Your job contains 1 sequence.
>047634
GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDD
MELQTGDLPNYTTSDGSVCISF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047634
(82 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2168514 - symbol:NRPB7 species:3702 "Arabidops... 231 2.5e-19 1
FB|FBgn0051155 - symbol:Rpb7 "Rpb7" species:7227 "Drosoph... 167 1.4e-15 2
UNIPROTKB|F1PT38 - symbol:POLR2G "Uncharacterized protein... 175 2.1e-13 1
UNIPROTKB|Q5E9B8 - symbol:POLR2G "DNA-directed RNA polyme... 170 7.1e-13 1
UNIPROTKB|P62487 - symbol:POLR2G "DNA-directed RNA polyme... 170 7.1e-13 1
UNIPROTKB|I3LJZ9 - symbol:POLR2G "Uncharacterized protein... 170 7.1e-13 1
MGI|MGI:1914960 - symbol:Polr2g "polymerase (RNA) II (DNA... 170 7.1e-13 1
RGD|621284 - symbol:Polr2g "polymerase (RNA) II (DNA dire... 170 7.1e-13 1
ZFIN|ZDB-GENE-030131-2808 - symbol:polr2gl "polymerase (R... 170 7.1e-13 1
WB|WBGene00021845 - symbol:rpb-7 species:6239 "Caenorhabd... 167 1.5e-12 1
DICTYBASE|DDB_G0284891 - symbol:rpb7 "DNA-directed RNA po... 132 7.6e-09 1
ASPGD|ASPL0000041983 - symbol:AN1521 species:162425 "Emer... 99 1.3e-07 2
GENEDB_PFALCIPARUM|PF10_0269 - symbol:PF10_0269 "DNA-dire... 120 1.4e-07 1
UNIPROTKB|Q8IJC9 - symbol:PF10_0269 "DNA-directed RNA pol... 120 1.4e-07 1
POMBASE|SPACUNK4.06c - symbol:rpb7 "DNA-directed RNA poly... 115 4.8e-07 1
CGD|CAL0004143 - symbol:RPB7 species:5476 "Candida albica... 107 3.4e-06 1
UNIPROTKB|Q5A8Y7 - symbol:RPB7 "Likely RNA Pol II core co... 107 3.4e-06 1
TAIR|locus:2130060 - symbol:NRPE7 species:3702 "Arabidops... 96 7.0e-05 1
CGD|CAL0005692 - symbol:orf19.443 species:5476 "Candida a... 88 0.00078 1
TAIR|locus:2033077 - symbol:AT1G06790 species:3702 "Arabi... 88 0.00088 1
TAIR|locus:2084573 - symbol:NRPD7 species:3702 "Arabidops... 86 0.00097 1
>TAIR|locus:2168514 [details] [associations]
symbol:NRPB7 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IPI] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006351 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AB016890
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 EMBL:M90505 EMBL:BT005667 IPI:IPI00518175 PIR:A44457
RefSeq:NP_200726.1 UniGene:At.29242 ProteinModelPortal:P38421
SMR:P38421 STRING:P38421 PaxDb:P38421 PRIDE:P38421
EnsemblPlants:AT5G59180.1 GeneID:836036 KEGG:ath:AT5G59180
TAIR:At5g59180 eggNOG:COG1095 HOGENOM:HOG000158201
InParanoid:P38421 OMA:TRVDAND PhylomeDB:P38421
ProtClustDB:CLSN2686299 Genevestigator:P38421 GermOnline:AT5G59180
Gene3D:3.30.1490.120 SUPFAM:SSF88798 Uniprot:P38421
Length = 176
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 42/56 (75%), Positives = 50/56 (89%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
GRHGFVVAI G+++IG GLIRDG GFVTFPV+ QC+VFRPF+GEIL A VT+VNK+
Sbjct: 40 GRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKM 95
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 24/35 (68%), Positives = 26/35 (74%)
Query: 47 GAAVTMVNK-LIPDDMELQTGDLPNYTTSDGSVCI 80
G V+K LIPDDME Q GD+PNYTTSDGSV I
Sbjct: 102 GPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKI 136
>FB|FBgn0051155 [details] [associations]
symbol:Rpb7 "Rpb7" species:7227 "Drosophila melanogaster"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS;IPI] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 EMBL:AE014297
GO:GO:0003723 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 GO:GO:0005665 eggNOG:COG1095 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
EMBL:BT023312 EMBL:BT029405 RefSeq:NP_731983.1 UniGene:Dm.35954
UniGene:Dm.4143 SMR:Q9VFB5 STRING:Q9VFB5 EnsemblMetazoa:FBtr0083137
GeneID:261631 KEGG:dme:Dmel_CG31155 UCSC:CG31155-RA CTD:261631
FlyBase:FBgn0051155 InParanoid:Q9VFB5 OrthoDB:EOG46Q58R
GenomeRNAi:261631 NextBio:843782 Uniprot:Q9VFB5
Length = 173
