polymerase-associated protein RTF1
homolog" species:9601 "Pongo abelii" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001711 "endodermal cell fate commitment"
evidence=ISS] [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISS]
[GO:0019827 "stem cell maintenance" evidence=ISS] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
PROSITE:PS51360 SMART:SM00719 GO:GO:0016055 GO:GO:0045944
GO:GO:0006352 GO:GO:0000122 GO:GO:0016570 GO:GO:0003697
GO:GO:0019827 GO:GO:0032968 GO:GO:0016593 GO:GO:0001711 HSSP:Q96BX6
HOVERGEN:HBG057331 EMBL:CR859083 UniGene:Pab.3521 PRIDE:Q5RAD5
InParanoid:Q5RAD5 Uniprot:Q5RAD5
Length = 665
Score = 146 (56.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 48/189 (25%), Positives = 92/189 (48%)
Query: 308 INLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPY 367
+N + L R+ +E F V G F RI I H + +YR+ ++TG + + Y
Sbjct: 354 LNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVY 410
Query: 368 KVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEK 427
++G T+ L++ + N V ++ +SNQEFTE E + ++++ + T+ +I +K
Sbjct: 411 QLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK 470
Query: 428 AMALQEV---RVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECV-EKLQLLKTPEER 483
++++E + D EI++ +A K+ LL E+ + E L ++
Sbjct: 471 ELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI 530
Query: 484 QRRLEEIPE 492
Q +L E+ E
Sbjct: 531 QDQLNELEE 539
>UNIPROTKB|Q92541 [details] [associations]
symbol:RTF1 "RNA polymerase-associated protein RTF1
homolog" species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0051571 "positive regulation of histone H3-K4
methylation" evidence=IEA] [GO:0080182 "histone H3-K4
trimethylation" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IDA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0019827 "stem cell
maintenance" evidence=IDA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0001711 "endodermal cell fate commitment" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR004343
InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360 SMART:SM00719
GO:GO:0005730 GO:GO:0016055 GO:GO:0045944 GO:GO:0006352
GO:GO:0000122 GO:GO:0003697 GO:GO:0019827 GO:GO:0051571
GO:GO:0032968 GO:GO:0080182 GO:GO:0016593 GO:GO:0001711
EMBL:AC087721 CTD:23168 eggNOG:COG5296 KO:K15178 ChiTaRS:RTF1
EMBL:D87440 EMBL:BC015052 IPI:IPI00303832 RefSeq:NP_055953.3
UniGene:Hs.511096 PDB:2BZE PDB:2DB9 PDB:3U1U PDBsum:2BZE
PDBsum:2DB9 PDBsum:3U1U ProteinModelPortal:Q92541 SMR:Q92541
IntAct:Q92541 STRING:Q92541 PhosphoSite:Q92541 DMDM:118595726
PaxDb:Q92541 PRIDE:Q92541 Ensembl:ENST00000389629 GeneID:23168
KEGG:hsa:23168 UCSC:uc001zny.3 GeneCards:GC15P041709
H-InvDB:HIX0012153 HGNC:HGNC:28996 HPA:HPA006714 MIM:611633
neXtProt:NX_Q92541 PharmGKB:PA134961778 HOGENOM:HOG000231764
HOVERGEN:HBG057331 InParanoid:Q92541 OMA:CKPTMVS OrthoDB:EOG4X97GV
EvolutionaryTrace:Q92541 GenomeRNAi:23168 NextBio:44567
PMAP-CutDB:Q92541 Bgee:Q92541 CleanEx:HS_RTF1 Genevestigator:Q92541
GermOnline:ENSG00000137815 Uniprot:Q92541
Length = 710
Score = 146 (56.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 48/189 (25%), Positives = 92/189 (48%)
Query: 308 INLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPY 367
+N + L R+ +E F V G F RI I H + +YR+ ++TG + + Y
Sbjct: 359 LNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVY 415
