BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047634
(82 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224056563|ref|XP_002298912.1| predicted protein [Populus trichocarpa]
gi|222846170|gb|EEE83717.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 72/98 (73%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVAI G+E+IG GLIRDG GFVTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 40 GRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME QTGD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMEFQTGDMPNYTTSDGSVKIQ 137
>gi|255558950|ref|XP_002520498.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223540340|gb|EEF41911.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 72/98 (73%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVAI G+ES+G GLIRDG GFVTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 40 GRHGFVVAITGIESVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q+GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQ 137
>gi|449466050|ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449518487|ref|XP_004166273.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 176
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 72/98 (73%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVAI G+E+IG GLIRDG GFVTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 40 GRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q+GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQ 137
>gi|357476433|ref|XP_003608502.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|217071674|gb|ACJ84197.1| unknown [Medicago truncatula]
gi|355509557|gb|AES90699.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|388514911|gb|AFK45517.1| unknown [Medicago truncatula]
Length = 176
Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 72/98 (73%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVA+ G+E+IG G+IRDG GFVTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 40 GRHGFVVAVTGIENIGKGIIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME QTGD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMEFQTGDMPNYTTSDGSVKIQ 137
>gi|351722267|ref|NP_001236982.1| DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
gi|356512183|ref|XP_003524800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Glycine max]
gi|1173137|sp|P46279.1|RPB7_SOYBN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|170052|gb|AAA34005.1| RNA polymerase II [Glycine max]
gi|255626843|gb|ACU13766.1| unknown [Glycine max]
Length = 176
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 72/98 (73%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVA+ G+E+IG GLIRDG GFVTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 40 GRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q+GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQ 137
>gi|225434800|ref|XP_002282298.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147841138|emb|CAN75204.1| hypothetical protein VITISV_042914 [Vitis vinifera]
gi|297745997|emb|CBI16053.3| unnamed protein product [Vitis vinifera]
Length = 176
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 72/98 (73%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVAI G+E++G GLIRDG GFVTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 40 GRHGFVVAITGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q+GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQ 137
>gi|297796859|ref|XP_002866314.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
gi|297312149|gb|EFH42573.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
Length = 176
Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 71/98 (72%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVAI G+ESIG GLIRDG GFVTFPV+ QC+VFRPF+GEIL A VT+VNK
Sbjct: 40 GRHGFVVAITGIESIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQ 137
>gi|388502464|gb|AFK39298.1| unknown [Lotus japonicus]
Length = 176
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/98 (64%), Positives = 72/98 (73%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVA+ G+E++G GLIRDG GFVTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 40 GRHGFVVAVTGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q+GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQ 137
>gi|357133761|ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 177
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 71/98 (72%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVAI GVE IG GLIR+G GFVTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 40 GRHGFVVAITGVEDIGKGLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q+GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQ 137
>gi|326497319|dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 177
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 71/98 (72%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVAI GVE IG GLIR+G GFVTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 40 GRHGFVVAITGVEDIGKGLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q+GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQ 137
>gi|226500588|ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|242056199|ref|XP_002457245.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|242090461|ref|XP_002441063.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|194708012|gb|ACF88090.1| unknown [Zea mays]
gi|195628342|gb|ACG36001.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|241929220|gb|EES02365.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|241946348|gb|EES19493.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|413945277|gb|AFW77926.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 177
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 71/98 (72%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVAI GVE IG GLIR+G G+VTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 40 GRHGFVVAITGVEDIGKGLIREGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q+GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQ 137
>gi|326496519|dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 236
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 71/98 (72%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVAI GVE IG GLIR+G GFVTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 99 GRHGFVVAITGVEDIGKGLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 158
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q+GD+PNYTTSDGSV I
Sbjct: 159 EAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQ 196
>gi|15237831|ref|NP_200726.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]
gi|585917|sp|P38421.1|RPB7_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|166854|gb|AAA32861.1| RNA polymerase II [Arabidopsis thaliana]
gi|9759239|dbj|BAB09763.1| DNA-directed RNA polymerase II 19 kD polypeptide (RNA polymerase II
subunit 5) [Arabidopsis thaliana]
gi|26452908|dbj|BAC43532.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|28973525|gb|AAO64087.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|332009771|gb|AED97154.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]
Length = 176
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/98 (64%), Positives = 71/98 (72%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVAI G+++IG GLIRDG GFVTFPV+ QC+VFRPF+GEIL A VT+VNK
Sbjct: 40 GRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQ 137
>gi|115463767|ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|50878367|gb|AAT85142.1| putative RNA polymerase II subunit 5 [Oryza sativa Japonica Group]
gi|113579034|dbj|BAF17397.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|125552268|gb|EAY97977.1| hypothetical protein OsI_19896 [Oryza sativa Indica Group]
gi|215704281|dbj|BAG93121.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196761|gb|EEC79188.1| hypothetical protein OsI_19893 [Oryza sativa Indica Group]
gi|222631528|gb|EEE63660.1| hypothetical protein OsJ_18478 [Oryza sativa Japonica Group]
Length = 177
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/98 (64%), Positives = 71/98 (72%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVAI GVE +G GLIR+G G+VTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 40 GRHGFVVAITGVEDVGKGLIREGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q+GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQ 137
>gi|168056096|ref|XP_001780058.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668556|gb|EDQ55161.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 177
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 69/98 (70%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVA+ VE+IG+GLIRDG GFVTFPV+ QC+VFRPF+GEIL + VTMVNK
Sbjct: 40 GRHGFVVAVTAVETIGSGLIRDGTGFVTFPVKYQCVVFRPFKGEILESVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDM Q+ D+PNY TSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMAFQSDDVPNYKTSDGSVRIQ 137
>gi|302754896|ref|XP_002960872.1| hypothetical protein SELMODRAFT_75793 [Selaginella moellendorffii]
gi|302767440|ref|XP_002967140.1| hypothetical protein SELMODRAFT_87027 [Selaginella moellendorffii]
gi|300165131|gb|EFJ31739.1| hypothetical protein SELMODRAFT_87027 [Selaginella moellendorffii]
gi|300171811|gb|EFJ38411.1| hypothetical protein SELMODRAFT_75793 [Selaginella moellendorffii]
Length = 177
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 66/98 (67%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVA+ GV++IG GLIRDG G+VTFP+ QC+VFRPF+GEIL VT+VNK
Sbjct: 40 GRHGFVVAVTGVDTIGKGLIRDGTGYVTFPIHYQCVVFRPFKGEILEGVVTLVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDM Q+GD+P Y TSD SV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMSFQSGDVPCYETSDSSVRIQ 137
>gi|111140005|gb|ABH06364.1| RNA polymerase II [Sorbus aucuparia]
Length = 110
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 50/56 (89%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+HGFVVAI G+E+IG G+IRDG GFV+FP++ QC+VFRPF+GEIL A VTMVNK+
Sbjct: 36 GQHGFVVAITGIENIGKGMIRDGTGFVSFPMKYQCVVFRPFKGEILEAVVTMVNKM 91
>gi|241176966|ref|XP_002399817.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|215495205|gb|EEC04846.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
Length = 173
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFVVA+M +++IG GLI+ G GFV +PVR IVFRPF+GE+L A VT VNK+
Sbjct: 38 GKYGFVVAVMTIDNIGAGLIQPGRGFVVYPVRYTAIVFRPFKGEVLDAVVTQVNKVSGVG 97
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP DM+ + P Y T D V I
Sbjct: 98 APDTDSVCISFQSIPSDMQFDPNSNPPCYRTQDEDVIIQ 136
>gi|442759309|gb|JAA71813.1| Putative dna-directed rna polymerase subunit e' [Ixodes ricinus]
Length = 171
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFVVA+M +++IG GLI+ G GFV +PVR IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVVAVMTIDNIGAGLIQPGRGFVVYPVRYTAIVFRPFKGEVLDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP DM+ + P Y T D V I
Sbjct: 100 EIGPLSCFISRHSIPSDMQFDPNSNPPCYRTQDEDVIIQ 138
>gi|324530828|gb|ADY49116.1| DNA-directed RNA polymerase II subunit RPB7 [Ascaris suum]
Length = 174
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG+GLI+ G GFV +PV+ + IVFRPF+G+++ A V+ VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGSGLIQPGRGFVVYPVKYKAIVFRPFKGQVVDAVVSQVNKVGIFC 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP DME + + P Y T D SV I
Sbjct: 100 DIGPMSCFVSRHCIPPDMEFEPNANPPCYKTQDESVVIK 138
>gi|427786803|gb|JAA58853.1| Putative polymerase rna ii dna directed polypeptide g
[Rhipicephalus pulchellus]
Length = 171
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFVVA+ +++IG GLI+ G GFV +PVR + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVVAVTTIDNIGGGLIQPGRGFVVYPVRYKAIVFRPFKGEVLDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP DM+ + P Y T D + I
Sbjct: 100 EIGPLSCFISRHSIPSDMQFDPNSNPPCYRTQDEDIIIQ 138
>gi|325304060|tpg|DAA34731.1| TPA_inf: DNA-directed RNA polymerase subunit E' [Amblyomma
variegatum]
gi|346469865|gb|AEO34777.1| hypothetical protein [Amblyomma maculatum]
Length = 171
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFVVA+ +++IG GLI+ G GFV +PVR + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVVAVTTIDNIGGGLIQPGRGFVVYPVRYKAIVFRPFKGEVLDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP DM+ + P Y T D + I
Sbjct: 100 EIGPLSCFISRHSIPSDMQFDPNSNPPCYRTQDEDIIIQ 138
>gi|312072366|ref|XP_003139033.1| polymerase [Loa loa]
gi|307765805|gb|EFO25039.1| DNA-directed RNA polymerase II subunit RPB7 [Loa loa]
Length = 174
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFVVA+ +++IG GLI+ G GFV +PV+ + IVFRPF+G+++ A V VNK+
Sbjct: 40 GKYGFVVAVTTIDNIGAGLIQPGRGFVLYPVKYKAIVFRPFKGQVVDAVVNQVNKVGLFC 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP DME + + P Y T+D SV I
Sbjct: 100 DIGPLSCFVSRHCIPPDMEFEPNSNPPCYKTADESVVIK 138
>gi|170030019|ref|XP_001842888.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Culex
quinquefasciatus]
gi|167865348|gb|EDS28731.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Culex
quinquefasciatus]
Length = 173
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 18/100 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ ++ IG+G+I+ G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDDIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGMFA 99
Query: 57 -------------IPDDMEL-QTGDLPNYTTSDGSVCISF 82
IP DM+ G+ P Y + D V I+
Sbjct: 100 EIGPLSCFISHHSIPADMQFCPNGNPPCYKSKDEDVVIAL 139
>gi|157136015|ref|XP_001656728.1| DNA-directed RNA polymerase II 19 kDa polypeptide rpb7 [Aedes
aegypti]
gi|108881096|gb|EAT45321.1| AAEL003401-PA [Aedes aegypti]
Length = 173
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 18/100 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ ++ IG+GLI G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDDIGSGLILPGQGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGMFA 99
Query: 57 -------------IPDDMEL-QTGDLPNYTTSDGSVCISF 82
IP DM+ G+ P Y + D V I+
Sbjct: 100 QIGPLSCFISHHSIPADMQFCPNGNPPCYKSQDEDVVIAL 139
>gi|321461059|gb|EFX72094.1| hypothetical protein DAPPUDRAFT_308561 [Daphnia pulex]
Length = 172
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+G++L A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGQVLDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQTGDLPN-YTTSDGSVCIS 81
IP DM+ P Y T D V I
Sbjct: 100 EIGPLSCFISRHSIPSDMQFDPNSTPPCYKTQDEDVVIQ 138
>gi|24647020|ref|NP_731983.1| Rpb7 [Drosophila melanogaster]
gi|195328827|ref|XP_002031113.1| GM25797 [Drosophila sechellia]
gi|195570746|ref|XP_002103365.1| GD20374 [Drosophila simulans]
gi|23171325|gb|AAF55145.2| Rpb7 [Drosophila melanogaster]
gi|66772833|gb|AAY55728.1| IP02321p [Drosophila melanogaster]
gi|117935442|gb|ABK57062.1| IP02323p [Drosophila melanogaster]
gi|194120056|gb|EDW42099.1| GM25797 [Drosophila sechellia]
gi|194199292|gb|EDX12868.1| GD20374 [Drosophila simulans]
gi|220951186|gb|ACL88136.1| Rpb7-PA [synthetic construct]
gi|220960522|gb|ACL92797.1| Rpb7-PA [synthetic construct]
Length = 173
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ ++ IG+G+I+ G GFV +PV+ + IVFRPF+GE+L A V +NK+
Sbjct: 40 GKYGFVIAVTTIDQIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFA 99
Query: 57 -------------IPDDMEL-QTGDLPNYTTSDGSVCIS 81
IP DM+ G+ P Y + D V IS
Sbjct: 100 EIGPLSCFISHHSIPADMQFCPNGNPPCYKSKDEDVVIS 138
>gi|198430459|ref|XP_002120172.1| PREDICTED: similar to DNA directed RNA polymerase II polypeptide G
[Ciona intestinalis]
Length = 172
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G+HGFV+A+ +++IG GLI+ G GFV +P++ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKHGFVIAVTTIDNIGDGLIQPGRGFVLYPIKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQTGDLPN-YTTSDGSVCIS 81
IP DM+ P Y T D V I
Sbjct: 100 EIGPMSCFISRHSIPADMKFDPESHPPCYKTDDEDVVIQ 138
>gi|125777779|ref|XP_001359725.1| GA16051 [Drosophila pseudoobscura pseudoobscura]
gi|194767707|ref|XP_001965956.1| GF11824 [Drosophila ananassae]
gi|194900932|ref|XP_001980009.1| GG20814 [Drosophila erecta]
gi|195157158|ref|XP_002019463.1| GL12210 [Drosophila persimilis]
gi|195444928|ref|XP_002070093.1| GK11212 [Drosophila willistoni]
gi|195501415|ref|XP_002097786.1| GE26402 [Drosophila yakuba]
gi|198477563|ref|XP_002136553.1| GA27654 [Drosophila pseudoobscura pseudoobscura]
gi|54639475|gb|EAL28877.1| GA16051 [Drosophila pseudoobscura pseudoobscura]
gi|190619799|gb|EDV35323.1| GF11824 [Drosophila ananassae]
gi|190651712|gb|EDV48967.1| GG20814 [Drosophila erecta]
gi|194116054|gb|EDW38097.1| GL12210 [Drosophila persimilis]
gi|194166178|gb|EDW81079.1| GK11212 [Drosophila willistoni]
gi|194183887|gb|EDW97498.1| GE26402 [Drosophila yakuba]
gi|198142841|gb|EDY71554.1| GA27654 [Drosophila pseudoobscura pseudoobscura]
Length = 173
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ ++ IG+G+I+ G GFV +PV+ + IVFRPF+GE+L A V +NK+
Sbjct: 40 GKYGFVIAVTTIDQIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFA 99
Query: 57 -------------IPDDMEL-QTGDLPNYTTSDGSVCIS 81
IP DM+ G+ P Y + D V IS
Sbjct: 100 EIGPLSCFISHHSIPADMQFCPNGNPPCYKSKDEDVVIS 138
>gi|307183360|gb|EFN70218.1| DNA-directed RNA polymerase II subunit RPB7 [Camponotus floridanus]
Length = 249
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 17/80 (21%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFVVA+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 116 GKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFA 175
Query: 57 -------------IPDDMEL 63
IP+DM+
Sbjct: 176 EIGPLSCFISHHSIPEDMQF 195
>gi|260787962|ref|XP_002589020.1| hypothetical protein BRAFLDRAFT_124918 [Branchiostoma floridae]
gi|229274193|gb|EEN45031.1| hypothetical protein BRAFLDRAFT_124918 [Branchiostoma floridae]
Length = 172
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGVGAIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP DME + P Y T+D V I
Sbjct: 100 EVGPMSCFVSRHSIPSDMEFDPNSNPPCYKTADEDVVIQ 138
>gi|242005679|ref|XP_002423690.1| mixed-lineage leukemia protein, mll, putative [Pediculus humanus
corporis]
gi|212506866|gb|EEB10952.1| mixed-lineage leukemia protein, mll, putative [Pediculus humanus
corporis]
Length = 3311
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG GLI G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 38 GKYGFVIAVTLIDNIGAGLILPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFA 97
Query: 57 -------------IPDDMELQTG-DLPNYTTSDGSVCI 80
IP DM+ + P Y + D V I
Sbjct: 98 EIGPLSCFISHHSIPADMQFCPNFNPPCYKSKDEDVVI 135
>gi|156378584|ref|XP_001631222.1| predicted protein [Nematostella vectensis]
gi|156218258|gb|EDO39159.1| predicted protein [Nematostella vectensis]
Length = 172
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 18/96 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GF++A+ +++IG G I+ G GFV +PV+ + IVFRPF+GE+L A +T VNKL
Sbjct: 40 GKYGFIIAVTTIDNIGVGHIQPGRGFVVYPVKYKAIVFRPFKGEVLDAVITQVNKLGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSV 78
IP DME + P Y T D V
Sbjct: 100 EIGPLSCFVSRHSIPPDMEFDPNSNPPCYKTKDEDV 135
>gi|195036122|ref|XP_001989520.1| GH18755 [Drosophila grimshawi]
gi|195111302|ref|XP_002000218.1| GI22645 [Drosophila mojavensis]
gi|195389416|ref|XP_002053373.1| GJ23373 [Drosophila virilis]
gi|193893716|gb|EDV92582.1| GH18755 [Drosophila grimshawi]
gi|193916812|gb|EDW15679.1| GI22645 [Drosophila mojavensis]
gi|194151459|gb|EDW66893.1| GJ23373 [Drosophila virilis]
Length = 173
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ ++ IG+G+I+ G GFV +PV+ + IVFRPF+GE+L A V +NK+
Sbjct: 40 GKYGFVIAVTTIDLIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFA 99
Query: 57 -------------IPDDMEL-QTGDLPNYTTSDGSVCIS 81
IP DM+ G+ P Y + D V IS
Sbjct: 100 EIGPLSCFISHHSIPADMQFCPNGNPPCYKSKDEDVVIS 138
>gi|444711067|gb|ELW52021.1| TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L [Tupaia chinensis]
Length = 820
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 18/93 (19%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAIVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSD 75
IP +ME + P Y T D
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMD 132
>gi|209733032|gb|ACI67385.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
Length = 172
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T+D + I
Sbjct: 100 EIGSMSCFISRHSIPSEMEFDPNSNPPCYKTTDEDIVIQ 138
>gi|332024088|gb|EGI64305.1| DNA-directed RNA polymerase II subunit RPB7 [Acromyrmex echinatior]
Length = 267
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 17/80 (21%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFVVA+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 126 GKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFA 185
Query: 57 -------------IPDDMEL 63
IP+DM+
Sbjct: 186 EIGPLSCFISHHSIPEDMQF 205
>gi|259089327|ref|NP_001158701.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Oncorhynchus
mykiss]
gi|209737754|gb|ACI69746.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
gi|225705948|gb|ACO08820.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Oncorhynchus
mykiss]
gi|225717052|gb|ACO14372.1| DNA-directed RNA polymerase II subunit RPB7 [Esox lucius]
gi|303664575|gb|ADM16147.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
Length = 172
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T+D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTTDEDIVIQ 138
>gi|387018224|gb|AFJ51230.1| DNA-directed RNA polymerase II subunit RPB7-like [Crotalus
adamanteus]
Length = 172
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAIVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQTG-DLPNYTTSDGSVCIS 81
IP +ME T + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEYDTNSNPPCYKTVDEDIVIQ 138
>gi|312378597|gb|EFR25129.1| hypothetical protein AND_09806 [Anopheles darlingi]
Length = 983
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ ++ IG+G I+ G GFV +PV+ + IVFRPF+GE+L A V VNK+
Sbjct: 850 GKYGFVIAVTTIDDIGSGTIQPGQGFVVYPVKYKAIVFRPFKGEVLDATVKQVNKVGMFA 909
Query: 57 -------------IPDDMEL-QTGDLPNYTTSDGSVCIS 81
IP DM+ G P Y +G I+
Sbjct: 910 EIGPLSCFISHHSIPADMQFCPNGAPPCYRAMNGESVIA 948
>gi|357630895|gb|EHJ78714.1| putative mixed-lineage leukemia protein, mll [Danaus plexippus]
Length = 173
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 45/56 (80%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ ++SIG GLI+ G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKV 95
>gi|221102923|ref|XP_002157143.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Hydra
magnipapillata]
Length = 172
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G I+ GFV +PV+ + IVFRPF+GE+L A VT VNK
Sbjct: 40 GKYGFVIAVTTIDNIGAGYIQPSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKAGLFT 99
Query: 57 -------------IPDDMELQTGDLPN-YTTSDGSVCIS 81
IP DME P Y T D V I
Sbjct: 100 EVGPLSCFISRHSIPTDMEFDPNSSPPCYKTHDEEVVIQ 138
>gi|213972531|ref|NP_001135427.1| DNA-directed RNA polymerase II subunit RPB7 [Ovis aries]
gi|212378988|gb|ACJ24821.1| DNA-directed RNA polymerase II polypeptide G [Ovis aries]
Length = 172
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKSKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 138
>gi|41054447|ref|NP_955963.1| DNA-directed RNA polymerase II subunit RPB7 [Danio rerio]
gi|62858849|ref|NP_001017065.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus
(Silurana) tropicalis]
gi|147900153|ref|NP_001091291.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus laevis]
gi|50401534|sp|Q7ZW41.1|RPB7_DANRE RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|28278826|gb|AAH45299.1| Polymerase (RNA) II (DNA directed) polypeptide G-like [Danio rerio]
gi|89266814|emb|CAJ83494.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus
(Silurana) tropicalis]
gi|123959696|gb|AAI28969.1| LOC100037112 protein [Xenopus laevis]
gi|134025964|gb|AAI35153.1| hypothetical protein LOC549819 [Xenopus (Silurana) tropicalis]
gi|182890184|gb|AAI64883.1| Polr2gl protein [Danio rerio]
Length = 172
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D V I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQ 138
>gi|443718113|gb|ELU08859.1| hypothetical protein CAPTEDRAFT_177843 [Capitella teleta]
Length = 172
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGIIQPGRGFVLYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP + E + P Y T D + I
Sbjct: 100 EIGPLSCFISRHSIPSEYEFDPNNNPPCYKTKDEDILIQ 138
>gi|431910359|gb|ELK13432.1| DNA-directed RNA polymerase II subunit RPB7 [Pteropus alecto]
Length = 223
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIK 138
>gi|268565845|ref|XP_002639564.1| C. briggsae CBR-RPB-7 protein [Caenorhabditis briggsae]
Length = 197
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG GLI+ G GFV +PVR + IVFRPF+G+++ VT VNK+
Sbjct: 63 GKYGFVIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFC 122
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCI 80
IP DME + P Y T+D + I
Sbjct: 123 DIGPLSCFISRHCIPPDMEFDPNSEKPCYKTNDEATVI 160
>gi|149062301|gb|EDM12724.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Rattus norvegicus]
Length = 159
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 138
>gi|72013666|ref|XP_780458.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Strongylocentrotus purpuratus]
gi|115911735|ref|XP_001175504.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Strongylocentrotus purpuratus]
Length = 172
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGMIQPSRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQTGDLPN-YTTSDGSVCIS 81
IP DME P Y T D + I
Sbjct: 100 DIGPLSCFISRHSIPADMEFDPNSSPPCYKTKDEDIVIQ 138
>gi|391343700|ref|XP_003746144.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Metaseiulus occidentalis]
Length = 174
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ ++SIG GLI+ GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVIAVTAIDSIGDGLIQPNRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGIFT 99
Query: 57 -------------IPDDMELQTGDLPNYTTSDGSVCIS 81
