BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047631
(1232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana
GN=NERD PE=1 SV=3
Length = 1773
Score = 1039 bits (2686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/1272 (48%), Positives = 767/1272 (60%), Gaps = 198/1272 (15%)
Query: 1 MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSW 60
+CYTC FSLCKGC KDAV C+RGNKG CETCM+TV LIER +Q KE AQ+DF+DK SW
Sbjct: 658 LCYTCMFSLCKGCAKDAVFFCIRGNKGLCETCMETVKLIERKQQ-EKEPAQLDFNDKTSW 716
Query: 61 EYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDELYDANVDGGHGSDSSS 120
EYLFKDYW+DLK +LSLS +EL +AK P KG +T+A KQ + E D DGG SDSS
Sbjct: 717 EYLFKDYWIDLKTQLSLSPEELDQAKRPLKGHETNASKQGTASET-DYVTDGGSDSDSSP 775
Query: 121 GNAEATVSKRRKAKKRSKSRAKDEVSPGTVKLSGGEGASTDGSVEWASKELLDLVMHMRN 180
K+RK + RSKS + +++ LS G+ +D ++EWASKELLDLV+HMR
Sbjct: 776 --------KKRKTRSRSKSGSAEKI------LSSGDKNLSDETMEWASKELLDLVVHMRR 821
Query: 181 GDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESH 240
GD+S L +VQTLLL YIK+Y LRDP+R++ VICD+RLQNLFGK VGHFEML LL+SH
Sbjct: 822 GDRSFLPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGKSHVGHFEMLNLLDSH 881
Query: 241 FLTKEDSQVDELQGSVVDTEA-NLLEADGSSDALVKGGKDKKRKTRKKGDHRGLQSNVDD 299
FL KE +Q D++QG +VDTE N ++ D + D VK GKDKKRKTRKK +G QSN+DD
Sbjct: 882 FLKKEQNQADDIQGDIVDTEEPNHVDVDENLDHPVKSGKDKKRKTRKKNVRKGRQSNLDD 941
Query: 300 YAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTG 359
+AA+DMHNINLIYLRR+ VE+LLED+ F +KV F R+RISG +QKQDLYRLVQV G
Sbjct: 942 FAAVDMHNINLIYLRRSLVEDLLEDSTAFEEKVASAFVRLRISG--NQKQDLYRLVQVVG 999
Query: 360 TSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRL 419
TSK EPYKVGK+TTD +LEILNL+KTEVISIDIISNQ+FTEDECKRL+QSIKCGLINRL
Sbjct: 1000 TSKAPEPYKVGKKTTDYVLEILNLDKTEVISIDIISNQDFTEDECKRLKQSIKCGLINRL 1059
Query: 420 TVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYE----------- 468
TVGDIQEKA+ALQEVRVK+ +EAEILR SHLRDRASD+GRRKEYP L +
Sbjct: 1060 TVGDIQEKAIALQEVRVKNLLEAEILRFSHLRDRASDMGRRKEYPYLLKLSNSLTMLTLR 1119
Query: 469 ECVEKLQLLKTPEERQRRLEEIPEIHSDPNMDPSYESEEDDGETDDKRQDYMRPRGSGFS 528
ECVEKLQLLK+PEERQRRLEEIPEIH+DP MDP ESE++D + + +++ +RPR S F+
Sbjct: 1120 ECVEKLQLLKSPEERQRRLEEIPEIHADPKMDPDCESEDEDEKEEKEKEKQLRPRSSSFN 1179
Query: 529 RRGREPISPGKGGSFSNDSLSGTRNYS--GGIKDLTRNISNKGFSNKGDDLVGGGEIVNE 586
RRGR+PISP KGG SN+S +GT NYS ++L+R+ S +G + +GD L + V++
Sbjct: 1180 RRGRDPISPRKGGFSSNESWTGTSNYSNTSANRELSRSYSGRGSTGRGDYLGSSDDKVSD 1239
Query: 587 SLWNQARDRETEQFNSWDKPRTALNLETGARNNSVVLSESISRAVAEKSPASASTGVTQS 646
S+W AR+RE + +KPR+ ET AR++ + +S +A + + V+Q
Sbjct: 1240 SMWTSAREREVQPSLGSEKPRSVSIPETPARSSRAIAPPELSPRIASEISMAPPAVVSQP 1299
Query: 647 APKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDA 706
PK N+SEKIWHY+DPSGKVQGPFSM QLRKWNNTGYFPA L IW++NE DS+LLTDA
Sbjct: 1300 VPKSNDSEKIWHYKDPSGKVQGPFSMAQLRKWNNTGYFPAKLEIWKANESPLDSVLLTDA 1359