Query: 368 KVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEK 427
++G T+ L++ + N V ++ +SNQEFTE E + ++++ + T+ +I +K
Sbjct: 416 QLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK 475
Query: 428 AMALQEV---RVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECV-EKLQLLKTPEER 483
++++E + D EI++ +A K+ LL E+ + E L ++
Sbjct: 476 ELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI 535
Query: 484 QRRLEEIPE 492
Q +L E+ E
Sbjct: 536 QDQLNELEE 544
>UNIPROTKB|E2RPD2 [details] [associations]
symbol:RTF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0080182 "histone H3-K4 trimethylation"
evidence=IEA] [GO:0051571 "positive regulation of histone H3-K4
methylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001711 "endodermal
cell fate commitment" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
PROSITE:PS51360 SMART:SM00719 GO:GO:0005730 GO:GO:0045944
GO:GO:0006352 GO:GO:0000122 GO:GO:0003697 GO:GO:0019827
GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
GO:GO:0001711 CTD:23168 GeneTree:ENSGT00390000012493 KO:K15178
OMA:CKPTMVS EMBL:AAEX03016077 EMBL:AAEX03016074 EMBL:AAEX03016075
EMBL:AAEX03016076 RefSeq:XP_544630.2 Ensembl:ENSCAFT00000015168
GeneID:487506 KEGG:cfa:487506 NextBio:20861089 Uniprot:E2RPD2
Length = 714
Score = 146 (56.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 48/189 (25%), Positives = 92/189 (48%)
Query: 308 INLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPY 367
+N + L R+ +E F V G F RI I H + +YR+ ++TG + + Y
Sbjct: 363 LNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVY 419
Query: 368 KVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEK 427
++G T+ L++ + N V ++ +SNQEFTE E + ++++ + T+ +I +K
Sbjct: 420 QLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK 479
Query: 428 AMALQEV---RVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECV-EKLQLLKTPEER 483
++++E + D EI++ +A K+ LL E+ + E L ++
Sbjct: 480 ELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI 539
Query: 484 QRRLEEIPE 492
Q +L E+ E
Sbjct: 540 QDQLNELEE 548
>MGI|MGI:1309480 [details] [associations]
symbol:Rtf1 "Rtf1, Paf1/RNA polymerase II complex component,
homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0001711 "endodermal cell fate
commitment" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0016570 "histone modification" evidence=IEA]
[GO:0016593 "Cdc73/Paf1 complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO;IMP] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0051571 "positive regulation of histone H3-K4 methylation"
evidence=IMP] [GO:0080182 "histone H3-K4 trimethylation"
evidence=IMP] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
PROSITE:PS51360 SMART:SM00719 MGI:MGI:1309480 GO:GO:0005730
GO:GO:0016055 GO:GO:0045944 GO:GO:0006352 GO:GO:0000122
GO:GO:0003697 GO:GO:0019827 GO:GO:0051571 GO:GO:0032968
GO:GO:0080182 GO:GO:0016593 GO:GO:0001711 EMBL:AL844536 CTD:23168
eggNOG:COG5296 GeneTree:ENSGT00390000012493 KO:K15178 ChiTaRS:RTF1
HOGENOM:HOG000231764 HOVERGEN:HBG057331 OMA:CKPTMVS
OrthoDB:EOG4X97GV EMBL:BC117848 EMBL:BC117849 IPI:IPI00757677
RefSeq:NP_084388.2 UniGene:Mm.33437 ProteinModelPortal:A2AQ19
SMR:A2AQ19 STRING:A2AQ19 PhosphoSite:A2AQ19 PaxDb:A2AQ19
PRIDE:A2AQ19 Ensembl:ENSMUST00000028767 GeneID:76246 KEGG:mmu:76246
UCSC:uc008lue.2 InParanoid:Q08EC5 NextBio:344845 Bgee:A2AQ19
Genevestigator:A2AQ19 Uniprot:A2AQ19