IP DM+ P + CI
Sbjct: 100 EIGPLSCFISRHSIPPDMQFDPNSTPPCYKNAEDDCIQ 137
>gi|291222602|ref|XP_002731309.1| PREDICTED: DNA directed RNA polymerase II polypeptide G-like
[Saccoglossus kowalevskii]
Length = 172
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G I+ GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGRIQPSRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP DME + P Y T D V I
Sbjct: 100 EIGPLSCFVSRHSIPSDMEFDPNSNPPCYKTQDEDVVIQ 138
>gi|148701426|gb|EDL33373.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Mus musculus]
Length = 159
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 138
>gi|355566390|gb|EHH22769.1| DNA-directed RNA polymerase II subunit RPB7, partial [Macaca
mulatta]
gi|355752017|gb|EHH56137.1| DNA-directed RNA polymerase II subunit RPB7, partial [Macaca
fascicularis]
Length = 169
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 138
>gi|4505947|ref|NP_002687.1| DNA-directed RNA polymerase II subunit RPB7 [Homo sapiens]
gi|13385826|ref|NP_080605.1| DNA-directed RNA polymerase II subunit RPB7 [Mus musculus]
gi|16758826|ref|NP_446400.1| DNA-directed RNA polymerase II subunit RPB7 [Rattus norvegicus]
gi|62752835|ref|NP_001015633.1| DNA-directed RNA polymerase II subunit RPB7 [Bos taurus]
gi|388452830|ref|NP_001253453.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|57099729|ref|XP_533260.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Canis lupus
familiaris]
gi|291409522|ref|XP_002721043.1| PREDICTED: DNA directed RNA polymerase II polypeptide G
[Oryctolagus cuniculus]
gi|296218536|ref|XP_002755481.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Callithrix
jacchus]
gi|301779986|ref|XP_002925403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Ailuropoda melanoleuca]
gi|332836746|ref|XP_001142605.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Pan
troglodytes]
gi|335281668|ref|XP_003353863.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Sus
scrofa]
gi|338712501|ref|XP_001495008.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Equus
caballus]
gi|354504568|ref|XP_003514346.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cricetulus griseus]
gi|397516683|ref|XP_003828553.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Pan
paniscus]
gi|402893073|ref|XP_003909728.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 1
[Papio anubis]
gi|402893075|ref|XP_003909729.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 2
[Papio anubis]
gi|403255132|ref|XP_003920301.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 1
[Saimiri boliviensis boliviensis]
gi|403255134|ref|XP_003920302.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 2
[Saimiri boliviensis boliviensis]
gi|410974282|ref|XP_003993576.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Felis
catus]
gi|426368868|ref|XP_004051423.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Gorilla
gorilla gorilla]
gi|50403597|sp|P62489.1|RPB7_RAT RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|50403601|sp|P62487.1|RPB7_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G; AltName:
Full=RNA polymerase II 19 kDa subunit; Short=RPB19
gi|50403602|sp|P62488.1|RPB7_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|73917870|sp|Q5E9B8.1|RPB7_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|83754529|pdb|2C35|B Chain B, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754531|pdb|2C35|D Chain D, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754533|pdb|2C35|F Chain F, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754535|pdb|2C35|H Chain H, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|929921|gb|AAA86500.1| RNA polymerase II subunit hsRPB7 [Homo sapiens]
gi|1360132|emb|CAA96468.1| RNA polymerase II RPB7 subunit-like protein [Rattus norvegicus]
gi|1924974|gb|AAB96827.1| RNA polymerase II seventh subunit [Homo sapiens]
gi|12846312|dbj|BAB27119.1| unnamed protein product [Mus musculus]
gi|12847875|dbj|BAB27743.1| unnamed protein product [Mus musculus]
gi|12850308|dbj|BAB28670.1| unnamed protein product [Mus musculus]
gi|12856725|dbj|BAB30760.1| unnamed protein product [Mus musculus]
gi|33243991|gb|AAH55278.1| Polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
gi|37514866|gb|AAH05580.3| Polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
gi|38014576|gb|AAH60595.1| Polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
gi|38051973|gb|AAH60550.1| Polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
gi|59858369|gb|AAX09019.1| DNA directed RNA polymerase II polypeptide G [Bos taurus]
gi|85566845|gb|AAI12163.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
gi|85567601|gb|AAI12165.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
gi|119594498|gb|EAW74092.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Homo sapiens]
gi|148701424|gb|EDL33371.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_a
[Mus musculus]
gi|149062299|gb|EDM12722.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_a
[Rattus norvegicus]
gi|189053261|dbj|BAG35067.1| unnamed protein product [Homo sapiens]
gi|208967084|dbj|BAG73556.1| polymerase (RNA) II (DNA directed) polypeptide G [synthetic
construct]
gi|296471655|tpg|DAA13770.1| TPA: DNA-directed RNA polymerase II subunit RPB7 [Bos taurus]
gi|380785401|gb|AFE64576.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|383414681|gb|AFH30554.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|384947774|gb|AFI37492.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|410267352|gb|JAA21642.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|410294946|gb|JAA26073.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|410351171|gb|JAA42189.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|1098305|prf||2115374A RNA polymerase II
Length = 172
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 138
>gi|432878328|ref|XP_004073303.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Oryzias latipes]
Length = 171
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQ 138
>gi|149641280|ref|XP_001511485.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Ornithorhynchus anatinus]
gi|348514213|ref|XP_003444635.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Oreochromis niloticus]
gi|395544392|ref|XP_003774094.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Sarcophilus
harrisii]
gi|410913687|ref|XP_003970320.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Takifugu rubripes]
gi|229367270|gb|ACQ58615.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQ 138
>gi|229365728|gb|ACQ57844.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EVGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQ 138
>gi|327289535|ref|XP_003229480.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Anolis
carolinensis]
Length = 202
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 70 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 129
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D V I
Sbjct: 130 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTIDEDVVIQ 168
>gi|340373532|ref|XP_003385295.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Amphimedon queenslandica]
Length = 172
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G+HGFV+A+ +++IG G+++ G G +PV+ + IVFRPF+GE+L A V VNKL
Sbjct: 40 GKHGFVIAVTTIDNIGLGMLQTGRGVALYPVKYKAIVFRPFKGEVLDALVIQVNKLGLFT 99
Query: 57 -------------IPDDMELQTGDLPN-YTTSDGSVCIS 81
IP +ME P+ Y TS+ V I
Sbjct: 100 QIGPLTCFISRHSIPPEMEFDPNSTPHCYRTSESDVLIQ 138
>gi|281352567|gb|EFB28151.1| hypothetical protein PANDA_014914 [Ailuropoda melanoleuca]
Length = 165
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 36 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 95
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 96 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 134
>gi|308473109|ref|XP_003098780.1| CRE-RPB-7 protein [Caenorhabditis remanei]
gi|308268076|gb|EFP12029.1| CRE-RPB-7 protein [Caenorhabditis remanei]
Length = 174
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG GLI+ G GFV +PVR + IVFRPF+G+++ VT VNK+
Sbjct: 40 GKYGFVIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFC 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCI 80
IP DME + P Y T+D + I
Sbjct: 100 DIGPLSCFISRHCIPPDMEFDPNSEKPCYKTNDEATII 137
>gi|440898152|gb|ELR49707.1| DNA-directed RNA polymerase II subunit RPB7, partial [Bos grunniens
mutus]
Length = 163
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 36 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 95
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCI 80
IP +ME + P Y T D + I
Sbjct: 96 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 133
>gi|417408664|gb|JAA50874.1| Putative dna-directed rna polymerase ii subunit rpb7-like protein,
partial [Desmodus rotundus]
Length = 209
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 77 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 136
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 137 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 175
>gi|355712735|gb|AES04448.1| polymerase II polypeptide G [Mustela putorius furo]
Length = 183
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 52 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 111
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 112 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 150
>gi|344295631|ref|XP_003419515.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Loxodonta africana]
Length = 232
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQ 138
>gi|90081264|dbj|BAE90112.1| unnamed protein product [Macaca fascicularis]
Length = 221
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 89 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 148
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 149 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 187
>gi|334332599|ref|XP_001362540.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Monodelphis domestica]
Length = 201
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQ 138
>gi|328789158|ref|XP_624976.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Apis
mellifera]
gi|380030530|ref|XP_003698899.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Apis
florea]
Length = 173
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFVVA+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFA 99
Query: 57 -------------IPDDMELQTG-DLPNYTTSDGSVCIS 81
IP DM+ + P Y T + V I
Sbjct: 100 EIGPLSCFISHHSIPADMQFCPNINPPCYKTKEEDVIIQ 138
>gi|225709388|gb|ACO10540.1| DNA-directed RNA polymerase II subunit RPB7 [Caligus rogercresseyi]
Length = 172
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGIIQPGNGFVIYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP DM + P Y T++ V I
Sbjct: 100 EIGPPSCFISRHSIPADMTFDPNSNPPCYKTNNEEVTIH 138
>gi|170592835|ref|XP_001901170.1| polymerase [Brugia malayi]
gi|158591237|gb|EDP29850.1| polymerase, putative [Brugia malayi]
Length = 171
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 15/96 (15%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV------- 53
G++GFVVA+ +++IG GLI+ G GFV +PV+ + IVFRPF+G+++ A V V
Sbjct: 40 GKYGFVVAVTTIDNIGAGLIQPGRGFVLYPVKYKAIVFRPFKGQVVDAVVNQVGLFCDIG 99
Query: 54 -------NKLIPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP DME + + P Y T+D SV I
Sbjct: 100 PLSCFVSRHCIPPDMEFEPNSNPPCYKTADESVVIK 135
>gi|229367494|gb|ACQ58727.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGGGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQ 138
>gi|226372376|gb|ACO51813.1| DNA-directed RNA polymerase II subunit RPB7 [Rana catesbeiana]
Length = 172
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A V+ VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVSQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D V I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQ 138
>gi|17510349|ref|NP_491093.1| Protein RPB-7 [Caenorhabditis elegans]
gi|351064549|emb|CCD72992.1| Protein RPB-7 [Caenorhabditis elegans]
Length = 197
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG GLI+ G GFV +PVR + IVFRPF+G+++ VT VNK+
Sbjct: 63 GKYGFVIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFC 122
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCI 80
IP DME + P Y T+D + I
Sbjct: 123 DIGPLSCFISRHCIPPDMEFDPNSEKPCYKTNDEANVI 160
>gi|322791340|gb|EFZ15830.1| hypothetical protein SINV_10601 [Solenopsis invicta]
Length = 169
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 45/56 (80%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFVVA+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 36 GKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKV 91
>gi|307201488|gb|EFN81256.1| DNA-directed RNA polymerase II subunit RPB7 [Harpegnathos
saltator]
Length = 179
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 45/56 (80%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFVVA+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVVAVTTIDNIGAGIIQPGQGFVIYPVKYKAIVFRPFKGEVLDAIVTQVNKV 95
>gi|340711605|ref|XP_003394365.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Bombus terrestris]
gi|350416078|ref|XP_003490834.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Bombus impatiens]
Length = 173
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 45/56 (80%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFVVA+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKV 95
>gi|383865506|ref|XP_003708214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Megachile rotundata]
Length = 173
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 45/56 (80%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFVVA+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKV 95
>gi|224110118|ref|XP_002198109.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like,
partial [Taeniopygia guttata]
Length = 133
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 18/93 (19%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ ++++G G+I+ G GFV +PVR + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNVGAGVIQPGRGFVLYPVRYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSD 75
IP +ME + P Y T D
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVD 132
>gi|341885978|gb|EGT41913.1| CBN-RPB-7 protein [Caenorhabditis brenneri]
gi|341897170|gb|EGT53105.1| hypothetical protein CAEBREN_28990 [Caenorhabditis brenneri]
Length = 174
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG GLI+ G GFV +PVR + IVFRPF+G+++ V+ VNK+
Sbjct: 40 GKYGFVIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVSQVNKVGIFC 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCI 80
IP DME + P Y T+D + I
Sbjct: 100 DIGPLSCFISRHCIPPDMEFDPNSEKPCYKTNDEATVI 137
>gi|395852612|ref|XP_003798829.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Otolemur
garnettii]
Length = 170
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 46/58 (79%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIP 58
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+ P
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVRP 97
>gi|91082423|ref|XP_970313.1| PREDICTED: similar to GA16051-PA [Tribolium castaneum]
gi|270007516|gb|EFA03964.1| hypothetical protein TcasGA2_TC014109 [Tribolium castaneum]
Length = 173
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ ++SIG GLI G G+V +PV+ + IVFRPF+GE+L A V VNK+
Sbjct: 40 GKYGFVIAVTTIDSIGAGLILPGQGYVVYPVKYKAIVFRPFKGEVLDAVVRQVNKVGMFA 99
Query: 57 -------------IPDDMELQTGDLPN-YTTSDGSVCIS 81
IP +ME P Y T D V I
Sbjct: 100 EIGPLSCFISHHSIPAEMEFCPNVNPQCYKTKDEDVVIH 138
>gi|219879810|ref|NP_001137380.1| RNA polymerase II subunit 7 [Nasonia vitripennis]
Length = 173
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFVVA+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE+L VT VNK+
Sbjct: 40 GKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDGIVTQVNKVGMFA 99
Query: 57 -------------IPDDMEL-QTGDLPNYTTSDGSVCIS 81
IP DM+ + P Y + D V I
Sbjct: 100 EIGPLSCFISHHSIPADMQFCPNVNPPCYKSKDEDVVIQ 138
>gi|332249762|ref|XP_003274027.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Nomascus
leucogenys]
Length = 134
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 18/98 (18%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL----- 56
++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 3 KYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTE 62
Query: 57 ------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 63 IGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 100
>gi|307105977|gb|EFN54224.1| hypothetical protein CHLNCDRAFT_36106 [Chlorella variabilis]
Length = 174
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 17/97 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GR+GF++++MGV G GLIR+G G F ++ +CI +PF+G+++ VT VNK
Sbjct: 40 GRYGFILSVMGVLDTGKGLIREGSGSAVFNLKYKCICMKPFKGQVMDVVVTSVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCI 80
LIP+ E T P Y T+DG I
Sbjct: 100 EAGPLQVFVSNHLIPEGFEFNTAHEPCYQTADGEQKI 136
>gi|339522289|gb|AEJ84309.1| DNA-directed RNA polymerase II subunit G [Capra hircus]
Length = 172
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 45/56 (80%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKV 95
>gi|73586691|gb|AAI03081.1| Polymerase (RNA) II (DNA directed) polypeptide G [Bos taurus]
Length = 172
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++ FV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYCFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 138
>gi|58394731|ref|XP_320916.2| AGAP002121-PA [Anopheles gambiae str. PEST]
gi|55233251|gb|EAA00949.2| AGAP002121-PA [Anopheles gambiae str. PEST]
Length = 173
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ ++ IG+G I+ G GFV +PV+ + IVFRPF+GE+L A V VNK+
Sbjct: 40 GKYGFVIAVTTIDDIGSGTIQPGQGFVVYPVKYKAIVFRPFKGEVLDATVKQVNKVGMFA 99
Query: 57 -------------IPDDMEL-QTGDLPNYTTSDGSVCIS 81
IP DM+ G P Y +G I+
Sbjct: 100 EIGPLSCFISHHSIPADMQFCPNGAPPCYRAINGESVIA 138
>gi|405954685|gb|EKC22056.1| DNA-directed RNA polymerase II subunit RPB7, partial [Crassostrea
gigas]
Length = 167
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ +++IG G I+ GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 36 GKYGFVIAVTTIDNIGAGTIQPSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKV 91
>gi|440790049|gb|ELR11338.1| DNAdirected RNA polymerase II subunit RPB7, putative, partial
[Acanthamoeba castellanii str. Neff]
Length = 153
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GR+GF++ + + ++G G I DG G VTFPV + IVFRPF+GE++ A VT VNK
Sbjct: 38 GRYGFIIMVTSIATVGLGKINDGTGMVTFPVAYRAIVFRPFKGEVVDAVVTQVNKMGFMA 97
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP DM + + + D SV IS
Sbjct: 98 EVGPLQVFVSKHLIPTDMTFDPTE-HCFASEDESVKIS 134
>gi|405952867|gb|EKC20626.1| DNA-directed RNA polymerase II subunit RPB7 [Crassostrea gigas]
Length = 191
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ +++IG G I+ GFV +PV+ + IVFRPF+GE+L A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGTIQPSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKV 95
>gi|332374930|gb|AEE62606.1| unknown [Dendroctonus ponderosae]
Length = 173
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ ++ IG GLI G GFV +PV+ + IVFRPF+GE+L A V VNK+
Sbjct: 40 GKYGFVIAVTTIDHIGAGLILPGQGFVVYPVKYKAIVFRPFKGEVLDAVVRQVNKV 95
>gi|402585420|gb|EJW79360.1| DNA-directed RNA polymerase II subunit RPB7 [Wuchereria
bancrofti]
Length = 107
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 44/56 (78%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFVVA+ +++IG GLI+ G GFV +PV+ + IVFRPF+G+++ A V VNK+
Sbjct: 40 GKYGFVVAVTTIDNIGAGLIQPGRGFVLYPVKYKAIVFRPFKGQVVDAVVNQVNKV 95
>gi|159467891|ref|XP_001692125.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158278852|gb|EDP04615.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 176
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIR-DGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK---- 55
G++G+VVA+ V+ IG G IR D G+ TF V CIV RP++GE+L A VT VNK
Sbjct: 40 GKYGYVVAVTKVDDIGRGRIRQDQSGYATFEVSYGCIVCRPYKGEVLDAVVTSVNKMGFF 99
Query: 56 -------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPD+ E T D ++ + D + I
Sbjct: 100 AQAGPLQLFVTQHLIPDEFEFDTSDDNSWISMDQTTRIQ 138
>gi|384486857|gb|EIE79037.1| hypothetical protein RO3G_03742 [Rhizopus delemar RA 99-880]
Length = 134
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDD 60
GR+G+VV ++ V + G + G G F V Q I+F+PF+GE+L VT VNKLIP++
Sbjct: 19 GRYGYVVTVVSVSRLEKGKVLPGSGLAEFKVSYQAILFKPFKGEVLDGLVTTVNKLIPNE 78
Query: 61 MELQ-TGDLPNYTTSD 75
+ G+ P Y++ D
Sbjct: 79 FKFDVNGNPPCYSSED 94
>gi|313230246|emb|CBY07950.1| unnamed protein product [Oikopleura dioica]
Length = 172
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G HGFV+ + + SIG G I G GF FP++ IVFRPF+GE++ VT VNK+
Sbjct: 40 GEHGFVIGVTNIHSIGDGDILAGRGFCLFPIKYAAIVFRPFKGEVVDGVVTQVNKVGLMV 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP DME + P Y T D I
Sbjct: 100 DVGPMACFISKHSIPSDMEFDPDSNPPCYKTKDEDTAIK 138
>gi|240848959|ref|NP_001155524.1| DNA-directed RNA polymerase II subunit RPB7 [Acyrthosiphon pisum]
gi|239792200|dbj|BAH72468.1| ACYPI003367 [Acyrthosiphon pisum]
Length = 172
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GFV+A+ +++IG GLI G GFV + V+ + IVFRPF+GE+L A VT +NK+
Sbjct: 40 GKYGFVIAVTHIDNIGCGLILPGQGFVVYTVKYKAIVFRPFKGEVLEAVVTQLNKV 95
>gi|384247619|gb|EIE21105.1| RNA polymerase II subunit B7 [Coccomyxa subellipsoidea C-169]
Length = 176
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 17/95 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
G++GF++ + G+ +G G IR+G G F V+ C+V RPF+GE+L V+ VNK
Sbjct: 40 GKYGFIICVTGMGHVGKGSIREGSGTALFKVQYSCVVLRPFKGEVLDCVVSSVNKVGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSV 78
LIP+D E P + ++D +V
Sbjct: 100 DAGPLQLFVSNHLIPEDFEFNATGEPAFVSTDEAV 134
>gi|281204945|gb|EFA79139.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 1025
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 20/100 (20%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GR+GF++ I V+ + G + + G+V PV+ + I+F+PF+GE+L A VT V
Sbjct: 785 GRYGFIITITSVDFVSRGKVLESTGYVVLPVKYRAIIFKPFKGEVLDAVVTKVTNLGFFA 844
Query: 56 ------------LIPDDMEL--QTGDLPNYTTSDGSVCIS 81
LIP DM+ Q+ + P + + DGS IS
Sbjct: 845 EAGPLTIFVSTHLIPTDMQFDAQSAN-PCFISDDGSSKIS 883
>gi|412992538|emb|CCO18518.1| predicted protein [Bathycoccus prasinos]
Length = 149
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 1 GRHGFVVAIMGVESIGTGLIRD-GIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK---- 55
GR+GF+V I +E++ G+I D G F V C+ +RPF+ E+L A VT VNK
Sbjct: 7 GRYGFIVCITHIENVSEGIITDDGTARAKFAVEYDCVAYRPFKNEVLDAVVTQVNKFGFF 66
Query: 56 -------------LIPDDMELQTGDLPNYTTSDGSVCI 80
L+PDD++ T D Y + DG + I
Sbjct: 67 AEAGPLQLFVSNSLVPDDVKYVT-DENCYKSDDGQITI 103
>gi|297688430|ref|XP_002821689.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB7 [Pongo abelii]
Length = 229
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 19/100 (19%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGF-VTFPVRCQCIVFRPFRGEILGAAVTMVNKL--- 56
G++GFV+A+ +++IG G G G V +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 96 GKYGFVIAVTTIDNIGAGGSSQGRGLLVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLF 155
Query: 57 --------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 156 TEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 195
>gi|255073033|ref|XP_002500191.1| predicted protein [Micromonas sp. RCC299]
gi|226515453|gb|ACO61449.1| predicted protein [Micromonas sp. RCC299]
Length = 185
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 19/100 (19%)
Query: 1 GRHGFVVAIMGVESIGTGLI-RDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK---- 55
G+HG++V + +I G++ DG F V I FRPF+G++L A VT VNK
Sbjct: 40 GKHGYIVMVTDFTNISEGMVTDDGTARAKFRVEFDAIAFRPFKGQVLDAVVTEVNKFGFF 99
Query: 56 -------------LIPDDMELQTGDLPN-YTTSDGSVCIS 81
LI DDM+ ++ D N Y +SD SV +
Sbjct: 100 AEAGPMNLFVSNQLISDDMKFESIDNANRYVSSDKSVSVQ 139
>gi|196007472|ref|XP_002113602.1| hypothetical protein TRIADDRAFT_50378 [Trichoplax adhaerens]
gi|190584006|gb|EDV24076.1| hypothetical protein TRIADDRAFT_50378 [Trichoplax adhaerens]
Length = 172
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G+HGFV+A+ ++ +G G I GFV +PVR + IVF+PF GE++ VT +NK+
Sbjct: 40 GKHGFVIAVTIIDKVGVGKILPNSGFVVYPVRYKAIVFKPFPGEVVDGIVTQLNKVGLFV 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP DM G+ P + T D + +
Sbjct: 100 EVGPLTCFISKYSIPRDMFFDPNGNPPCFRTEDEDMIVQ 138
>gi|339252426|ref|XP_003371436.1| DNA-directed RNA polymerase II subunit RPB7 [Trichinella
spiralis]
gi|316968324|gb|EFV52617.1| DNA-directed RNA polymerase II subunit RPB7 [Trichinella
spiralis]
Length = 172
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 40/56 (71%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GF++ + G+ SIG GL++ G GFV FP++ Q +V+RP + E++ V V+KL
Sbjct: 40 GKYGFIITVTGILSIGAGLVQSGCGFVRFPIKYQAVVYRPIKNEVVEGRVENVSKL 95
>gi|301099953|ref|XP_002899067.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262104379|gb|EEY62431.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 177
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 1 GRHGFVVAIMGV--ESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++G+V+ + V E IG G+I+D GFV F +R + I+FRPF+ ++L A VT+VN+L
Sbjct: 40 GKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQL 97
>gi|226468572|emb|CAX69963.1| polymerase (RNA) II (DNA directed) polypeptide G [Schistosoma
japonicum]
Length = 175
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 40/56 (71%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GF++A+ +E IG G+I+ GFV + + + IV+RPF+GE++ A VT V K+
Sbjct: 40 GKYGFIIAVTNIEHIGAGIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKV 95
>gi|302837432|ref|XP_002950275.1| hypothetical protein VOLCADRAFT_74564 [Volvox carteri f.