Score = 167 (63.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 28/56 (50%), Positives = 44/56 (78%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ ++ IG+G+I+ G GFV +PV+ + IVFRPF+GE+L A V +NK+
Sbjct: 40 GKYGFVIAVTTIDQIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKV 95
Score = 42 (19.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 57 IPDDMEL-QTGDLPNYTTSDGSVCIS 81
IP DM+ G+ P Y + D V IS
Sbjct: 113 IPADMQFCPNGNPPCYKSKDEDVVIS 138
>UNIPROTKB|F1PT38 [details] [associations]
symbol:POLR2G "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR005576 Pfam:PF03876 GO:GO:0006351
GO:GO:0003899 Gene3D:3.30.1490.120 SUPFAM:SSF88798
GeneTree:ENSGT00390000008975 EMBL:AAEX03011662
Ensembl:ENSCAFT00000024524 Uniprot:F1PT38
Length = 118
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 30/58 (51%), Positives = 46/58 (79%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIP 58
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+ P
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVSP 97
>UNIPROTKB|Q5E9B8 [details] [associations]
symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
species:9913 "Bos taurus" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004672 "protein kinase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 GO:GO:0003723
GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201
OMA:TRVDAND Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BT021002
IPI:IPI00688959 RefSeq:NP_001015633.1 UniGene:Bt.9092
ProteinModelPortal:Q5E9B8 SMR:Q5E9B8 STRING:Q5E9B8
Ensembl:ENSBTAT00000012481 GeneID:526320 KEGG:bta:526320 CTD:5436
GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 InParanoid:Q5E9B8
OrthoDB:EOG451DRZ NextBio:20874346 Uniprot:Q5E9B8
Length = 172
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 29/56 (51%), Positives = 45/56 (80%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKV 95
>UNIPROTKB|P62487 [details] [associations]
symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IDA;TAS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 Reactome:REACT_116125
GO:GO:0006915 GO:GO:0016032 EMBL:CH471076 Reactome:REACT_1675
GO:GO:0006468 GO:GO:0003723 GO:GO:0006368 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 GO:GO:0005665 PDB:2C35 PDBsum:2C35 eggNOG:COG1095
HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
SUPFAM:SSF88798 CTD:5436 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
EMBL:U20659 EMBL:U52427 EMBL:AK312131 EMBL:BC112162 EMBL:BC112164
IPI:IPI00218895 RefSeq:NP_002687.1 UniGene:Hs.14839
ProteinModelPortal:P62487 SMR:P62487 DIP:DIP-32663N IntAct:P62487
MINT:MINT-1033626 STRING:P62487 PhosphoSite:P62487 DMDM:50403601
PaxDb:P62487 PeptideAtlas:P62487 PRIDE:P62487
Ensembl:ENST00000301788 GeneID:5436 KEGG:hsa:5436 UCSC:uc001nva.3
GeneCards:GC11P062529 HGNC:HGNC:9194 MIM:602013 neXtProt:NX_P62487
PharmGKB:PA33514 InParanoid:P62487 PhylomeDB:P62487
EvolutionaryTrace:P62487 GenomeRNAi:5436 NextBio:21033
ArrayExpress:P62487 Bgee:P62487 CleanEx:HS_POLR2G
Genevestigator:P62487 GermOnline:ENSG00000168002 Uniprot:P62487
Length = 172
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 29/56 (51%), Positives = 45/56 (80%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKV 95
>UNIPROTKB|I3LJZ9 [details] [associations]
symbol:POLR2G "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
GO:GO:0003723 GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0003899 KO:K03015 GO:GO:0005665 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
EMBL:FP312617 RefSeq:XP_003353863.1 ProteinModelPortal:I3LJZ9
SMR:I3LJZ9 Ensembl:ENSSSCT00000022560 GeneID:100620235
KEGG:ssc:100620235 Uniprot:I3LJZ9
Length = 172
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 29/56 (51%), Positives = 45/56 (80%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKV 95
>MGI|MGI:1914960 [details] [associations]