Length = 715
Score = 146 (56.5 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 48/189 (25%), Positives = 92/189 (48%)
Query: 308 INLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPY 367
+N + L R+ +E F V G F RI I H + +YR+ ++TG + + Y
Sbjct: 364 LNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVY 420
Query: 368 KVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEK 427
++G T+ L++ + N V ++ +SNQEFTE E + ++++ + T+ +I +K
Sbjct: 421 QLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK 480
Query: 428 AMALQEV---RVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECV-EKLQLLKTPEER 483
++++E + D EI++ +A K+ LL E+ + E L ++
Sbjct: 481 ELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI 540
Query: 484 QRRLEEIPE 492
Q +L E+ E
Sbjct: 541 QDQLNELEE 549
>TAIR|locus:2060469 [details] [associations]
symbol:AT2G14880 "AT2G14880" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:AC005396
EMBL:CP002685 GenomeReviews:CT485783_GR SUPFAM:SSF47592
eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151 EMBL:AF370580
IPI:IPI00517159 PIR:E84522 RefSeq:NP_565366.1 UniGene:At.13059
ProteinModelPortal:O82326 SMR:O82326 STRING:O82326 PaxDb:O82326
PRIDE:O82326 EnsemblPlants:AT2G14880.1 GeneID:815977
KEGG:ath:AT2G14880 TAIR:At2g14880 HOGENOM:HOG000225318
InParanoid:O82326 OMA:QDIVELP PhylomeDB:O82326
ProtClustDB:CLSN2685737 Genevestigator:O82326 Uniprot:O82326
Length = 141
Score = 119 (46.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 198 YIKKYKLRDPQRRTHVICDARLQNLF-GKPRVGHFEMLKLLESHFL 242
YIK++ L+DPQ + ++CD +L+ +F G+ RVG E+ KL+ HFL
Sbjct: 96 YIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141
>UNIPROTKB|D4A6Z3 [details] [associations]
symbol:Rtf1 "Protein Rtf1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001711 "endodermal
cell fate commitment" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0016593 "Cdc73/Paf1 complex" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0051571
"positive regulation of histone H3-K4 methylation" evidence=IEA]
[GO:0080182 "histone H3-K4 trimethylation" evidence=IEA]
InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
SMART:SM00719 GO:GO:0005634 GO:GO:0003677 GO:GO:0006352
GO:GO:0016570 IPI:IPI00947915 Ensembl:ENSRNOT00000066905
RGD:1310654 ArrayExpress:D4A6Z3 Uniprot:D4A6Z3
Length = 715
Score = 144 (55.7 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 48/189 (25%), Positives = 91/189 (48%)
Query: 308 INLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPY 367
+N + L R+ +E F V G F RI I H + +YR+ ++TG + + Y
Sbjct: 364 LNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVY 420
Query: 368 KVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEK 427
++G T+ L++ + N V ++ +SNQEFTE E + ++++ + T+ +I +K
Sbjct: 421 QLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK 480
Query: 428 AMALQEV---RVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECV-EKLQLLKTPEER 483
+++E + D EI++ +A K+ LL E+ + E L ++
Sbjct: 481 EFSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI 540
Query: 484 QRRLEEIPE 492
Q +L E+ E
Sbjct: 541 QDQLNELEE 549
>POMBASE|SPBC651.09c [details] [associations]
symbol:SPBC651.09c "RNA polymerase II associated Paf1
complex (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=ISO] [GO:0016571 "histone
methylation" evidence=ISO] [GO:0016574 "histone ubiquitination"