nagariensis]
gi|300264280|gb|EFJ48476.1| hypothetical protein VOLCADRAFT_74564 [Volvox carteri f.
nagariensis]
Length = 176
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIR-DGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK---- 55
G++G+VVA+ V+ IG G IR D GF TF V CIV RP++ E+L A VT VNK
Sbjct: 40 GKYGYVVAVTKVDDIGRGRIRQDQSGFATFDVTYGCIVCRPYKKEVLDAVVTSVNKMGFF 99
Query: 56 -------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP++ E + ++ + D + I
Sbjct: 100 AQAGPLQLFVTQHLIPEEFEFDSSGDSSWVSVDQTTHIQ 138
>gi|256072766|ref|XP_002572705.1| DNA-directed rna polymerase II 19 kD polypeptide rpb7 [Schistosoma
mansoni]
gi|353231053|emb|CCD77471.1| putative dna-directed rna polymerase II 19 kD polypeptide rpb7
[Schistosoma mansoni]
Length = 194
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 40/56 (71%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GF++A+ +E IG G+I+ GFV + + + IV+RPF+GE++ A VT V K+
Sbjct: 63 GKYGFIIAVTNIEHIGAGIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKV 118
>gi|56757637|gb|AAW26970.1| SJCHGC02592 protein [Schistosoma japonicum]
Length = 175
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 40/56 (71%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GF++A+ +E IG G+I+ GFV + + + IV+RPF+GE++ A VT V K+
Sbjct: 40 GKYGFIIAVTNIEHIGAGIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKV 95
>gi|308808622|ref|XP_003081621.1| DNA-directed RNA polymerase subunit E' (ISS) [Ostreococcus tauri]
gi|116060086|emb|CAL56145.1| DNA-directed RNA polymerase subunit E' (ISS) [Ostreococcus tauri]
Length = 1353
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLI-RDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK---- 55
GR+GF+V + V+ + G++ DG F V+ C+VFRPF+GE++ A VT VNK
Sbjct: 1215 GRYGFIVMVTRVDDVSEGVVVDDGTARAKFHVKYDCVVFRPFKGEVVDAVVTQVNKFGFF 1274
Query: 56 -------------LIPDDMELQTGDLPNYTTSDGSVCI 80
LI +DM+ + Y + D + I
Sbjct: 1275 AEAGPLQLFVSNALITEDMQFDSSGENCYVSDDQQIRI 1312
>gi|348674301|gb|EGZ14120.1| hypothetical protein PHYSODRAFT_303395 [Phytophthora sojae]
Length = 168
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 1 GRHGFVVAIMGV--ESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++G+V+ + V E IG G+I+D GFV F +R + I+FRPF+ ++L A VT+VN+L
Sbjct: 40 GKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQL 97
>gi|325185644|emb|CCA20126.1| DNAdirected RNA polymerase II 19 kDa polypeptide pu [Albugo
laibachii Nc14]
Length = 179
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 1 GRHGFVVAIMGV--ESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++G+V+ + V E IG G+I+D G+V F +R + I+FRPF+ E+L A V++VN+L
Sbjct: 40 GKYGYVITVTEVRDEDIGKGVIQDNSGYVCFNIRYRAILFRPFKNEVLDAVVSVVNQL 97
>gi|452819737|gb|EME26790.1| DNA-directed RNA polymerase II subunit G [Galdieria sulphuraria]
Length = 173
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 1 GRHGFVVAIMGV-ESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
GR GFVV+++ V + + G++R+G GF +P++ + +VFRPF+GE+L A VT V +
Sbjct: 41 GRFGFVVSVLEVLQPLPKGILREGFGFAVYPLKYKALVFRPFKGEVLDAVVTNVTR 96
>gi|66811466|ref|XP_639913.1| DNA-directed RNA polymerase II subunit 7 [Dictyostelium discoideum
AX4]
gi|74854071|sp|Q54P04.1|RPB7_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb7;
Short=RNA polymerase II subunit B7
gi|60466865|gb|EAL64909.1| DNA-directed RNA polymerase II subunit 7 [Dictyostelium discoideum
AX4]
Length = 172
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 20/100 (20%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV------- 53
GR+GF++ I V+ + G + + G+V F V+ + I+F+PF+GE+L A VT V
Sbjct: 40 GRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFA 99
Query: 54 ----------NKLIPDDM--ELQTGDLPNYTTSDGSVCIS 81
+LIP DM + Q+ +P + + DGS IS
Sbjct: 100 EAGPLSIFVSTQLIPSDMIFDAQSA-VPCFVSEDGSSKIS 138
>gi|56757344|gb|AAW26843.1| unknown [Schistosoma japonicum]
Length = 157
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 40/56 (71%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++GF++A+ +E IG G+I+ GFV + + + IV+RPF+GE++ A VT V K+
Sbjct: 40 GKYGFIIAVTNIEHIGAGIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKV 95
>gi|328871329|gb|EGG19700.1| RFT1 family protein [Dictyostelium fasciculatum]
Length = 662
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 20/96 (20%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GR+GF++ I V+ + G + + G+V F V+ + I+F+PF+GE++ A VT V
Sbjct: 531 GRYGFIITITSVDFVSKGKVLESSGYVVFQVKYKAIIFKPFKGEVMDAVVTKVTNLGFFA 590
Query: 56 ------------LIPDDMEL--QTGDLPNYTTSDGS 77
LIP DM+ Q+ + P + + DGS
Sbjct: 591 EAGPLTIFVSTHLIPPDMQFDAQSAN-PCFVSEDGS 625
>gi|290975310|ref|XP_002670386.1| predicted protein [Naegleria gruberi]
gi|284083944|gb|EFC37642.1| predicted protein [Naegleria gruberi]
Length = 161
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV------- 53
GR G++V++ + IG G I + G+ TFP+ + IVF+PF+GE+ A V V
Sbjct: 40 GRDGYIVSVTEITKIGQGKIGESSGYATFPINYKAIVFKPFKGEVCDAVVYKVTPVGFFA 99
Query: 54 ----------NKLIPDDMELQTGDL-PNYTTSDGSVCI 80
+ +PDDM+ P + + + VCI
Sbjct: 100 SVGPLNVFVSSHAVPDDMKYDGHHTPPRFISEEAQVCI 137
>gi|354469798|ref|XP_003497310.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cricetulus griseus]
Length = 172
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 40/56 (71%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++ FV+A+ +++IG G I+ G GF V+ + IVF+PF+GE++ A VT VNK+
Sbjct: 40 GKYDFVIAVTTIDNIGAGEIQPGQGFDLHTVKFKAIVFQPFKGEVVDAVVTQVNKV 95
>gi|145351559|ref|XP_001420140.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580373|gb|ABO98433.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 179
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRD-GIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK---- 55
GR+GF+V + + + G++ D G F ++ C+VFRPF+GE++ A VT VNK
Sbjct: 40 GRYGFIVMVTRLAEVSEGVVTDDGTARAKFHIKYDCVVFRPFKGEVMDAVVTQVNKFGFF 99
Query: 56 -------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LI +DM+ + Y + D + I
Sbjct: 100 AEAGPLQLFVSNALITEDMQFDSSGENCYVSDDQQIRIQ 138
>gi|402223848|gb|EJU03912.1| hypothetical protein DACRYDRAFT_49099, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 166
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G +G+++A++ V +G GL+ G G F + IVF+PF+GE+L + VT VNK+
Sbjct: 36 GEYGYIIAVLDVIDVGVGLVSVGAGHAEFTTTYRAIVFKPFKGEVLDSVVTSVNKM 91
>gi|162312460|ref|XP_001713072.1| DNA-directed RNA polymerase complex II subunit Rpb7
[Schizosaccharomyces pombe 972h-]
gi|3334317|sp|O14459.1|RPB7_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb7;
Short=RNA polymerase II subunit B7
gi|256599721|pdb|3H0G|G Chain G, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599733|pdb|3H0G|S Chain S, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2529241|dbj|BAA22802.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|2529245|dbj|BAA22804.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|2708528|gb|AAB92516.1| Rpb7 [Schizosaccharomyces pombe]
gi|4091821|gb|AAC99317.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|159883968|emb|CAA20136.2| DNA-directed RNA polymerase complex II subunit Rpb7
[Schizosaccharomyces pombe]
Length = 172
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 20/95 (21%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G++G+++ ++ +I G + G GF F V+ + +++RPFRGE++ A VT VNK
Sbjct: 41 GQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGF 100
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSD 75
L+P DM+ T + PNY+ D
Sbjct: 101 FANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGED 135
>gi|320166538|gb|EFW43437.1| RNA polymerase II core subunit [Capsaspora owczarzaki ATCC 30864]
Length = 176
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 1 GRHGFVVAIMGV--ESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G GF+VAI + E +G G + G G V++ V+ Q +VFRP +GE++ A VT+VNK+
Sbjct: 40 GERGFIVAITSLSEEHLGRGRLMAGKGLVSYHVQYQAVVFRPVKGEVMDAIVTVVNKM 97
>gi|71022503|ref|XP_761481.1| hypothetical protein UM05334.1 [Ustilago maydis 521]
gi|46101350|gb|EAK86583.1| hypothetical protein UM05334.1 [Ustilago maydis 521]
Length = 170
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+HG+++ ++G+ +G G + G G F Q +V +PF+GE++ A +T VNK+
Sbjct: 40 GKHGYIIKVIGLVDVGQGKVIPGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKM 95
>gi|343426584|emb|CBQ70113.1| probable DNA-directed RNA polymerase II chain Rpb7 [Sporisorium
reilianum SRZ2]
Length = 170
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+HG+++ ++G+ +G G + G G F Q +V +PF+GE++ A +T VNK+
Sbjct: 40 GKHGYIIKVIGMVDVGQGRVIPGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKM 95
>gi|388582123|gb|EIM22429.1| hypothetical protein WALSEDRAFT_60067 [Wallemia sebi CBS 633.66]
Length = 171
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
GR+G+++A++ + G+G + G+G F V+ IV++PF+GE++ V VNK+
Sbjct: 41 GRYGYIIAVLSISDPGSGTVLPGVGTAEFVVKYTAIVYKPFKGEVVDGQVASVNKM 96
>gi|168006688|ref|XP_001756041.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692971|gb|EDQ79326.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 190
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 31/51 (60%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV 53
HGF V + +E + G IR G G V F V +CIVFRP R EIL A VT V
Sbjct: 45 HGFHVTVTTLEDVSPGKIRSGTGSVIFWVTFKCIVFRPIRNEILEAEVTDV 95
>gi|328852061|gb|EGG01210.1| hypothetical protein MELLADRAFT_50187 [Melampsora larici-populina
98AG31]
Length = 172
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
GR G+++A++ + SI G I+ G G F ++ IV +PF+GE++ V VNK+
Sbjct: 40 GRFGYIIAVLSIRSISAGTIQPGTGMAEFVIKYSAIVLKPFKGEVVDGIVGQVNKM 95
>gi|213403826|ref|XP_002172685.1| DNA-directed RNA polymerase II subunit RPB7 [Schizosaccharomyces
japonicus yFS275]
gi|212000732|gb|EEB06392.1| DNA-directed RNA polymerase II subunit RPB7 [Schizosaccharomyces
japonicus yFS275]
Length = 172
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 20/95 (21%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G++G+++ ++ +I G + G GF F V+ + I++RPFRGE++ A VT VNK
Sbjct: 41 GQYGYIICVLDSNTIDIDKGKVIPGQGFAEFEVKYRAILWRPFRGEVVDAVVTTVNKMGF 100
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSD 75
L+P DM + PNY+ D
Sbjct: 101 FADVGPLSVFVSSHLVPPDMTFDPAANPPNYSGED 135
>gi|156086074|ref|XP_001610446.1| DNA-directed RNA polymerase II [Babesia bovis T2Bo]
gi|154797699|gb|EDO06878.1| DNA-directed RNA polymerase II, putative [Babesia bovis]
Length = 175
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
++G+VV ++ + G ++DG G + V+ Q IVF+PF+ E+L A VT VNKL
Sbjct: 40 SKYGYVVCVIRIIQNEVGRVQDGTGMIVVNVKYQAIVFKPFKDEVLDAIVTDVNKL 95
>gi|68075119|ref|XP_679476.1| DNA-directed RNA polymerase II [Plasmodium berghei strain ANKA]
gi|70932637|ref|XP_737810.1| DNA-directed RNA polymerase II [Plasmodium chabaudi chabaudi]
gi|56500233|emb|CAI04363.1| DNA-directed RNA polymerase II, putative [Plasmodium berghei]
gi|56513506|emb|CAH85055.1| DNA-directed RNA polymerase II, putative [Plasmodium chabaudi
chabaudi]
Length = 177
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
++G+++ ++ + G ++DG G + V+ Q IVF+PF+ E+L A VT VNKL
Sbjct: 41 KYGYIICVIRIMHSEPGRVQDGTGMIVVKVKYQAIVFKPFKDEVLDAIVTDVNKL 95
>gi|399216595|emb|CCF73282.1| unnamed protein product [Babesia microti strain RI]
Length = 178
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
+ G+VV ++ + +G ++DG G + V+ Q IVF+PF+ E+L A VT VNKL
Sbjct: 40 AKFGYVVCVIRIVHCESGRVQDGTGMIIVSVKYQAIVFKPFKDEVLDAIVTDVNKL 95
>gi|321258118|ref|XP_003193819.1| hypothetical protein CGB_D7770C [Cryptococcus gattii WM276]
gi|317460289|gb|ADV22032.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 172
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+HG++++++ + IG G I G F R IV +PF+GE++ A V VNK+
Sbjct: 40 GKHGYIISVITITDIGEGKIIPSTGQAKFKTRYTAIVMKPFKGEVVDAKVANVNKM 95
>gi|124802663|ref|XP_001347553.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
gi|23495135|gb|AAN35466.1|AE014833_37 DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 177
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
++G+V+ ++ + G ++DG G + V+ Q IVF+PF+ E+L A VT VNKL
Sbjct: 41 KYGYVICVIRIIHSEPGRVQDGTGMIVVKVKYQAIVFKPFKDEVLDAIVTDVNKL 95
>gi|71032221|ref|XP_765752.1| DNA-directed RNA polymerase II subunit Rpb7 [Theileria parva
strain Muguga]
gi|84999556|ref|XP_954499.1| DNA-directed RNA polymerase ii [Theileria annulata]
gi|65305497|emb|CAI73822.1| DNA-directed RNA polymerase ii, putative [Theileria annulata]
gi|68352709|gb|EAN33469.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Theileria
parva]
Length = 175
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
++G+VV ++ + G ++DG + V+ Q IVF+PF+ E+L A VT VNKL
Sbjct: 40 NKYGYVVCVIRIVQNDMGRVQDGTAMIVVNVKYQAIVFKPFKDEVLDAIVTDVNKL 95
>gi|58266678|ref|XP_570495.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57226728|gb|AAW43188.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 172
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+HG++++++ + IG G I G F R IV +PF+GE++ A V VNK+
Sbjct: 40 GKHGYIISVITITDIGEGKIIPSTGQAKFKTRYTAIVMKPFKGEVVDAKVVNVNKM 95
>gi|403220608|dbj|BAM38741.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 180
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
++G+VV ++ + G ++DG + V+ Q IVF+PF+ E+L A VT VNKL
Sbjct: 40 AKYGYVVCVIRIVHNDMGRVQDGTAMIVVNVKYQAIVFKPFKDEVLDAIVTDVNKL 95
>gi|430814255|emb|CCJ28493.1| unnamed protein product [Pneumocystis jirovecii]
Length = 150
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G +G+++ ++ I G G I G G F V + +V+RPFRGE+L A V+ VNK
Sbjct: 19 GNYGYIICVLDSNKIDIGKGRIVPGKGEAEFEVGYKAVVWRPFRGEVLDAIVSTVNKMGF 78
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSD 75
LIP D++ T + P+Y + D
Sbjct: 79 FADVGPFSIFVSSHLIPSDLKFDPTSNPPSYASED 113
>gi|429328615|gb|AFZ80375.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Babesia
equi]
Length = 175
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
++G+VV ++ + G ++DG + V+ Q IVF+PF+ E+L A VT VNKL
Sbjct: 40 AKYGYVVCVIRIVHNEIGRVQDGTAMIVVNVKYQAIVFKPFKDEVLDAIVTDVNKL 95
>gi|443898054|dbj|GAC75392.1| DNA-directed RNA polymerase subunit E' [Pseudozyma antarctica
T-34]
Length = 170
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++G+++ ++G+ +G G + G G F Q +V +PF+GE++ A +T VNK+
Sbjct: 40 GKYGYIIKVVGMIDVGQGKVIPGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKM 95
>gi|388856504|emb|CCF49810.1| probable DNA-directed RNA polymerase II chain Rpb7 [Ustilago
hordei]
Length = 170
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++G+++ ++G+ +G G + G G F Q +V +PF+GE++ A +T VNK+
Sbjct: 40 GKYGYIIKVVGMIDVGQGKVIPGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKM 95
>gi|357134424|ref|XP_003568817.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
1 [Brachypodium distachyon]
gi|357134426|ref|XP_003568818.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
2 [Brachypodium distachyon]
Length = 175
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDM 61
HG+ +A+ ++ I G +R+ G V FPV CI +P +GEIL V V+K++ M
Sbjct: 46 EHGYYIAVNELKEISEGKVRELTGDVLFPVTFTCITLKPMKGEIL---VGSVDKILKHGM 102
Query: 62 ELQTGDLPNYTTSDGSV 78
L++G + N S+ ++
Sbjct: 103 FLKSGPIENIFLSEKTM 119
>gi|448117713|ref|XP_004203323.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|448120153|ref|XP_004203906.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|359384191|emb|CCE78895.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|359384774|emb|CCE78309.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
Length = 173
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ +I G G I G G F V+ + +V++PF+GE++ VT VNK
Sbjct: 40 GQFGYIVCVLDCMNIDVGKGTIIPGTGMAEFEVKYRAVVWKPFKGEVVDGVVTTVNKMGF 99
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP DM+ + + P Y +SD ++
Sbjct: 100 FADVGPLSVFVSTHLIPSDMKFNPSANPPAYMSSDENI 137
>gi|255730463|ref|XP_002550156.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132113|gb|EER31671.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 173
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ I G G I G G F V+ + +V++PF+GE++ A V VNK
Sbjct: 40 GQFGYIVCVLDSSHIDVGKGRIIPGTGMAEFEVKYRAVVWKPFKGEVVDAVVHTVNKMGF 99
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP DM+ + + P+Y+++D +
Sbjct: 100 FADVGPLSVFVSTHLIPSDMKYNSSANPPSYSSNDEHI 137
>gi|190346607|gb|EDK38733.2| hypothetical protein PGUG_02831 [Meyerozyma guilliermondii ATCC
6260]
Length = 173
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ +I G G I G G F V+ + +V++PF+GE++ A VT VNK
Sbjct: 40 GQFGYIVCVLDCMNIDVGKGKIIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGF 99
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP DM+ + + P Y + D ++
Sbjct: 100 FADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDENI 137
>gi|146418273|ref|XP_001485102.1| hypothetical protein PGUG_02831 [Meyerozyma guilliermondii ATCC
6260]
Length = 173
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ +I G G I G G F V+ + +V++PF+GE++ A VT VNK
Sbjct: 40 GQFGYIVCVLDCMNIDVGKGKIIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGF 99
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP DM+ + + P Y + D ++
Sbjct: 100 FADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDENI 137
>gi|126273978|ref|XP_001387367.1| RNA polymerase II subunit [Scheffersomyces stipitis CBS 6054]
gi|126213237|gb|EAZ63344.1| RNA polymerase II subunit [Scheffersomyces stipitis CBS 6054]
Length = 173
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ +I G G I G G F V+ + +V++PF+GE++ A VT VNK
Sbjct: 40 GQFGYIVCVLDCMNIDVGKGRIIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGF 99
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP DM+ + + P Y + D ++
Sbjct: 100 FADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDENI 137
>gi|353236768|emb|CCA68756.1| probable DNA-directed RNA polymerase II chain Rpb7
[Piriformospora indica DSM 11827]
Length = 170
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV 53
G++GF++A++ + +G G++ G G F R + IVF+PF+GE+L VT V
Sbjct: 40 GQYGFIIAVLEIIDVGPGIVLPGNGQAEFKTRYKAIVFKPFKGEVLDGVVTNV 92
>gi|221054089|ref|XP_002261792.1| dna-directed rna polymerase ii [Plasmodium knowlesi strain H]
gi|193808252|emb|CAQ38955.1| dna-directed rna polymerase ii, putative [Plasmodium knowlesi
strain H]
Length = 177
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
++G+++ ++ + G ++DG + V+ Q IVF+PF+ E+L A VT VNKL
Sbjct: 40 AKYGYIICVIRIIHCEPGRVQDGTSMIVVKVKYQAIVFKPFKDEVLDAVVTDVNKL 95
>gi|389582746|dbj|GAB65483.1| DNA-directed RNA polymerase II [Plasmodium cynomolgi strain B]
Length = 177
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
++G+++ ++ + G ++DG + V+ Q IVF+PF+ E+L A VT VNKL
Sbjct: 40 AKYGYIICVIRIIHSEPGRVQDGTSMIVVKVKYQAIVFKPFKDEVLDAVVTDVNKL 95
>gi|156082005|ref|XP_001608495.1| DNA-directed RNA polymerase II [Plasmodium vivax Sal-1]
gi|148801066|gb|EDL42471.1| DNA-directed RNA polymerase II, putative [Plasmodium vivax]
Length = 177
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
++G+++ ++ + G ++DG + V+ Q IVF+PF+ E+L A VT VNKL
Sbjct: 40 AKYGYIICVIRIIHSEPGRVQDGTSMIVVKVKYQAIVFKPFKDEVLDAVVTDVNKL 95
>gi|164657466|ref|XP_001729859.1| hypothetical protein MGL_2845 [Malassezia globosa CBS 7966]
gi|159103753|gb|EDP42645.1| hypothetical protein MGL_2845 [Malassezia globosa CBS 7966]
Length = 186
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+++ ++ V +G G + G G F R Q IV +PF GE++ A +T VNK+
Sbjct: 58 QGYIIKVVSVLDVGQGKVMPGTGLAEFRSRYQAIVLKPFNGEVVDAKITNVNKM 111
>gi|238879354|gb|EEQ42992.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida albicans
WO-1]
Length = 173
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ +I G G I G V F V+ + +V++PF+GE++ A VT VNK
Sbjct: 40 GQFGYIVCVLDSMNIDVGKGRIIPSTGKVEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGF 99
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP DM+ + + P Y + D ++
Sbjct: 100 FADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDENI 137
>gi|303276905|ref|XP_003057746.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460403|gb|EEH57697.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 174
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 18/89 (20%)
Query: 1 GRHGFVVAIMGVESIGTGLIRD-GIGFVTFPVRCQCIVFRPFRGEILGAAVTMV------ 53
GRHG++V + + I G+I D G F V+ I FRPF+ E+L V V
Sbjct: 40 GRHGYIVMVTNIVHISEGMITDDGTARAKFHVKYSAIAFRPFKNEVLDCVVVQVTKFGFF 99
Query: 54 -----------NKLIPDDMELQTGDLPNY 71
N+L+P++M ++ D Y
Sbjct: 100 AEAGPLKLFVSNQLVPEEMVFESVDENAY 128
>gi|331246804|ref|XP_003336033.1| DNA-directed RNA polymerase II subunit rpb7 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309315023|gb|EFP91614.1| DNA-directed RNA polymerase II subunit rpb7 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 172
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GR G+++A++ SI G I+ G G F ++ IV +PF+GE++ V VNK
Sbjct: 40 GRFGYIIAVLRTLSISAGTIQPGTGMAEFVMKYSAIVLKPFKGEVVDGIVGQVNKMGFFV 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSD 75
LIP D++ P +SD
Sbjct: 100 EVGPLQAFVSSHLIPSDLKFDPNANPPCFSSD 131
>gi|237832997|ref|XP_002365796.1| DNA-directed RNA polymerase II subunit RPB7, putative [Toxoplasma
gondii ME49]
gi|211963460|gb|EEA98655.1| DNA-directed RNA polymerase II subunit RPB7, putative [Toxoplasma
gondii ME49]
Length = 207
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+++ ++ + + G ++DG G V R Q I F+PF+ E+L A +T VNKL
Sbjct: 43 GYIICVIRIVHMEAGRVQDGTGMVIVAARYQAIAFKPFKDEVLDAVITDVNKL 95
>gi|221488256|gb|EEE26470.1| DNA-directed RNA polymerase II 19 kDa polypeptide, putative
[Toxoplasma gondii GT1]
gi|221508765|gb|EEE34334.1| DNA-directed RNA polymerase II 19 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 207
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+++ ++ + + G ++DG G V R Q I F+PF+ E+L A +T VNKL
Sbjct: 43 GYIICVIRIVHMEAGRVQDGTGMVIVAARYQAIAFKPFKDEVLDAVITDVNKL 95
>gi|401408717|ref|XP_003883807.1| putative DNA-directed RNA polymerase II subunit RPB7 [Neospora
caninum Liverpool]
gi|325118224|emb|CBZ53775.1| putative DNA-directed RNA polymerase II subunit RPB7 [Neospora
caninum Liverpool]
Length = 209
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+++ ++ + + G ++DG G V R Q I F+PF+ E+L A +T VNKL
Sbjct: 43 GYIICVIRIVHMEAGRVQDGTGMVIVAARYQAIAFKPFKDEVLDAVITDVNKL 95
>gi|50426557|ref|XP_461875.1| DEHA2G07546p [Debaryomyces hansenii CBS767]
gi|49657545|emb|CAG90338.1| DEHA2G07546p [Debaryomyces hansenii CBS767]
Length = 173
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ +I G G + G G F V+ + +V++PF+GE++ A VT VNK
