Query 047631
Match_columns 1232
No_of_seqs 362 out of 716
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 23:18:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bze_A KIAA0252 protein; human 100.0 1.2E-34 4E-39 291.8 10.7 135 299-436 19-153 (153)
2 3u1u_A RNA polymerase-associat 100.0 1.2E-34 4.2E-39 286.6 9.7 129 303-434 9-137 (137)
3 1v32_A AT5G08430, hypothetical 99.9 4.6E-28 1.6E-32 229.5 9.5 92 155-246 4-95 (101)
4 1v31_A Hypothetical protein RA 99.9 7.6E-23 2.6E-27 191.1 5.0 76 166-247 13-88 (93)
5 1uhr_A SWI/SNF related, matrix 99.9 8.2E-23 2.8E-27 190.9 3.6 76 166-247 13-88 (93)
6 1wh2_A Hypothetical protein AT 99.7 3E-18 1E-22 155.9 6.2 63 651-713 14-76 (78)
7 3k3v_A Protein SMY2; GYF domai 99.4 2.2E-13 7.7E-18 129.1 3.9 58 653-710 14-77 (100)
8 1syx_B CD2BP2, CD2 antigen cyt 98.4 6.9E-08 2.4E-12 89.6 3.2 42 654-695 25-69 (86)
9 3dac_M MDM4 protein; MDMX, MDM 96.2 0.0046 1.6E-07 61.1 5.5 77 168-245 28-108 (130)
10 3fea_A MDM4 protein; HDMX, HDM 95.7 0.0081 2.8E-07 57.2 4.5 75 168-243 19-97 (100)
11 2z5s_M MDM4 protein, zebrafish 95.3 0.02 6.9E-07 56.9 5.7 76 168-244 27-106 (140)
12 1ycq_A MDM2, MDM2; anti-oncoge 94.7 0.032 1.1E-06 53.8 5.2 75 168-243 15-90 (107)
13 2d9n_A Cleavage and polyadenyl 94.7 0.0085 2.9E-07 54.1 1.2 23 1210-1232 10-32 (77)
14 1z1m_A Ubiquitin-protein ligas 94.4 0.037 1.3E-06 54.2 4.9 76 169-245 32-108 (119)
15 2rhk_C Cleavage and polyadenyl 93.9 0.0086 2.9E-07 53.7 -0.5 23 1210-1232 16-38 (72)
16 2cqe_A KIAA1064 protein; CCCH 93.4 0.029 1E-06 53.0 2.2 25 1208-1232 11-35 (98)
17 2axi_A Ubiquitin-protein ligas 93.1 0.059 2E-06 52.4 3.8 76 167-243 14-90 (115)
18 1m9o_A Tristetraproline; Cys3H 91.8 0.063 2.1E-06 47.6 2.0 23 1210-1232 12-35 (77)
19 3d2q_A Muscleblind-like protei 90.4 0.052 1.8E-06 48.2 0.1 22 1211-1232 7-29 (70)
20 2e5s_A Otthump00000018578; ZF- 89.7 0.068 2.3E-06 50.6 0.3 21 1212-1232 22-43 (98)
21 3u1l_A PRE-mRNA-splicing facto 86.3 0.1 3.4E-06 56.4 -1.0 21 1212-1232 72-92 (240)
22 3d2q_A Muscleblind-like protei 84.4 0.19 6.5E-06 44.6 -0.0 20 1212-1232 44-63 (70)
23 2cqe_A KIAA1064 protein; CCCH 84.2 0.22 7.6E-06 47.0 0.3 22 1211-1232 37-59 (98)
24 1m9o_A Tristetraproline; Cys3H 83.2 0.23 7.9E-06 43.9 0.0 22 1211-1232 51-73 (77)
25 3d2n_A Muscleblind-like protei 78.8 0.51 1.8E-05 43.5 0.7 21 1212-1232 11-32 (83)
26 2d9n_A Cleavage and polyadenyl 78.5 0.37 1.3E-05 43.4 -0.4 20 1212-1232 40-60 (77)
27 2e5s_A Otthump00000018578; ZF- 78.5 0.37 1.3E-05 45.6 -0.3 20 1212-1232 58-77 (98)
28 2fc6_A Nuclear, target of EGR1 76.1 0.4 1.4E-05 40.8 -0.8 22 1211-1232 21-43 (50)
29 2rpp_A Muscleblind-like protei 73.9 0.61 2.1E-05 43.7 -0.2 21 1212-1232 19-40 (89)
30 3d2n_A Muscleblind-like protei 70.3 0.87 3E-05 42.0 -0.1 21 1211-1232 44-64 (83)
31 2rhk_C Cleavage and polyadenyl 68.8 0.82 2.8E-05 40.9 -0.6 21 1211-1232 45-66 (72)
32 2d9m_A Zinc finger CCCH-type d 58.7 4.1 0.00014 36.8 2.0 22 1211-1232 21-42 (69)
33 2rpp_A Muscleblind-like protei 55.3 2.2 7.6E-05 39.9 -0.3 21 1211-1232 52-72 (89)
34 1x4t_A Hypothetical protein LO 47.4 16 0.00054 34.7 4.0 36 400-444 22-57 (92)
35 4gne_A Histone-lysine N-methyl 43.6 5 0.00017 38.7 0.1 22 1-22 71-92 (107)
36 1wig_A KIAA1808 protein; LIM d 39.9 7.1 0.00024 34.0 0.4 37 2-40 31-67 (73)
37 2eqe_A Tumor necrosis factor, 31.4 11 0.00037 31.8 0.2 22 12-33 17-39 (48)
38 3bpj_A Eukaryotic translation 26.3 73 0.0025 29.2 4.7 63 397-459 9-72 (80)
39 2w6a_A ARF GTPase-activating p 24.7 1.5E+02 0.0051 26.3 6.0 47 393-451 4-50 (63)
40 1f80_D Acyl carrier protein; t 22.9 51 0.0017 28.3 2.9 57 185-244 2-58 (81)
41 2kwl_A ACP, acyl carrier prote 21.0 69 0.0024 27.8 3.4 58 184-244 3-60 (84)
No 1
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=100.00 E-value=1.2e-34 Score=291.78 Aligned_cols=135 Identities=24% Similarity=0.393 Sum_probs=127.7
Q ss_pred hhhhhcHHHHhhhhhcHHHHHHHhcCcchHHHhhhcceEEEEecCCCCCCCCceEEEEEcCcCcCCcccccCCceecEEE
Q 047631 299 DYAAIDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILL 378 (1232)