evidence=ISO] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISO]
InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126 PROSITE:PS51360
SMART:SM00719 PomBase:SPBC651.09c GO:GO:0006355 GO:GO:0003677
EMBL:CU329671 GO:GO:0006352 GO:GO:0006368 GO:GO:0016574
GO:GO:0016593 GO:GO:0016571 HSSP:Q96BX6 eggNOG:COG5296 KO:K15178
PIR:T40608 RefSeq:NP_595507.1 ProteinModelPortal:O94667
STRING:O94667 EnsemblFungi:SPBC651.09c.1 GeneID:2541123
KEGG:spo:SPBC651.09c OMA:MDDDIIG OrthoDB:EOG4WWVTN NextBio:20802236
Uniprot:O94667
Length = 560
Score = 144 (55.7 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 41/161 (25%), Positives = 77/161 (47%)
Query: 299 DYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVT 358
D A+ +++++N I L R V E + F V G F R++I Q +YRL QV
Sbjct: 211 DNASANLYDLNAIRLGRKHVAEYMYHP-IFESTVTGCFVRVKIG--ERDGQGVYRLCQVK 267
Query: 359 GTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINR 418
G + +PY+V T + LE + V ++++SN+ F++ + +R + ++
Sbjct: 268 GILESRKPYRVDGVLTKVSLECFHGRSKRVFDVNVLSNEPFSDHDFQRWHHQMMEDKLSM 327
Query: 419 LTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGR 459
+ +Q K L+++ E E+ S + +R +L R
Sbjct: 328 PSKNFVQRKLNDLRDMSKYVLSEKEV---SDIINRKKELSR 365
Score = 45 (20.9 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 839 SPPATGLETGQSPNFSTSSSASKLSVNVDGLNITHGVTSAS-KPETVE-SQRVLVSPHQL 896
S P T + TG SP S S S S +S LN + V AS K + + S ++L S Q+
Sbjct: 460 SAP-TSVLTGTSPQPSPSLSTSIMST--PKLNPSESVVVASEKASSPDLSPKLLPSESQI 516
Score = 45 (20.9 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 25/112 (22%), Positives = 47/112 (41%)
Query: 554 YSGGIKDLTRNISNKGFSNKGDDL-VGGGEIVNESLWNQARDRETEQFNSWDKPRTA--- 609
Y G +L + I ++ N ++L +G + N ++ A+ E + + + R A
Sbjct: 385 YVAGNAELVKEIDDQ--LNTLEELSMGSNQNSNSAMDQLAKVNERNRRRNHTEIRLAEQR 442
Query: 610 LN-----LETGARNNSVVLSESISRAVAEKSPASASTGVTQSAPKINESEKI 656
+N L A + S+ + + S ST + S PK+N SE +
Sbjct: 443 MNEERRRLSAAATATPMSAPTSVLTGTSPQPSPSLSTSI-MSTPKLNPSESV 493
>UNIPROTKB|F1N6E9 [details] [associations]
symbol:RTF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0080182 "histone H3-K4 trimethylation" evidence=IEA]
[GO:0051571 "positive regulation of histone H3-K4 methylation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001711 "endodermal
cell fate commitment" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
PROSITE:PS51360 SMART:SM00719 GO:GO:0005730 GO:GO:0045944
GO:GO:0006352 GO:GO:0000122 GO:GO:0003697 GO:GO:0019827
GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
GO:GO:0001711 CTD:23168 GeneTree:ENSGT00390000012493 KO:K15178
OMA:CKPTMVS EMBL:DAAA02028563 IPI:IPI00721589 RefSeq:NP_001179414.1
UniGene:Bt.10050 PRIDE:F1N6E9 Ensembl:ENSBTAT00000002191
GeneID:518260 KEGG:bta:518260 NextBio:20872617 Uniprot:F1N6E9
Length = 714
Score = 141 (54.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 47/189 (24%), Positives = 92/189 (48%)
Query: 308 INLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPY 367
+N + L R+ +E F V G F RI I H + +YR+ ++TG + + Y
Sbjct: 363 LNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVY 419
Query: 368 KVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEK 427
++G T+ L++ + + V ++ +SNQEFTE E + ++++ + T+ +I +K
Sbjct: 420 QLGGTRTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK 479
Query: 428 AMALQEV---RVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECV-EKLQLLKTPEER 483