Sbjct: 40 GQFGYIVCVLDCMNIDVGKGRVIPGSGVAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGF 99
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP DM+ + + P Y + D ++
Sbjct: 100 FADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDENI 137
>gi|403418884|emb|CCM05584.1| predicted protein [Fibroporia radiculosa]
Length = 170
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+ G+++A++ + IG G++ G G F R + IVF+PF+GE++ V V K+
Sbjct: 40 GQFGYIIAVVSILDIGKGMVLSGSGQAEFITRYRAIVFKPFKGEVVDGVVNNVTKM 95
>gi|390596943|gb|EIN06344.1| hypothetical protein PUNSTDRAFT_73661 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 186
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++G++++++ + IG G I G G F R + IVF+PF+GE++ V VNK+
Sbjct: 49 GKYGYIISVVTLMDIGRGTILPGSGQAEFVARYRAIVFKPFKGEVVDGIVNNVNKM 104
>gi|68475103|ref|XP_718437.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|68475644|ref|XP_718170.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|241948197|ref|XP_002416821.1| DNA-directed RNA polymerase II 19 kda polypeptide, putative;
DNA-directed RNA polymerase II core complex subunit,
putative [Candida dubliniensis CD36]
gi|12655858|gb|AAK00627.1| RNA polymerase II subunit 7 [Candida albicans]
gi|46439926|gb|EAK99238.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|46440202|gb|EAK99511.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|223640159|emb|CAX44406.1| DNA-directed RNA polymerase II 19 kda polypeptide, putative
[Candida dubliniensis CD36]
Length = 173
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ +I G G I G F V+ + +V++PF+GE++ A VT VNK
Sbjct: 40 GQFGYIVCVLDSMNIDVGKGRIIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGF 99
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP DM+ + + P Y + D ++
Sbjct: 100 FADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDENI 137
>gi|328773740|gb|EGF83777.1| hypothetical protein BATDEDRAFT_29094 [Batrachochytrium
dendrobatidis JAM81]
Length = 180
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 37/56 (66%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+ G++++++ + +G G+++ GF F + + IVF+PF+ +++ VT VNK+
Sbjct: 40 GQFGYIISVVDIVDVGKGVLQSNTGFAQFEILYKAIVFKPFKNQVVDGLVTTVNKI 95
>gi|357134557|ref|XP_003568883.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 175
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDM 61
HG+ +A+ ++ I G +R+ G V FPV CI +P +GEIL V V K++ +
Sbjct: 46 EHGYYIAVNELKEISEGKVRELTGDVLFPVTFTCITLKPMKGEIL---VGSVEKILKHGV 102
Query: 62 ELQTGDLPNYTTSDGSV 78
L++G + N S+ ++
Sbjct: 103 FLKSGPIENVFLSEKTM 119
>gi|344234578|gb|EGV66446.1| hypothetical protein CANTEDRAFT_112179 [Candida tenuis ATCC 10573]
Length = 173
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ +I G G I G F V+ + +V++PF+GE++ A VT VNK
Sbjct: 40 GQFGYIVCVLDCMNIDVGKGRIIPSSGMAEFEVKYRAVVWKPFKGEVVDAIVTTVNKMGF 99
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP DM+ + + P Y + D ++
Sbjct: 100 FADVGPLSVFVSTHLIPSDMQFNPSANPPAYVSQDENI 137
>gi|358054534|dbj|GAA99460.1| hypothetical protein E5Q_06159 [Mixia osmundae IAM 14324]
Length = 207
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 23/104 (22%)
Query: 1 GRHGFVVAIMGVES-----IGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G HG++VA++ V S G I+ G G F V +VFRPF+GE+L VT VNK
Sbjct: 40 GLHGYIVAVLVVGSGEGPFKPQGTIQPGTGMAEFEVPYLAVVFRPFKGEVLDGVVTTVNK 99
Query: 56 -----------------LIPDDMELQTGDLPNYT-TSDGSVCIS 81
L+P DM+ P ++ D S+ I
Sbjct: 100 MGFFVEVGALTVFVSAHLMPGDMKFSEDSPPRFSRMGDDSMAIQ 143
>gi|406694604|gb|EKC97928.1| hypothetical protein A1Q2_07725 [Trichosporon asahii var. asahii
CBS 8904]
Length = 171
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+HG++++++ V IG G I G F IV +PF+GE++ V+ VNK+
Sbjct: 40 GKHGYIISVVNVTDIGEGKIMPSTGQARFKCSYTAIVMKPFKGEVVDGKVSNVNKM 95
>gi|401885038|gb|EJT49169.1| hypothetical protein A1Q1_01650 [Trichosporon asahii var. asahii
CBS 2479]
Length = 171
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+HG++++++ V IG G I G F IV +PF+GE++ V+ VNK+
Sbjct: 40 GKHGYIISVVNVTDIGEGKIMPSTGQARFKCSYTAIVMKPFKGEVVDGKVSNVNKM 95
>gi|344304448|gb|EGW34680.1| RNA polymerase II subunit [Spathaspora passalidarum NRRL Y-27907]
Length = 173
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ +I G G I G G F V+ + +V++PF+GE++ VT VNK
Sbjct: 40 GQFGYIVCVLDCMNIDVGKGRIIPGSGMAEFEVKYRAVVWKPFKGEVVDGVVTTVNKMGF 99
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP DM+ + + P Y + D ++
Sbjct: 100 FADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDENI 137
>gi|326527317|dbj|BAK04600.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDD 60
HG+ +A+ +++I G +R+ G V FPV CI RP +GEIL V V K++
Sbjct: 45 NEHGYYIAVNELKTISEGKVRELTGDVLFPVTFTCITQRPMKGEIL---VGSVEKILKHG 101
Query: 61 MELQTGDLPNYTTSDGSVC 79
+ L++G + + S+ S+
Sbjct: 102 VFLKSGPIESIFLSEKSMS 120
>gi|302687740|ref|XP_003033550.1| hypothetical protein SCHCODRAFT_234509 [Schizophyllum commune H4-8]
gi|300107244|gb|EFI98647.1| hypothetical protein SCHCODRAFT_234509 [Schizophyllum commune H4-8]
Length = 167
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 15/91 (16%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT--------- 51
GR G+++A++ + IG G++ G G F R + IVF+PF+GE++ V
Sbjct: 40 GRFGYIIAVVSILDIGKGMVMSGSGQAEFITRYRAIVFKPFKGEVVDGVVNNMGFFADVG 99
Query: 52 -----MVNKLIPDDMELQ-TGDLPNYTTSDG 76
+ ++LI DM+ + P++ + D
Sbjct: 100 PLTVFVSHQLIHPDMKFDPNSNPPSFASEDA 130
>gi|82596806|ref|XP_726413.1| RNA polymerase II subunit 7 [Plasmodium yoelii yoelii 17XNL]
gi|23481815|gb|EAA17978.1| RNA polymerase II subunit 7 [Plasmodium yoelii yoelii]
Length = 193
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLI 57
++G+++ ++ + G ++DG G + V+ Q IVF+PF+ E+L ++NKLI
Sbjct: 41 KYGYIICVIRIMHSEPGRVQDGTGMIVVKVKYQAIVFKPFKDEVLFKINKLINKLI 96
>gi|326426973|gb|EGD72543.1| hypothetical protein PTSG_00566 [Salpingoeca sp. ATCC 50818]
Length = 171
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+HG++V+++ + IG G I G FPV + +VFRP + E++ A V+ V K+
Sbjct: 40 GKHGYIVSVIEIVKIGEGEILVARGETLFPVTYRALVFRPVKNEVVDAIVSTVTKM 95
>gi|209882951|ref|XP_002142910.1| DNA-directed RNA polymerase II subunit RPB7 [Cryptosporidium
muris RN66]
gi|209558516|gb|EEA08561.1| DNA-directed RNA polymerase II subunit RPB7, putative
[Cryptosporidium muris RN66]
Length = 176
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+VV ++ + G I+DG G + P++ Q IV+RP +GE++ V VN+L
Sbjct: 43 GYVVCVVRILLRQPGRIQDGTGLIIVPIKYQAIVYRPMKGEVIDGTVESVNEL 95
>gi|340992705|gb|EGS23260.1| hypothetical protein CTHT_0009270 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 171
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN---------- 54
+V+AIM I G I G G F V + +V+RPF+ E++ A VT VN
Sbjct: 43 YVIAIMDTFDISEGRILPGSGLAEFTVGYRAVVWRPFKNEVIDAIVTTVNPHGFFAQAGP 102
Query: 55 -------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPD+++ P T++ + I
Sbjct: 103 LRLFVSTHLIPDEIKYDASATPPQFTNNADIVIE 136
>gi|149244114|ref|XP_001526600.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448994|gb|EDK43250.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 173
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ +I G G I G F V+ + +V++PF+GE++ VT VNK
Sbjct: 40 GQFGYIVCVLDSMNIDVGKGRIIPSSGMAEFEVKYRAVVWKPFKGEVVDGVVTTVNKMGF 99
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP DM+ + + P Y++ D ++
Sbjct: 100 FADVGPLSVFVSTHLIPSDMKFNPSANPPAYSSPDENI 137
>gi|448519863|ref|XP_003868179.1| Rpb7 protein [Candida orthopsilosis Co 90-125]
gi|354544173|emb|CCE40896.1| hypothetical protein CPAR2_109340 [Candida parapsilosis]
gi|380352518|emb|CCG22744.1| Rpb7 protein [Candida orthopsilosis]
Length = 173
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ +I G G I G F V+ + +V++PF+GE++ VT VNK
Sbjct: 40 GQFGYIVCVLDSMNIDVGKGRIIPTTGMAEFEVKYRAVVWKPFKGEVVDGVVTTVNKMGF 99
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP DM+ + + P Y++ D ++
Sbjct: 100 FADVGPLSVFVSTHLIPSDMKFNPSANPPAYSSPDENI 137
>gi|425765811|gb|EKV04459.1| RNA polymerase II subunit 7 [Penicillium digitatum PHI26]
gi|425783900|gb|EKV21717.1| RNA polymerase II subunit 7 [Penicillium digitatum Pd1]
Length = 169
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN------ 54
G H FV+ +M + IG G + GIG + +R + I+++PFRGE + A VT V
Sbjct: 40 GDH-FVICVMDMVDIGEGRVMPGIGQAEYTIRYRAIIWKPFRGETVDAIVTSVKPTGIFT 98
Query: 55 -----------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
K IP D++ + +P T I
Sbjct: 99 LAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIE 136
>gi|126644185|ref|XP_001388228.1| DNA-directed RNA polymerase II [Cryptosporidium parvum Iowa II]
gi|126117301|gb|EAZ51401.1| DNA-directed RNA polymerase II, putative [Cryptosporidium parvum
Iowa II]
Length = 178
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
+G+VV ++ + G ++D G + PV+ Q IV+RP +GE++ V VN+L
Sbjct: 42 YGYVVCVIKIILKQPGRVQDSTGLIIVPVKYQAIVYRPIKGEVVDGVVESVNEL 95
>gi|255931335|ref|XP_002557224.1| Pc12g03390 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581843|emb|CAP79966.1| Pc12g03390 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 167
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN------ 54
G H FV+ +M + IG G + GIG + +R + I+++PFRGE + A VT V
Sbjct: 40 GDH-FVICVMDMVDIGEGRVMPGIGQAEYTIRYRAIIWKPFRGETVDAIVTSVKPTGIFT 98
Query: 55 -----------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
K IP D++ + +P T I
Sbjct: 99 LAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIE 136
>gi|297737162|emb|CBI26363.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ +A+ +E+IG G +R G V FPV C+ F+ FRGEIL V V K
Sbjct: 112 GYFLAVTTLENIGEGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLK 163
>gi|392564925|gb|EIW58102.1| hypothetical protein TRAVEDRAFT_167523 [Trametes versicolor
FP-101664 SS1]
Length = 170
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G G+++A++ + IG G++ G G F R + IVF+PF+G+++ V V K+
Sbjct: 40 GEFGYIIAVVSILDIGKGMVLAGSGQAEFVTRYRAIVFKPFKGQVVDGVVNNVTKM 95
>gi|225432916|ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147822056|emb|CAN61549.1| hypothetical protein VITISV_043525 [Vitis vinifera]
Length = 177
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ +A+ +E+IG G +R G V FPV C+ F+ FRGEIL V V K
Sbjct: 47 GYFLAVTTLENIGEGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLK 98
>gi|260944176|ref|XP_002616386.1| hypothetical protein CLUG_03627 [Clavispora lusitaniae ATCC 42720]
gi|238850035|gb|EEQ39499.1| hypothetical protein CLUG_03627 [Clavispora lusitaniae ATCC 42720]
Length = 141
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 20/98 (20%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G++V ++ +I G G I G G F V+ + +V++PF+GE++ A VT VNK
Sbjct: 8 GQFGYIVCVLDCMNIDVGRGRIIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGF 67
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LI DM+ + + P Y + D ++
Sbjct: 68 FADVGPLSVFVSTHLISSDMKFNPSANPPAYVSPDETI 105
>gi|393248136|gb|EJD55643.1| hypothetical protein AURDEDRAFT_78882 [Auricularia delicata
TFB-10046 SS5]
Length = 170
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+ G+++A++ + IG G++ G G F R + IVF+PF+GE++ V+ V K+
Sbjct: 40 GQFGYIIAVIDLVDIGRGIVLPGSGQAEFVTRYRAIVFKPFKGEVVDGVVSSVLKM 95
>gi|57863806|gb|AAS98454.2| putative receptor kinase [Oryza sativa Japonica Group]
Length = 715
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDME 62
HG+ +A+ +++I G +R+ G V FPV CI +P +GEIL V V+K++ +
Sbjct: 82 HGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEIL---VGSVDKILKHGVF 138
Query: 63 LQTGDLPNYTTSDGSV 78
L++G + + S+ ++
Sbjct: 139 LKSGPIESIFLSEKTL 154
>gi|222630667|gb|EEE62799.1| hypothetical protein OsJ_17602 [Oryza sativa Japonica Group]
Length = 796
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDME 62
HG+ +A+ +++I G +R+ G V FPV CI +P +GEIL V V+K++ +
Sbjct: 47 HGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEIL---VGSVDKILKHGVF 103
Query: 63 LQTGDLPNYTTSDGSV 78
L++G + + S+ ++
Sbjct: 104 LKSGPIESIFLSEKTL 119
>gi|115462713|ref|NP_001054956.1| Os05g0224700 [Oryza sativa Japonica Group]
gi|113578507|dbj|BAF16870.1| Os05g0224700 [Oryza sativa Japonica Group]
Length = 782
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDME 62
HG+ +A+ +++I G +R+ G V FPV CI +P +GEIL V V+K++ +
Sbjct: 47 HGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEIL---VGSVDKILKHGVF 103
Query: 63 LQTGDLPNYTTSDGSV 78
L++G + + S+ ++
Sbjct: 104 LKSGPIESIFLSEKTL 119
>gi|242086985|ref|XP_002439325.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
gi|241944610|gb|EES17755.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
Length = 175
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDME 62
HG+ VA+ +++I G +R+ G V FPV CI +P +GE++ V V++++ +
Sbjct: 47 HGYYVAVSQLKAISEGKVRELTGDVLFPVSFTCITLKPMKGEVM---VGHVDRILKHGVF 103
Query: 63 LQTGDLPNYTTSDGSVC 79
L++G + + ++ S+
Sbjct: 104 LKSGPVESIFLAEKSMS 120
>gi|429963922|gb|ELA45920.1| hypothetical protein VCUG_02589 [Vavraia culicis 'floridensis']
Length = 155
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
HGF++A++ ++++G ++ + +G V F V+ I +P R E++ A V VNK+
Sbjct: 42 HGFILAVISIQNVGEAVL-NHMGSVLFKVKYTAITLKPVRNEVIEAKVDEVNKM 94
>gi|115462207|ref|NP_001054703.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|45267865|gb|AAS55764.1| putative RNA polymerase II [Oryza sativa Japonica Group]
gi|113578254|dbj|BAF16617.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|125550915|gb|EAY96624.1| hypothetical protein OsI_18537 [Oryza sativa Indica Group]
gi|215692867|dbj|BAG88287.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630264|gb|EEE62396.1| hypothetical protein OsJ_17187 [Oryza sativa Japonica Group]
Length = 175
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDME 62
HG+ +A+ +++I G +R+ G V FPV CI +P +GE+L V V+K++ +
Sbjct: 47 HGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPMKGEVL---VGSVDKILKHGIF 103
Query: 63 LQTGDLPNYTTSDGSVC 79
L++G + + S+ ++
Sbjct: 104 LKSGPIESIFLSEKTMS 120
>gi|403341587|gb|EJY70102.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Oxytricha
trifallax]
gi|403342420|gb|EJY70530.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Oxytricha
trifallax]
Length = 174
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 1 GRHGFVVAI--MGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAV 50
G +G+++ I M + I G I+D G V + V+ + +VFRPFRGE+L V
Sbjct: 40 GTYGYIIQIIQMKPQDISDGRIQDTTGDVIYKVKFKALVFRPFRGEVLDGEV 91
>gi|90018178|gb|ABD83902.1| DNA directed RNA polymerase II polypeptide G [Ictalurus
punctatus]
Length = 86
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 18/71 (25%)
Query: 29 FPVRCQCIVFRPFRGEILGAAVTMVNKL-----------------IPDDMELQ-TGDLPN 70
+PV+ + IVFRPF+GE++ A VT VNK+ IP +ME + P
Sbjct: 5 YPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPC 64
Query: 71 YTTSDGSVCIS 81
Y T D V I
Sbjct: 65 YKTVDEDVVIQ 75
>gi|255563208|ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223538083|gb|EEF39694.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ +A+ +ESIG G +R+ G V FPV I F+ FRGEIL V V K
Sbjct: 47 GYYLAVTTLESIGEGKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLK 98
>gi|218196310|gb|EEC78737.1| hypothetical protein OsI_18944 [Oryza sativa Indica Group]
Length = 175
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDME 62
HG+ +A+ +++I G +R+ G V FPV CI +P +GEIL V V+K++ +
Sbjct: 47 HGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEIL---VGSVDKILKHGVF 103
Query: 63 LQTGDLPNYTTSDGSVC 79
L++G + + S+ ++
Sbjct: 104 LKSGPIESIFLSEKTLS 120
>gi|406866054|gb|EKD19094.1| RNA polymerase Rpb7-like domain-containing protein [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 172
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 19/96 (19%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GR+ F++ IM +I G I G G F V + +V+RPF+GE + A VT VN+
Sbjct: 40 GRY-FIITIMDTFNISEGRILPGSGLAEFTVGYRAVVWRPFKGETVDAIVTSVNQVGFFA 98
Query: 56 ------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP D++ P +T ++ SV
Sbjct: 99 DAGPLPIFVSAHLIPPDIKFDPNATPPQFTNNEDSV 134
>gi|134110566|ref|XP_776110.1| hypothetical protein CNBD1580 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258778|gb|EAL21463.1| hypothetical protein CNBD1580 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 169
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAV 50
G+HG++++++ + IG G I G F R IV +PF+GE++ A V
Sbjct: 40 GKHGYIISVITITDIGEGKIIPSTGQAKFKTRYTAIVMKPFKGEVVDAKV 89
>gi|242820484|ref|XP_002487519.1| RNA polymerase II subunit 7 [Talaromyces stipitatus ATCC 10500]
gi|218713984|gb|EED13408.1| RNA polymerase II subunit 7 [Talaromyces stipitatus ATCC 10500]
Length = 169
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN------ 54
G H FV+ +M + IG G + G G + ++ + I+++PFRGE + A VT V
Sbjct: 40 GDH-FVICVMDMVDIGEGRVIPGSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFT 98
Query: 55 -----------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
K IP D++ + G +P T I
Sbjct: 99 LAGPLSVFIARKNIPSDIKWEPGTVPPQYTDHADQVIE 136
>gi|367042626|ref|XP_003651693.1| hypothetical protein THITE_2112268 [Thielavia terrestris NRRL 8126]
gi|346998955|gb|AEO65357.1| hypothetical protein THITE_2112268 [Thielavia terrestris NRRL 8126]
Length = 167
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN---------- 54
+++AIM + G I G G F V + +V+RPF+GE++ A VN
Sbjct: 43 YIIAIMDTFDVSEGRILPGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGP 102
Query: 55 -------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
+L+PD+++ P T++ + I
Sbjct: 103 LRLFVSSQLMPDEIQYDASATPAQFTNNADIVIE 136
>gi|212545789|ref|XP_002153048.1| RNA polymerase II subunit 7 [Talaromyces marneffei ATCC 18224]
gi|210064568|gb|EEA18663.1| RNA polymerase II subunit 7 [Talaromyces marneffei ATCC 18224]
Length = 169
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN------ 54
G H FV+ +M + IG G + G G + ++ + I+++PFRGE + A VT V
Sbjct: 40 GDH-FVICVMDMVDIGDGRVIPGSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFT 98
Query: 55 -----------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
K IP D++ + G +P T I
Sbjct: 99 LAGPLSVFIARKNIPSDIKWEPGTVPPQYTDHADQVIE 136
>gi|367020616|ref|XP_003659593.1| hypothetical protein MYCTH_2123230 [Myceliophthora thermophila ATCC
42464]
gi|347006860|gb|AEO54348.1| hypothetical protein MYCTH_2123230 [Myceliophthora thermophila ATCC
42464]
Length = 171
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN---------- 54
+++AIM + G I G G F V + +V+RPF+GE++ A VN
Sbjct: 43 YIIAIMDTFDVSEGRILPGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGP 102
Query: 55 -------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
L+PD+++ P T++ + I
Sbjct: 103 LRLFVSSHLMPDEIQYDASATPAQFTNNADIVIE 136
>gi|224102153|ref|XP_002312568.1| predicted protein [Populus trichocarpa]
gi|222852388|gb|EEE89935.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMEL 63
G+ +A+ +ESIG G +R G V FPV I F+ FRGEIL +V+K++ + L
Sbjct: 47 GYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDG---IVHKVLKHGVLL 103
Query: 64 QTGDLPNYTTS 74
+ G + N S
Sbjct: 104 RCGPIENIYLS 114
>gi|408398876|gb|EKJ78002.1| hypothetical protein FPSE_01790 [Fusarium pseudograminearum CS3096]
Length = 172
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN---------- 54
F+++IM I G I G+G F V + +V+RPF+GE + A V +N
Sbjct: 43 FIISIMDAFEISEGRILPGLGMAEFTVGYRAVVWRPFKGETVDAVVHSINPQGFFAHAGP 102
Query: 55 -------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP+D++ P T++ I
Sbjct: 103 LRLFVSAHLIPNDVKWDPNATPPQFTNNEDTVIE 136
>gi|116207108|ref|XP_001229363.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183444|gb|EAQ90912.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 202
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN---------- 54
+++AIM + G I G G F V + +V+RPF+GE++ A VN
Sbjct: 43 YIIAIMDTFDVSEGRILPGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGP 102
Query: 55 -------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
L+PD+++ P T++ + I
Sbjct: 103 LRLFVSSHLMPDEIQYDASATPAQFTNNADIVIE 136
>gi|226493930|ref|NP_001150375.1| LOC100284005 [Zea mays]
gi|194705372|gb|ACF86770.1| unknown [Zea mays]
gi|195638760|gb|ACG38848.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|195658229|gb|ACG48582.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|413944600|gb|AFW77249.1| DNA-directed RNA polymerase II polypeptide isoform 1 [Zea mays]
gi|413944601|gb|AFW77250.1| DNA-directed RNA polymerase II polypeptide isoform 2 [Zea mays]
gi|413944602|gb|AFW77251.1| DNA-directed RNA polymerase II polypeptide isoform 3 [Zea mays]
Length = 175
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDME 62
HG+ +A+ +++I G +R+ G V FPV CI +P +GE++ V V++++ +
Sbjct: 47 HGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVM---VGHVDRILKHGVF 103
Query: 63 LQTGDLPNYTTSDGSVC 79
L++G + + ++ S+
Sbjct: 104 LKSGPVESIFLAEKSMS 120
>gi|169846764|ref|XP_001830096.1| DNA-directed RNA polymerase II subunit [Coprinopsis cinerea
okayama7#130]
gi|116508866|gb|EAU91761.1| DNA-directed RNA polymerase II subunit [Coprinopsis cinerea
okayama7#130]
Length = 170
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE 44
G+ G+++A++ + IG G++ G G F R + IVF+PF+GE
Sbjct: 40 GQFGYIIAVVSILDIGKGMVLSGSGQAEFITRYRAIVFKPFKGE 83
>gi|449432628|ref|XP_004134101.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449432630|ref|XP_004134102.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504102|ref|XP_004162253.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504105|ref|XP_004162254.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 190
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV 53
HG+ +++ + SIG G++++ V+FP+ C F PF GEIL V +
Sbjct: 46 HGYFLSVTSLRSIGKGIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHI 96
>gi|154295091|ref|XP_001547983.1| hypothetical protein BC1G_13674 [Botryotinia fuckeliana B05.10]
gi|347831716|emb|CCD47413.1| similar to DNA-directed RNA polymerase II subunit rpb7 [Botryotinia
fuckeliana]
Length = 172
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 18/92 (19%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN---------- 54
+++ IM +I G I G G F V + +V+RPF+GE + A VT VN
Sbjct: 43 YIITIMDTFNISEGRILPGSGLAEFTVGYRAVVWRPFKGETVDAIVTSVNAVGFFADAGP 102
Query: 55 -------KLIPDDMELQTGDL-PNYTTSDGSV 78
LIP D++ P +T ++ SV
Sbjct: 103 LPLFVSAHLIPRDIKFDANATPPQFTNNEDSV 134
>gi|409081234|gb|EKM81593.1| hypothetical protein AGABI1DRAFT_111877 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196468|gb|EKV46396.1| hypothetical protein AGABI2DRAFT_193120 [Agaricus bisporus var.