symbol:Polr2g "polymerase (RNA) II (DNA directed)
polypeptide G" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
MGI:MGI:1914960 GO:GO:0006915 GO:GO:0003723 GO:GO:0004672
GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:5436
GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
EMBL:AK010687 EMBL:AK011627 EMBL:AK013134 EMBL:AK017473
EMBL:BC005580 EMBL:BC055278 IPI:IPI00263106 RefSeq:NP_080605.1
UniGene:Mm.22117 ProteinModelPortal:P62488 SMR:P62488 STRING:P62488
PhosphoSite:P62488 REPRODUCTION-2DPAGE:P62488 PaxDb:P62488
PRIDE:P62488 Ensembl:ENSMUST00000096261 GeneID:67710 KEGG:mmu:67710
UCSC:uc008gna.1 InParanoid:P62488 NextBio:325333 Bgee:P62488
CleanEx:MM_POLR2G Genevestigator:P62488
GermOnline:ENSMUSG00000071662 Uniprot:P62488
Length = 172
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 29/56 (51%), Positives = 45/56 (80%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKV 95
>RGD|621284 [details] [associations]
symbol:Polr2g "polymerase (RNA) II (DNA directed) polypeptide G"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=ISO;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISO;ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0006915 "apoptotic process"
evidence=IEP] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
Pfam:PF03876 RGD:621284 GO:GO:0006915 GO:GO:0003723 GO:GO:0004672
GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:5436
GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
EMBL:Z71925 EMBL:BC060550 EMBL:BC060595 IPI:IPI00326378
RefSeq:NP_446400.1 UniGene:Rn.106248 ProteinModelPortal:P62489
SMR:P62489 STRING:P62489 PRIDE:P62489 Ensembl:ENSRNOT00000026313
GeneID:117017 KEGG:rno:117017 UCSC:RGD:621284 InParanoid:P62489
NextBio:619759 Genevestigator:P62489 GermOnline:ENSRNOG00000019439
Uniprot:P62489
Length = 172
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 29/56 (51%), Positives = 45/56 (80%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKV 95
>ZFIN|ZDB-GENE-030131-2808 [details] [associations]
symbol:polr2gl "polymerase (RNA) II (DNA directed)
polypeptide G-like" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
ZFIN:ZDB-GENE-030131-2808 GO:GO:0006468 GO:GO:0003723 GO:GO:0006366
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
HOVERGEN:HBG055233 OrthoDB:EOG451DRZ EMBL:BC045299 IPI:IPI00493928
RefSeq:NP_955963.1 UniGene:Dr.2883 ProteinModelPortal:Q7ZW41
SMR:Q7ZW41 STRING:Q7ZW41 PRIDE:Q7ZW41 Ensembl:ENSDART00000078557
GeneID:324088 KEGG:dre:324088 CTD:324088 InParanoid:Q7ZW41
NextBio:20808583 Bgee:Q7ZW41 Uniprot:Q7ZW41
Length = 172
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 29/56 (51%), Positives = 45/56 (80%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKV 95
>WB|WBGene00021845 [details] [associations]
symbol:rpb-7 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0004601 "peroxidase activity"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0043652 "engulfment of apoptotic
cell" evidence=IMP] InterPro:IPR003029 InterPro:IPR005576
Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000003
GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043652 InterPro:IPR022967 SMART:SM00316
GO:GO:0003899 GO:GO:0001703 KO:K03015 eggNOG:COG1095
HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
SUPFAM:SSF88798 GeneTree:ENSGT00390000008975 EMBL:FO081636
RefSeq:NP_491093.1 HSSP:Q57840 ProteinModelPortal:Q9N3C9 SMR:Q9N3C9
STRING:Q9N3C9 PaxDb:Q9N3C9 EnsemblMetazoa:Y54E10BR.6 GeneID:171877
KEGG:cel:CELE_Y54E10BR.6 UCSC:Y54E10BR.6 CTD:171877
WormBase:Y54E10BR.6 InParanoid:Q9N3C9 NextBio:873067 Uniprot:Q9N3C9
Length = 197
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 29/56 (51%), Positives = 44/56 (78%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ +++IG GLI+ G GFV +PVR + IVFRPF+G+++ VT VNK+
Sbjct: 63 GKYGFVIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKV 118