++++E + D EI++ +A K+ LL E+ + E L ++
Sbjct: 480 ELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI 539
Query: 484 QRRLEEIPE 492
Q +L E+ E
Sbjct: 540 QDQLNELEE 548
>ZFIN|ZDB-GENE-030131-6778 [details] [associations]
symbol:rtf1 "Rtf1, Paf1/RNA polymerase II complex
component, homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0016570 "histone modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0014032 "neural crest cell development"
evidence=IGI;IMP] [GO:0001756 "somitogenesis" evidence=IGI;IMP]
[GO:0036342 "post-anal tail morphogenesis" evidence=IGI]
[GO:0043473 "pigmentation" evidence=IMP] [GO:0007507 "heart
development" evidence=IMP] InterPro:IPR004343 InterPro:IPR018144
Pfam:PF03126 PROSITE:PS51360 SMART:SM00719
ZFIN:ZDB-GENE-030131-6778 GO:GO:0005634 GO:GO:0007507 GO:GO:0003677
GO:GO:0006352 GO:GO:0001756 GO:GO:0016570 GO:GO:0014032
GO:GO:0043473 GO:GO:0036342 GeneTree:ENSGT00390000012493
EMBL:BX284673 IPI:IPI00488636 Ensembl:ENSDART00000015417
ArrayExpress:F1QFQ9 Bgee:F1QFQ9 Uniprot:F1QFQ9
Length = 739
Score = 137 (53.3 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 45/171 (26%), Positives = 85/171 (49%)
Query: 308 INLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPY 367
+N I L R+ +E F V G F RI I S+++ +YR+ ++ + + Y
Sbjct: 383 LNRIRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGNSSNKP--VYRVAEIIDVVETAKIY 439
Query: 368 KVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEK 427
++G T+ L++ + N T V ++ +SNQEFTE E + ++++ + T+ +I +K
Sbjct: 440 QLGSTRTNKGLQLRHGNDTRVFRLEFVSNQEFTESEFMKWKEAMMIAGMQLPTLDEINKK 499
Query: 428 AMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLK 478
+++E + + +I + +DR RK P ++K QLLK
Sbjct: 500 EQSIKEAVNYKFNDKDIEDIVKEKDRF-----RKAPP---NYAMKKTQLLK 542
>POMBASE|SPAC4F10.13c [details] [associations]
symbol:mpd2 "GYF domain protein" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IGI] [GO:0006888 "ER to Golgi vesicle-mediated transport"
evidence=ISO] InterPro:IPR003169 Pfam:PF02213 PROSITE:PS50829
SMART:SM00444 PomBase:SPAC4F10.13c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006888 GO:GO:0006406
SUPFAM:SSF55277 HSSP:Q9FT92 PIR:T38817 RefSeq:NP_594756.1
ProteinModelPortal:O36025 IntAct:O36025 STRING:O36025 PRIDE:O36025
EnsemblFungi:SPAC4F10.13c.1 GeneID:2543445 KEGG:spo:SPAC4F10.13c
eggNOG:NOG330740 OrthoDB:EOG43NBP5 NextBio:20804458 Uniprot:O36025
Length = 992
Score = 137 (53.3 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 86/347 (24%), Positives = 141/347 (40%)
Query: 585 NESLWNQARDRETEQ-FNSW-DKPRTALNLETGARNNSVVLSESISRAVAEKSPASA--- 639
N + N R+T+ N DK + +++ A + V S S A SPA+A
Sbjct: 306 NVPVGNSMSIRDTDSPLNILVDKAKAKASIKENA-SQPVAPSASQREHSAVNSPAAAMSP 364
Query: 640 STGVTQS-------APKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWR 692
ST + S A I + W Y+DP VQGPF+ V + +W GYFP L I R
Sbjct: 365 STAMFSSEAFPQHLASLIPPALLHWLYKDPQNNVQGPFTGVDMHQWYRAGYFPLGLPIKR 424
Query: 693 SNEKQDDSILLTDALAGKFHKDPRLVDISLSQTIPYSGKSHGASSQPGMETPVGG--SSN 750
E++ S+ G +P LV +S P + ++ ++Q G + P+ +
Sbjct: 425 LEEEEYYSLAFFIRQVGN-QLEPFLVPLS-----PVTVQNASWNAQ-GTDLPLSNYLPES 477
Query: 751 FDQNRTAWNQHXXXXXXXXXXXXXXLELPK----------QYRDGWASETNLPSPTPTQS 800
+QNR N+H + K Q + +SE N+ + Q
Sbjct: 478 SEQNRGG-NKHLELYPSTAEVSNVRNDESKANSLSEISYNQQSECRSSELNVNEDSANQK 536
Query: 801 TAGEI----KGKTFEKEWSPTPNNQPGSLMVTNLFPGNVG-----KQSPPATGLETGQSP 851