bisporus H97]
Length = 170
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE 44
G+ G+++A++ + IG G++ G G F R + IVF+PF+GE
Sbjct: 40 GQFGYIIAVVSILDIGKGMVLSGSGQAEFVTRYRAIVFKPFKGE 83
>gi|156050367|ref|XP_001591145.1| hypothetical protein SS1G_07770 [Sclerotinia sclerotiorum 1980]
gi|154692171|gb|EDN91909.1| hypothetical protein SS1G_07770 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 167
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 18/92 (19%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN---------- 54
+++ IM +I G I G G F V + +V+RPF+GE + A VT VN
Sbjct: 43 YIITIMDTFNISEGRILPGSGLAEFTVGYRAVVWRPFKGETVDAIVTSVNAVGFFADAGP 102
Query: 55 -------KLIPDDMELQTGDL-PNYTTSDGSV 78
LIP D++ P +T ++ SV
Sbjct: 103 LPLFVSAHLIPRDIKFDANATPPQFTNNEDSV 134
>gi|38567178|emb|CAE76471.1| probable DNA-directed RNA polymerase II chain Rpb7 [Neurospora
crassa]
Length = 167
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMELQ 64
+++AIM + G I G G F V+ + +V+RPF+GE++ A V +N P Q
Sbjct: 43 YIIAIMDAFDVSEGRILPGNGLAEFTVKYRAVVWRPFKGEVVDAIVFSIN---PHGFFCQ 99
Query: 65 TGDLPNYTTS 74
G L + +S
Sbjct: 100 AGPLSIFVSS 109
>gi|393221726|gb|EJD07210.1| hypothetical protein FOMMEDRAFT_137613 [Fomitiporia mediterranea
MF3/22]
Length = 170
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE 44
G+ G+++A++ V IG G++ G G F R + IVF+PF+GE
Sbjct: 40 GQFGYIIAVVSVLDIGKGMVLPGSGQAEFVTRYRAIVFKPFKGE 83
>gi|336272519|ref|XP_003351016.1| hypothetical protein SMAC_04320 [Sordaria macrospora k-hell]
gi|336464760|gb|EGO53000.1| hypothetical protein NEUTE1DRAFT_150414 [Neurospora tetrasperma
FGSC 2508]
gi|350296863|gb|EGZ77840.1| putative DNA-directed RNA polymerase II chain Rpb7 [Neurospora
tetrasperma FGSC 2509]
gi|380090783|emb|CCC04953.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 171
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMELQ 64
+++AIM + G I G G F V+ + +V+RPF+GE++ A V +N P Q
Sbjct: 43 YIIAIMDAFDVSEGRILPGNGLAEFTVKYRAVVWRPFKGEVVDAIVFSIN---PHGFFCQ 99
Query: 65 TGDLPNYTTS 74
G L + +S
Sbjct: 100 AGPLSIFVSS 109
>gi|345566807|gb|EGX49749.1| hypothetical protein AOL_s00078g238 [Arthrobotrys oligospora ATCC
24927]
Length = 169
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 19/96 (19%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GR+ +++ ++ +I G I G G F + + +V+RPF+GE + VT V+K
Sbjct: 40 GRY-YIICVLDAYNISMGKILPGSGLAEFTISYRAVVWRPFKGETVDGVVTAVSKLGFFA 98
Query: 56 ------------LIPDDMELQ-TGDLPNYTTSDGSV 78
LIP D++ T + P ++ ++G V
Sbjct: 99 NVGPLPVFVSTHLIPADVKFDPTANPPQFSDNEGQV 134
>gi|121719878|ref|XP_001276637.1| RNA polymerase II subunit 7 [Aspergillus clavatus NRRL 1]
gi|119404849|gb|EAW15211.1| RNA polymerase II subunit 7 [Aspergillus clavatus NRRL 1]
Length = 169
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN------ 54
G H FV+ +M + IG G + G G + ++ + I+++PFRGE + A VT V
Sbjct: 40 GDH-FVICVMDMVDIGEGRVLPGSGSAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFT 98
Query: 55 -----------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
K IP D++ + +P T I
Sbjct: 99 LAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIE 136
>gi|164427822|ref|XP_965434.2| DNA-directed RNA polymerase II 19 kDa polypeptide [Neurospora
crassa OR74A]
gi|157071898|gb|EAA36198.2| DNA-directed RNA polymerase II 19 kDa polypeptide [Neurospora
crassa OR74A]
Length = 150
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMELQ 64
+++AIM + G I G G F V+ + +V+RPF+GE++ A V +N P Q
Sbjct: 22 YIIAIMDAFDVSEGRILPGNGLAEFTVKYRAVVWRPFKGEVVDAIVFSIN---PHGFFCQ 78
Query: 65 TGDLPNYTTS 74
G L + +S
Sbjct: 79 AGPLSIFVSS 88
>gi|170106467|ref|XP_001884445.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640791|gb|EDR05055.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 170
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE 44
G+ G+++A++ + IG G++ G G F R + IVF+PF+GE
Sbjct: 40 GQFGYIIAVVSILDIGKGMVLSGSGQAEFITRYRAIVFKPFKGE 83
>gi|119484588|ref|XP_001262073.1| RNA polymerase II subunit 7 [Neosartorya fischeri NRRL 181]
gi|119410229|gb|EAW20176.1| RNA polymerase II subunit 7 [Neosartorya fischeri NRRL 181]
Length = 167
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN------ 54
G H FV+ +M + IG G + G G + ++ + I+++PFRGE + A VT V
Sbjct: 40 GDH-FVICVMDMVDIGEGRVLPGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFT 98
Query: 55 -----------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
K IP D++ + +P T I
Sbjct: 99 LAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIE 136
>gi|118487294|gb|ABK95475.1| unknown [Populus trichocarpa]
Length = 176
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMEL 63
G+ +A+ +ESIG G +R G V FPV I F+ F+GEIL +V+K++ + L
Sbjct: 47 GYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFKGEILEG---VVHKVLKHGVLL 103
Query: 64 QTGDLPNYTTS 74
+ G + N S
Sbjct: 104 RCGPIENIYLS 114
>gi|224107923|ref|XP_002314654.1| predicted protein [Populus trichocarpa]
gi|222863694|gb|EEF00825.1| predicted protein [Populus trichocarpa]
Length = 193
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ +A+ +ESIG G +R G V FPV I F+ F+GEIL V V K
Sbjct: 64 GYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLK 115
>gi|145253060|ref|XP_001398043.1| DNA-directed RNA polymerase II subunit rpb7 [Aspergillus niger CBS
513.88]
gi|134083601|emb|CAL00516.1| unnamed protein product [Aspergillus niger]
gi|350633119|gb|EHA21485.1| DNA-directed RNA polymerase II [Aspergillus niger ATCC 1015]
gi|358372658|dbj|GAA89260.1| RNA polymerase II subunit 7 [Aspergillus kawachii IFO 4308]
Length = 167
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN------ 54
G H FV+ +M + IG G + G G + ++ + I+++PFRGE + A VT V
Sbjct: 40 GDH-FVICVMDMVDIGEGRVLPGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFT 98
Query: 55 -----------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
K IP D++ + +P T I
Sbjct: 99 LAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIE 136
>gi|449548439|gb|EMD39406.1| hypothetical protein CERSUDRAFT_113038 [Ceriporiopsis
subvermispora B]
Length = 170
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE 44
G+ G+++A++ + IG G++ G G F R + IVF+PF+GE
Sbjct: 40 GQFGYIIAVVSILDIGKGMVLPGSGQAEFVTRYRAIVFKPFKGE 83
>gi|392585942|gb|EIW75280.1| hypothetical protein CONPUDRAFT_132203 [Coniophora puteana
RWD-64-598 SS2]
Length = 170
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE 44
G+ G+++A++ + IG G++ G G F R + IVF+PF+GE
Sbjct: 40 GQFGYIIAVVSILDIGRGMVLSGSGQAEFVTRYRAIVFKPFKGE 83
>gi|242210404|ref|XP_002471045.1| predicted protein [Postia placenta Mad-698-R]
gi|220729947|gb|EED83813.1| predicted protein [Postia placenta Mad-698-R]
Length = 170
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE 44
G+ G+++A++ + IG G++ G G F R + IVF+PF+GE
Sbjct: 40 GQFGYIIAVVSILDIGKGMVISGSGQAEFITRYRAIVFKPFKGE 83
>gi|320582151|gb|EFW96369.1| RNA polymerase II subunit [Ogataea parapolymorpha DL-1]
Length = 172
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGI-GFVTFPVRCQCIVFRPFRGEILGAAVTMVNK-- 55
G+ G+++ ++ SI G G I G G+ F V+ + +V++PF+GE++ A V+ VN
Sbjct: 40 GQFGYIICVLDSMSIDVGKGKIVPGQQGYAEFEVKYRAVVWKPFKGEVVDAIVSSVNNMG 99
Query: 56 ---------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP DM+ P S+ V +
Sbjct: 100 FFADVGPLSVFISKHLIPKDMKYTPSHTPPAYISEDQVIMK 140
>gi|389739088|gb|EIM80282.1| hypothetical protein STEHIDRAFT_105350 [Stereum hirsutum FP-91666
SS1]
Length = 170
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE 44
G+ G+++A++ + IG G++ G G F R + IVF+PF+GE
Sbjct: 40 GQFGYIIAVVSILDIGKGMVLGGSGQAEFVTRYRAIVFKPFKGE 83
>gi|409045255|gb|EKM54736.1| hypothetical protein PHACADRAFT_175251 [Phanerochaete carnosa
HHB-10118-sp]
Length = 170
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE 44
G+ G+++A++ + +IG G++ G G F R + IVF+PF+GE
Sbjct: 40 GQFGYIIAVVTILNIGEGMVLPGSGQAEFITRYRAIVFKPFKGE 83
>gi|351724841|ref|NP_001238607.1| uncharacterized protein LOC100527862 [Glycine max]
gi|255633396|gb|ACU17055.1| unknown [Glycine max]
Length = 180
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ +A+ +E IG G +R G V FPV I F+ F+GEIL V V K
Sbjct: 47 GYFLAVTTLEKIGEGKVRQHTGDVLFPVVFNVITFKFFKGEILEGVVHKVLK 98
>gi|67522128|ref|XP_659125.1| hypothetical protein AN1521.2 [Aspergillus nidulans FGSC A4]
gi|40744621|gb|EAA63777.1| hypothetical protein AN1521.2 [Aspergillus nidulans FGSC A4]
gi|259486847|tpe|CBF85037.1| TPA: RNA polymerase II subunit 7 (AFU_orthologue; AFUA_8G05300)
[Aspergillus nidulans FGSC A4]
Length = 169
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN------ 54
G H FV+ +M + IG G + G G + ++ + I+++PFRGE + A VT V
Sbjct: 40 GDH-FVICVMDMVDIGEGRVLPGNGQAEYTIKYRAIIWKPFRGETVDALVTSVKPTGIFT 98
Query: 55 -----------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
K IP D+ + +P T I
Sbjct: 99 LAGPLSVFIARKNIPSDIRWEPNTVPPQYTDHADQVIE 136
>gi|336368539|gb|EGN96882.1| hypothetical protein SERLA73DRAFT_185108 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381330|gb|EGO22482.1| hypothetical protein SERLADRAFT_473371 [Serpula lacrymans var.
lacrymans S7.9]
Length = 170
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE 44
G G+++A++ + IG G++ G G F R + IVF+PF+GE
Sbjct: 40 GAFGYIIAVVSILDIGKGMVLSGSGQAEFITRYRAIVFKPFKGE 83
>gi|452990025|gb|EME89780.1| hypothetical protein MYCFIDRAFT_213792 [Pseudocercospora
fijiensis CIRAD86]
Length = 224
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN 54
G V + S GLI G G V V + IVFRPF+GEI+ A +T N
Sbjct: 43 GLCVGFHSLVSASEGLIGHGTGIVNVNVDFRLIVFRPFKGEIIRATITQSN 93
>gi|210075719|ref|XP_002143054.1| YALI0D11627p [Yarrowia lipolytica]
gi|199425798|emb|CAR64319.1| YALI0D11627p [Yarrowia lipolytica CLIB122]
Length = 190
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 19/94 (20%)
Query: 1 GRHGFVVAIMGVE-SIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK---- 55
G G+++ ++ IG G + G F V + IV+RPF+ E++ A VT VNK
Sbjct: 60 GEFGYILCVLDQPFDIGKGRVVPSNGSAEFTVNYRAIVWRPFKNEVVDAIVTNVNKMGFF 119
Query: 56 -------------LIPDDMELQ-TGDLPNYTTSD 75
LIP DM+ + + P Y + D
Sbjct: 120 GDVGPLSVFVSSHLIPPDMKFNPSANPPAYVSED 153
>gi|241948883|ref|XP_002417164.1| DNA-directed RNA polymerase III 25 kDa subunit, putative [Candida
dubliniensis CD36]
gi|223640502|emb|CAX44756.1| DNA-directed RNA polymerase III 25 kDa subunit, putative [Candida
dubliniensis CD36]
Length = 195
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G V+ I + I GL++ G G VR + IV++PFRGEIL VT
Sbjct: 43 GLVITIWDILDIKDGLLKPGDGGSYVEVRFRSIVWKPFRGEILTGWVT 90
>gi|190348881|gb|EDK41428.2| hypothetical protein PGUG_05526 [Meyerozyma guilliermondii ATCC
6260]
Length = 194
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTM 52
G VVA+ + I G ++ G G VR +C+V++PF GEIL VT
Sbjct: 43 GLVVAVWDLSEIHDGQLKPGDGASFVKVRFRCVVWKPFVGEILSGWVTQ 91
>gi|115396608|ref|XP_001213943.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114193512|gb|EAU35212.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 174
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN------ 54
G H FV+ +M + IG G + G + ++ + I+++PFRGE + A VT V
Sbjct: 40 GDH-FVICVMDMVDIGEGRVLPSSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFT 98
Query: 55 -----------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
K IP D++ + +P T I
Sbjct: 99 LAGPLAVFIARKNIPSDIKWEPNTVPPQYTDHADQVIE 136
>gi|68480238|ref|XP_715928.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gi|68480354|ref|XP_715878.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
gi|46437521|gb|EAK96866.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
gi|46437573|gb|EAK96917.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gi|238879020|gb|EEQ42658.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
albicans WO-1]
Length = 195
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G V+ I + I GL++ G G VR + IV++PFRGEIL VT
Sbjct: 43 GLVITIWDILDIKDGLLKPGDGGSYVEVRFRSIVWKPFRGEILTGWVT 90
>gi|224107919|ref|XP_002314653.1| predicted protein [Populus trichocarpa]
gi|222863693|gb|EEF00824.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAV 50
HG+ +A+ ++SIG G + + G V F V +C F P +GEIL V
Sbjct: 46 HGYFLAVTNLKSIGKGEVVNKSGDVLFHVEFKCRTFMPMKGEILQGVV 93
>gi|171684353|ref|XP_001907118.1| hypothetical protein [Podospora anserina S mat+]
gi|170942137|emb|CAP67789.1| unnamed protein product [Podospora anserina S mat+]
Length = 249
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
+++AIM + G I G G F V + +V+RPF+GE++ A T VN+
Sbjct: 43 YIIAIMDTFDLSEGRILPGSGMAEFTVGYRAVVWRPFKGEVVDAICTSVNQ 93
>gi|2244822|emb|CAB10245.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
gi|7268172|emb|CAB78508.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
Length = 161
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ VA+ ++ IG G IR+ G V FPV + F+ F+GEI+ V V K
Sbjct: 30 GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLK 81
>gi|405120013|gb|AFR94784.1| RNA polymerase II subunit 7 [Cryptococcus neoformans var. grubii
H99]
Length = 83
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
++++++ + IG G I G F R IV +PF+GE++ A V VNK
Sbjct: 5 YIISVITITDIGEGKIIPSTGQAKFKTRYTAIVMKPFKGEVVDAKVVNVNK 55
>gi|297800772|ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297314106|gb|EFH44529.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 178
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ VA+ ++ IG G IR+ G V FPV + F+ F+GEI+ V V K
Sbjct: 47 GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLK 98
>gi|42566796|ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|149944323|gb|ABR46204.1| At4g14660 [Arabidopsis thaliana]
gi|332658072|gb|AEE83472.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 178
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ VA+ ++ IG G IR+ G V FPV + F+ F+GEI+ V V K
Sbjct: 47 GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLK 98
>gi|395323800|gb|EJF56256.1| hypothetical protein DICSQDRAFT_175060 [Dichomitus squalens
LYAD-421 SS1]
Length = 170
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE 44
G G+++A++ + IG G++ G G F R + IVF+PF+G+
Sbjct: 40 GEFGYIIAVVSILDIGKGMVMPGSGQAEFVTRYRAIVFKPFKGQ 83
>gi|342876142|gb|EGU77800.1| hypothetical protein FOXB_11664 [Fusarium oxysporum Fo5176]
Length = 171
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMELQ 64
F+++IM I G I G+G F V + +V+RPF+GE LIP D++
Sbjct: 43 FIISIMDAFEISEGRILPGLGMAEFTVGYRAVVWRPFKGET----------LIPSDVKYD 92
Query: 65 TGDLPNYTTSDGSVCIS 81
P T++ I
Sbjct: 93 PNATPPQFTNNEDTSIE 109
>gi|296423748|ref|XP_002841415.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637653|emb|CAZ85606.1| unnamed protein product [Tuber melanosporum]
Length = 180
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
GR+ F++ ++ E+I G I G G F + + +V+RPF+GE + V+ VNK+
Sbjct: 40 GRY-FIICVIEYENITLGRIIPGKGDAEFTITYKAVVWRPFKGETVDGVVSSVNKM 94
>gi|407929414|gb|EKG22244.1| hypothetical protein MPH_00423 [Macrophomina phaseolina MS6]
Length = 171
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV 53
+++ +M + G + G G++ + V + IV+RPF+GEIL V+ V
Sbjct: 43 YIICVMDSQDKSEGRVLPGTGYIEYTVHFKAIVWRPFKGEILDGIVSAV 91
>gi|448519252|ref|XP_003868045.1| Rpc25 protein [Candida orthopsilosis Co 90-125]
gi|380352384|emb|CCG22610.1| Rpc25 protein [Candida orthopsilosis]
Length = 195
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
+ G V+ I + I GL++ G G VR +CIVF+PF GE+L VT
Sbjct: 41 KLGVVITIWDLLDIKDGLLKPGDGGSYVEVRFRCIVFKPFVGEVLTGWVT 90
>gi|300706401|ref|XP_002995470.1| hypothetical protein NCER_101623 [Nosema ceranae BRL01]
gi|239604588|gb|EEQ81799.1| hypothetical protein NCER_101623 [Nosema ceranae BRL01]
Length = 155
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G+V++++ ++ + G + G +F ++ + +V +PF+GE + A+V +NK+
Sbjct: 42 GYVISVLEIDDVSEGTVSLN-GATSFKIKYKALVLKPFKGETMEASVVEINKM 93
>gi|354544030|emb|CCE40752.1| hypothetical protein CPAR2_107870 [Candida parapsilosis]
Length = 195
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
+ G V+ I + I GL++ G G VR +CIVF+PF GE+L VT
Sbjct: 41 KLGVVITIWDLLDIKDGLLKPGDGGSYVEVRFRCIVFKPFVGEVLTGWVT 90
>gi|402074868|gb|EJT70339.1| DNA-directed RNA polymerase III polypeptide [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 209
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMEL 63
G + + + GLI G G V V C+ +VFRPF+GE+L A ++ + + D + L
Sbjct: 43 GLCICVYDLLWASEGLIGHGTGVVNVNVECRLVVFRPFKGEVLFARIS---RCVKDGIHL 99
Query: 64 QT 65
+T
Sbjct: 100 RT 101
>gi|346979502|gb|EGY22954.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium dahliae
VdLs.17]
Length = 171
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
+V++IM I G I G G F V + +V+RPF+GE + A V VN
Sbjct: 43 YVISIMDTFDISEGKILPGSGLAEFNVGYRAVVWRPFKGETVDAVVYSVNH 93
>gi|83765518|dbj|BAE55661.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391864670|gb|EIT73964.1| DNA-directed RNA polymerase subunit E' [Aspergillus oryzae 3.042]
Length = 169
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN------ 54
G H FV+ +M + IG G + G + ++ + I+++PFRGE + A VT V
Sbjct: 40 GDH-FVICVMDMVDIGEGRVLPSSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFT 98
Query: 55 -----------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
K IP D++ + +P T I
Sbjct: 99 LAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIE 136
>gi|398411157|ref|XP_003856922.1| hypothetical protein MYCGRDRAFT_31431, partial [Zymoseptoria
tritici IPO323]
gi|339476807|gb|EGP91898.1| hypothetical protein MYCGRDRAFT_31431 [Zymoseptoria tritici
IPO323]
Length = 223
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN 54
G + + S GLI G G V V + IVFRPF+GEI+ A +T N
Sbjct: 38 GLCLGFHSLVSTSEGLIGHGTGIVNVNVDFRLIVFRPFKGEIIRATITQSN 88
>gi|302414828|ref|XP_003005246.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium
albo-atrum VaMs.102]
gi|261356315|gb|EEY18743.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium
albo-atrum VaMs.102]
Length = 177
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
+V++IM I G I G G F V + +V+RPF+GE + A V VN
Sbjct: 43 YVISIMDTFDISEGKILPGSGLAEFNVGYRAVVWRPFKGETVDAVVYSVNH 93
>gi|452847392|gb|EME49324.1| hypothetical protein DOTSEDRAFT_163611 [Dothistroma septosporum
NZE10]
Length = 222
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN 54
G V + S GLI G G V V + IVFRPFRGEI+ A +T +
Sbjct: 43 GLCVGFHSLMSASEGLIGHGTGTVNVNVDFRLIVFRPFRGEIIRATITRAD 93
>gi|70983610|ref|XP_747332.1| RNA polymerase II subunit 7 [Aspergillus fumigatus Af293]
gi|66844958|gb|EAL85294.1| RNA polymerase II subunit 7 [Aspergillus fumigatus Af293]
gi|159123662|gb|EDP48781.1| RNA polymerase II subunit 7 [Aspergillus fumigatus A1163]
Length = 139
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN 54
FV+ +M + IG G + G G + ++ + I+++PFRGE + A VT V
Sbjct: 43 FVICVMDMVDIGEGRVLPGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVK 92
>gi|340517390|gb|EGR47634.1| predicted protein [Trichoderma reesei QM6a]
Length = 170
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN---------- 54
++++IM I G I G G F V + +V+RPF+GE + A V +N
Sbjct: 43 YIISIMDTFDISEGKILPGNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGP 102
Query: 55 -------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP D++ P T++ I
Sbjct: 103 LRLFVSAHLIPSDIKWDPNATPPQFTNNEDTVIE 136
>gi|322697943|gb|EFY89717.1| putative DNA-directed RNA polymerase II chain Rpb7 [Metarhizium
acridum CQMa 102]
Length = 174
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN---------- 54
++++IM I G I G G F V + +V+RPF+GE + A V +N
Sbjct: 43 YIISIMDTFDISEGRILPGNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGP 102
Query: 55 -------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP D++ P T++ I
Sbjct: 103 LRLFVSAHLIPSDIKWDPNATPPQFTNNEDTVIE 136
>gi|348564204|ref|XP_003467895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cavia
porcellus]
Length = 209
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDD 60
G++GFV+A+ +++IG G+I+ G GFV +PV EI + + IP +
Sbjct: 102 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVGLFT--------EIGPMSCFISRHSIPSE 153
Query: 61 MELQ-TGDLPNYTTSDGSVCIS 81
ME + P Y T D + I
Sbjct: 154 MEFDPNSNPPCYKTMDEDIVIQ 175
>gi|146413070|ref|XP_001482506.1| hypothetical protein PGUG_05526 [Meyerozyma guilliermondii ATCC
6260]
Length = 194
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTM 52
G VVA+ + I G ++ G G VR +C+V++PF GEIL VT
Sbjct: 43 GLVVAVWDLLEIHDGQLKPGDGASFVKVRFRCVVWKPFVGEILSGWVTQ 91
>gi|238483091|ref|XP_002372784.1| RNA polymerase II subunit 7 [Aspergillus flavus NRRL3357]
gi|317139645|ref|XP_001817663.2| DNA-directed RNA polymerase II subunit rpb7 [Aspergillus oryzae
RIB40]
gi|220700834|gb|EED57172.1| RNA polymerase II subunit 7 [Aspergillus flavus NRRL3357]
Length = 191
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN------ 54