Query: 707 LAGKFHKDPRLVDISL--SQTIPYSGKSHGASSQPGMETPVGGSSNFDQNRTAWNQHGTP 764
LAG F K + VD S +Q +SG+S + S+P +
Sbjct: 1360 LAGLFQKQTQAVDNSYMKAQVAAFSGQS--SQSEPNL----------------------- 1394
Query: 765 GSSGQSGGTPSLELPKQYRDGWASETNLPSPTPTQSTAGEIKGKTFEKEWSPTPNNQPGS 824
G + + T ++E+P+ +D W+ +LPSPTP Q T K + FE WSPT
Sbjct: 1395 GFAARIAPT-TIEIPRNSQDTWSQGGSLPSPTPNQITTPTAKRRNFESRWSPT------- 1446
Query: 825 LMVTNLFPGNVGKQSPPATGLETGQSPNFSTSSSASKLSVNVDGLNITHGVTSASKPETV 884
K SP + QS N+S + S + +D + + A +P+T
Sbjct: 1447 ------------KPSPQS----ANQSMNYSVAQSGQSQTSRID-IPVVVNSAGALQPQT- 1488
Query: 885 ESQRVLVSPHQLPASSSVVASVNPGVDIKSIGANLQTLVQSVSANVTPVESHGWGSGLAA 944
+ +P + SVN +
Sbjct: 1489 ---------YPIPTPDPINVSVNHSATLH------------------------------- 1508
Query: 945 RPEMMAPSPKPVTGAQGWGSASSQKLEPNNPVSIPAQSPAYAQPYASTFNTGNSPGVFPV 1004
SP P G Q WGS + N P S S +Y P SP V P
Sbjct: 1509 -------SPTPAGGKQSWGSMQTDHGGSNTPSS-QNNSTSYGTP---------SPSVLPS 1551
Query: 1005 SGQSGMPASDSWRAPVPSQSNVQSPAQPITPWGMG-VAGNQSAVPRQVPESQNTGWGQMP 1063
Q G P SDSW+ VPSQ N Q+ AQ WGM V NQ++ Q P +QN+ WGQ
Sbjct: 1552 QSQPGFPPSDSWKVAVPSQPNAQAQAQ----WGMNMVNNNQNSAQPQAPANQNSSWGQGT 1607
Query: 1064 ANPSMGWGGQLPASTNMNWG---APAQGQAPGNAHSGWAGPAQGQAHKNAVPGWAPPGQG 1120
NP+MGW G N+NWG P+ Q G HSGW P QGQ PGW P G
Sbjct: 1608 VNPNMGWVGPAQTGVNVNWGGSSVPSTVQ--GITHSGWVAPVQGQTQAYPNPGWGPTGHP 1665
Query: 1121 PSPV---------NANTGWVAPGQGPPPGNGNPGWGA------PAG-----NPGMWGSDQ 1160
S +GW+ PGQG GN N WG P+G G WG+ Q
Sbjct: 1666 QSQSQSQVQAQAGTTGSGWMQPGQGIQSGNSNQNWGTQNQTAIPSGGSGGNQAGYWGNQQ 1725
Query: 1161 NNGGDRFSNQRDRGSHGGDSGYGGGRPWNRQPSFGSRGGDSSRPHFNKGQRVCK-FHESG 1219
S GDSGYG WNRQ GG + +F KGQRVCK F E+G
Sbjct: 1726 Q-------------SQNGDSGYG----WNRQ-----SGGQQN--NF-KGQRVCKFFRENG 1760
Query: 1220 HCKKGSQCDYLH 1231
HC+KG+ C+YLH
Sbjct: 1761 HCRKGASCNYLH 1772
>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis
thaliana GN=At3g51120 PE=2 SV=3
Length = 1292
Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/527 (50%), Positives = 337/527 (63%), Gaps = 37/527 (7%)
Query: 1 MCYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETAQVDFDDKNSW 60
MCYTCTFS+CK C KDA + VRGN G C TC+K +MLIE QG+ E +VDFDDK SW
Sbjct: 169 MCYTCTFSVCKRCIKDADYVIVRGNMGLCGTCIKPIMLIENIAQGDNEAVKVDFDDKLSW 228
Query: 61 EYLFKDYWLDLKVRLSLSSDELARAKNPWKGSDTHAGKQSSPDELYDANVDGGHGSDSSS 120
EYLFK YWL LK LSL+ DEL RA NPWK A K S ++ H ++ +
Sbjct: 229 EYLFKVYWLCLKEELSLTVDELTRANNPWKEVPNTAPKVESQND---------HTNNRAL 279
Query: 121 GNAEATVSKRRKAKKRSKSRAKDEVSPGTVKLSGGEGASTDGSVEWASKELLDLVMHMRN 180
A +RR + + D +P + G WA+KELL+ V M+N
Sbjct: 280 DVAVNGTKRRRTSDSPTLPNKLDGKNPSNIL------KKAPGDTSWATKELLEFVSFMKN 333
Query: 181 GDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESH 240
GD S LSQFDVQ LLL+YIKK LRDP +++ V+CD L LFGK RVGHFEMLKLLESH