Q Consensus 299 d~AAidvedIn~IrLkRsfLe~l~~DPP~Fek~VvGcFVRI~IG~~~~qgq~vYRL~QIvGV~k~~K~YkLG~~~Tnk~L 378 (1232)
+....++++|++|||+|++|++||+ .|+|+++|+||||||+||++ +++++||||||+||.++.|+|+|+++.||++|
T Consensus 19 ~~~v~~l~di~~irL~Rs~l~~~~~-~P~Fe~~V~GcFVRV~ig~~--~~~~~YRl~qI~gv~~~~k~Y~l~~~~T~~~L 95 (153)
T 2bze_A 19 SHMVSLPEELNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGNH--NSKPVYRVAEITGVVETAKVYQLGGTRTNKGL 95 (153)
T ss_dssp CSBCCCHHHHHHSEECHHHHHHHSS-SSSCHHHHTTCEEEEESSTT--SSSCCEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CCCcCCHHHhhheEEEHHHHHHHhc-CCchhHheEEEEEEEEeCCC--CCCccEEEEEEEeEEecCcccccCCcccceEE
Confidence 4445678899999999999999999 68999999999999999986 58899999999999888999999999999999
Q ss_pred EEEeCCceeeEEeEeccCCcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHh
Q 047631 379 EILNLNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRV 436 (1232)
Q Consensus 379 ~L~~G~keR~f~Id~VSNsdFTEeEfeRw~q~~k~~~~k~PTv~dVeeKa~dIq~ai~ 436 (1232)
+|++|+.+|.|+|++|||++|||+||++|++.|+++++++||+++|++|+++|++|++
T Consensus 96 ~l~~g~~~r~~~m~~vSN~~fte~Ef~~w~~~~~~~~~~~PT~~~v~~K~~~i~~a~n 153 (153)
T 2bze_A 96 QLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALN 153 (153)
T ss_dssp EEESSSCEEEECGGGBCCSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHHHHHC-
T ss_pred EEEECCcceEEEeeEeeCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999974
No 2
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A
Probab=100.00 E-value=1.2e-34 Score=286.61 Aligned_cols=129 Identities=26% Similarity=0.426 Sum_probs=121.0
Q ss_pred hcHHHHhhhhhcHHHHHHHhcCcchHHHhhhcceEEEEecCCCCCCCCceEEEEEcCcCcCCcccccCCceecEEEEEEe
Q 047631 303 IDMHNINLIYLRRNFVEELLEDTETFHDKVVGTFARIRISGSAHQKQDLYRLVQVTGTSKGTEPYKVGKRTTDILLEILN 382 (1232)
Q Consensus 303 idvedIn~IrLkRsfLe~l~~DPP~Fek~VvGcFVRI~IG~~~~qgq~vYRL~QIvGV~k~~K~YkLG~~~Tnk~L~L~~ 382 (1232)
.++++|++|||+|++|++||+ .|+|+++|+||||||+||++. ++++||||||+||.++.++|+|+++.||++|.|+|
T Consensus 9 ~~l~dl~~i~L~R~~l~~~~~-~P~Fe~~V~GcFVRv~ig~~~--~~~~Yrl~qI~gv~~~~k~Y~l~~~~T~~~L~l~~ 85 (137)
T 3u1u_A 9 SLPEELNRVRLSRHKLERWCH-MPFFAKTVTGCFVRIGIGNHN--SKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRH 85 (137)
T ss_dssp CSHHHHHTTBCCHHHHHHHTT-STTHHHHHTTCEEEEEEEC------CEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCHHHhcceEEEHHHHHHHhc-CCChhHheEEEEEEEEeCCCC--CCccEEEEEEEEEEecCcccccCCceeeEEEEEEe
Confidence 468899999999999999999 679999999999999999985 88999999999998889999999999999999999
Q ss_pred CCceeeEEeEeccCCcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 047631 383 LNKTEVISIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEV 434 (1232)
Q Consensus 383 G~keR~f~Id~VSNsdFTEeEfeRw~q~~k~~~~k~PTv~dVeeKa~dIq~a 434 (1232)
|+.+|.|+|++|||++|||+||++|++.|+++++++||+.+|++|+++|++|
T Consensus 86 g~~~r~~~~~~vSN~~fte~E~~~w~~~~~~~~~~~Pt~~~l~~K~~~i~~a 137 (137)
T 3u1u_A 86 GNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEA 137 (137)
T ss_dssp TTEEEEEEGGGBCSSCCCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHTCCC
T ss_pred CCcceEEEeeeecCCCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999864
No 3
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.95 E-value=4.6e-28 Score=229.50 Aligned_cols=92 Identities=29% Similarity=0.589 Sum_probs=87.9
Q ss_pred CCCcCCCCCcccccHHHHHHHhhhcCCCCcccCHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhCCCccChhhHH
Q 047631 155 GEGASTDGSVEWASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEML 234 (1232)
Q Consensus 155 ~~~~~~~~f~~wlSpeLaefLG~Ig~dd~~~lSR~dVvk~LWeYIK~nnLQDP~nKr~IiCDekLr~LFGk~rV~~feI~ 234 (1232)
++..++.+|++|+|++|++||++||.++++++||++|+++||+|||+||||||++||.|+||++|++|||+++|.||+|+
T Consensus 4 ~~~~~~~~~~~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~ 83 (101)
T 1v32_A 4 GSSGKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVY 83 (101)
T ss_dssp CCCSSCCSSSSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHH
T ss_pred CCCCCcceecccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHH
Confidence 55677889999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCCC
Q 047631 235 KLLESHFLTKED 246 (1232)
Q Consensus 235 kLL~~Hl~~~dp 246 (1232)
++|.+||.++++
T Consensus 84 klL~~Hl~~~~e 95 (101)
T 1v32_A 84 DLLEKHYKENQD 95 (101)
T ss_dssp HHHHHHSCSCCC
T ss_pred HHHHHHcCcccc
Confidence 999999999864
No 4
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.86 E-value=7.6e-23 Score=191.08 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=73.2
Q ss_pred cccHHHHHHHhhhcCCCCcccCHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhCCCccChhhHHHHHHccCCCCC
Q 047631 166 WASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESHFLTKE 245 (1232)
Q Consensus 166 wlSpeLaefLG~Ig~dd~~~lSR~dVvk~LWeYIK~nnLQDP~nKr~IiCDekLr~LFGk~rV~~feI~kLL~~Hl~~~d 245 (1232)
-+|++|++||| ..++||++|+++||+|||+||||||++|+.|+||++|++|||+++|.||+|+++|++||.+++
T Consensus 13 ~lS~~La~~lG------~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1v31_A 13 KLSTALMDVLG------IEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPP 86 (93)
T ss_dssp ECCHHHHHHSC------CSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBCCC
T ss_pred ccCHHHHHHHC------CCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCCCC
Confidence 39999999997 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 047631 246 DS 247 (1232)
Q Consensus 246 p~ 247 (1232)
|.
T Consensus 87 Pi 88 (93)
T 1v31_A 87 PS 88 (93)
T ss_dssp CS
T ss_pred Ce
Confidence 84
No 5
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.86 E-value=8.2e-23 Score=190.94 Aligned_cols=76 Identities=29% Similarity=0.410 Sum_probs=73.2
Q ss_pred cccHHHHHHHhhhcCCCCcccCHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhCCCccChhhHHHHHHccCCCCC
Q 047631 166 WASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESHFLTKE 245 (1232)
Q Consensus 166 wlSpeLaefLG~Ig~dd~~~lSR~dVvk~LWeYIK~nnLQDP~nKr~IiCDekLr~LFGk~rV~~feI~kLL~~Hl~~~d 245 (1232)
-+|++|++||| ..++||++|+++||+|||+||||||++|+.|+||++|++|||+++|.||+|+++|++||.+++
T Consensus 13 ~lS~~La~~lG------~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1uhr_A 13 KLDPRLARLLG------IHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPE 86 (93)
T ss_dssp EECTTHHHHTC------CSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSS
T ss_pred CcCHHHHHHHC------CCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCC
Confidence 39999999997 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 047631 246 DS 247 (1232)
Q Consensus 246 p~ 247 (1232)
|.
T Consensus 87 PI 88 (93)
T 1uhr_A 87 PS 88 (93)
T ss_dssp CC
T ss_pred Ce
Confidence 84
No 6
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=99.72 E-value=3e-18 Score=155.92 Aligned_cols=63 Identities=38% Similarity=0.818 Sum_probs=59.6
Q ss_pred CCCCCceeecCCCCCccCCCcHHHHhhhhcCCCCCCCceeeecCccccchhhhHHHHhcccCC
Q 047631 651 NESEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEKQDDSILLTDALAGKFHK 713 (1232)
Q Consensus 651 ~e~~~~W~y~dP~G~vqGPFs~~~L~~W~~~gyF~~~l~Vwrt~e~~d~silL~daL~~~f~~ 713 (1232)
+..+.+|||+||+|++||||++.+|++|+++|||+++|+|||+++++++.|+|+|+|++..+.
T Consensus 14 ~~~~~~W~Y~Dp~g~iQGPFs~~~M~~W~~~GyF~~~L~Vrr~~~~~~~~i~L~dll~~~g~~ 76 (78)
T 1wh2_A 14 DKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVLLTDVLRLSGPS 76 (78)
T ss_dssp CSSSCCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCEEEETTSCTTSCEEHHHHHHHSSCS
T ss_pred CcccCeEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEeCCCCcceehHHHHHHHHCCC
Confidence 456789999999999999999999999999999999999999999999999999999988765
No 7
>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A
Probab=99.36 E-value=2.2e-13 Score=129.08 Aligned_cols=58 Identities=29% Similarity=0.606 Sum_probs=51.2
Q ss_pred CCCceeecCCCCCccCCCcHHHHhhhhcCCCCCCCceeeecCcc-----cc-chhhhHHHHhcc
Q 047631 653 SEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNEK-----QD-DSILLTDALAGK 710 (1232)
Q Consensus 653 ~~~~W~y~dP~G~vqGPFs~~~L~~W~~~gyF~~~l~Vwrt~e~-----~d-~silL~daL~~~ 710 (1232)
.+.+|+|+||+|+|||||+..+|++|..+|||+++|+|||++++ ++ .=|.|.|++...