G H FV+ +M + IG G + G + ++ + I+++PFRGE + A VT V
Sbjct: 40 GDH-FVICVMDMVDIGEGRVLPSSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFT 98
Query: 55 -----------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
K IP D++ + +P T I
Sbjct: 99 LAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIE 136
>gi|358388804|gb|EHK26397.1| hypothetical protein TRIVIDRAFT_86417 [Trichoderma virens Gv29-8]
Length = 171
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN---------- 54
++++IM I G I G G F V + +V+RPF+GE + A V +N
Sbjct: 43 YIISIMDTFDISEGRILPGNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGP 102
Query: 55 -------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP D++ P T++ I
Sbjct: 103 LRLFVSAHLIPSDIKWDPNATPPQFTNNEDTVIE 136
>gi|406604823|emb|CCH43698.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 150
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G+++ ++ SI G G I G F V+ + +V++PF+GE++ + V+K
Sbjct: 19 GKFGYIMCVLDCMSIDIGKGKIIPSDGSAEFEVKYRAVVWKPFKGEVVDGVCSQVSKLGF 78
Query: 56 --------------LIPDDMELQTGDLPNYTTSDGSV 78
LIP DM P SD V
Sbjct: 79 FVDVGPLSVFVSTHLIPSDMSFNPSSNPPAYQSDDQV 115
>gi|328872887|gb|EGG21254.1| hypothetical protein DFA_01132 [Dictyostelium fasciculatum]
Length = 1058
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT-------MVNKL 56
G +A+ + G I G G VRC+ +VF+PF GEIL + +V+
Sbjct: 835 GLFIALYDILGTGDAYIYSGDGGSHLIVRCRLVVFKPFVGEILEGVIKKTTKDYIIVSLG 894
Query: 57 IPDDMELQTGDLPNYTTSD 75
+D+ + + DLPN + D
Sbjct: 895 FYNDVMISSIDLPNPSFYD 913
>gi|310790921|gb|EFQ26454.1| RNA polymerase Rpb7-like domain-containing protein [Glomerella
graminicola M1.001]
gi|380484883|emb|CCF39716.1| DNA-directed RNA polymerase II subunit RPB7 [Colletotrichum
higginsianum]
gi|429860547|gb|ELA35279.1| RNA polymerase ii subunit 7 [Colletotrichum gloeosporioides Nara
gc5]
Length = 171
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
++++IM I G I G G F V + +V+RPF+GE + A V VN
Sbjct: 43 YIISIMDTFDISEGRILPGSGLAEFTVGYRAVVWRPFKGETVDAVVYSVNH 93
>gi|302814541|ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Selaginella
moellendorffii]
gi|300143291|gb|EFJ09983.1| hypothetical protein SELMODRAFT_128885 [Selaginella
moellendorffii]
Length = 187
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G V++ ++SI G + G G T+ V Q ++FRPF GEIL A + +K
Sbjct: 43 GLCVSLYDIQSIEGGFVFPGDGAPTYTVEFQLVMFRPFPGEILVAKLKKCDK 94
>gi|392585924|gb|EIW75262.1| hypothetical protein CONPUDRAFT_169647 [Coniophora puteana
RWD-64-598 SS2]
Length = 229
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL------- 56
G VA+ + S G+G +R G G + + V + +VFRPF GE++ A V ++
Sbjct: 43 GLCVAVFDLVSAGSGRVRYGDGLLYYKVAFRMVVFRPFVGEVVIARVRSADEEGVRLTMG 102
Query: 57 IPDDMELQTGDLPNYTTSDGSVCISF 82
DDM + LP + D S F
Sbjct: 103 FFDDMYVPLAYLPQPSAFDPSERAHF 128
>gi|388498028|gb|AFK37080.1| unknown [Medicago truncatula]
Length = 180
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ +A+ ++ IG G +R G V FPV + F+ F+GE+L V V K
Sbjct: 47 GYFLAVTTLDKIGEGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLK 98
>gi|254574492|ref|XP_002494355.1| RNA polymerase II subunit [Komagataella pastoris GS115]
gi|238034154|emb|CAY72176.1| RNA polymerase II subunit [Komagataella pastoris GS115]
gi|328353828|emb|CCA40225.1| DNA-directed RNA polymerase II subunit G [Komagataella pastoris CBS
7435]
Length = 171
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 20/95 (21%)
Query: 1 GRHGFVVAIMGVESI--GTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN---- 54
G+ G++V ++ +I G G I G G F V+ + +V++PF+GE++ A V+ V+
Sbjct: 40 GQFGYIVTVLDGMNIDVGKGRIIPGSGSAEFEVKYRAVVWKPFKGEVVDAIVSNVSPIGF 99
Query: 55 -------------KLIPDDMELQ-TGDLPNYTTSD 75
+LIPD++ + P Y ++D
Sbjct: 100 FADVGPLNVFVSTRLIPDNLVYNPSNSPPAYMSND 134
>gi|217074784|gb|ACJ85752.1| unknown [Medicago truncatula]
Length = 180
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ +A+ ++ IG G +R G V FPV + F+ F+GE+L V V K
Sbjct: 47 GYFLAVTTLDKIGEGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLK 98
>gi|453089152|gb|EMF17192.1| DNA-directed RNA polymerase III 25 kd polypeptide [Mycosphaerella
populorum SO2202]
Length = 224
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
R G + + S GLI G G V V + +VFRPF+GEI+ A +T ++
Sbjct: 41 RVGLCIGFHSLISASEGLIGHGTGIVNVNVDFRLVVFRPFKGEIMRATITQSSQ 94
>gi|219118585|ref|XP_002180062.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408319|gb|EEC48253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 181
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1 GRHGFVVAIMGV--ESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
+G+VV ++ V + I +G+I G V F V+ ++ RPF E+L A VT N L
Sbjct: 40 ANYGYVVNVIEVPEDQIRSGIIEYDTGNVVFTVKYTALLLRPFLNEVLDAVVTQCNAL 97
>gi|357441001|ref|XP_003590778.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|355479826|gb|AES61029.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
Length = 173
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ +A+ ++ IG G +R G V FPV + F+ F+GE+L V V K
Sbjct: 40 GYFLAVTTLDKIGEGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLK 91
>gi|302810586|ref|XP_002986984.1| hypothetical protein SELMODRAFT_235152 [Selaginella
moellendorffii]
gi|300145389|gb|EFJ12066.1| hypothetical protein SELMODRAFT_235152 [Selaginella
moellendorffii]
Length = 155
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G V++ ++SI G + G G T+ V Q ++FRPF GEIL A + +K
Sbjct: 43 GLCVSLYDIQSIEGGFVFPGDGAPTYTVEFQLVMFRPFPGEILVAKLKKCDK 94
>gi|402086572|gb|EJT81470.1| hypothetical protein GGTG_01448 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 170
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN 54
++++IM I G I G G F V + +V+RPF+GE + A V VN
Sbjct: 43 YIISIMDTFDISPGKILPGNGLAEFTVGYRAVVWRPFKGETVDAIVDSVN 92
>gi|449297101|gb|EMC93119.1| hypothetical protein BAUCODRAFT_228826 [Baudoinia compniacensis
UAMH 10762]
Length = 171
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL-----------------G 47
++AI+ +E + + G G + V + IV+RPFRGE++ G
Sbjct: 43 LIIAIIDIEDVSEPKVVPGSGLAQYDVSFRAIVWRPFRGEVVDGLVSSVISGGFFVDVGG 102
Query: 48 AAVTMVNKLIPDDMELQ-TGDLPNYT 72
AV + LIP ++ G P+YT
Sbjct: 103 LAVFVSKALIPPQLKFSVEGSAPSYT 128
>gi|378733137|gb|EHY59596.1| DNA-directed RNA polymerase II subunit G [Exophiala dermatitidis
NIH/UT8656]
Length = 169
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------------- 51
++V IM + +I G +R G G F + + I+++PF+GE + AV+
Sbjct: 43 YIVCIMDIYNISAGRVRPGSGDAHFTILYRAILWKPFKGETIDCAVSSIKPQGVFCEAGP 102
Query: 52 ---MVNKL-IPDDMELQT-GDLPNYTTSDGSV 78
V+KL +P DM P Y+ + G V
Sbjct: 103 LTVFVSKLHLPPDMRHNPDATPPQYSNNAGDV 134
>gi|449548373|gb|EMD39340.1| hypothetical protein CERSUDRAFT_134380 [Ceriporiopsis
subvermispora B]
Length = 234
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G V + + +G G +R G GF+ + V + +VFRPF E+L A V ++
Sbjct: 43 GLCVCVFDLSEVGEGKVRYGDGFLWYKVVFRLVVFRPFASEVLLAKVKSSDE 94
>gi|385302410|gb|EIF46542.1| rna polymerase iii subunit required for transcription initiation
[Dekkera bruxellensis AWRI1499]
Length = 189
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
+ G V+A+ V + G+++ G G + V +C+VF+PF GE+L
Sbjct: 25 KLGLVIAVWDVLKVDDGMLKPGDGSIYIKVVFRCVVFKPFVGEVL 69
>gi|397575684|gb|EJK49830.1| hypothetical protein THAOC_31253 [Thalassiosira oceanica]
Length = 183
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1 GRHGFVVAIMGV--ESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
+GFVV ++ V E I +G+I G V F V+ ++ RPF E++ A V N+L
Sbjct: 40 ANYGFVVNVIEVPEEQIRSGVIEYDTGNVVFYVKYTALMLRPFVNEVIDATVAQCNEL 97
>gi|126274174|ref|XP_001387865.1| subunit of RNA polymerase III [Scheffersomyces stipitis CBS 6054]
gi|126213735|gb|EAZ63842.1| subunit of RNA polymerase III [Scheffersomyces stipitis CBS 6054]
Length = 196
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G VV I + I GL++ G G VR +CIV++PF GEI+ V+
Sbjct: 43 GLVVTIWDLLDINDGLLKPGDGGSYVEVRFRCIVWKPFIGEIITGWVS 90
>gi|255717771|ref|XP_002555166.1| KLTH0G02926p [Lachancea thermotolerans]
gi|238936550|emb|CAR24729.1| KLTH0G02926p [Lachancea thermotolerans CBS 6340]
Length = 171
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 1 GRHGFVVAIMGVES--IGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G+++ ++ E+ I G I G G F V+ + +V++PF+GE++ V+
Sbjct: 40 GKFGYILCVLDCENVEIERGRILPGDGSAEFTVKYRAVVWKPFKGEVVDGVVSSCTNLGF 99
Query: 56 --------------LIPDDMELQTG-DLPNYTTSD 75
L+P+D+ +G + P+Y +S+
Sbjct: 100 EVDVGPLSVFVSPFLMPEDLSYNSGSNPPSYQSSE 134
>gi|302925647|ref|XP_003054136.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735077|gb|EEU48423.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 147
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMELQ 64
F+++IM I G I G G F V + +V+RPF+GE LIP D++
Sbjct: 43 FIISIMDTFDISEGRILPGNGLAEFTVGYRAVVWRPFKGE----------TLIPSDIKWD 92
Query: 65 TGDLPNYTTSDGSVCIS 81
P T++ I
Sbjct: 93 PNATPPQFTNNEDTVIE 109
>gi|449015716|dbj|BAM79118.1| RNA polymerase II subunit G [Cyanidioschyzon merolae strain 10D]
Length = 174
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 1 GRHGFVVAIMGVES-IGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G +G+++A++ VE + G I G G F +R + +V+RPF GE+L + V +
Sbjct: 41 GLYGYLLAVVEVERPLPPGRILPGTGHAIFRLRYKALVYRPFLGEVLDGVIASVTR 96
>gi|224002987|ref|XP_002291165.1| 19kDa subunit of RNA polymerase [Thalassiosira pseudonana
CCMP1335]
gi|220972941|gb|EED91272.1| 19kDa subunit of RNA polymerase [Thalassiosira pseudonana
CCMP1335]
Length = 183
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1 GRHGFVVAIMGV--ESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
+GFVV ++ V E I +G+I G V F V+ ++ RPF E++ A V N+L
Sbjct: 40 ANYGFVVNVIEVPEEQIRSGIIEYDTGNVVFYVKYTALLLRPFINEVVDATVAQCNEL 97
>gi|409041829|gb|EKM51314.1| hypothetical protein PHACADRAFT_263362 [Phanerochaete carnosa
HHB-10118-sp]
Length = 226
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G V++ + +G G +R G GF+ + V + +VFRPF E++ A V ++
Sbjct: 43 GLCVSVFDLAEVGEGKVRYGDGFLWYKVVFRLVVFRPFPSEVILAKVKSSDE 94
>gi|18403570|ref|NP_566719.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|21553765|gb|AAM62858.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
gi|332643168|gb|AEE76689.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 174
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+++ +E+IG G I++ G + FPV I F+ F+GEI+ V V+K
Sbjct: 46 GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHK 97
>gi|444319100|ref|XP_004180207.1| hypothetical protein TBLA_0D01800 [Tetrapisispora blattae CBS 6284]
gi|387513249|emb|CCH60688.1| hypothetical protein TBLA_0D01800 [Tetrapisispora blattae CBS 6284]
Length = 171
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ + I G I G F VR + +VF+PF+GE++ V
Sbjct: 40 GKFGYILCVLDYDKIDIERGRIIPTDGSAEFTVRYRAVVFKPFKGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D++ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPQDLQFNAGSNPPSYQSSEDVITIK 140
>gi|11994719|dbj|BAB03035.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
Length = 157
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+++ +E+IG G I++ G + FPV I F+ F+GEI+ V V+K
Sbjct: 29 GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHK 80
>gi|213406069|ref|XP_002173806.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
gi|212001853|gb|EEB07513.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
Length = 205
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
G +AI +IG G+I+ G G V+ + +VFRPFRGE++
Sbjct: 43 GLAIAIFDFLTIGEGIIKFGDGCSYMNVKFRLLVFRPFRGEVM 85
>gi|294939334|ref|XP_002782418.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239894024|gb|EER14213.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 149
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G +V I+ + I+DG G V Q I+FRPF+ E++ V+ V+KL
Sbjct: 41 NHDGTIVHIINIVDKSKPKIQDGTGMALVNVVFQGIIFRPFKNEVMDCWVSEVSKL 96
>gi|294875732|ref|XP_002767446.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239869032|gb|EER00164.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 143
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G +V I+ + I+DG G V Q I+FRPF+ E++ V+ V+KL
Sbjct: 41 NHDGTIVHIINIVDKSKPKIQDGTGMALVNVVFQGIIFRPFKNEVMDCWVSEVSKL 96
>gi|358395852|gb|EHK45239.1| hypothetical protein TRIATDRAFT_299936 [Trichoderma atroviride IMI
206040]
Length = 171
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN---------- 54
++++IM I G I G F V + +V+RPF+GE + A V +N
Sbjct: 43 YIISIMDTFDISEGRILPSNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGP 102
Query: 55 -------KLIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP D++ P T++ I
Sbjct: 103 LRLFVSAHLIPSDIKWDPNATPPQFTNNEDTVIE 136
>gi|281208326|gb|EFA82502.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 267
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMEL 63
G +A+ + G + G G VRC+ +VF+PF GEIL + K D M+L
Sbjct: 42 GLFIALYDILGTGDAYVYSGDGGSHLLVRCRLVVFKPFVGEILEG---FIKKSTRDYMQL 98
Query: 64 QTG 66
G
Sbjct: 99 SLG 101
>gi|400601274|gb|EJP68917.1| RNA polymerase Rpb7-like domain-containing protein [Beauveria
bassiana ARSEF 2860]
Length = 219
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN 54
++++IM I G I G F V + +V+RPF+GE + A V +N
Sbjct: 43 YIISIMDTFDISEGKILPSNGLAEFTVGYRAVVWRPFKGETVDAVVYSIN 92
>gi|388504534|gb|AFK40333.1| unknown [Lotus japonicus]
Length = 180
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ A+ ++ +G G +R G V FPV + F+ F+GEIL V V K
Sbjct: 47 GYFTAVTTLDKVGEGKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLK 98
>gi|344228476|gb|EGV60362.1| hypothetical protein CANTEDRAFT_110098 [Candida tenuis ATCC
10573]
Length = 201
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN 54
G ++I +E I GL+R G G + + IV++PF GE+L VT N
Sbjct: 43 GLAISIWDIEDIKEGLLRPGDGGSHVEITFRMIVWKPFIGELLEGVVTDCN 93
>gi|46108676|ref|XP_381396.1| hypothetical protein FG01220.1 [Gibberella zeae PH-1]
Length = 248
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE 44
F+++IM I G I G+G F V + +V+RPF+GE
Sbjct: 43 FIISIMDAFEISEGRILPGLGMAEFTVGYRAVVWRPFKGE 82
>gi|452987401|gb|EME87156.1| hypothetical protein MYCFIDRAFT_89029 [Pseudocercospora fijiensis
CIRAD86]
Length = 170
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 6 VVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV 53
V+ I+GV+ I ++ G G + + + I++RPFRGE++ VT V
Sbjct: 44 VIQIIGVDDISEPVLVPGTGMAKYVLSYRAIIWRPFRGEVVDGLVTTV 91
>gi|255559937|ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
gi|223539824|gb|EEF41404.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
Length = 194
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN 54
G +++ V I G I G G T+ VR + +VFRPF GEI+ A + N
Sbjct: 43 GLCISVYDVTHIDGGFIFPGDGASTYTVRFRIVVFRPFVGEIIVAKLKESN 93
>gi|297831004|ref|XP_002883384.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297329224|gb|EFH59643.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 174
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+++ +E+IG G I++ G + FPV I F+ F+GE++ V V+K
Sbjct: 46 GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEVVHGVVQKVHK 97
>gi|406607743|emb|CCH40848.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 206
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMEL 63
GFVV++ + I GL++ G G + IVFRPF GEIL ++K PD +++
Sbjct: 43 GFVVSVWDLIKIDDGLLKPGDGGSYIKCIVRVIVFRPFVGEILTG---WIDKCTPDGLKI 99
Query: 64 QTG 66
+
Sbjct: 100 KMA 102
>gi|398411600|ref|XP_003857138.1| hypothetical protein MYCGRDRAFT_66842 [Zymoseptoria tritici
IPO323]
gi|339477023|gb|EGP92114.1| hypothetical protein MYCGRDRAFT_66842 [Zymoseptoria tritici
IPO323]
Length = 167
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 6 VVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV 53
V+ I+ VE I ++ G G + + + IV+RPFRGE++ V+ V
Sbjct: 44 VIRIVDVEDISEPKLQPGTGMAVYHLHYRAIVWRPFRGEVVDGLVSSV 91
>gi|255730589|ref|XP_002550219.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132176|gb|EER31734.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 197
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G +++ + I GL++ G G V+ + +V++PFRGEIL VT
Sbjct: 43 GLAISVWDLLDIKDGLLKPGDGGSYVEVKFRALVWKPFRGEILTGWVT 90
>gi|224062241|ref|XP_002300802.1| predicted protein [Populus trichocarpa]
gi|222842528|gb|EEE80075.1| predicted protein [Populus trichocarpa]
Length = 186
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
+ G ++I + I G I G G T+ V + IVFRPF GEI+ A +
Sbjct: 40 SKLGLCISIYDIRKIDGGFISPGEGASTYTVEFRMIVFRPFVGEIISAKLK 90
>gi|154283689|ref|XP_001542640.1| hypothetical protein HCAG_02811 [Ajellomyces capsulatus NAm1]
gi|150410820|gb|EDN06208.1| hypothetical protein HCAG_02811 [Ajellomyces capsulatus NAm1]
gi|225561964|gb|EEH10244.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus G186AR]
gi|240275577|gb|EER39091.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus H143]
gi|325091406|gb|EGC44716.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus H88]
Length = 169
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--------- 55
++V +M I G + G G + + + IV++PF+GE + A VT V
Sbjct: 43 YIVCVMDTYDISEGRVLPGSGLAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGP 102
Query: 56 --------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP +++ P T +G I
Sbjct: 103 LTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIE 136
>gi|239607718|gb|EEQ84705.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis ER-3]
gi|327355593|gb|EGE84450.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis ATCC 18188]
Length = 169
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--------- 55
++V +M I G + G G + + + IV++PF+GE + A VT V
Sbjct: 43 YIVCVMDTYDISEGRVLPGSGLAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGP 102
Query: 56 --------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP +++ P T +G I
Sbjct: 103 LTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIE 136
>gi|226291032|gb|EEH46460.1| RNA polymerase II subunit 7 [Paracoccidioides brasiliensis Pb18]
Length = 169
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--------- 55
++V +M I G + G G + + + IV++PF+GE + A VT V
Sbjct: 43 YIVCVMDTYDISEGRVIPGSGLAEYTIMYRAIVWKPFKGETVDAVVTSVKNQGIFAEVGP 102
Query: 56 --------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP +++ P T +G I
Sbjct: 103 LTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIE 136
>gi|389631563|ref|XP_003713434.1| DNA-directed RNA polymerase III polypeptide [Magnaporthe oryzae
70-15]
gi|351645767|gb|EHA53627.1| DNA-directed RNA polymerase III polypeptide [Magnaporthe oryzae
70-15]
Length = 213
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMEL 63
G + + + GLI G G V V C+ ++FRPF+GE+L ++ + + D + L
Sbjct: 43 GLCICMYDLLWASEGLIGHGDGLVNVNVECRLVIFRPFKGEVLFGRIS---RCVKDGIHL 99
Query: 64 QT 65
+T
Sbjct: 100 RT 101
>gi|261197854|ref|XP_002625329.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis SLH14081]
gi|239595292|gb|EEQ77873.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis SLH14081]
Length = 169
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--------- 55
++V +M I G + G G + + + IV++PF+GE + A VT V
Sbjct: 43 YIVCVMDTYDISEGRVLPGSGLAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGQ 102
Query: 56 --------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP +++ P T +G I
Sbjct: 103 LTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIE 136
>gi|440632844|gb|ELR02763.1| hypothetical protein GMDG_05707 [Geomyces destructans 20631-21]
Length = 207
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMEL 63
G + + + S GLI G G V V + +VFRPFR E+L +T + P+ + L
Sbjct: 43 GLCICLYDLLSSSEGLIGHGTGLVNVNVEFRLVVFRPFRHEVLHGRITSAS---PEGIHL 99
Query: 64 QT 65
+T
Sbjct: 100 RT 101
>gi|225679312|gb|EEH17596.1| RNA polymerase II subunit 7 [Paracoccidioides brasiliensis Pb03]
Length = 195
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--------- 55
++V +M I G + G G + + + IV++PF+GE + A VT V
Sbjct: 43 YIVCVMDTYDISEGRVIPGSGLAEYTIMYRAIVWKPFKGETVDAVVTSVKNQGIFAEVGP 102
Query: 56 --------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP +++ P T +G I
Sbjct: 103 LTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIE 136
>gi|154283489|ref|XP_001542540.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410720|gb|EDN06108.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 693
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
GLI G G V V+ + IVFRPF+GE++ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKIT 90
>gi|119188519|ref|XP_001244866.1| hypothetical protein CIMG_04307 [Coccidioides immitis RS]
Length = 180
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN 54
++V +M I G I G G + + + IV++PF+GE + A VT V
Sbjct: 43 YIVCVMDTYDISEGRIIPGSGMAEYTIMYRAIVWKPFKGETVDAIVTSVK 92
>gi|366988751|ref|XP_003674143.1| hypothetical protein NCAS_0A12040 [Naumovozyma castellii CBS 4309]