Sbjct: 334 GDTSVLSQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQMLVKLFGKQRVGHFEMLKLLESH 393
Query: 241 FLTKEDSQ-VDELQGSVVDTEANLLEADGSSDALVKGGKDKKRKTRKKGDHRGLQSNVDD 299
L +E + G + +E D D +V+ ++RK R+K D R N+D
Sbjct: 394 VLIQEKPKGAKTTNGETTHAVPSQIEEDSVHDPMVRD---RRRKMRRKTDGRVQNENLDA 450
Query: 300 YAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTG 359
YAAID+HNINLIYLRR F+E LL+D +KVVGT RI++SGS QK D++RLVQV G
Sbjct: 451 YAAIDVHNINLIYLRRKFLESLLDDINKVDEKVVGTILRIKVSGS-DQKLDIHRLVQVVG 509
Query: 360 TSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRL 419
TSK Y++G +TTD++LEILNL+K EVISID +S+Q TEDECKRLRQSIKCGL RL
Sbjct: 510 TSKAIASYQLGAKTTDVMLEILNLDKREVISIDQLSDQNITEDECKRLRQSIKCGLNKRL 569
Query: 420 TVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLKT 479
TV DI + A LQ +R+ + +EAEIL+L+HLRDRA +KL+LLK+
Sbjct: 570 TVVDILKTAATLQAMRINEALEAEILKLNHLRDRA-----------------KKLELLKS 612
Query: 480 PEERQRRLEEIPEIHSDPNMDPSYESEEDDGETDDKRQDYMRPRGSG 526
PEERQR L+E+PE+H+DP+MDPS+ ED G K+ ++++ + G
Sbjct: 613 PEERQRLLQEVPEVHTDPSMDPSHALSEDAGLGTRKQDNHVKAQSKG 659
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 57/69 (82%)
Query: 645 QSAPKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLT 704
Q K +E +IWHY+DP+GK QGPFSMVQLR+W ++G+FP LRIWR++E QD+S+LLT
Sbjct: 707 QETGKDDEESEIWHYRDPTGKTQGPFSMVQLRRWKSSGHFPPYLRIWRAHENQDESVLLT 766
Query: 705 DALAGKFHK 713
DALAG+F K
Sbjct: 767 DALAGRFDK 775
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 1186 RPWNRQPSFG-SRGGDSSRPHFNKGQRVCKFHESGHCKKGSQCDYLH 1231
R W S G G S H KG ++CKF+ESG+CK+G+ C + H
Sbjct: 1245 RQWPYSNSHGYDHGSGSYAAHPPKGLKICKFYESGYCKRGASCSFWH 1291
>sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430 OS=Arabidopsis thaliana
GN=At5g08430 PE=1 SV=2
Length = 553
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 191/373 (51%), Gaps = 54/373 (14%)
Query: 121 GNAEATVSKRRKAKKRSKSRAKDEVSPGTVKLSGGEGASTDGSVEWASKELLDLVMHMRN 180
GN AT S++RKA+ P + G W S++L++ + +
Sbjct: 10 GNGSATSSRKRKAR------------PKRFEFVG-----------WGSRQLIEFLHSLGK 46
Query: 181 GDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESH 240
+S++DV + +YI K L DP + V+CD RL LFG + ++ LLE H
Sbjct: 47 DTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKH 106
Query: 241 FLTKEDSQVDELQGSVVDTEANLLEADGSSDALVKGGKDKKRKTRKKGDHRGLQSNVDDY 300
+ +D D++ + L D + K KR ++ RG +
Sbjct: 107 YKENQD-----------DSDFDFLYED-EPQIICHSEKIAKRTSKVVKKPRG------TF 148
Query: 301 AAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGT 360
AAI NI L+YLR++ V+ELL+ +TF K++G+F RI+ + + ++ Y+LVQVTG
Sbjct: 149 AAIVSDNIKLLYLRKSLVQELLKSPDTFEGKMLGSFVRIKSDPNDYLQKYPYQLVQVTGV 208
Query: 361 SKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLT 420
K T D LL++ N K +SI ++S+ F+++EC+ L Q IK GL+ + T
Sbjct: 209 KK-------EHGTDDFLLQVTNYVKD--VSISVLSDDNFSQEECEDLHQRIKNGLLKKPT 259