T Consensus 14 ~e~~W~Y~Dp~G~vQGPFs~~~M~~W~~~GYF~~~L~VrR~~~~~~p~g~d~~F~~Lgel~~~~ 77 (100)
T 3k3v_A 14 VESSWRYIDTQGQIHGPFTTQMMSQWYIGGYFASTLQISRLGSTPETLGINDIFITLGELMTKL 77 (100)
T ss_dssp -CCEEEEECTTSCEEEEEEHHHHHHHHHTTCCCTTCEEEECCSSCCSSSCBTCCEEHHHHHHHH
T ss_pred ccceEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEcCCCCCccCCCCceeeHHHHHHHh
Confidence 46899999999999999999999999999999999999999886 33 455999988754
No 8
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A
Probab=98.44 E-value=6.9e-08 Score=89.64 Aligned_cols=42 Identities=26% Similarity=0.778 Sum_probs=40.4
Q ss_pred CCceeec---CCCCCccCCCcHHHHhhhhcCCCCCCCceeeecCc
Q 047631 654 EKIWHYQ---DPSGKVQGPFSMVQLRKWNNTGYFPANLRIWRSNE 695 (1232)
Q Consensus 654 ~~~W~y~---dP~G~vqGPFs~~~L~~W~~~gyF~~~l~Vwrt~e 695 (1232)
+.+|+|+ ||+|+|||||+..+|+.|.+.|||...+.|+|++.
T Consensus 25 ~~~WeYKW~~~~~~~i~GPfs~~eM~~W~~~GYF~~~v~vRrvg~ 69 (86)
T 1syx_B 25 DVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDP 69 (86)
T ss_dssp CCEEEEESSSSSSSCCEEEEEHHHHHHHHHTTSCTTCCEEEESSS
T ss_pred cceEEEEecCCCCCcccCCcCHHHHHHHHHCCCcCCCeEEEEecC
Confidence 5899999 99999999999999999999999999999999983
No 9
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.24 E-value=0.0046 Score=61.08 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=68.1
Q ss_pred cHHHHHHHhhhcCCCCcccCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhCCCccChhh---HHHHHHccCCC
Q 047631 168 SKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICD-ARLQNLFGKPRVGHFE---MLKLLESHFLT 243 (1232)
Q Consensus 168 SpeLaefLG~Ig~dd~~~lSR~dVvk~LWeYIK~nnLQDP~nKr~IiCD-ekLr~LFGk~rV~~fe---I~kLL~~Hl~~ 243 (1232)
-++|..||...|.. ....|+.+|+..|-+||-.+.|.||.+...|.|. +.|..+||++++.+.+ +.++|.++|..
T Consensus 28 k~~lL~iLq~aGA~-~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NLv~ 106 (130)
T 3dac_M 28 RAPLLQILKVAGAQ-EEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNLVI 106 (130)
T ss_dssp CHHHHHHHHHTTCC-CSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHEEE
T ss_pred cHHHHHHHHHhccC-cceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhheec
Confidence 46788899877665 4789999999999999999999999999999994 6789999999999998 99999999987
Q ss_pred CC
Q 047631 244 KE 245 (1232)
Q Consensus 244 ~d 245 (1232)
.-
T Consensus 107 ~~ 108 (130)
T 3dac_M 107 LN 108 (130)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 10
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=95.71 E-value=0.0081 Score=57.25 Aligned_cols=75 Identities=21% Similarity=0.312 Sum_probs=65.8
Q ss_pred cHHHHHHHhhhcCCCCcccCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhCCCccChh---hHHHHHHccCCC
Q 047631 168 SKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICD-ARLQNLFGKPRVGHF---EMLKLLESHFLT 243 (1232)
Q Consensus 168 SpeLaefLG~Ig~dd~~~lSR~dVvk~LWeYIK~nnLQDP~nKr~IiCD-ekLr~LFGk~rV~~f---eI~kLL~~Hl~~ 243 (1232)
-++|..||...+.. ....|..+|+..|=+||-.+.|.||.+...|.|. +.|-.+||++++.+- .+.++|.+||..
T Consensus 19 k~~lL~iLq~aGA~-~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nLv~ 97 (100)
T 3fea_A 19 KLPLLKILHAAGAQ-GEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVT 97 (100)
T ss_dssp CHHHHHHHHHTTCC-SSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHEEC
T ss_pred cHHHHHHHHHhccC-cceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhcee
Confidence 46788999877665 4789999999999999999999999999999994 678899999999887 789999998864
No 11
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=95.27 E-value=0.02 Score=56.92 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=61.9
Q ss_pred cHHHHHHHhhhcCCCCcccCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhCCCccChhhHH---HHHHccCCC
Q 047631 168 SKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICD-ARLQNLFGKPRVGHFEML---KLLESHFLT 243 (1232)
Q Consensus 168 SpeLaefLG~Ig~dd~~~lSR~dVvk~LWeYIK~nnLQDP~nKr~IiCD-ekLr~LFGk~rV~~feI~---kLL~~Hl~~ 243 (1232)
-++|..||...|-- ....|+-+|+-.|-+||-.+.|.|+.+...|.|. +.|-+|||++.+.+-+.. ++|.+-|..
T Consensus 27 k~~LLkiLq~aGA~-~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~NLv~ 105 (140)
T 2z5s_M 27 RAPLLQILKVAGAQ-EEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRNLVI 105 (140)
T ss_dssp CHHHHHHHHHTTCC-CSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHHEEC
T ss_pred cHHHHHHHHHhCcc-cceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhccc
Confidence 35888888765554 4789999999999999999999999999999995 566999999999888655 555555544
Q ss_pred C
Q 047631 244 K 244 (1232)
Q Consensus 244 ~ 244 (1232)
.
T Consensus 106 ~ 106 (140)
T 2z5s_M 106 L 106 (140)
T ss_dssp C
T ss_pred c
Confidence 3
No 12
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=94.72 E-value=0.032 Score=53.80 Aligned_cols=75 Identities=24% Similarity=0.247 Sum_probs=63.0
Q ss_pred cHHHHHHHhhhcCCCCcccCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhCCCccChhhHHHHHHccCCC
Q 047631 168 SKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICD-ARLQNLFGKPRVGHFEMLKLLESHFLT 243 (1232)
Q Consensus 168 SpeLaefLG~Ig~dd~~~lSR~dVvk~LWeYIK~nnLQDP~nKr~IiCD-ekLr~LFGk~rV~~feI~kLL~~Hl~~ 243 (1232)
.++|..||..++.- ....|+-+|+-.|-+||-.+.|.|+.+...|.|. +.|-+|||++.+.+-+...+...|...