gi|342300006|emb|CCC67762.1| hypothetical protein NCAS_0A12040 [Naumovozyma castellii CBS 4309]
Length = 171
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ + I G I G F V+ + IVF+PF+GE++ V
Sbjct: 40 GKFGYILCVLDYDKIEIERGRILPTDGSAEFQVKYRAIVFKPFKGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPSDLNFNAGSNPPSYQSSEDVITIK 140
>gi|15222202|ref|NP_172164.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
gi|7523702|gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana]
gi|17529108|gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana]
gi|23296904|gb|AAN13199.1| putative RNA polymerase [Arabidopsis thaliana]
gi|332189917|gb|AEE28038.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
Length = 204
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGA 48
G V+I ++S+ G + G G T+ V + +VFRPF GE++ A
Sbjct: 43 GLCVSIYDIKSVEGGFVLPGDGAATYKVGLRIVVFRPFVGEVIAA 87
>gi|327305241|ref|XP_003237312.1| RNA polymerase II subunit 7 [Trichophyton rubrum CBS 118892]
gi|326460310|gb|EGD85763.1| RNA polymerase II subunit 7 [Trichophyton rubrum CBS 118892]
Length = 191
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
++V +M + I G I G G + + + IV++PF+GE + A VT V
Sbjct: 43 YIVCVMDMYDISEGKIIPGSGLAEYTIVYRAIVWKPFKGETVDAIVTSVKN 93
>gi|254581916|ref|XP_002496943.1| ZYRO0D11726p [Zygosaccharomyces rouxii]
gi|238939835|emb|CAR28010.1| ZYRO0D11726p [Zygosaccharomyces rouxii]
Length = 171
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ + I G I G F VR + IVF+PF+GE++ V
Sbjct: 40 GKFGYILCVLDYDRIDIERGRILPTDGSAEFTVRYRAIVFKPFKGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPQDLMFNAGSNPPSYQSSEDVITIK 140
>gi|296805993|ref|XP_002843816.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma otae CBS
113480]
gi|238845118|gb|EEQ34780.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma otae CBS
113480]
Length = 169
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
++V +M + I G I G G + + + IV++PF+GE + A VT V
Sbjct: 43 YIVCVMDMYDISEGKIIPGSGLAEYTIVYRAIVWKPFKGETVDAIVTSVKN 93
>gi|303323777|ref|XP_003071880.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240111582|gb|EER29735.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320031834|gb|EFW13792.1| RNA polymerase II subunit 7 [Coccidioides posadasii str.
Silveira]
gi|392867774|gb|EAS33470.2| RNA polymerase II subunit 7 [Coccidioides immitis RS]
Length = 169
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
++V +M I G I G G + + + IV++PF+GE + A VT V
Sbjct: 43 YIVCVMDTYDISEGRIIPGSGMAEYTIMYRAIVWKPFKGETVDAIVTSVKN 93
>gi|410080111|ref|XP_003957636.1| hypothetical protein KAFR_0E03500 [Kazachstania africana CBS 2517]
gi|372464222|emb|CCF58501.1| hypothetical protein KAFR_0E03500 [Kazachstania africana CBS 2517]
Length = 171
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ + I G I G F V+ + +VF+PF+GE++ V
Sbjct: 40 GKFGYILCVLNYDQIEIERGRILPTDGSAEFKVKYRAVVFKPFKGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK 140
>gi|302667367|ref|XP_003025270.1| hypothetical protein TRV_00586 [Trichophyton verrucosum HKI 0517]
gi|291189368|gb|EFE44659.1| hypothetical protein TRV_00586 [Trichophyton verrucosum HKI 0517]
Length = 253
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G +A + GLI G G V V+ + IVFRPF+GE++ +T
Sbjct: 55 GLCIAFYDLLESSDGLIGHGTGLVNVNVKFRIIVFRPFKGEVIIGKIT 102
>gi|449465372|ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449522228|ref|XP_004168129.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 175
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G+ +A+ +E+IG G +R G V FPV I F+ +RGEIL V V K
Sbjct: 47 GYFLAVTTLENIGEGKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLK 97
>gi|315046208|ref|XP_003172479.1| DNA-directed RNA polymerase III polypeptide [Arthroderma gypseum
CBS 118893]
gi|311342865|gb|EFR02068.1| DNA-directed RNA polymerase III polypeptide [Arthroderma gypseum
CBS 118893]
Length = 195
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G VA + GLI G G V V+ + IVFRPF+GE++ +T
Sbjct: 43 GLCVAFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEVIIGKIT 90
>gi|363752353|ref|XP_003646393.1| hypothetical protein Ecym_4540 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890028|gb|AET39576.1| hypothetical protein Ecym_4540 [Eremothecium cymbalariae
DBVPG#7215]
Length = 171
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G+++ ++ E+I G I G F V+ + +V++PF+GE++ V+
Sbjct: 40 GKFGYILCVLDCENIEIERGRILPTDGSAEFTVKYRAVVWKPFKGEVVDGIVSSCTNLGF 99
Query: 56 --------------LIPDDMELQTG-DLPNYTTSD 75
L+PDD+ +G + P+Y +S+
Sbjct: 100 EVDVGPLSVFVSPFLMPDDLTFNSGSNPPSYQSSE 134
>gi|295665476|ref|XP_002793289.1| DNA-directed RNA polymerase II subunit RPB7 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278203|gb|EEH33769.1| DNA-directed RNA polymerase II subunit RPB7 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 202
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--------- 55
++V +M I G + G G + + + IV++PF+GE + A VT V
Sbjct: 43 YIVCVMDTYDISEGRVIPGSGLAEYTIMYRAIVWKPFKGETVDAVVTSVKNQGIFAEVGP 102
Query: 56 --------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIP +++ P T +G I
Sbjct: 103 LTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIE 136
>gi|298709254|emb|CBJ31193.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 279
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G + + ESIG + G + VR + +VFRPF GEIL V+ K
Sbjct: 60 GLCICLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILTGKVSSCTK 111
>gi|298674525|ref|YP_003726275.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298287513|gb|ADI73479.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 188
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL-GAAVTMVN 54
++G +VAI +ESIG G I G G V + V + IVF P E++ G V +V+
Sbjct: 41 KNGSIVAITDIESIGEGHIIMGDGAVYYDVTFKAIVFMPMMQEVIEGKVVEIVD 94
>gi|386002591|ref|YP_005920890.1| DNA-directed RNA polymerase subunit E' [Methanosaeta harundinacea
6Ac]
gi|357210647|gb|AET65267.1| DNA-directed RNA polymerase, subunit E' [Methanosaeta
harundinacea 6Ac]
Length = 190
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G VVA++GV+ IG G I G G V + IVF+P EI+ V + K
Sbjct: 43 GTVVAVLGVDDIGEGRILAGDGAVYYDANFDAIVFKPEMQEIVEGEVVEIVK 94
>gi|367008802|ref|XP_003678902.1| hypothetical protein TDEL_0A03590 [Torulaspora delbrueckii]
gi|359746559|emb|CCE89691.1| hypothetical protein TDEL_0A03590 [Torulaspora delbrueckii]
Length = 171
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ + I G I G F VR + +VF+PFRGE++ V
Sbjct: 40 GKFGYILCVLDYDKIDIERGRILPTDGSADFIVRYRAVVFKPFRGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPQDLIFNAGSNPPSYQSSEDVITIK 140
>gi|110590860|pdb|2B8K|G Chain G, 12-Subunit Rna Polymerase Ii
Length = 215
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ ++I G I G F V+ + +VF+PF+GE++ V
Sbjct: 40 GKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK 140
>gi|42571371|ref|NP_973776.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
gi|332189916|gb|AEE28037.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
Length = 189
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGA 48
G V+I ++S+ G + G G T+ V + +VFRPF GE++ A
Sbjct: 43 GLCVSIYDIKSVEGGFVLPGDGAATYKVGLRIVVFRPFVGEVIAA 87
>gi|298710882|emb|CBJ26391.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 177
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 1 GRHGFVVAIMGV--ESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G GFV+ + V + I G I GF V + I FRPF E+L AAV+ V +L
Sbjct: 40 GSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTEL 97
>gi|50305083|ref|XP_452500.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641633|emb|CAH01351.1| KLLA0C06787p [Kluyveromyces lactis]
Length = 171
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G+++ ++ E+I G I G F V+ + +V++PF+GE+L V+
Sbjct: 40 GKFGYILCVLDCENIEIERGRILPTDGSAEFTVKYRAVVWKPFKGEVLDGIVSSCTNLGF 99
Query: 56 --------------LIPDDMELQTG-DLPNYTTSD 75
L+P+D+ +G + P+Y +S+
Sbjct: 100 EVEVGPLSVFVSPFLMPEDLTFNSGSNPPSYQSSE 134
>gi|323456227|gb|EGB12094.1| hypothetical protein AURANDRAFT_59851 [Aureococcus
anophagefferens]
Length = 179
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 17 TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
TG++ G V+ R I+ RPF+ E+L A VT VN+L
Sbjct: 60 TGIVDYDTGCVSVNARYSAILLRPFKNEVLDAVVTHVNEL 99
>gi|326477107|gb|EGE01117.1| DNA-directed RNA polymerase III polypeptide [Trichophyton equinum
CBS 127.97]
Length = 195
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G +A + GLI G G V V+ + IVFRPF+GE++ +T
Sbjct: 43 GLCIAFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEVIIGKIT 90
>gi|326472028|gb|EGD96037.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS
112818]
Length = 195
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G +A + GLI G G V V+ + IVFRPF+GE++ +T
Sbjct: 43 GLCIAFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEVIIGKIT 90
>gi|401624138|gb|EJS42207.1| rpb7p [Saccharomyces arboricola H-6]
Length = 171
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ ++I G I G F V+ + +VF+PF+GE++ V
Sbjct: 40 GKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPQDLAFNAGSNPPSYQSSEDVITIK 140
>gi|119484158|ref|XP_001261982.1| DNA-directed rna polymerase III 25 kD polypeptide [Neosartorya
fischeri NRRL 181]
gi|119410138|gb|EAW20085.1| DNA-directed rna polymerase III 25 kD polypeptide [Neosartorya
fischeri NRRL 181]
Length = 201
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
GLI G G V V+ + IVFRPF+GEIL ++ +
Sbjct: 65 GLIGHGTGLVNVNVKFRLIVFRPFKGEILLGKISSATQ 102
>gi|392575439|gb|EIW68572.1| hypothetical protein TREMEDRAFT_71846 [Tremella mesenterica DSM
1558]
Length = 172
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++G++++++ + SIG G + G G F IV +PF+GE++ V VNK+
Sbjct: 40 GKYGYIISVITITSIGEGKVLPGTGQARFKTTYTAIVMKPFKGEVVDGQVVNVNKM 95
>gi|261197898|ref|XP_002625351.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239595314|gb|EEQ77895.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607836|gb|EEQ84823.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327355776|gb|EGE84633.1| DNA-directed RNA polymerase III subunit polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 195
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
GLI G G V V+ + IVFRPF+GEI+ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEIILGKIT 90
>gi|295665246|ref|XP_002793174.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|225679219|gb|EEH17503.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
gi|226278088|gb|EEH33654.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226290932|gb|EEH46360.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides brasiliensis Pb18]
Length = 195
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
GLI G G V V+ + IVFRPF+GEI+ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEIILGKIT 90
>gi|401838577|gb|EJT42119.1| RPB7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 171
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ ++I G I G F V+ + +VF+PF+GE++ V
Sbjct: 40 GKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK 140
>gi|398366567|ref|NP_010692.3| Rpb7p [Saccharomyces cerevisiae S288c]
gi|464672|sp|P34087.1|RPB7_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName: Full=B16
gi|30749743|pdb|1NT9|G Chain G, Complete 12-Subunit Rna Polymerase Ii
gi|34810559|pdb|1PQV|G Chain G, Rna Polymerase Ii-Tfiis Complex
gi|58177170|pdb|1WCM|G Chain G, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679450|pdb|1Y1W|G Chain G, Complete Rna Polymerase Ii Elongation Complex
gi|61679467|pdb|1Y77|G Chain G, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679508|pdb|1Y1V|G Chain G, Refined Rna Polymerase Ii-tfiis Complex
gi|61679521|pdb|1Y1Y|G Chain G, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|61679566|pdb|1Y14|B Chain B, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|61679568|pdb|1Y14|D Chain D, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|83754249|pdb|2B63|G Chain G, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|134104680|pdb|2JA5|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104695|pdb|2JA6|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104716|pdb|2JA7|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104728|pdb|2JA7|S Chain S, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104740|pdb|2JA8|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|160877779|pdb|2R7Z|G Chain G, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172233|pdb|2R92|G Chain G, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172246|pdb|2R93|G Chain G, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613468|pdb|2VUM|G Chain G, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|224983596|pdb|3FKI|G Chain G, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|240104517|pdb|3H3V|H Chain H, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839447|pdb|3HOU|G Chain G, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839462|pdb|3HOU|S Chain S, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839477|pdb|3HOV|G Chain G, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839492|pdb|3HOW|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839507|pdb|3HOX|G Chain G, Complete Rna Polymerase Ii Elongation Complex V
gi|254839522|pdb|3HOY|G Chain G, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839537|pdb|3HOZ|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471952|pdb|3I4M|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471967|pdb|3I4N|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618771|pdb|3K1F|G Chain G, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|325053969|pdb|3PO2|G Chain G, Arrested Rna Polymerase Ii Elongation Complex
gi|325053984|pdb|3PO3|G Chain G, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634544|pdb|3QT1|G Chain G, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|353251639|pdb|3J0K|G Chain G, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380842|pdb|4A3C|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546296|pdb|4A3B|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546314|pdb|4A3D|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546331|pdb|4A3E|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546348|pdb|4A3F|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546365|pdb|4A3J|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546382|pdb|4A3K|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546398|pdb|4A3L|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546415|pdb|4A3M|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977885|pdb|4A3G|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977900|pdb|4A3I|G Chain G, Rna Polymerase Ii Binary Complex With Dna
gi|380764985|pdb|4A93|G Chain G, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145452|pdb|4BBR|G Chain G, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145465|pdb|4BBS|G Chain G, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|300239|gb|AAC60558.1| RNA polymerase II subunit RPB7 [Saccharomyces cerevisiae]
gi|927335|gb|AAB64844.1| Rpb7p: RNA polymerase II subunit [Saccharomyces cerevisiae]
gi|151942377|gb|EDN60733.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190404660|gb|EDV07927.1| RNA polymerase II dissociable subunit [Saccharomyces cerevisiae
RM11-1a]
gi|256271208|gb|EEU06290.1| Rpb7p [Saccharomyces cerevisiae JAY291]
gi|259145642|emb|CAY78906.1| Rpb7p [Saccharomyces cerevisiae EC1118]
gi|285811422|tpg|DAA12246.1| TPA: Rpb7p [Saccharomyces cerevisiae S288c]
gi|323305480|gb|EGA59224.1| Rpb7p [Saccharomyces cerevisiae FostersB]
gi|323334047|gb|EGA75432.1| Rpb7p [Saccharomyces cerevisiae AWRI796]
gi|323349147|gb|EGA83378.1| Rpb7p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355561|gb|EGA87382.1| Rpb7p [Saccharomyces cerevisiae VL3]
gi|349577455|dbj|GAA22624.1| K7_Rpb7p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365766199|gb|EHN07698.1| Rpb7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 171
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ ++I G I G F V+ + +VF+PF+GE++ V
Sbjct: 40 GKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK 140
>gi|297843474|ref|XP_002889618.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335460|gb|EFH65877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 204
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAA 49
G V++ ++SI G + G G T+ V + +VFRPF GE++ A
Sbjct: 43 GLCVSVYDIKSIEGGFVLPGDGAATYKVGFRIVVFRPFVGEVIAAK 88
>gi|414886498|tpg|DAA62512.1| TPA: DNA-directed RNA polymerase III subunit polypeptide [Zea mays]
Length = 290
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G V++ + SI G I G G T+ V + ++F+PF GEIL +T
Sbjct: 131 GLCVSVYDIRSIEGGSIHPGEGCSTYKVSFRLLMFKPFNGEILVGRIT 178
>gi|260943680|ref|XP_002616138.1| hypothetical protein CLUG_03379 [Clavispora lusitaniae ATCC
42720]
gi|238849787|gb|EEQ39251.1| hypothetical protein CLUG_03379 [Clavispora lusitaniae ATCC
42720]
Length = 196
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G V++ + I GL++ G G VR + IV++PF GEIL V
Sbjct: 43 GLAVSVWDISDIKDGLLKPGDGGAYVEVRFRIIVWKPFVGEILTGWVA 90
>gi|358398243|gb|EHK47601.1| hypothetical protein TRIATDRAFT_83183 [Trichoderma atroviride IMI
206040]
Length = 193
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
G +++ V GLI G G V V + IVFRPF+GE++
Sbjct: 43 GLCISLYDVLWTSEGLIGHGTGLVNVNVEFRMIVFRPFKGEVM 85
>gi|358379479|gb|EHK17159.1| hypothetical protein TRIVIDRAFT_66115 [Trichoderma virens Gv29-8]
Length = 193
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
G +++ V GLI G G V V + IVFRPF+GE++
Sbjct: 43 GLCISLYDVLWTSEGLIGHGTGLVNVNVEFRMIVFRPFKGEVM 85
>gi|340515872|gb|EGR46123.1| predicted protein [Trichoderma reesei QM6a]
Length = 193
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
G +++ V GLI G G V V + IVFRPF+GE++
Sbjct: 43 GLCISLFDVLWTSEGLIGHGTGLVNVNVEFRMIVFRPFKGEVM 85
>gi|392862351|gb|EAS37009.2| DNA-directed RNA polymerase, partial [Coccidioides immitis RS]
Length = 195
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
GLI G G V V+ + IVFRPF+GE++ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKIT 90
>gi|451849514|gb|EMD62817.1| hypothetical protein COCSADRAFT_144644 [Cochliobolus sativus
ND90Pr]
Length = 214
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G + + + S GLI G G V V + VFRPFRGEI+ + N+
Sbjct: 43 GLCLCMWDLLSASEGLIGHGTGLVNVNVEFRMTVFRPFRGEIIYGRIKSSNQ 94
>gi|365761292|gb|EHN02956.1| Rpb7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 150
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ ++I G I G F V+ + +VF+PF+GE++ V
Sbjct: 19 GKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGF 78
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 79 EVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK 119
>gi|323309699|gb|EGA62907.1| Rpb7p [Saccharomyces cerevisiae FostersO]
gi|323338133|gb|EGA79367.1| Rpb7p [Saccharomyces cerevisiae Vin13]
gi|392300523|gb|EIW11614.1| Rpb7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 150
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ ++I G I G F V+ + +VF+PF+GE++ V
Sbjct: 19 GKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGF 78
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 79 EVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK 119
>gi|451992730|gb|EMD85209.1| hypothetical protein COCHEDRAFT_1229156 [Cochliobolus
heterostrophus C5]
Length = 213
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G + + + S GLI G G V V + VFRPFRGEI+ + N+
Sbjct: 43 GLCLCMWDLLSASEGLIGHGTGLVNVNVEFRMTVFRPFRGEIIYGRIKSSNQ 94
>gi|367042650|ref|XP_003651705.1| hypothetical protein THITE_2112289 [Thielavia terrestris NRRL
8126]
gi|346998967|gb|AEO65369.1| hypothetical protein THITE_2112289 [Thielavia terrestris NRRL
8126]
Length = 199
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G + + + GLI G G V V + +VFRPF+GE++ A +T
Sbjct: 43 GLCICLWDILWTSEGLIGQGDGMVNVNVEFRMVVFRPFKGEVIVARIT 90
>gi|320040236|gb|EFW22169.1| DNA-directed RNA polymerase III polypeptide [Coccidioides
posadasii str. Silveira]
Length = 195
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
GLI G G V V+ + IVFRPF+GE++ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKIT 90
>gi|221505857|gb|EEE31502.1| RNA polymerase Rpb7, N-terminal domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 1221
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
G VA + I + IR G G + V + FRPF+GEIL
Sbjct: 1064 GLAVAFYELRRIQSATIRSGDGSARYKVEFSLVFFRPFQGEIL 1106
>gi|221484160|gb|EEE22456.1| RNA polymerase Rpb7, N-terminal domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 1214