>DICTYBASE|DDB_G0284891 [details] [associations]
symbol:rpb7 "DNA-directed RNA polymerase II subunit
7" species:44689 "Dictyostelium discoideum" [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IGI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IGI] [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
Pfam:PF03876 dictyBase:DDB_G0284891 GenomeReviews:CM000153_GR
EMBL:AAFI02000073 GO:GO:0003723 GO:GO:0006366 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016591
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798
RefSeq:XP_639913.1 HSSP:P62487 ProteinModelPortal:Q54P04 SMR:Q54P04
STRING:Q54P04 PRIDE:Q54P04 EnsemblProtists:DDB0216295
GeneID:8624825 KEGG:ddi:DDB_G0284891 OMA:HAIGSIK
ProtClustDB:PTZ00162 Uniprot:Q54P04
Length = 172
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
GR+GF++ I V+ + G + + G+V F V+ + I+F+PF+GE+L A VT V L
Sbjct: 40 GRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNL 95
>ASPGD|ASPL0000041983 [details] [associations]
symbol:AN1521 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0031123 "RNA 3'-end
processing" evidence=IEA] [GO:0097394 "telomeric RNA transcription
from RNA pol II promoter" evidence=IEA] [GO:0000291
"nuclear-transcribed mRNA catabolic process, exonucleolytic"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 EMBL:BN001307
GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 eggNOG:COG1095 HOGENOM:HOG000158201 Gene3D:3.30.1490.120
SUPFAM:SSF88798 OMA:HAIGSIK OrthoDB:EOG4JT3FQ EMBL:AACD01000024
RefSeq:XP_659125.1 STRING:Q5BD59 EnsemblFungi:CADANIAT00008149
GeneID:2875079 KEGG:ani:AN1521.2 Uniprot:Q5BD59
Length = 169
Score = 99 (39.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV 53
G H FV+ +M + IG G + G G + ++ + I+++PFRGE + A VT V
Sbjct: 40 GDH-FVICVMDMVDIGEGRVLPGNGQAEYTIKYRAIIWKPFRGETVDALVTSV 91
Score = 33 (16.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 49 AVTMVNKLIPDDMELQTGDLP-NYT 72
+V + K IP D+ + +P YT
Sbjct: 104 SVFIARKNIPSDIRWEPNTVPPQYT 128
>GENEDB_PFALCIPARUM|PF10_0269 [details] [associations]
symbol:PF10_0269 "DNA-directed RNA polymerase
II, putative" species:5833 "Plasmodium falciparum" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
Pfam:PF03876 GO:GO:0003723 GO:GO:0006366 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AE014185 GO:GO:0003899
KO:K03015 GO:GO:0005665 HOGENOM:HOG000158201 Gene3D:3.30.1490.120
SUPFAM:SSF88798 OMA:HAIGSIK ProtClustDB:PTZ00162
RefSeq:XP_001347553.1 ProteinModelPortal:Q8IJC9
EnsemblProtists:PF10_0269:mRNA GeneID:810426 KEGG:pfa:PF10_0269
EuPathDB:PlasmoDB:PF3D7_1027400 Uniprot:Q8IJC9
Length = 177
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
++G+V+ ++ + G ++DG G + V+ Q IVF+PF+ E+L A VT VNKL
Sbjct: 41 KYGYVICVIRIIHSEPGRVQDGTGMIVVKVKYQAIVFKPFKDEVLDAIVTDVNKL 95
>UNIPROTKB|Q8IJC9 [details] [associations]
symbol:PF10_0269 "DNA-directed RNA polymerase II, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
GO:GO:0003723 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AE014185 GO:GO:0003899 KO:K03015 GO:GO:0005665
HOGENOM:HOG000158201 Gene3D:3.30.1490.120 SUPFAM:SSF88798
OMA:HAIGSIK ProtClustDB:PTZ00162 RefSeq:XP_001347553.1
ProteinModelPortal:Q8IJC9 EnsemblProtists:PF10_0269:mRNA
GeneID:810426 KEGG:pfa:PF10_0269 EuPathDB:PlasmoDB:PF3D7_1027400
Uniprot:Q8IJC9
Length = 177
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
++G+V+ ++ + G ++DG G + V+ Q IVF+PF+ E+L A VT VNKL
Sbjct: 41 KYGYVICVIRIIHSEPGRVQDGTGMIVVKVKYQAIVFKPFKDEVLDAIVTDVNKL 95
>POMBASE|SPACUNK4.06c [details] [associations]
symbol:rpb7 "DNA-directed RNA polymerase complex II
subunit Rpb7" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=TAS] [GO:0016591 "DNA-directed
RNA polymerase II, holoenzyme" evidence=IC] [GO:0031123 "RNA 3'-end
processing" evidence=IPI] [GO:0097394 "telomeric RNA transcription