T Consensus 15 k~~LLklL~~~GA~-~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (107)
T 1ycq_A 15 TPLLLSLLKSAGAQ-KETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISRN 90 (107)
T ss_dssp CHHHHHHHHHTTCC-CSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHTT
T ss_pred cHHHHHHHHHhccc-cceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 46788888877765 4789999999999999999999999999999995 566999999999998777555555443
No 13
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.68 E-value=0.0085 Score=54.06 Aligned_cols=23 Identities=52% Similarity=1.068 Sum_probs=20.7
Q ss_pred ceEEEeeccccccCCCCCCCCCC
Q 047631 1210 QRVCKFHESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1210 q~vc~~~~~g~C~~g~~c~y~h~ 1232 (1232)
+.||+||..|.|++|++|.|.|.
T Consensus 10 ~~~C~~fl~G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 10 TVVCKHWLRGLCKKGDQCEFLHE 32 (77)
T ss_dssp TSBCHHHHTTCCSCTTSSSSBCS
T ss_pred ceeCHhHccCcCCCCCCCCCccc
Confidence 35999998899999999999994
No 14
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=94.39 E-value=0.037 Score=54.16 Aligned_cols=76 Identities=25% Similarity=0.312 Sum_probs=63.5
Q ss_pred HHHHHHHhhhcCCCCcccCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhCCCccChhhHHHHHHccCCCCC
Q 047631 169 KELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICD-ARLQNLFGKPRVGHFEMLKLLESHFLTKE 245 (1232)
Q Consensus 169 peLaefLG~Ig~dd~~~lSR~dVvk~LWeYIK~nnLQDP~nKr~IiCD-ekLr~LFGk~rV~~feI~kLL~~Hl~~~d 245 (1232)
++|..||...|.- ....++-+|+..|-+||-.+.|.|+.+...|.|. +.|-+|||++.+.+-+-..++..|+...-
T Consensus 32 ~~LLkiLq~aGA~-~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nLv 108 (119)
T 1z1m_A 32 PLLLKLLKSVGAQ-KDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLV 108 (119)
T ss_dssp TTSHHHHHHHTCC-CSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCSCC
T ss_pred HHHHHHHHHhccc-cceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhcc
Confidence 4667777766654 4789999999999999999999999999999995 56699999999999887777777765544
No 15
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=93.89 E-value=0.0086 Score=53.70 Aligned_cols=23 Identities=52% Similarity=1.068 Sum_probs=21.0
Q ss_pred ceEEEeeccccccCCCCCCCCCC
Q 047631 1210 QRVCKFHESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1210 q~vc~~~~~g~C~~g~~c~y~h~ 1232 (1232)
+.||+||..|.|++|++|.|.|.
T Consensus 16 ~~vCk~fl~G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 16 TVVCKHWLRGLCKKGDQCEFLHE 38 (72)
T ss_dssp CSBCHHHHTTCCCCGGGSSSBCS
T ss_pred CeeCHHHhcCCCCCCCCCCCccc
Confidence 45999999999999999999995
No 16
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=93.43 E-value=0.029 Score=52.98 Aligned_cols=25 Identities=36% Similarity=0.960 Sum_probs=19.1
Q ss_pred CCceEEEeeccccccCCCCCCCCCC
Q 047631 1208 KGQRVCKFHESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1208 ~gq~vc~~~~~g~C~~g~~c~y~h~ 1232 (1232)
+-+.||+||..|.|++|..|.|.|.
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCCccCcccccCcCCCCCCCCCCCC
Confidence 3446888888888888888888884
No 17
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=93.15 E-value=0.059 Score=52.44 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=63.6
Q ss_pred ccHHHHHHHhhhcCCCCcccCHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhCCCccChhhHHHHHHccCCC
Q 047631 167 ASKELLDLVMHMRNGDKSALSQFDVQTLLLEYIKKYKLRDPQRRTHVICD-ARLQNLFGKPRVGHFEMLKLLESHFLT 243 (1232)
Q Consensus 167 lSpeLaefLG~Ig~dd~~~lSR~dVvk~LWeYIK~nnLQDP~nKr~IiCD-ekLr~LFGk~rV~~feI~kLL~~Hl~~ 243 (1232)
-.++|..||..+|.- ....|+-+|+-.|-+||-.+.|.|+.+...|.|. +.|-+|||++.+.+-+-..++..|+..
T Consensus 14 Pk~~LLklLq~~GA~-~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (115)
T 2axi_A 14 PKPLLLKLLKSVGAQ-KDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRN 90 (115)
T ss_dssp ECHHHHHHHHHTTCC-CSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhccc-cceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 346788889877765 4789999999999999999999999999999995 566999999999988766666655543
No 18
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=91.80 E-value=0.063 Score=47.59 Aligned_cols=23 Identities=35% Similarity=0.977 Sum_probs=16.2
Q ss_pred ceEEEee-ccccccCCCCCCCCCC
Q 047631 1210 QRVCKFH-ESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1210 q~vc~~~-~~g~C~~g~~c~y~h~ 1232 (1232)
.++|++| ..|.|+.|..|.|.|.
