BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047634
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2
SV=1
Length = 176
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 72/98 (73%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVA+ G+E+IG GLIRDG GFVTFPV+ QC+VFRPF+GEIL A VTMVNK
Sbjct: 40 GRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q+GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQ 137
>sp|P38421|RPB7_ARATH DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana
GN=RPB19 PE=1 SV=1
Length = 176
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/98 (64%), Positives = 71/98 (72%), Gaps = 17/98 (17%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK----- 55
GRHGFVVAI G+++IG GLIRDG GFVTFPV+ QC+VFRPF+GEIL A VT+VNK
Sbjct: 40 GRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFA 99
Query: 56 ------------LIPDDMELQTGDLPNYTTSDGSVCIS 81
LIPDDME Q GD+PNYTTSDGSV I
Sbjct: 100 EAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQ 137
>sp|Q7ZW41|RPB7_DANRE DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio
GN=polr2g PE=2 SV=1
Length = 172
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D V I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQ 138
>sp|P62489|RPB7_RAT DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 138
>sp|P62488|RPB7_MOUSE DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 138
>sp|P62487|RPB7_HUMAN DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens
GN=POLR2G PE=1 SV=1
Length = 172
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 138
>sp|Q5E9B8|RPB7_BOVIN DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G
PE=2 SV=1
Length = 172
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 18/99 (18%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNKL---- 56
G++GFV+A+ +++IG G+I+ G GFV +PV+ + IVFRPF+GE++ A VT VNK+
Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFT 99
Query: 57 -------------IPDDMELQ-TGDLPNYTTSDGSVCIS 81
IP +ME + P Y T D + I
Sbjct: 100 EIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQ 138
>sp|Q54P04|RPB7_DICDI DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium
discoideum GN=polr2g PE=3 SV=1
Length = 172
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 20/100 (20%)
Query: 1 GRHGFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV------- 53
GR+GF++ I V+ + G + + G+V F V+ + I+F+PF+GE+L A VT V
Sbjct: 40 GRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFA 99
Query: 54 ----------NKLIPDDM--ELQTGDLPNYTTSDGSVCIS 81
+LIP DM + Q+ +P + + DGS IS
Sbjct: 100 EAGPLSIFVSTQLIPSDMIFDAQSA-VPCFVSEDGSSKIS 138
>sp|O14459|RPB7_SCHPO DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb7 PE=1 SV=1
Length = 172
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 20/95 (21%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMVNK--- 55
G++G+++ ++ +I G + G GF F V+ + +++RPFRGE++ A VT VNK
Sbjct: 41 GQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGF 100
Query: 56 --------------LIPDDMELQ-TGDLPNYTTSD 75
L+P DM+ T + PNY+ D
Sbjct: 101 FANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGED 135
>sp|P34087|RPB7_YEAST DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB7 PE=1
SV=1
Length = 171
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 1 GRHGFVVAIMGVESIG--TGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVT------- 51
G+ G+++ ++ ++I G I G F V+ + +VF+PF+GE++ V
Sbjct: 40 GKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGF 99
Query: 52 ----------MVNKLIPDDMELQTG-DLPNYTTSDGSVCIS 81
+ L+P D+ G + P+Y +S+ + I
Sbjct: 100 EVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK 140
>sp|Q557J3|RPC8_DICDI DNA-directed RNA polymerase III subunit rpc8 OS=Dictyostelium
discoideum GN=polr3h-1 PE=2 SV=1
Length = 252
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAV 50
G VA+ + G + G G VR + +VF+PF+GE+L +
Sbjct: 42 GLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKGEVLEGVI 88
>sp|O94285|RPC8_SCHPO DNA-directed RNA polymerase III subunit rpc8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc25 PE=1 SV=1
Length = 203
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEIL 46
G + + IG G+I+ G G V + I+FRPFRGE++
Sbjct: 43 GLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVM 85
>sp|Q87DG7|CYSNC_XYLFT Bifunctional enzyme CysN/CysC OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=cysNC PE=3 SV=1
Length = 623
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 14 SIGTGLIRDGIGFVTFPVRCQCIVFRPFRGE------ILGAAVTMVNKLIPDDMELQTGD 67
++ G +R G G V P C V R F G+ + G AVT+ + D++++ GD
Sbjct: 254 TLAAGRVRSGDGVVVLPSGCVSRVVRVFNGDTEVHEAVAGQAVTLT---LADEIDISRGD 310
Query: 68 L 68
+
Sbjct: 311 V 311
>sp|Q39011|KSG7_ARATH Shaggy-related protein kinase eta OS=Arabidopsis thaliana GN=ASK7
PE=1 SV=2
Length = 380
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 41 FRGEILGAAVTMVNKLIPDDMELQTG 66
F+ E+ G++ +VNKLIPD ++ Q G
Sbjct: 346 FKQEVAGSSPELVNKLIPDHIKRQLG 371
>sp|Q57840|RPOE1_METJA DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoE1 PE=1 SV=1
Length = 187
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 4 GFVVAIMGVESIGTGLIRDGIGFVTFPVRCQCIVFRPFRGEILGAAVTMV 53
GFV++I+ V+ IG G + G G PV + +V+ P E++ V V
Sbjct: 43 GFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDV 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.147 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,928,888
Number of Sequences: 539616
Number of extensions: 1093964
Number of successful extensions: 2314
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2297
Number of HSP's gapped (non-prelim): 17
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)