from RNA pol II promoter" evidence=IMP] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IDA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PomBase:SPACUNK4.06c
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367
GO:GO:0016591 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 GO:GO:0031123 PDB:3H0G PDBsum:3H0G eggNOG:COG1095
HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
SUPFAM:SSF88798 EMBL:D89594 EMBL:D86554 EMBL:AF027821 EMBL:AF055916
PIR:T39254 RefSeq:XP_001713072.1 ProteinModelPortal:O14459
IntAct:O14459 MINT:MINT-1213963 STRING:O14459
EnsemblFungi:SPACUNK4.06c.1 GeneID:2542097 KEGG:spo:SPACUNK4.06c
OrthoDB:EOG4JT3FQ EvolutionaryTrace:O14459 NextBio:20803169
GO:GO:0097394 Uniprot:O14459
Length = 172
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 1 GRHGFVVAIMGVESIGT--GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++G+++ ++ +I G + G GF F V+ + +++RPFRGE++ A VT VNK+
Sbjct: 41 GQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKM 98
>CGD|CAL0004143 [details] [associations]
symbol:RPB7 species:5476 "Candida albicans" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;IGI;ISS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IGI;ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IGI;ISS] [GO:0042493 "response to drug"
evidence=IMP] [GO:0005829 "cytosol" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0031123 "RNA
3'-end processing" evidence=IEA] [GO:0000291 "nuclear-transcribed
mRNA catabolic process, exonucleolytic" evidence=IEA] [GO:0060213
"positive regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0045948 "positive regulation of
translational initiation" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126
CGD:CAL0004143 GO:GO:0042493 GO:GO:0003723 GO:GO:0006366
Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AACQ01000045
EMBL:AACQ01000042 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0003899 KO:K03015 GO:GO:0005665 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 RefSeq:XP_718170.1
RefSeq:XP_718437.1 ProteinModelPortal:Q5A8Y7 SMR:Q5A8Y7
STRING:Q5A8Y7 GeneID:3639930 GeneID:3640221 KEGG:cal:CaO19.10855
KEGG:cal:CaO19.3347 Uniprot:Q5A8Y7
Length = 173
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+ G++V ++ +I G G I G F V+ + +V++PF+GE++ A VT VNK+
Sbjct: 40 GQFGYIVCVLDSMNIDVGKGRIIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKM 97
>UNIPROTKB|Q5A8Y7 [details] [associations]
symbol:RPB7 "Likely RNA Pol II core complex subunit"
species:237561 "Candida albicans SC5314" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IGI] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IGI] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0042493 "response to drug" evidence=IMP] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126
CGD:CAL0004143 GO:GO:0042493 GO:GO:0003723 GO:GO:0006366
Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AACQ01000045
EMBL:AACQ01000042 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0003899 KO:K03015 GO:GO:0005665 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 RefSeq:XP_718170.1
RefSeq:XP_718437.1 ProteinModelPortal:Q5A8Y7 SMR:Q5A8Y7
STRING:Q5A8Y7 GeneID:3639930 GeneID:3640221 KEGG:cal:CaO19.10855
KEGG:cal:CaO19.3347 Uniprot:Q5A8Y7
Length = 173
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+ G++V ++ +I G G I G F V+ + +V++PF+GE++ A VT VNK+
Sbjct: 40 GQFGYIVCVLDSMNIDVGKGRIIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKM 97
>TAIR|locus:2130060 [details] [associations]
symbol:NRPE7 species:3702 "Arabidopsis thaliana"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IPI]
InterPro:IPR005576 Pfam:PF03876 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 GO:GO:0000419
Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BT030624 IPI:IPI00536833
RefSeq:NP_193202.2 UniGene:At.49694 ProteinModelPortal:A6QRA1