+ +EKE +P +N+ + + +L G++ KQ P+ ET +S
Sbjct: 537 EESALGTSDNSDMYEKENTPIHHNESLNQLSKDL--GSISLSEETKQEKPSKLKETVESK 594
Query: 852 NFSTSSSASKLSVNVDGLNITHGV-TSASKPETVESQRVLVSPHQLP 897
ST + + + + +T G T+A KP +S + P LP
Sbjct: 595 RLSTGVQKQSPAASKE-IPVTSGSQTTAPKPSPWKS----LPPKHLP 636
>UNIPROTKB|Q5ZKE3 [details] [associations]
symbol:RTF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0001711
"endodermal cell fate commitment" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0051571 "positive regulation of histone H3-K4
methylation" evidence=IEA] [GO:0080182 "histone H3-K4
trimethylation" evidence=IEA] InterPro:IPR004343 InterPro:IPR018144
Pfam:PF03126 PROSITE:PS51360 SMART:SM00719 GO:GO:0005730
GO:GO:0045944 GO:GO:0006352 GO:GO:0000122 GO:GO:0003697
GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
eggNOG:COG5296 GeneTree:ENSGT00390000012493 HOGENOM:HOG000231764
HOVERGEN:HBG057331 OrthoDB:EOG4X97GV EMBL:AADN02033532
EMBL:AC145946 EMBL:AJ720141 IPI:IPI00820846 UniGene:Gga.22583
STRING:Q5ZKE3 Ensembl:ENSGALT00000013997 InParanoid:Q5ZKE3
Uniprot:Q5ZKE3
Length = 585
Score = 140 (54.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 47/189 (24%), Positives = 92/189 (48%)
Query: 308 INLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPY 367
+N + L R+ +E F V G F RI I H + +YR+ ++TG + + Y
Sbjct: 319 LNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVY 375
Query: 368 KVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEK 427
++G T+ L++ + + V ++ +SNQEFTE E + ++++ + T+ +I +K
Sbjct: 376 QLGGTRTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK 435
Query: 428 AMALQEV---RVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECV-EKLQLLKTPEER 483
++++E + D EI++ +A K+ LL E+ + E L ++
Sbjct: 436 EVSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI 495
Query: 484 QRRLEEIPE 492
Q +L E+ E
Sbjct: 496 QDQLNELEE 504
Score = 38 (18.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 246 DSQVDELQGSVVDTEANLLEADGSSDA 272
+S E +G V D+E+N + SD+
Sbjct: 106 ESSAPE-EGEVSDSESNSSSSSSDSDS 131
>UNIPROTKB|F1SSV6 [details] [associations]
symbol:RTF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016570 "histone modification" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
PROSITE:PS51360 SMART:SM00719 GO:GO:0005634 GO:GO:0003677
GO:GO:0006352 GO:GO:0016570 GeneTree:ENSGT00390000012493
EMBL:CU467734 EMBL:AEMK01175632 EMBL:CU633572
Ensembl:ENSSSCT00000005246 Uniprot:F1SSV6
Length = 701
Score = 141 (54.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 47/189 (24%), Positives = 92/189 (48%)
Query: 308 INLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPY 367
+N + L R+ +E F V G F RI I H + +YR+ ++TG + + Y
Sbjct: 350 LNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVY 406
Query: 368 KVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEK 427
++G T+ L++ + + V ++ +SNQEFTE E + ++++ + T+ +I +K
Sbjct: 407 QLGGTRTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK 466
Query: 428 AMALQEV---RVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECV-EKLQLLKTPEER 483
++++E + D EI++ +A K+ LL E+ + E L ++
Sbjct: 467 ELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI 526
Query: 484 QRRLEEIPE 492
Q +L E+ E
Sbjct: 527 QDQLNELEE 535
Score = 39 (18.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 243 TKEDSQVDELQGSVVDTEANLLEADGSSDA 272
T +S E +G V D+++N + SD+