Query: 421 VGDIQEKAMALQEVRVKDWMEAEILRLSHLRDRASDLGRRKEYPLLYEECVEKLQLLKTP 480
+ +++EKA L + + K W+ EI L L DRA++ G R+E E ++K +LL+ P
Sbjct: 260 IVEMEEKAKKLHKDQTKHWLGREIELLKRLIDRANEKGWRRELS----EYLDKRELLQNP 315
Query: 481 EERQRRLEEIPEI 493
+E+ R L E+PE+
Sbjct: 316 DEQARLLREVPEV 328
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 657 WHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDAL 707
W Y+DP G VQGPFS+ QL+ W++ YF R+W + E + ++LLTD L
Sbjct: 500 WLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVLLTDVL 550
>sp|A2AQ19|RTF1_MOUSE RNA polymerase-associated protein RTF1 homolog OS=Mus musculus
GN=Rtf1 PE=2 SV=1
Length = 715
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 328 FHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTE 387
F V G F RI I H + +YR+ ++TG + + Y++G T+ L++ + N
Sbjct: 383 FAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQR 440
Query: 388 VISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQE 433
V ++ +SNQEFTE E + ++++ + T+ +I +K ++++E
Sbjct: 441 VFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKE 486
>sp|Q92541|RTF1_HUMAN RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens
GN=RTF1 PE=1 SV=4
Length = 710
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 328 FHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTE 387
F V G F RI I H + +YR+ ++TG + + Y++G T+ L++ + N
Sbjct: 378 FAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQR 435
Query: 388 VISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQE 433
V ++ +SNQEFTE E + ++++ + T+ +I +K ++++E
Sbjct: 436 VFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKE 481
>sp|Q5RAD5|RTF1_PONAB RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo
abelii GN=RTF1 PE=2 SV=2
Length = 665
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 328 FHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILNLNKTE 387
F V G F RI I H + +YR+ ++TG + + Y++G T+ L++ + N
Sbjct: 373 FAKTVTGCFVRIGIGN--HNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQR 430
Query: 388 VISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQE 433
V ++ +SNQEFTE E + ++++ + T+ +I +K ++++E
Sbjct: 431 VFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKE 476
>sp|O94667|RTF1_SCHPO RNA polymerase-associated protein C651.09c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC651.09c PE=1 SV=1
Length = 560
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 299 DYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVT 358
D A+ +++++N I L R V E + F V G F R++I Q +YRL QV
Sbjct: 211 DNASANLYDLNAIRLGRKHVAEYMYHP-IFESTVTGCFVRVKIG--ERDGQGVYRLCQVK 267
Query: 359 GTSKGTEPYKVGKRTTDILLEILNLNKTEVISIDIISNQEFTEDECKR 406
G + +PY+V T + LE + V ++++SN+ F++ + +R
Sbjct: 268 GILESRKPYRVDGVLTKVSLECFHGRSKRVFDVNVLSNEPFSDHDFQR 315
>sp|Q0DVU4|C3H20_ORYSJ Zinc finger CCCH domain-containing protein 20 OS=Oryza sativa subsp.