STRING:A6QRA1 PaxDb:A6QRA1 PRIDE:A6QRA1 EnsemblPlants:AT4G14660.1
GeneID:827116 KEGG:ath:AT4G14660 TAIR:At4g14660 eggNOG:NOG264504
HOGENOM:HOG000241228 InParanoid:A6QRA1 KO:K16253 OMA:KVQLPWN
PhylomeDB:A6QRA1 ProtClustDB:CLSN2688679 Genevestigator:A6QRA1
Uniprot:A6QRA1
Length = 178
Score = 96 (38.9 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMEL 63
G+ VA+ ++ IG G IR+ G V FPV + F+ F+GEI+ +V+K++ + +
Sbjct: 47 GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHG---VVHKVLKHGVFM 103
Query: 64 QTGDLPN 70
+ G + N
Sbjct: 104 RCGPIEN 110
>CGD|CAL0005692 [details] [associations]
symbol:orf19.443 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0006384 "transcription initiation
from RNA polymerase III promoter" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 CGD:CAL0005692
GO:GO:0003677 GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0003899 EMBL:AACQ01000078 EMBL:AACQ01000077 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448
RefSeq:XP_715878.1 RefSeq:XP_715928.1 ProteinModelPortal:Q5A298
SMR:Q5A298 STRING:Q5A298 GeneID:3642414 GeneID:3642463
KEGG:cal:CaO19.443 KEGG:cal:CaO19.8073 Uniprot:Q5A298
Length = 195
Score = 88 (36.0 bits), Expect = 0.00078, P = 0.00078
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G V+ I + I GL++ G G VR + IV++PFRGEIL VT
Sbjct: 43 GLVITIWDILDIKDGLLKPGDGGSYVEVRFRSIVWKPFRGEILTGWVT 90
>TAIR|locus:2033077 [details] [associations]
symbol:AT1G06790 species:3702 "Arabidopsis thaliana"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] InterPro:IPR005576 Pfam:PF03876
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006351
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011001 GO:GO:0003899
UniGene:At.26438 UniGene:At.48160 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA EMBL:AY065288
EMBL:AY142661 IPI:IPI00527075 PIR:G86202 RefSeq:NP_172164.1
ProteinModelPortal:Q9M9Y6 SMR:Q9M9Y6 IntAct:Q9M9Y6 STRING:Q9M9Y6
PaxDb:Q9M9Y6 PRIDE:Q9M9Y6 DNASU:837190 EnsemblPlants:AT1G06790.1
GeneID:837190 KEGG:ath:AT1G06790 TAIR:At1g06790 InParanoid:Q9M9Y6
PhylomeDB:Q9M9Y6 ProtClustDB:CLSN2682503 ArrayExpress:Q9M9Y6
Genevestigator:Q9M9Y6 Uniprot:Q9M9Y6
Length = 204
Score = 88 (36.0 bits), Expect = 0.00088, P = 0.00088
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGA 48
G V+I ++S+ G + G G T+ V + +VFRPF GE++ A
Sbjct: 43 GLCVSIYDIKSVEGGFVLPGDGAATYKVGLRIVVFRPFVGEVIAA 87
>TAIR|locus:2084573 [details] [associations]
symbol:NRPD7 species:3702 "Arabidopsis thaliana"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0000418
"DNA-directed RNA polymerase IV complex" evidence=IPI]
InterPro:IPR005576 Pfam:PF03876 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 GO:GO:0000418
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000241228 KO:K16253
ProtClustDB:CLSN2688679 EMBL:AY085637 IPI:IPI00522501
RefSeq:NP_566719.1 UniGene:At.37797 ProteinModelPortal:Q8LE42
STRING:Q8LE42 PaxDb:Q8LE42 PRIDE:Q8LE42 EnsemblPlants:AT3G22900.1
GeneID:821862 KEGG:ath:AT3G22900 TAIR:At3g22900 eggNOG:NOG327805
InParanoid:Q8LE42 OMA:RIQIGAR PhylomeDB:Q8LE42
Genevestigator:Q8LE42 Uniprot:Q8LE42
Length = 174
Score = 86 (35.3 bits), Expect = 0.00097, P = 0.00097
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+++ +E+IG G I++ G + FPV I F+ F+GEI+ V V+K
Sbjct: 46 GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHK 97
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.328 0.147 0.455 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 82 82 0.00091 102 3 11 22 0.37 29
29 0.43 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 490 (52 KB)
Total size of DFA: 92 KB (2068 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.12u 0.16s 8.28t Elapsed: 00:00:00
Total cpu time: 8.12u 0.16s 8.28t Elapsed: 00:00:00
Start: Tue May 21 03:04:38 2013 End: Tue May 21 03:04:38 2013