Sbjct: 134 TSAESSAPE-EGEVSDSDSNSSSSSSDSDS 162
>UNIPROTKB|I3LJZ5 [details] [associations]
symbol:RTF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080182 "histone H3-K4 trimethylation" evidence=IEA]
[GO:0051571 "positive regulation of histone H3-K4 methylation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001711 "endodermal
cell fate commitment" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR004343 InterPro:IPR018144 Pfam:PF03126
PROSITE:PS51360 SMART:SM00719 GO:GO:0005730 GO:GO:0045944
GO:GO:0006352 GO:GO:0000122 GO:GO:0003697 GO:GO:0019827
GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
GO:GO:0001711 GeneTree:ENSGT00390000012493 OMA:CKPTMVS
EMBL:CU467734 EMBL:AEMK01175632 EMBL:CU633572
Ensembl:ENSSSCT00000031282 Uniprot:I3LJZ5
Length = 715
Score = 141 (54.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 47/189 (24%), Positives = 92/189 (48%)
Query: 308 INLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPY 367
+N + L R+ +E F V G F RI I H + +YR+ ++TG + + Y
Sbjct: 364 LNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVY 420
Query: 368 KVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEK 427
++G T+ L++ + + V ++ +SNQEFTE E + ++++ + T+ +I +K
Sbjct: 421 QLGGTRTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK 480
Query: 428 AMALQEV---RVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECV-EKLQLLKTPEER 483
++++E + D EI++ +A K+ LL E+ + E L ++
Sbjct: 481 ELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI 540
Query: 484 QRRLEEIPE 492
Q +L E+ E
Sbjct: 541 QDQLNELEE 549
Score = 39 (18.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 243 TKEDSQVDELQGSVVDTEANLLEADGSSDA 272
T +S E +G V D+++N + SD+
Sbjct: 148 TSAESSAPE-EGEVSDSDSNSSSSSSDSDS 176
>UNIPROTKB|F1NY87 [details] [associations]
symbol:RTF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0001711
"endodermal cell fate commitment" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0051571 "positive regulation of histone H3-K4
methylation" evidence=IEA] [GO:0080182 "histone H3-K4
trimethylation" evidence=IEA] InterPro:IPR004343 InterPro:IPR018144
Pfam:PF03126 PROSITE:PS51360 SMART:SM00719 GO:GO:0005730
GO:GO:0045944 GO:GO:0006352 GO:GO:0000122 GO:GO:0003697
GO:GO:0051571 GO:GO:0032968 GO:GO:0080182 GO:GO:0016593
GeneTree:ENSGT00390000012493 OMA:CKPTMVS EMBL:AADN02033532
EMBL:AC145946 IPI:IPI00591962 Ensembl:ENSGALT00000013996
ArrayExpress:F1NY87 Uniprot:F1NY87
Length = 701
Score = 140 (54.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 47/189 (24%), Positives = 92/189 (48%)
Query: 308 INLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPY 367
+N + L R+ +E F V G F RI I H + +YR+ ++TG + + Y
Sbjct: 350 LNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVY 406
Query: 368 KVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEK 427
++G T+ L++ + + V ++ +SNQEFTE E + ++++ + T+ +I +K
Sbjct: 407 QLGGTRTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK 466
Query: 428 AMALQEV---RVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECV-EKLQLLKTPEER 483
++++E + D EI++ +A K+ LL E+ + E L ++
Sbjct: 467 EVSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI 526
Query: 484 QRRLEEIPE 492
Q +L E+ E
Sbjct: 527 QDQLNELEE 535
Score = 38 (18.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 246 DSQVDELQGSVVDTEANLLEADGSSDA 272
+S E +G V D+E+N + SD+
Sbjct: 137 ESSAPE-EGEVSDSESNSSSSSSDSDS 162