T Consensus 12 t~~C~~f~~~G~C~~G~~C~f~H~ 35 (77)
T 1m9o_A 12 TELCRTYSESGRCRYGAKCQFAHG 35 (77)
T ss_dssp SCCCSGGGGTSCCTTTTTCSSCSS
T ss_pred chhCHHhhhCCCcCCCCCccCCCC
Confidence 3577766 5777777777777773
No 19
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=90.43 E-value=0.052 Score=48.16 Aligned_cols=22 Identities=32% Similarity=0.982 Sum_probs=19.8
Q ss_pred eEEEeeccccccCCCC-CCCCCC
Q 047631 1211 RVCKFHESGHCKKGSQ-CDYLHT 1232 (1232)
Q Consensus 1211 ~vc~~~~~g~C~~g~~-c~y~h~ 1232 (1232)
.||++|..|-|++|++ |+|.|+
T Consensus 7 ~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 7 EVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EBCHHHHTTCCSSCTTTCSSBCC
T ss_pred hhCHHHhcCCCCCCCCCCCCccC
Confidence 4999999999999995 999994
No 20
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.74 E-value=0.068 Score=50.64 Aligned_cols=21 Identities=33% Similarity=1.040 Sum_probs=17.8
Q ss_pred EEEeeccccccCCC-CCCCCCC
Q 047631 1212 VCKFHESGHCKKGS-QCDYLHT 1232 (1232)
Q Consensus 1212 vc~~~~~g~C~~g~-~c~y~h~ 1232 (1232)
||++|.+|-|++|. .|+|.|+
T Consensus 22 VCr~FlrG~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 22 VCREFQRGNCARGETDCRFAHP 43 (98)
T ss_dssp BCSHHHHTCCSSHHHHCSSBCC
T ss_pred hhHHHhcCcCCCCCCCCCCcCC
Confidence 88888888888888 6888885
No 21
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=86.33 E-value=0.1 Score=56.36 Aligned_cols=21 Identities=43% Similarity=1.088 Sum_probs=20.1
Q ss_pred EEEeeccccccCCCCCCCCCC
Q 047631 1212 VCKFHESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1212 vc~~~~~g~C~~g~~c~y~h~ 1232 (1232)
+|.||-+|.|+.|+.|.|+|.
T Consensus 72 ~C~ffakG~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 72 FCLFFAKGMCCLGPKCEYLHH 92 (240)
T ss_dssp BCHHHHTTCCSCGGGCSSBBS
T ss_pred EcCccccCCCCCCCCCCccCC
Confidence 999999999999999999993
No 22
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=84.42 E-value=0.19 Score=44.57 Aligned_cols=20 Identities=35% Similarity=0.904 Sum_probs=19.1
Q ss_pred EEEeeccccccCCCCCCCCCC
Q 047631 1212 VCKFHESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1212 vc~~~~~g~C~~g~~c~y~h~ 1232 (1232)
||++|-+|.|..+ +|.|+|+
T Consensus 44 vC~~flkG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 44 VCMDYIKGRCSRE-KCKYFHP 63 (70)
T ss_dssp BCHHHHTTCCCCT-TCCSBCC
T ss_pred eccccCcCCCCCC-CcCeeCC
Confidence 8999999999999 9999996
No 23
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=84.22 E-value=0.22 Score=47.04 Aligned_cols=22 Identities=32% Similarity=0.824 Sum_probs=20.3
Q ss_pred eEEEee-ccccccCCCCCCCCCC
Q 047631 1211 RVCKFH-ESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1211 ~vc~~~-~~g~C~~g~~c~y~h~ 1232 (1232)
.+|+|| ..|+|+.|..|.|.|.
T Consensus 37 ~~C~~f~~~G~C~~G~~C~f~H~ 59 (98)
T 2cqe_A 37 FPCKLYHTTGNCINGDDCMFSHD 59 (98)
T ss_dssp SBCSHHHHTSCCSSCTTCSSBCC
T ss_pred CcCcCcccCCcCCCCCCCcccCC
Confidence 599999 6999999999999995
No 24
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=83.24 E-value=0.23 Score=43.95 Aligned_cols=22 Identities=36% Similarity=1.088 Sum_probs=0.0
Q ss_pred eEEE-eeccccccCCCCCCCCCC
Q 047631 1211 RVCK-FHESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1211 ~vc~-~~~~g~C~~g~~c~y~h~ 1232 (1232)
++|+ |+..|+|+.|..|.|.|+
T Consensus 51 ~~C~~f~~~G~C~~G~~C~f~H~ 73 (77)
T 1m9o_A 51 ELCHKFKLQGRCPYGSRCHFIHN 73 (77)
T ss_dssp -----------------------
T ss_pred CcccchhhCcCCCCcCcCCCCCC
Confidence 6997 557999999999999995
No 25
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=78.77 E-value=0.51 Score=43.54 Aligned_cols=21 Identities=29% Similarity=0.925 Sum_probs=19.0
Q ss_pred EEEeeccccccCCC-CCCCCCC
Q 047631 1212 VCKFHESGHCKKGS-QCDYLHT 1232 (1232)
Q Consensus 1212 vc~~~~~g~C~~g~-~c~y~h~ 1232 (1232)
||++|-+|-|..+. .|+|.|+
T Consensus 11 VCr~FlrG~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 11 VCREFQRGTCSRPDTECKFAHP 32 (83)
T ss_dssp BCTTGGGTCCCSCTTTCSSBCC
T ss_pred hcHHHhcCCCCCCCCCCCCcCC
Confidence 99999889999996 8999996
No 26
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.52 E-value=0.37 Score=43.42 Aligned_cols=20 Identities=35% Similarity=0.977 Sum_probs=18.5
Q ss_pred EEEeecc-ccccCCCCCCCCCC
Q 047631 1212 VCKFHES-GHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1212 vc~~~~~-g~C~~g~~c~y~h~ 1232 (1232)
||+||.. |+|. |..|.|.|.