japonica GN=Os03g0112700 PE=2 SV=1
Length = 707
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 1146 WGAPAGNPGMWGSDQNNGGDRFSNQRDRGSHGGDS-GYGGGRPWNRQPSFGSRGGDSSRP 1204
W AGN N G + ++ RDR S +S +R FG+ G S P
Sbjct: 628 WNPYAGN--------ANRGSQRNHHRDRYSQISESWLLSSNYSRSRSDGFGTGGSSRSTP 679
Query: 1205 HFNKGQRVCKFHESGHCKKGSQCDYLH 1231
+ +CKFHE+G+C+KG+ C+YLH
Sbjct: 680 RGQTQRGICKFHENGYCRKGASCNYLH 706
>sp|Q7KQM6|PERQ1_DROME PERQ amino acid-rich with GYF domain-containing protein CG11148
OS=Drosophila melanogaster GN=CG11148 PE=1 SV=2
Length = 1574
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 648 PKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWR 692
P +NE +W Y+DP VQGPFS V++ +W GYF NL + R
Sbjct: 563 PNLNE---LWFYRDPQANVQGPFSAVEMTEWYRAGYFNENLFVRR 604
>sp|Q6Y7W6|PERQ2_HUMAN PERQ amino acid-rich with GYF domain-containing protein 2 OS=Homo
sapiens GN=GIGYF2 PE=1 SV=1
Length = 1299
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 646 SAPKINESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRS 693
S P ++E+ + W+Y+DP G++QGPF+ ++ +W GYF +L + R+
Sbjct: 525 SIPLMHEAMQKWYYKDPQGEIQGPFNNQEMAEWFQAGYFTMSLLVKRA 572
>sp|O36025|MPD2_SCHPO GYF domain-containing protein mpd2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mpd2 PE=1 SV=1
Length = 992
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 657 WHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHKDPR 716
W Y+DP VQGPF+ V + +W GYFP L I R E++ S+ G +P
Sbjct: 389 WLYKDPQNNVQGPFTGVDMHQWYRAGYFPLGLPIKRLEEEEYYSLAFFIRQVGN-QLEPF 447
Query: 717 LVDIS 721
LV +S
Sbjct: 448 LVPLS 452
>sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo PE=1 SV=1
Length = 5085
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 105/267 (39%), Gaps = 42/267 (15%)
Query: 896 LPASSSVVASVNPGVDIKSIGANLQTLVQSVSANVTPVESHGWGSGLAARPEMMAPSPKP 955
L A SSVV NP I A+ + ++ + G G+A +P + PSPKP
Sbjct: 159 LSAVSSVVNKFNPFDLISDSEASQE---ETTKKQKVVQKEQGKSEGMA-KPPLQQPSPKP 214
Query: 956 VTGAQGWGSASSQKLEPNNPVSIPAQSPAYAQPYASTFNTGNSPGVFPVSGQSGMPASDS 1015
+ QG Q + ++P S+ +Q +P A PG +G P+ S
Sbjct: 215 IPKQQGQVKEVIQ--QDSSPKSVSSQQAEKVKPQA--------PG-------TGKPSQQS 257
Query: 1016 WRAPVPSQSNVQ--SPAQPITPW-GMGVAGNQSAVPRQVPESQNTGWGQMPANPSMGWGG 1072
P+Q+ Q SP +P+ G A Q P + P +Q G G+ PA P G
Sbjct: 258 -----PAQTPAQQASPGKPVAQQPGSAKATVQQPGPAKSP-AQPAGTGKSPAQPPAKTPG 311
Query: 1073 QLP----ASTNMNWGAPAQGQAPGNAHSGWAGPAQGQAHKNAVPGWAP-PGQGPSPVNAN 1127
Q S++ G + Q PG+ GP + A + PG A P Q P P
Sbjct: 312 QQAGLEKTSSSQQPGPKSLAQTPGHGKFPL-GPVKSPAQQ---PGTAKHPAQQPGP---Q 364
Query: 1128 TGWVAPGQGPPPGNGNPGWGAPAGNPG 1154
T PG P + PA PG
Sbjct: 365 TAAKVPGPTKTPAQQSGPGKTPAQQPG 391
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.129 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,791,667
Number of Sequences: 539616
Number of extensions: 25107084
Number of successful extensions: 84261
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 1476
Number of HSP's that attempted gapping in prelim test: 67238
Number of HSP's gapped (non-prelim): 9603
length of query: 1232
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1103
effective length of database: 121,958,995
effective search space: 134520771485
effective search space used: 134520771485
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)