>TAIR|locus:2028671 [details] [associations]
symbol:AT1G31760 "AT1G31760" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AC074360 EMBL:AC079041
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
HOGENOM:HOG000225318 ProtClustDB:CLSN2688164 EMBL:AY085089
EMBL:BT024754 IPI:IPI00536805 PIR:B86441 RefSeq:NP_564382.1
UniGene:At.40279 ProteinModelPortal:Q9C504 SMR:Q9C504 IntAct:Q9C504
STRING:Q9C504 PaxDb:Q9C504 PRIDE:Q9C504 EnsemblPlants:AT1G31760.1
GeneID:840063 KEGG:ath:AT1G31760 TAIR:At1g31760 InParanoid:Q9C504
OMA:GITEIMK PhylomeDB:Q9C504 Genevestigator:Q9C504 Uniprot:Q9C504
Length = 112
Score = 103 (41.3 bits), Expect = 0.00026, P = 0.00026
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 197 EYIKKYKLRDPQRRTHVICDARLQNLF-GKPRVGHFEMLKLLESHF 241
EY+K + L++P + + CD +L+ +F GK +VG E++KLL HF
Sbjct: 63 EYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108
>TAIR|locus:505006294 [details] [associations]
symbol:AT2G35605 "AT2G35605" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002685
GenomeReviews:CT485783_GR EMBL:AC006068 EMBL:AC005314
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
HOGENOM:HOG000225318 EMBL:AF370234 EMBL:AY059124 EMBL:AY088833
EMBL:AK118403 IPI:IPI00544861 RefSeq:NP_565810.1 UniGene:At.19064
ProteinModelPortal:Q93W30 SMR:Q93W30 STRING:Q93W30 PaxDb:Q93W30
PRIDE:Q93W30 EnsemblPlants:AT2G35605.1 GeneID:818127
KEGG:ath:AT2G35605 TAIR:At2g35605 InParanoid:Q93W30 OMA:AVKKIWE
PhylomeDB:Q93W30 ProtClustDB:CLSN2688164 ArrayExpress:Q93W30
Genevestigator:Q93W30 Uniprot:Q93W30
Length = 109
Score = 102 (41.0 bits), Expect = 0.00033, P = 0.00033
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 197 EYIKKYKLRDPQRRTHVICDARLQNLF-GKPRVGHFEMLKLLESHF 241
EYIK L++P + ++CD +L+ +F GK VG E+ KLL HF
Sbjct: 60 EYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHF 105
>TAIR|locus:2116302 [details] [associations]
symbol:AT4G26810 "AT4G26810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL035440 EMBL:AL161565
SUPFAM:SSF47592 HOGENOM:HOG000225318 EMBL:BT010795 EMBL:BT011270
IPI:IPI00527090 PIR:T04804 RefSeq:NP_001119064.1 RefSeq:NP_194411.1
UniGene:At.32149 ProteinModelPortal:Q9SZ21 SMR:Q9SZ21 IntAct:Q9SZ21
PRIDE:Q9SZ21 DNASU:828788 EnsemblPlants:AT4G26810.1
EnsemblPlants:AT4G26810.2 GeneID:828788 KEGG:ath:AT4G26810
TAIR:At4g26810 eggNOG:NOG291903 InParanoid:Q9SZ21 OMA:MSHISFF
PhylomeDB:Q9SZ21 ProtClustDB:CLSN2686051 ArrayExpress:Q9SZ21
Genevestigator:Q9SZ21 Uniprot:Q9SZ21
Length = 106
Score = 99 (39.9 bits), Expect = 0.00068, P = 0.00068
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 170 ELLDLVMHMRNG-DKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQN-LFGKPR 227
+L++L +RN +S +S+ + YIK L+DP+ + VICD +L++ L GK R
Sbjct: 22 DLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSILLGKQR 81
Query: 228 VGHFEMLKLLESHFLTKEDSQ 248
V ++ L++ HF KE +
Sbjct: 82 VELVDLPSLIKLHF-PKEQKK 101
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.129 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1232 1091 0.00087 123 3 11 23 0.49 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 636 (68 KB)
Total size of DFA: 545 KB (2246 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 112.97u 0.14s 113.11t Elapsed: 00:00:06
Total cpu time: 112.98u 0.14s 113.12t Elapsed: 00:00:06
Start: Tue May 21 03:01:37 2013 End: Tue May 21 03:01:43 2013