T Consensus 40 ~C~~f~~~G~C~-~~~C~f~H~ 60 (77)
T 2d9n_A 40 ECYFYSKFGECS-NKECPFLHI 60 (77)
T ss_dssp BCHHHHHTCCCC-CSSCSSBCC
T ss_pred CCcccCCCCccC-CCCeeccCC
Confidence 8999977 9999 899999994
No 27
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.51 E-value=0.37 Score=45.64 Aligned_cols=20 Identities=35% Similarity=0.879 Sum_probs=19.2
Q ss_pred EEEeeccccccCCCCCCCCCC
Q 047631 1212 VCKFHESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1212 vc~~~~~g~C~~g~~c~y~h~ 1232 (1232)
||++|-+|.|..+ .|+|+|+
T Consensus 58 vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 58 VCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp BCHHHHHTCCCCT-TCCSBCC
T ss_pred cchhhccCCCCCC-CcCccCC
Confidence 9999999999999 9999996
No 28
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=76.13 E-value=0.4 Score=40.83 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=19.3
Q ss_pred eEEEee-ccccccCCCCCCCCCC
Q 047631 1211 RVCKFH-ESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1211 ~vc~~~-~~g~C~~g~~c~y~h~ 1232 (1232)
-||..| ..|+|++|..|++.|.
T Consensus 21 ~iC~~FSayGwCp~G~~Cp~SHD 43 (50)
T 2fc6_A 21 SICDNFSAYGWCPLGPQCPQSHD 43 (50)
T ss_dssp CBCSHHHHTCCCTTGGGCSSBCC
T ss_pred chhhhccccccCCCCCCCCcccc
Confidence 499555 9999999999999994
No 29
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=73.92 E-value=0.61 Score=43.66 Aligned_cols=21 Identities=29% Similarity=0.977 Sum_probs=20.0
Q ss_pred EEEeeccccccCCC-CCCCCCC
Q 047631 1212 VCKFHESGHCKKGS-QCDYLHT 1232 (1232)
Q Consensus 1212 vc~~~~~g~C~~g~-~c~y~h~ 1232 (1232)
||+.|-.|-|.++. .|+|.|+
T Consensus 19 VCrdFlrG~C~r~d~~CrfsH~ 40 (89)
T 2rpp_A 19 VCRQFQRGTCSRSDEECKFAHP 40 (89)
T ss_dssp BCHHHHHTCCCCCTTTSSSBCC
T ss_pred hchHHhcCCCCCCCCCCCCcCC
Confidence 99999999999998 9999996
No 30
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=70.33 E-value=0.87 Score=42.04 Aligned_cols=21 Identities=33% Similarity=0.790 Sum_probs=19.4
Q ss_pred eEEEeeccccccCCCCCCCCCC
Q 047631 1211 RVCKFHESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1211 ~vc~~~~~g~C~~g~~c~y~h~ 1232 (1232)
.||.+|-+|.|..+ +|+|+|+
T Consensus 44 ~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 44 IACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp ECCHHHHTTCCCCS-SCSSCCC
T ss_pred eehhHhhhccccCC-CcceeCC
Confidence 39999999999998 9999996
No 31
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=68.78 E-value=0.82 Score=40.93 Aligned_cols=21 Identities=33% Similarity=0.934 Sum_probs=19.1
Q ss_pred eEEEeecc-ccccCCCCCCCCCC
Q 047631 1211 RVCKFHES-GHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1211 ~vc~~~~~-g~C~~g~~c~y~h~ 1232 (1232)
.+|+||.. |.|.+ +.|.|.|.
T Consensus 45 ~~C~~f~~~G~C~~-~~C~y~H~ 66 (72)
T 2rhk_C 45 SECYFYSKFGECSN-KECPFLHI 66 (72)
T ss_dssp CBCHHHHHHSCCSB-TTCCSBCC
T ss_pred CcccccCCCCCCCC-CCeeccCC
Confidence 39999987 99999 99999995
No 32
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.72 E-value=4.1 Score=36.84 Aligned_cols=22 Identities=27% Similarity=0.837 Sum_probs=20.3
Q ss_pred eEEEeeccccccCCCCCCCCCC
Q 047631 1211 RVCKFHESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1211 ~vc~~~~~g~C~~g~~c~y~h~ 1232 (1232)
++|+.|+.|.|.-|..|.|-|-
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHG 42 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSS
T ss_pred ccCcccCcCCCCCCCccCCcCC
Confidence 6998889999999999999993
No 33
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=55.27 E-value=2.2 Score=39.92 Aligned_cols=21 Identities=33% Similarity=0.790 Sum_probs=19.2
Q ss_pred eEEEeeccccccCCCCCCCCCC
Q 047631 1211 RVCKFHESGHCKKGSQCDYLHT 1232 (1232)
Q Consensus 1211 ~vc~~~~~g~C~~g~~c~y~h~ 1232 (1232)
.||..|.+|.|..+ +|+|+|+
T Consensus 52 ~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 52 IACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp EBCHHHHHTCCCCT-TCCSBCC
T ss_pred eeehhhhhCcCCCC-CcceecC
Confidence 39999999999988 9999996
No 34
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=47.36 E-value=16 Score=34.75 Aligned_cols=36 Identities=17% Similarity=0.417 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHH
Q 047631 400 TEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEI 444 (1232)
Q Consensus 400 TEeEfeRw~q~~k~~~~k~PTv~dVeeKa~dIq~ai~~~~teeEI 444 (1232)
+=.||++|+..+ +.||-+|..+|+..-..++--.|+
T Consensus 22 ~l~~AekWR~qv---------ikEIs~Kv~~Iqn~~L~E~~IRdL 57 (92)
T 1x4t_A 22 ELPKAEKWRRQI---------IGEISKKVAQIQNAGLGEFRIRDL 57 (92)
T ss_dssp CHHHHHHHHHHH---------HHHHHHHHHHHHHCCSCHHHHHHH
T ss_pred CHHHHHHHHHHH---------HHHHHHHHHHhhCCCCCHHHHHHH
Confidence 457999999988 478999999999987666544443
No 35
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=43.63 E-value=5 Score=38.70 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=12.1
Q ss_pred CccccCchhhcccccCceEEEE
Q 047631 1 MCYTCTFSLCKGCTKDAVILCV 22 (1232)
Q Consensus 1 mCytCp~SvCk~C~k~a~F~~V 22 (1232)
+|+.||.|+|..|+.++-|...