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
G VA + I + IR G G + V + FRPF+GEIL
Sbjct: 1057 GLAVAFYELRRIQSATIRSGDGSARYKVEFSLVFFRPFQGEIL 1099
>gi|237838547|ref|XP_002368571.1| RNA polymerase Rpb7, N-terminal domain-containing protein [Toxoplasma
gondii ME49]
gi|211966235|gb|EEB01431.1| RNA polymerase Rpb7, N-terminal domain-containing protein [Toxoplasma
gondii ME49]
Length = 1215
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
G VA + I + IR G G + V + FRPF+GEIL
Sbjct: 1058 GLAVAFYELRRIQSATIRSGDGSARYKVEFSLVFFRPFQGEIL 1100
>gi|67521980|ref|XP_659051.1| hypothetical protein AN1447.2 [Aspergillus nidulans FGSC A4]
gi|40745421|gb|EAA64577.1| hypothetical protein AN1447.2 [Aspergillus nidulans FGSC A4]
gi|259486758|tpe|CBF84875.1| TPA: DNA-directed RNA polymerase III subunit 22.9 kDa, putative
(AFU_orthologue; AFUA_8G04350) [Aspergillus nidulans
FGSC A4]
Length = 208
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
GLI G G V V+ + IVFRPFRGEI+ ++
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFRGEIVLGKIS 90
>gi|255073311|ref|XP_002500330.1| predicted protein [Micromonas sp. RCC299]
gi|226515593|gb|ACO61588.1| predicted protein [Micromonas sp. RCC299]
Length = 201
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G V+ + + SI G + G G F V + +VFRPF GEI+ + +K
Sbjct: 44 GLVITLYEIVSIEGGTVYPGEGSAHFKVEFRVVVFRPFVGEIIEGTLKKADK 95
>gi|365981979|ref|XP_003667823.1| hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS 421]
gi|343766589|emb|CCD22580.1| hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS 421]
Length = 171
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ + I G I G F V+ + IVF+PF+GE++ V
Sbjct: 40 GKFGYILCVLDYDKIEIERGRILPTDGSAEFNVKYRAIVFKPFKGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPSDLMFNAGSNPPSYQSSEDVITIK 140
>gi|320580456|gb|EFW94678.1| RNA polymerase III subunit C25 [Ogataea parapolymorpha DL-1]
Length = 206
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
+ G VVA+ + + GL++ G G V VR + +VF+P GE+L
Sbjct: 41 KLGLVVAVWDLLQVDDGLLKPGDGAVFINVRFRIVVFKPVVGEVL 85
>gi|170101368|ref|XP_001881901.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643256|gb|EDR07509.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 238
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL------- 56
G V + + G G +R G GF+ + V + +VFRPF E++ A V ++
Sbjct: 43 GLCVCLFDLVQAGEGKVRYGDGFLWYKVVFRMVVFRPFTSEVIIAKVKSSDEDGIRLTIG 102
Query: 57 IPDDMELQTGDLPNYTTSD 75
DDM + LP + D
Sbjct: 103 FFDDMHIPAAYLPQPSAFD 121
>gi|325091306|gb|EGC44616.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 195
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
GLI G G V V+ + IVFRPF+GE++ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKIT 90
>gi|225561861|gb|EEH10141.1| DNA-directed RNA polymerase III 25 kD polypeptide [Ajellomyces
capsulatus G186AR]
Length = 195
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
GLI G G V V+ + IVFRPF+GE++ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKIT 90
>gi|242799025|ref|XP_002483289.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces stipitatus ATCC 10500]
gi|218716634|gb|EED16055.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces stipitatus ATCC 10500]
Length = 195
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
GLI G G V V + IVFRPF+GEIL +T
Sbjct: 57 GLIGHGTGLVNVNVTFRLIVFRPFKGEILLGKIT 90
>gi|189203085|ref|XP_001937878.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|330945443|ref|XP_003306557.1| hypothetical protein PTT_19733 [Pyrenophora teres f. teres 0-1]
gi|187984977|gb|EDU50465.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|311315891|gb|EFQ85355.1| hypothetical protein PTT_19733 [Pyrenophora teres f. teres 0-1]
Length = 171
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 17/93 (18%)
Query: 6 VVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV------------ 53
+V I+ I G + G G + V + +V+RP++GE++ VT V
Sbjct: 44 IVCILDSFDISDGKVMPGTGSAEYVVHYKAVVWRPYKGEVMDGIVTSVLRTGFFVDCGSL 103
Query: 54 -----NKLIPDDMELQTGDLPNYTTSDGSVCIS 81
+IP +++ P T DG I
Sbjct: 104 QAFVGRSMIPAEIKFDANATPPQWTDDGEQVIE 136
>gi|50287313|ref|XP_446086.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525393|emb|CAG59010.1| unnamed protein product [Candida glabrata]
gi|114049595|emb|CAL07955.1| hypothetical protein [Candida glabrata]
Length = 171
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ ++I G I G F V+ + +VF+PF+GE++ V
Sbjct: 40 GKFGYILCVLDYDNIEIERGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDIITIK 140
>gi|453089186|gb|EMF17226.1| DNA-directed RNA polymerase II subunit RPB7 [Mycosphaerella
populorum SO2202]
Length = 171
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 6 VVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV 53
+V I+ ++ I ++ G G + + + IV+RPFRGE++ VT V
Sbjct: 44 IVQIIEIDEISEPVLVPGTGMAKYTLSYRAIVWRPFRGEVVDGMVTSV 91
>gi|344304860|gb|EGW35092.1| subunit of RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
Length = 196
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G V+ I + I GL++ G G V+ +C+V++PF GE+L V+
Sbjct: 43 GLVITIWDLLDIKDGLLKPGDGGSYVEVQFRCVVWKPFVGEVLTGWVS 90
>gi|357517543|ref|XP_003629060.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523082|gb|AET03536.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 187
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN 54
G +++ + SI G I G G T+ V I+FRPF GEI+ A V ++
Sbjct: 70 GLCISVYDITSIEGGSIFPGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLD 120
>gi|226496239|ref|NP_001147612.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide [Zea
mays]
gi|195612502|gb|ACG28081.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide [Zea
mays]
Length = 202
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
+ G V++ + SI G I G G T+ V + ++F+PF GEIL +T
Sbjct: 41 KLGLCVSVYDIRSIEGGSIHPGEGCSTYKVSFRLLMFKPFNGEILVGRIT 90
>gi|238007814|gb|ACR34942.1| unknown [Zea mays]
Length = 202
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 2 RHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
+ G V++ + SI G I G G T+ V + ++F+PF GEIL +T
Sbjct: 41 KLGLCVSVYDIRSIEGGSIHPGEGCSTYKVSFRLLMFKPFNGEILVGRIT 90
>gi|156835988|ref|XP_001642239.1| hypothetical protein Kpol_186p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156112712|gb|EDO14381.1| hypothetical protein Kpol_186p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 171
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ + I G I G F V+ + IVF+PF+GE++ V
Sbjct: 40 GKFGYILCVLDYDKIEIERGRILPTDGSAEFTVKYRAIVFKPFKGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPQDLIFNAGSNPPSYQSSEDVITIK 140
>gi|169784414|ref|XP_001826668.1| DNA-directed RNA polymerase III subunit RPC8 [Aspergillus oryzae
RIB40]
gi|238508450|ref|XP_002385418.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus flavus NRRL3357]
gi|83775415|dbj|BAE65535.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220688937|gb|EED45289.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus flavus NRRL3357]
gi|391864250|gb|EIT73546.1| DNA-directed RNA polymerase subunit E' [Aspergillus oryzae 3.042]
Length = 193
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
GLI G G V V+ + IVFRPF+GEI+ ++
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEIMLGKIS 90
>gi|115491011|ref|XP_001210133.1| hypothetical protein ATEG_00047 [Aspergillus terreus NIH2624]
gi|114196993|gb|EAU38693.1| hypothetical protein ATEG_00047 [Aspergillus terreus NIH2624]
Length = 206
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
GLI G G V V+ + IVFRPF+GEI+
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEIM 85
>gi|330508866|ref|YP_004385294.1| DNA-directed RNA polymerase [Methanosaeta concilii GP6]
gi|328929674|gb|AEB69476.1| DNA-directed RNA polymerase [Methanosaeta concilii GP6]
Length = 194
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G +VA++G + IG G I G G + + V +VF+P EI+ V + K
Sbjct: 43 GTIVAVLGADDIGEGHILAGDGSIYYEVNFDTLVFKPEMQEIIEGEVVEIVK 94
>gi|145253312|ref|XP_001398169.1| DNA-directed RNA polymerase III subunit RPC8 [Aspergillus niger
CBS 513.88]
gi|134083732|emb|CAK42970.1| unnamed protein product [Aspergillus niger]
gi|350633207|gb|EHA21573.1| hypothetical protein ASPNIDRAFT_51264 [Aspergillus niger ATCC
1015]
Length = 193
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
GLI G G V V+ + IVFRPF+GEI+
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEIM 85
>gi|358372760|dbj|GAA89362.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
kawachii IFO 4308]
Length = 193
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
GLI G G V V+ + IVFRPF+GEI+
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEIM 85
>gi|452848074|gb|EME50006.1| hypothetical protein DOTSEDRAFT_122159 [Dothistroma septosporum
NZE10]
Length = 167
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 6 VVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV 53
++ I+ ++ + ++ G G + V + +V+RPFRGE++ VT V
Sbjct: 44 IIQIIEIDEVSEPMLVPGTGMAKYTVSYRALVWRPFRGEVVDGLVTSV 91
>gi|307107725|gb|EFN55967.1| hypothetical protein CHLNCDRAFT_145291 [Chlorella variabilis]
Length = 221
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMEL 63
G VV + + SIG G + G + V + +VFRPFR E+L V V+K+ + M +
Sbjct: 43 GLVVTLYDILSIGDGYVYPSDGGAHYKVCFRVVVFRPFRDELL---VGKVHKMTKEGMYV 99
Query: 64 QTG 66
G
Sbjct: 100 DLG 102
>gi|167517525|ref|XP_001743103.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778202|gb|EDQ91817.1| predicted protein [Monosiga brevicollis MX1]
Length = 174
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 3 HGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
HG+V+A++ ++ I G I G + F V ++ RP +++ VT VN
Sbjct: 42 HGYVLAVIKIDRISEGRILFNRGEILFNVTYTAVILRPVPKQVIDTMVTSVNN 94
>gi|357517541|ref|XP_003629059.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523081|gb|AET03535.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 220
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVN 54
G +++ + SI G I G G T+ V I+FRPF GEI+ A V ++
Sbjct: 70 GLCISVYDITSIEGGSIFPGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLD 120
>gi|429961557|gb|ELA41102.1| hypothetical protein VICG_01895 [Vittaforma corneae ATCC 50505]
Length = 154
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL 56
G++++++G++ I G + G ++F V Q +V +P GEI+ A + K+
Sbjct: 42 GYIISVLGIDGISEGKVLL-TGHISFDVEYQAVVLKPTSGEIVDAPIVSSTKM 93
>gi|238014632|gb|ACR38351.1| unknown [Zea mays]
Length = 130
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G V++ + SI G I G G T+ V + ++F+PF GEIL +T
Sbjct: 43 GLCVSVYDIRSIEGGSIHPGEGCSTYKVSFRLLMFKPFNGEILVGRIT 90
>gi|45198920|ref|NP_985949.1| AFR402Cp [Ashbya gossypii ATCC 10895]
gi|44984949|gb|AAS53773.1| AFR402Cp [Ashbya gossypii ATCC 10895]
gi|374109179|gb|AEY98085.1| FAFR402Cp [Ashbya gossypii FDAG1]
Length = 171
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G+ G+++ ++ E+I G I G F V+ + +V++PF+GE++ V+
Sbjct: 40 GKFGYILCVLDSENIEIERGRILPTDGSAEFTVKYRAVVWKPFKGEVVDGIVSSCTNLGF 99
Query: 56 --------------LIPDDMELQTG-DLPNYTTSD 75
L+P+D+ +G + P+Y +S+
Sbjct: 100 EVDVGPLSVFVSPFLMPEDLTFNSGSNPPSYQSSE 134
>gi|451849958|gb|EMD63261.1| hypothetical protein COCSADRAFT_38126 [Cochliobolus sativus ND90Pr]
gi|452001764|gb|EMD94223.1| hypothetical protein COCHEDRAFT_1202004 [Cochliobolus
heterostrophus C5]
Length = 171
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 17/93 (18%)
Query: 6 VVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV------------ 53
+V I+ I G + G G + V + +V+RP++GE++ VT V
Sbjct: 44 IVCILDSFDISDGKVMPGSGSAEYVVHYKAVVWRPYKGEVMDGIVTSVLRTGFFVDCGSL 103
Query: 54 -----NKLIPDDMELQTGDLPNYTTSDGSVCIS 81
+IP +++ P T DG I
Sbjct: 104 QAFVGRSMIPAEIKFDANATPPQWTDDGEQVIE 136
>gi|320592229|gb|EFX04668.1| RNA polymerase 2 subunit 7 [Grosmannia clavigera kw1407]
Length = 144
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKLIPDDMELQ 64
++++IM I G I G G F V + +V+RPF+GE + + K P+ Q
Sbjct: 43 YIISIMDTFDISAGKILPGNGLAEFTVGYRAVVWRPFKGETMIPSQV---KYDPNATPPQ 99
Query: 65 TGDLPNYTTSDGS 77
D +Y G+
Sbjct: 100 FTDNEDYRIEPGT 112
>gi|425771830|gb|EKV10263.1| hypothetical protein PDIP_61090 [Penicillium digitatum Pd1]
gi|425777177|gb|EKV15361.1| hypothetical protein PDIG_26640 [Penicillium digitatum PHI26]
Length = 193
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
GLI G G V V+ + IVFRPF+GEI+ ++
Sbjct: 57 GLIGHGTGLVNVNVKFRMIVFRPFKGEIMLGKIS 90
>gi|255953671|ref|XP_002567588.1| Pc21g05420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589299|emb|CAP95439.1| Pc21g05420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 185
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G ++ + GLI G G V V+ + IVFRPF+GEI+ ++
Sbjct: 35 GLCISFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEIMLGKIS 82
>gi|240275469|gb|EER38983.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
Length = 202
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
GLI G G V V+ + IVFRPF+GE++ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKIT 90
>gi|121719683|ref|XP_001276540.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
clavatus NRRL 1]
gi|119404752|gb|EAW15114.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
clavatus NRRL 1]
Length = 216
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
GLI G G V V+ + IVFRPF+GEI+ ++ +
Sbjct: 80 GLIGHGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATQ 117
>gi|345566306|gb|EGX49249.1| hypothetical protein AOL_s00078g282 [Arthrobotrys oligospora ATCC
24927]
Length = 194
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
G V+ + + GLI G G V V + IVFRPF+GE++
Sbjct: 43 GLVICLYDILKSSDGLIGSGTGDVNINVEFRLIVFRPFKGEVI 85
>gi|116754621|ref|YP_843739.1| DNA-directed RNA polymerase subunit E' [Methanosaeta thermophila
PT]
gi|116666072|gb|ABK15099.1| DNA-directed RNA polymerase, subunit E' [Methanosaeta thermophila
PT]
Length = 206
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRP 40
G +VAI+GV+SIG G I G G V + V +VF+P
Sbjct: 43 GAIVAILGVDSIGEGRIIAGDGAVYYDVIFDAVVFKP 79
>gi|212541336|ref|XP_002150823.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces marneffei ATCC 18224]
gi|210068122|gb|EEA22214.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces marneffei ATCC 18224]
Length = 194
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 18 GLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
GLI G G V V + IVFRPF+GEIL
Sbjct: 57 GLIGHGTGLVNVNVTFRLIVFRPFKGEIL 85
>gi|169602421|ref|XP_001794632.1| hypothetical protein SNOG_04209 [Phaeosphaeria nodorum SN15]
gi|160706165|gb|EAT87969.2| hypothetical protein SNOG_04209 [Phaeosphaeria nodorum SN15]
Length = 188
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 6 VVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV 53
+V I+ I G + G G + V + IV+RP++GE++ VT V
Sbjct: 44 IVCILDAFDISDGKVLPGSGHAEYIVHYKAIVWRPYKGEVMDGVVTSV 91
>gi|414886499|tpg|DAA62513.1| TPA: hypothetical protein ZEAMMB73_496623 [Zea mays]
Length = 218
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G V++ + SI G I G G T+ V + ++F+PF GEIL +T
Sbjct: 131 GLCVSVYDIRSIEGGSIHPGEGCSTYKVSFRLLMFKPFNGEILVGRIT 178
>gi|359479790|ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Vitis vinifera]
gi|296086693|emb|CBI32328.3| unnamed protein product [Vitis vinifera]
Length = 192
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G +++ + SI G + G G T+ V + ++FRPF GEI+ A +
Sbjct: 43 GLCISVYDIRSIDGGFVFPGDGASTYTVEFRLVMFRPFVGEIITAKLK 90
>gi|414886500|tpg|DAA62514.1| TPA: hypothetical protein ZEAMMB73_496623 [Zea mays]
Length = 210
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G V++ + SI G I G G T+ V + ++F+PF GEIL +T
Sbjct: 131 GLCVSVYDIRSIEGGSIHPGEGCSTYKVSFRLLMFKPFNGEILVGRIT 178
>gi|169868152|ref|XP_001840650.1| polymerase III polypeptide H [Coprinopsis cinerea okayama7#130]
gi|116498254|gb|EAU81149.1| polymerase III polypeptide H [Coprinopsis cinerea okayama7#130]
Length = 227
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G + + + +G G +R G GF+ + V + VFRPF E++ A V ++
Sbjct: 43 GLCICVFDLTEVGDGRVRYGDGFLWYKVTFRMTVFRPFVSEVVVAKVKSSDE 94
>gi|225437229|ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis
vinifera]
gi|297735498|emb|CBI17938.3| unnamed protein product [Vitis vinifera]
Length = 192
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G +++ + SI G + G G T+ V + ++FRPF GEI+ A +
Sbjct: 43 GLCISVYDIRSIDGGFVFPGDGASTYTVEFRLVMFRPFVGEIITAKLK 90
>gi|389641835|ref|XP_003718550.1| hypothetical protein MGG_17442 [Magnaporthe oryzae 70-15]
gi|351641103|gb|EHA48966.1| hypothetical protein MGG_17442 [Magnaporthe oryzae 70-15]
gi|440469750|gb|ELQ38847.1| DNA-directed RNA polymerase II subunit RPB7 [Magnaporthe oryzae
Y34]
gi|440482256|gb|ELQ62763.1| DNA-directed RNA polymerase II subunit RPB7 [Magnaporthe oryzae
P131]
Length = 172
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 5 FVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
+++++M I G I G F V + +V+RPF+G+ + V VN+
Sbjct: 43 YIISVMDAVDISPGKIVPGNAMAEFTVNYRAVVWRPFKGQTVDGIVDSVNQ 93
>gi|396473245|ref|XP_003839299.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Leptosphaeria maculans JN3]
gi|312215868|emb|CBX95820.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Leptosphaeria maculans JN3]
Length = 213
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
G + + + S GLI G G V + + VFRPFRGEI+
Sbjct: 43 GLCICMWDLLSASEGLIGHGTGLVNVNIEFRMAVFRPFRGEII 85
>gi|367007176|ref|XP_003688318.1| hypothetical protein TPHA_0N01030 [Tetrapisispora phaffii CBS
4417]
gi|357526626|emb|CCE65884.1| hypothetical protein TPHA_0N01030 [Tetrapisispora phaffii CBS
4417]
Length = 205
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT 51
G VA+ V + G +R G G VR + ++F+PF GEI+ +T
Sbjct: 43 GLCVAVYDVLEVDEGQLRPGDGSSYINVRFRALIFKPFIGEIVTGWIT 90
>gi|346321249|gb|EGX90849.1| DNA-directed RNA polymerase III, putative [Cordyceps militaris
CM01]
Length = 192
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
G + + + GLI +G G V + IVFRPF+GE+L
Sbjct: 43 GLCICLYDILWTSEGLIGNGTGLVNVNAEFRMIVFRPFKGEVL 85
>gi|389745440|gb|EIM86621.1| polymerase III polypeptide H [Stereum hirsutum FP-91666 SS1]
Length = 220
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G + + + G G +R G GF+ + V + VFRPF E++ A V ++
Sbjct: 43 GLCICVFDIAEAGEGKVRYGDGFLWYAVVFRLTVFRPFPSEVILAKVKSSDE 94
>gi|392564956|gb|EIW58133.1| polymerase III polypeptide H [Trametes versicolor FP-101664 SS1]
Length = 220
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G + + + +G G +R G G + + V + +VFRPF E+L A V ++
Sbjct: 43 GLCICVFDLSEVGEGKVRYGDGCLWYKVVFRLVVFRPFASEVLLARVKSSDE 94
>gi|330925060|ref|XP_003300899.1| hypothetical protein PTT_12262 [Pyrenophora teres f. teres 0-1]
gi|311324782|gb|EFQ91031.1| hypothetical protein PTT_12262 [Pyrenophora teres f. teres 0-1]
Length = 214
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G + + + S GLI G G V + + VFRPFRGEI+ + N+
Sbjct: 43 GLCLCMWDLLSATEGLIGHGTGLVNVNIEFRMTVFRPFRGEIIYGLIKSSNE 94
>gi|189203789|ref|XP_001938230.1| DNA-directed rna polymerase III 25 kD polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985329|gb|EDU50817.1| DNA-directed rna polymerase III 25 kD polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 218
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK 55
G + + + S GLI G G V + + VFRPFRGEI+ + N+
Sbjct: 43 GLCLCMWDLLSATEGLIGHGTGLVNVNIEFRMTVFRPFRGEIIYGLIKSSNE 94
>gi|66822507|ref|XP_644608.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|66822575|ref|XP_644642.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|122057759|sp|Q557J3.1|RPC8_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit H
gi|60472717|gb|EAL70667.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|60472766|gb|EAL70716.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 252
Score = 34.3 bits (77), Expect = 9.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAV 50
G VA+ + G + G G VR + +VF+PF+GE+L +
Sbjct: 42 GLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKGEVLEGVI 88
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.328 0.147 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,349,565,130
Number of Sequences: 23463169
Number of extensions: 46102519
Number of successful extensions: 97709
Number of sequences better than 100.0: 431
Number of HSP's better than 100.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 97280
Number of HSP's gapped (non-prelim): 434
length of query: 82
length of database: 8,064,228,071
effective HSP length: 53
effective length of query: 29
effective length of database: 6,820,680,114
effective search space: 197799723306
effective search space used: 197799723306
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 69 (31.2 bits)