T Consensus 71 ~C~~Cp~sfC~~c~~g~l~~~~ 92 (107)
T 4gne_A 71 FCEFCPHSFCKDHEKGALVPSA 92 (107)
T ss_dssp ECSSSSCEECTTTCTTSCEECT
T ss_pred CcCCCCcchhhhccCCcceecC
Confidence 3555555555555555555443
No 36
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.90 E-value=7.1 Score=34.00 Aligned_cols=37 Identities=14% Similarity=0.379 Sum_probs=28.7
Q ss_pred ccccCchhhcccccCceEEEEecCccchhhHHHHHHhhh
Q 047631 2 CYTCTFSLCKGCTKDAVILCVRGNKGFCETCMKTVMLIE 40 (1232)
Q Consensus 2 CytCp~SvCk~C~k~a~F~~VRgnKGfC~~C~~~~~LIE 40 (1232)
|++|. .|+.-+.+.+++.+++++-+|..|+.-+.+-+
T Consensus 31 CF~C~--~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 31 CALCV--RCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp TSCCS--SSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred cCEeC--CCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 77774 58887876667778899999999997666543
No 37
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=31.40 E-value=11 Score=31.78 Aligned_cols=22 Identities=41% Similarity=0.884 Sum_probs=17.1
Q ss_pred ccccC-ceEEEEecCccchhhHH
Q 047631 12 GCTKD-AVILCVRGNKGFCETCM 33 (1232)
Q Consensus 12 ~C~k~-a~F~~VRgnKGfC~~C~ 33 (1232)
.|.|. -.|+.--.|+|||..|.
T Consensus 17 kCRk~GC~fFGTpen~GFCTlCf 39 (48)
T 2eqe_A 17 KCRKAGCVYFGTPENKGFCTLCF 39 (48)
T ss_dssp BCSSTTCCSBCCTTTTTCCHHHH
T ss_pred hhhhcCCCcccCcccCceeeeeh
Confidence 35543 36888899999999996
No 38
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=26.27 E-value=73 Score=29.17 Aligned_cols=63 Identities=6% Similarity=-0.036 Sum_probs=43.7
Q ss_pred CcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhhhhhh-hhhhcc
Q 047631 397 QEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLRDR-ASDLGR 459 (1232)
Q Consensus 397 sdFTEeEfeRw~q~~k~~~~k~PTv~dVeeKa~dIq~ai~~~~teeEI~rL~~Lidr-A~EKgr 459 (1232)
.|=|++||+.|...+..-....-.-.....=+++|-+.+..++..+||.++.--++. ++||-+
T Consensus 9 ~P~Tk~dF~~~~~~l~~kl~~~~ks~~y~~f~~~lir~l~~~L~~~dikkv~s~l~~l~nEK~K 72 (80)
T 3bpj_A 9 NPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITNSLTVLCSEKQK 72 (80)
T ss_dssp CCCSHHHHHHHHHHHHHHHGGGTTSTTHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999988654333333333344466777788899999999987766654 566643
No 39
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.71 E-value=1.5e+02 Score=26.30 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=31.9
Q ss_pred eccCCcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhhhh
Q 047631 393 IISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQEVRVKDWMEAEILRLSHLR 451 (1232)
Q Consensus 393 ~VSNsdFTEeEfeRw~q~~k~~~~k~PTv~dVeeKa~dIq~ai~~~~teeEI~rL~~Li 451 (1232)
.+||.++|-+||...+..+.. -+.|+.+|-+. +.-..+|+-+|++.|
T Consensus 4 dlsDgpit~qeylevK~ALaa----------SeAkiQQLmkV--N~~ls~Elr~mQ~~l 50 (63)
T 2w6a_A 4 GSSDGAVTLQEYLELKKALAT----------SEAKVQQLMKV--NSSLSDELRKLQREI 50 (63)
T ss_dssp C--CCSSCHHHHHHHHHHHHH----------HHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHh----------hHHHHHHHHHH--hHhhhHHHHHHHHHH
Confidence 589999999999999988854 35566655544 444567777777444
No 40
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=22.90 E-value=51 Score=28.32 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=44.2
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhCCCccChhhHHHHHHccCCCC
Q 047631 185 ALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESHFLTK 244 (1232)
Q Consensus 185 ~lSR~dVvk~LWeYIK~nnLQDP~nKr~IiCDekLr~LFGk~rV~~feI~kLL~~Hl~~~ 244 (1232)
.|+|.+|...|.++|.+.--.+ ...|..|..|..-+|-+++.+.+|...|+.+|--.
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~---~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~ 58 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVD---EADVKLEASFKEDLGADXLDVVELVMELEDEFDME 58 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCC---SSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHCCC---HHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCc
Confidence 4688889999999988763222 34688999997789999999999999999998543
No 41
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=20.96 E-value=69 Score=27.81 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=47.5
Q ss_pred cccCHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhCCCccChhhHHHHHHccCCCC
Q 047631 184 SALSQFDVQTLLLEYIKKYKLRDPQRRTHVICDARLQNLFGKPRVGHFEMLKLLESHFLTK 244 (1232)
Q Consensus 184 ~~lSR~dVvk~LWeYIK~nnLQDP~nKr~IiCDekLr~LFGk~rV~~feI~kLL~~Hl~~~ 244 (1232)
..|+|.+|...|.++|.+.--.+ ...|..|..|..-+|-+++.+.+|...|+.+|--.
T Consensus 3 ~~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~ 60 (84)
T 2kwl_A 3 GSMDNDEIFSKVRSIISEQLDKK---EDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDK 60 (84)
T ss_dssp CCSTHHHHHHHHHHHHHHHHCCC---GGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCC---cccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 46899999999999998863222 34688999997789999999999999999988543
Done!